AlfalfaGEDB | MS.gene27529

M. sativa cultivar XinJiangDaYe / MS.gene27529

KEGG: K13448
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF13405.9 PF13499.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27529.t1	XP_003623666.1	98.3	175	3	0	1	175	4	178	8.70E-89	336.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27529.t1	P43187	58.5	183	65	1	4	175	23	205	1.2e-54	214.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27529.t1	G7KZ68	98.3	175	3	0	1	175	4	178	6.3e-89	336.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene27529	MS.gene026940	PPI
MS.gene27529	MS.gene65954	PPI
MS.gene25186	MS.gene27529	PPI
MS.gene020515	MS.gene27529	PPI
MS.gene27529	MS.gene80013	PPI
MS.gene58860	MS.gene27529	PPI
MS.gene27516	MS.gene27529	PPI
MS.gene27529	MS.gene066863	PPI
MS.gene27529	MS.gene02545	PPI
MS.gene036930	MS.gene27529	PPI
MS.gene27529	MS.gene016268	PPI
MS.gene27529	MS.gene93763	PPI
MS.gene27529	MS.gene80012	PPI
MS.gene27529	MS.gene87673	PPI
MS.gene83068	MS.gene27529	PPI
MS.gene27529	MS.gene98972	PPI
MS.gene62689	MS.gene27529	PPI
MS.gene54637	MS.gene27529	PPI
MS.gene026530	MS.gene27529	PPI
MS.gene92789	MS.gene27529	PPI
MS.gene27529	MS.gene066862	PPI
MS.gene27529	MS.gene013748	PPI
MS.gene27529	MS.gene015658	PPI
MS.gene27529	MS.gene026618	PPI
MS.gene80011	MS.gene27529	PPI
MS.gene070168	MS.gene27529	PPI
MS.gene016268	MS.gene27529	PPI
MS.gene27529	MS.gene92775	PPI
MS.gene27529	MS.gene03228	PPI
MS.gene070167	MS.gene27529	PPI
MS.gene27529	MS.gene46237	PPI
MS.gene05284	MS.gene27529	PPI
MS.gene27529	MS.gene036915	PPI
MS.gene27529	MS.gene94551	PPI
MS.gene27529	MS.gene63000	PPI
MS.gene27529	MS.gene046988	PPI
MS.gene040127	MS.gene27529	PPI
MS.gene27529	MS.gene58906	PPI
MS.gene27529	MS.gene79028	PPI
MS.gene052672	MS.gene27529	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27529.t1	MTR_7g074240	98.286	175	3	0	1	175	4	178	1.05e-125	351
MS.gene27529.t1	MTR_4g067270	40.523	153	81	2	22	174	6	148	9.70e-32	112
MS.gene27529.t1	MTR_4g115170	36.601	153	91	1	22	168	65	217	1.39e-24	95.5
MS.gene27529.t1	MTR_1g046950	37.671	146	81	2	22	167	5	140	1.13e-22	88.6
MS.gene27529.t1	MTR_3g088655	34.568	162	94	4	17	172	4	159	2.84e-22	87.8
MS.gene27529.t1	MTR_7g089760	35.714	154	89	1	21	174	5	148	3.74e-22	87.4
MS.gene27529.t1	MTR_2g098890	35.088	171	98	2	3	168	41	203	6.90e-22	88.2
MS.gene27529.t1	MTR_3g067610	36.301	146	77	2	22	167	6	135	7.83e-22	86.3
MS.gene27529.t1	MTR_1g030440	33.758	157	96	2	17	173	18	166	3.86e-21	85.1
MS.gene27529.t1	MTR_1g047100	37.162	148	82	3	22	169	5	141	5.53e-21	84.0
MS.gene27529.t1	MTR_7g075040	37.255	153	89	4	19	169	45	192	2.26e-20	84.0
MS.gene27529.t1	MTR_1g041285	37.333	150	82	2	20	169	11	148	3.37e-20	82.4
MS.gene27529.t1	MTR_1g076650	37.162	148	81	2	22	169	13	148	5.63e-20	81.6
MS.gene27529.t1	MTR_8g036075	38.462	156	88	4	15	168	43	192	1.52e-19	82.0
MS.gene27529.t1	MTR_5g079340	36.301	146	80	3	22	167	5	137	2.64e-19	79.7
MS.gene27529.t1	MTR_1g032070	34.483	174	92	4	4	167	19	180	9.24e-18	77.0
MS.gene27529.t1	MTR_8g105230	32.026	153	92	3	12	164	27	167	2.57e-17	75.9
MS.gene27529.t1	MTR_4g103630	32.667	150	88	2	18	167	3	139	2.90e-17	74.3
MS.gene27529.t1	MTR_4g086260	32.192	146	85	2	22	167	58	189	1.23e-16	74.3
MS.gene27529.t1	MTR_6g023460	32.639	144	84	2	24	167	11	141	1.45e-16	72.8
MS.gene27529.t1	MTR_4g127560	54.545	66	30	0	103	168	129	194	2.31e-16	73.6
MS.gene27529.t1	MTR_3g109320	54.930	71	32	0	97	167	108	178	3.05e-16	72.8
MS.gene27529.t1	MTR_5g088320	32.192	146	87	2	22	167	13	146	6.39e-16	71.2
MS.gene27529.t1	MTR_6g025320	32.192	146	87	2	22	167	13	146	6.81e-16	71.2
MS.gene27529.t1	MTR_4g103650	32.432	148	87	2	20	167	1	135	9.17e-16	70.5
MS.gene27529.t1	MTR_4g103655	33.333	144	83	2	24	167	9	139	1.26e-15	70.1
MS.gene27529.t1	MTR_7g087610	32.192	146	87	2	22	167	13	146	1.84e-15	70.1
MS.gene27529.t1	MTR_5g008705	33.571	140	81	3	28	167	1	128	2.05e-15	69.3
MS.gene27529.t1	MTR_3g089090	32.857	140	81	2	29	168	13	139	2.39e-15	69.3
MS.gene27529.t1	MTR_3g089070	32.857	140	81	2	29	168	14	140	2.45e-15	69.3
MS.gene27529.t1	MTR_5g025690	53.846	65	30	0	103	167	131	195	3.54e-15	70.5
MS.gene27529.t1	MTR_8g107110	31.818	154	92	3	22	175	25	165	7.79e-15	68.6
MS.gene27529.t1	MTR_6g079570	31.646	158	92	4	22	175	27	172	1.16e-14	68.6
MS.gene27529.t1	MTR_7g011010	49.231	65	33	0	103	167	133	197	4.11e-14	67.4
MS.gene27529.t1	MTR_1g071150	34.507	142	80	2	26	167	17	145	6.35e-14	65.9
MS.gene27529.t1	MTR_7g074020	30.000	150	91	4	22	170	31	167	7.58e-14	66.2
MS.gene27529.t1	MTR_5g017510	29.885	174	87	6	9	167	29	182	2.63e-13	65.1
MS.gene27529.t1	MTR_5g017560	29.885	174	87	6	9	167	29	182	2.63e-13	65.1
MS.gene27529.t1	MTR_8g066630	29.221	154	100	3	22	175	18	162	2.72e-13	64.7
MS.gene27529.t1	MTR_1g096490	31.973	147	85	2	22	168	336	467	5.78e-13	66.2
MS.gene27529.t1	MTR_4g107490	32.450	151	87	4	22	171	379	515	1.14e-12	65.5
MS.gene27529.t1	MTR_7g090450	32.192	146	92	2	22	167	74	212	1.15e-12	63.9
MS.gene27529.t1	MTR_1g026190	28.947	152	92	3	22	172	388	524	1.28e-12	65.5
MS.gene27529.t1	MTR_6g007613	26.705	176	109	5	3	171	5	167	2.29e-12	62.4
MS.gene27529.t1	MTR_3g098090	29.252	147	89	3	22	168	338	469	2.34e-12	64.3
MS.gene27529.t1	MTR_8g099095	30.405	148	87	3	22	168	372	504	2.65e-12	64.3
MS.gene27529.t1	MTR_0028s0170	27.211	147	93	2	22	168	384	516	3.03e-12	64.3
MS.gene27529.t1	MTR_3g051770	28.105	153	93	3	22	169	389	529	3.03e-12	64.3
MS.gene27529.t1	MTR_1g054865	30.000	150	88	3	22	170	467	600	3.47e-12	63.9
MS.gene27529.t1	MTR_4g132070	27.703	148	93	2	22	169	397	530	4.20e-12	63.9
MS.gene27529.t1	MTR_3g098070	27.891	147	91	2	22	168	335	466	7.95e-12	62.8
MS.gene27529.t1	MTR_5g092810	27.027	148	94	2	22	169	398	531	9.30e-12	62.8
MS.gene27529.t1	MTR_3g110008	49.296	71	36	0	97	167	108	178	1.24e-11	60.5
MS.gene27529.t1	MTR_4g112460	31.544	149	88	4	21	167	11	147	1.30e-11	60.1
MS.gene27529.t1	MTR_5g089320	26.712	146	93	2	22	167	374	505	1.39e-11	62.4
MS.gene27529.t1	MTR_5g009830	29.730	148	88	3	22	168	372	504	1.65e-11	62.0
MS.gene27529.t1	MTR_5g017550	29.444	180	95	7	4	167	18	181	1.81e-11	60.1
MS.gene27529.t1	MTR_1g055255	30.612	147	85	3	22	167	430	560	2.26e-11	61.6
MS.gene27529.t1	MTR_3g083470	42.466	73	38	2	95	167	149	217	3.90e-11	60.1
MS.gene27529.t1	MTR_1g041150	27.703	148	90	3	22	168	424	555	4.85e-11	60.8
MS.gene27529.t1	MTR_4g132040	25.000	148	97	2	22	169	401	534	6.73e-11	60.5
MS.gene27529.t1	MTR_3g109985	47.887	71	37	0	97	167	108	178	8.77e-11	58.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene27529.t1	AT4G20780	59.887	177	63	3	7	175	15	191	3.26e-69	208
MS.gene27529.t1	AT5G44460	57.558	172	73	0	3	174	10	181	4.36e-66	200
MS.gene27529.t1	AT2G43290	39.506	162	93	1	14	175	58	214	5.64e-34	119
MS.gene27529.t1	AT1G05990	38.158	152	85	1	17	168	1	143	2.88e-27	100
MS.gene27529.t1	AT3G59440	36.025	161	92	1	14	174	44	193	5.07e-27	101
MS.gene27529.t1	AT4G03290	36.478	159	94	1	17	175	1	152	6.91e-26	97.1
MS.gene27529.t1	AT3G07490	36.184	152	87	1	17	168	1	142	2.17e-23	90.9
MS.gene27529.t1	AT1G66400	36.301	146	83	2	22	167	16	151	2.99e-22	87.8
MS.gene27529.t1	AT4G12860	34.641	153	90	1	22	174	6	148	2.18e-21	85.5
MS.gene27529.t1	AT5G37770	36.486	148	82	3	22	167	18	155	3.74e-21	85.1
MS.gene27529.t1	AT5G37770	36.486	148	82	3	22	167	18	155	3.74e-21	85.1
MS.gene27529.t1	AT3G22930	34.459	148	85	2	20	167	34	169	2.81e-17	75.5
MS.gene27529.t1	AT1G24620	34.395	157	91	2	11	167	27	171	5.59e-17	74.7
MS.gene27529.t1	AT4G14640	34.694	147	84	2	21	167	13	147	9.75e-17	73.6
MS.gene27529.t1	AT1G18530	31.818	154	91	3	21	172	7	148	1.67e-16	72.8
MS.gene27529.t1	AT5G37780	32.192	146	87	2	22	167	13	146	2.02e-16	72.4
MS.gene27529.t1	AT1G66410	32.192	146	87	2	22	167	13	146	2.02e-16	72.4
MS.gene27529.t1	AT1G21550	36.842	152	80	4	22	167	11	152	2.83e-16	72.4
MS.gene27529.t1	AT5G42380	32.237	152	92	2	17	168	45	185	3.56e-16	72.8
MS.gene27529.t1	AT3G43810	31.788	151	91	2	22	172	13	151	4.42e-16	73.2
MS.gene27529.t1	AT2G27030	32.192	146	87	2	22	167	13	146	6.24e-16	72.0
MS.gene27529.t1	AT3G43810	32.192	146	87	2	22	167	13	146	7.13e-16	71.2
MS.gene27529.t1	AT3G56800	32.192	146	87	2	22	167	13	146	8.62e-16	70.9
MS.gene27529.t1	AT2G27030	32.192	146	87	2	22	167	13	146	8.62e-16	70.9
MS.gene27529.t1	AT2G41110	32.192	146	87	2	22	167	13	146	8.62e-16	70.9
MS.gene27529.t1	AT5G21274	32.192	146	87	2	22	167	13	146	1.09e-15	70.5
MS.gene27529.t1	AT1G73630	29.167	168	99	4	2	169	5	152	2.62e-15	70.1
MS.gene27529.t1	AT1G18210	31.210	157	78	4	18	167	20	153	2.78e-15	70.1
MS.gene27529.t1	AT1G18210	31.210	157	78	4	18	167	20	153	2.78e-15	70.1
MS.gene27529.t1	AT5G17470	30.667	150	94	2	20	169	1	140	3.86e-15	68.9
MS.gene27529.t1	AT3G29000	43.269	104	51	3	70	170	94	192	4.11e-15	70.1
MS.gene27529.t1	AT3G51920	29.577	142	88	2	26	167	17	146	6.23e-15	68.6
MS.gene27529.t1	AT5G12180	29.252	147	90	2	22	168	379	511	8.71e-15	71.6
MS.gene27529.t1	AT4G37010	28.824	170	105	5	3	171	11	165	9.64e-15	68.6
MS.gene27529.t1	AT4G37010	28.824	170	105	5	3	171	15	169	1.03e-14	68.6
MS.gene27529.t1	AT2G15680	30.464	151	91	2	22	172	51	187	1.63e-14	68.6
MS.gene27529.t1	AT1G32250	30.986	142	92	3	22	163	17	152	2.21e-14	67.4
MS.gene27529.t1	AT2G38910	30.201	149	89	3	22	170	440	573	9.74e-14	68.6
MS.gene27529.t1	AT1G35670	31.293	147	86	2	22	168	332	463	1.49e-13	68.2
MS.gene27529.t1	AT2G41110	30.380	158	86	3	22	167	13	158	2.60e-13	64.7
MS.gene27529.t1	AT5G19360	29.252	147	90	2	22	168	374	506	2.91e-13	67.0
MS.gene27529.t1	AT2G36180	31.373	153	94	3	22	173	1	143	3.97e-13	63.9
MS.gene27529.t1	AT5G37780	29.193	161	87	3	22	167	13	161	4.10e-13	64.3
MS.gene27529.t1	AT4G09570	30.612	147	87	2	22	168	331	462	1.02e-12	65.5
MS.gene27529.t1	AT2G31500	33.140	172	92	6	8	171	355	511	1.29e-12	65.5
MS.gene27529.t1	AT5G39670	45.070	71	39	0	97	167	129	199	1.30e-12	63.5
MS.gene27529.t1	AT4G04695	27.333	150	91	4	22	169	337	470	1.61e-12	65.1
MS.gene27529.t1	AT1G50700	31.544	149	86	4	22	169	379	512	1.72e-12	65.1
MS.gene27529.t1	AT3G50360	26.190	168	108	4	5	171	13	165	2.17e-12	62.4
MS.gene27529.t1	AT3G51850	29.333	150	93	2	22	171	360	496	3.45e-12	63.9
MS.gene27529.t1	AT3G20410	30.405	148	89	3	22	169	397	530	3.82e-12	63.9
MS.gene27529.t1	AT3G20410	30.405	148	89	3	22	169	397	530	3.82e-12	63.9
MS.gene27529.t1	AT4G04710	27.211	147	93	2	22	168	338	470	5.54e-12	63.5
MS.gene27529.t1	AT4G04710	27.211	147	93	2	22	168	351	483	5.85e-12	63.5
MS.gene27529.t1	AT4G04710	27.211	147	93	2	22	168	324	456	6.22e-12	63.2
MS.gene27529.t1	AT4G04700	28.105	153	90	4	22	171	337	472	7.31e-12	63.2
MS.gene27529.t1	AT5G04870	28.758	153	92	4	22	173	456	592	1.69e-11	62.0
MS.gene27529.t1	AT4G14640	34.351	131	74	2	37	167	11	129	2.65e-11	58.5
MS.gene27529.t1	AT5G37780	31.298	131	78	2	37	167	15	133	3.07e-11	58.5
MS.gene27529.t1	AT5G37780	27.326	172	87	3	22	167	13	172	4.12e-11	58.9
MS.gene27529.t1	AT3G22930	33.019	106	61	1	20	125	34	129	4.48e-11	58.2
MS.gene27529.t1	AT1G50700	30.909	165	92	6	22	169	379	538	4.73e-11	60.8
MS.gene27529.t1	AT1G66410	31.298	131	78	2	37	167	38	156	5.11e-11	58.5
MS.gene27529.t1	AT1G76640	30.612	147	92	3	22	168	23	159	5.38e-11	58.5
MS.gene27529.t1	AT4G04720	29.333	150	88	3	22	169	385	518	6.56e-11	60.5
MS.gene27529.t1	AT4G04720	29.333	150	88	3	22	169	385	518	6.56e-11	60.5
MS.gene27529.t1	AT5G23580	29.252	147	89	3	22	168	328	459	7.06e-11	60.1
MS.gene27529.t1	AT3G25600	26.623	154	99	3	21	172	12	153	7.67e-11	58.2
MS.gene27529.t1	AT4G21940	28.667	150	89	3	22	169	407	540	8.41e-11	60.1
MS.gene27529.t1	AT4G21940	28.667	150	89	3	22	169	407	540	8.52e-11	60.1
MS.gene27529.t1	AT2G41100	29.730	148	95	2	23	163	68	213	8.89e-11	59.7
MS.gene27529.t1	AT2G41100	29.730	148	95	2	23	163	68	213	8.89e-11	59.7
MS.gene27529.t1	AT2G41100	29.730	148	95	2	23	163	68	213	8.89e-11	59.7
MS.gene27529.t1	AT4G23650	25.676	148	94	3	22	168	384	516	9.69e-11	60.1

Find 39 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACAAAATGAAGATCTA+TGG	0.299563	7.3:+30943849	MS.gene27529:CDS
AAGGAATTGCAAGTTGTGTT+AGG	0.304824	7.3:+30943920	MS.gene27529:CDS
ACGACTTTGATGGCGATGAT+AGG	0.357282	7.3:-30942875	None:intergenic
CGAAGCCGAAACGACTTTGA+TGG	0.412298	7.3:-30942885	None:intergenic
CAAGTTGTGTTAGGGAAGCT+TGG	0.430185	7.3:+30943929	MS.gene27529:CDS
TACGTTAGTCCTACGTTGCC+CGG	0.436515	7.3:-30943755	None:intergenic
CATCGCCATCAAAGTCGTTT+CGG	0.444047	7.3:+30942880	MS.gene27529:CDS
ATCCCAACAGGTTGAGAGCC+TGG	0.454338	7.3:-30942998	None:intergenic
GTGGGATTGCACGAGTCACT+TGG	0.455617	7.3:+30943788	MS.gene27529:CDS
AGATCTATGGGAAGCATTCA+AGG	0.473196	7.3:+30943862	MS.gene27529:CDS
TGGGATTGCACGAGTCACTT+GGG	0.477663	7.3:+30943789	MS.gene27529:CDS
AGGAATTGCAAGTTGTGTTA+GGG	0.482752	7.3:+30943921	MS.gene27529:CDS
ACTCAGCTTCTAATCCCAAC+AGG	0.488098	7.3:-30943010	None:intergenic
AGCCAGGCTCTCAACCTGTT+GGG	0.492879	7.3:+30942996	MS.gene27529:CDS
TGAACTAACTCACTTGATCA+TGG	0.502232	7.3:-30943048	None:intergenic
AACACAAAATGAAGATCTAT+GGG	0.513461	7.3:+30943850	MS.gene27529:CDS
AAGCCAGGCTCTCAACCTGT+TGG	0.523083	7.3:+30942995	MS.gene27529:CDS
TTCAAGGTGTTTGATGAAGA+TGG	0.525519	7.3:+30943878	MS.gene27529:CDS
GGGAAGCTTGGACTTGTGGA+AGG	0.530012	7.3:+30943941	MS.gene27529:CDS
TGGCAGGTCATACATAAAGC+CGG	0.534241	7.3:+30943736	MS.gene27529:intron
AACTGTGGAGGAAATAAGCC+AGG	0.538862	7.3:+30942980	MS.gene27529:CDS
GGCAGGTCATACATAAAGCC+GGG	0.555773	7.3:+30943737	MS.gene27529:intron
GTTAGGGAAGCTTGGACTTG+TGG	0.573473	7.3:+30943937	MS.gene27529:CDS
TGTCAAATATTCGTCGCAGA+CGG	0.580366	7.3:-30942929	None:intergenic
GAAAATCAACACGACCATCA+TGG	0.580986	7.3:-30944012	None:intergenic
ACTAACGTATGAAGATTTCG+TGG	0.591570	7.3:+30943769	MS.gene27529:CDS
ATCAACACGACCATCATGGT+TGG	0.596881	7.3:-30944008	None:intergenic
TACATAAAGCCGGGCAACGT+AGG	0.604345	7.3:+30943746	MS.gene27529:CDS
GGAAGCTTGGACTTGTGGAA+GGG	0.609692	7.3:+30943942	MS.gene27529:CDS
TGATGGTTACATATCAGCTA+AGG	0.610274	7.3:+30943901	MS.gene27529:CDS
TCTGTTGATACCAACCATGA+TGG	0.617665	7.3:+30943998	MS.gene27529:CDS
CTAACGTATGAAGATTTCGT+GGG	0.618462	7.3:+30943770	MS.gene27529:CDS
GGGATTGCACGAGTCACTTG+GGG	0.634228	7.3:+30943790	MS.gene27529:CDS
GTGTTTGATGAAGATGGTGA+TGG	0.643172	7.3:+30943884	MS.gene27529:CDS
ATTAGAAGCTGAGTTCAAAG+AGG	0.645740	7.3:+30943019	MS.gene27529:CDS
TGGAGATTCAATGATAACTG+TGG	0.653033	7.3:+30942965	MS.gene27529:CDS
AGATTCAATGATAACTGTGG+AGG	0.664899	7.3:+30942968	MS.gene27529:CDS
TCAAGAGCTAGAGACAGTAG+TGG	0.680719	7.3:-30944059	None:intergenic
AGTGGCTTCAGAAAATGATG+AGG	0.701725	7.3:+30943826	MS.gene27529:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATATACTAATAAAAATTG+TGG	+	chr7.3:30943716-30943735	MS.gene27529:intron	10.0%
!!	TATATAATTGAGTAAATGAA+AGG	-	chr7.3:30943080-30943099	None:intergenic	15.0%
!!!	TAATAATTAGAGTTTGAAAT+TGG	+	chr7.3:30943693-30943712	MS.gene27529:intron	15.0%
!!!	TTCAAAATCATTCTAATTTT+TGG	+	chr7.3:30943320-30943339	MS.gene27529:intron	15.0%
!!!	TTTTTAATTCATACTTCTAA+TGG	+	chr7.3:30943108-30943127	MS.gene27529:intron	15.0%
!!!	TTTTTAATTCATACTTTCAA+TGG	-	chr7.3:30943148-30943167	None:intergenic	15.0%
!!	TCTTGATATTAAAGCAAAAT+CGG	-	chr7.3:30943413-30943432	None:intergenic	20.0%
!!!	ATTAGAATGATTTTGAATTG+TGG	-	chr7.3:30943317-30943336	None:intergenic	20.0%
!!!	CAGTAATATAAAGAATTTTG+AGG	-	chr7.3:30943554-30943573	None:intergenic	20.0%
!	AAACACAAAATGAAGATCTA+TGG	+	chr7.3:30943849-30943868	MS.gene27529:CDS	25.0%
!	AACACAAAATGAAGATCTAT+GGG	+	chr7.3:30943850-30943869	MS.gene27529:CDS	25.0%
!	AGACAAATTAAAGAGAGTAA+AGG	-	chr7.3:30943631-30943650	None:intergenic	25.0%
!	ATACTAATAAAAATTGTGGC+AGG	+	chr7.3:30943720-30943739	MS.gene27529:intron	25.0%
!	GATATGTACAATGATAATTG+TGG	-	chr7.3:30943606-30943625	None:intergenic	25.0%
!	GTGCAATATAAAGATTTCTA+AGG	+	chr7.3:30943366-30943385	MS.gene27529:intron	25.0%
!	TTTGACATGTTTGACAAAAA+TGG	+	chr7.3:30942945-30942964	MS.gene27529:CDS	25.0%
!!	CTTCTAATGGTTTGAAATTA+CGG	+	chr7.3:30943121-30943140	MS.gene27529:intron	25.0%
!!!	TGTTGATTTTCATGAATTCA+AGG	+	chr7.3:30944024-30944043	MS.gene27529:CDS	25.0%
	AATTGAGTAAATGAAAGGTG+TGG	-	chr7.3:30943075-30943094	None:intergenic	30.0%
	CCTTATATCGTGTAAAAAAG+TGG	+	chr7.3:30943498-30943517	MS.gene27529:intron	30.0%
	GACAGTCGTAATTATGTTAT+GGG	+	chr7.3:30943475-30943494	MS.gene27529:intron	30.0%
	TGACAGTCGTAATTATGTTA+TGG	+	chr7.3:30943474-30943493	MS.gene27529:intron	30.0%
!	ACGAAGTGTTTAAATAGTAG+TGG	-	chr7.3:30943655-30943674	None:intergenic	30.0%
!	ATGATTTTGAATTGTGGTTG+CGG	-	chr7.3:30943311-30943330	None:intergenic	30.0%
!!!	CCACTTTTTTACACGATATA+AGG	-	chr7.3:30943501-30943520	None:intergenic	30.0%
	AAGGAATTGCAAGTTGTGTT+AGG	+	chr7.3:30943920-30943939	MS.gene27529:CDS	35.0%
	ACGACTGTCATGTATAATCA+TGG	-	chr7.3:30943464-30943483	None:intergenic	35.0%
	ACTAACGTATGAAGATTTCG+TGG	+	chr7.3:30943769-30943788	MS.gene27529:CDS	35.0%
	ACTGTCATGTATAATCATGG+TGG	-	chr7.3:30943461-30943480	None:intergenic	35.0%
	AGATTCAATGATAACTGTGG+AGG	+	chr7.3:30942968-30942987	MS.gene27529:CDS	35.0%
	AGGAATTGCAAGTTGTGTTA+GGG	+	chr7.3:30943921-30943940	MS.gene27529:CDS	35.0%
	ATTAATTCACGCTGCATCAA+TGG	+	chr7.3:30943237-30943256	MS.gene27529:intron	35.0%
	ATTAGAAGCTGAGTTCAAAG+AGG	+	chr7.3:30943019-30943038	MS.gene27529:CDS	35.0%
	CTAACGTATGAAGATTTCGT+GGG	+	chr7.3:30943770-30943789	MS.gene27529:CDS	35.0%
	GAGAAAAGACTAGATATGTG+AGG	+	chr7.3:30943182-30943201	MS.gene27529:intron	35.0%
	TGAACTAACTCACTTGATCA+TGG	-	chr7.3:30943051-30943070	None:intergenic	35.0%
	TGATGGTTACATATCAGCTA+AGG	+	chr7.3:30943901-30943920	MS.gene27529:CDS	35.0%
	TGGAGATTCAATGATAACTG+TGG	+	chr7.3:30942965-30942984	MS.gene27529:CDS	35.0%
!	TTCAAGGTGTTTGATGAAGA+TGG	+	chr7.3:30943878-30943897	MS.gene27529:CDS	35.0%
	AGTGGCTTCAGAAAATGATG+AGG	+	chr7.3:30943826-30943845	MS.gene27529:CDS	40.0%
	GAAAATCAACACGACCATCA+TGG	-	chr7.3:30944015-30944034	None:intergenic	40.0%
	GTGTTTGATGAAGATGGTGA+TGG	+	chr7.3:30943884-30943903	MS.gene27529:CDS	40.0%
	TACAATAAGCGCAATCGTAG+TGG	+	chr7.3:30943279-30943298	MS.gene27529:intron	40.0%
	TCTGTTGATACCAACCATGA+TGG	+	chr7.3:30943998-30944017	MS.gene27529:CDS	40.0%
	TGTCAAATATTCGTCGCAGA+CGG	-	chr7.3:30942932-30942951	None:intergenic	40.0%
!	TGGGGATACATATTTTGCAG+TGG	+	chr7.3:30943808-30943827	MS.gene27529:CDS	40.0%
!!	AGATCTATGGGAAGCATTCA+AGG	+	chr7.3:30943862-30943881	MS.gene27529:CDS	40.0%
	AACTGTGGAGGAAATAAGCC+AGG	+	chr7.3:30942980-30942999	MS.gene27529:CDS	45.0%
	ACTCAGCTTCTAATCCCAAC+AGG	-	chr7.3:30943013-30943032	None:intergenic	45.0%
	AGGTCTCTCTAACGACATCA+TGG	-	chr7.3:30943534-30943553	None:intergenic	45.0%
	ATCAACACGACCATCATGGT+TGG	-	chr7.3:30944011-30944030	None:intergenic	45.0%
	CAAGTTGTGTTAGGGAAGCT+TGG	+	chr7.3:30943929-30943948	MS.gene27529:CDS	45.0%
	CATCGCCATCAAAGTCGTTT+CGG	+	chr7.3:30942880-30942899	MS.gene27529:CDS	45.0%
	TCAAGAGCTAGAGACAGTAG+TGG	-	chr7.3:30944062-30944081	None:intergenic	45.0%
	TCCTAATCTCAATTGCGCGT+GGG	+	chr7.3:30943344-30943363	MS.gene27529:intron	45.0%
	TGGCAGGTCATACATAAAGC+CGG	+	chr7.3:30943736-30943755	MS.gene27529:intron	45.0%
	TTCCTAATCTCAATTGCGCG+TGG	+	chr7.3:30943343-30943362	MS.gene27529:intron	45.0%
!!	ACGACTTTGATGGCGATGAT+AGG	-	chr7.3:30942878-30942897	None:intergenic	45.0%
	ACCCACGCGCAATTGAGATT+AGG	-	chr7.3:30943348-30943367	None:intergenic	50.0%
	CGAAGCCGAAACGACTTTGA+TGG	-	chr7.3:30942888-30942907	None:intergenic	50.0%
	GGAAGCTTGGACTTGTGGAA+GGG	+	chr7.3:30943942-30943961	MS.gene27529:CDS	50.0%
	GGCAGGTCATACATAAAGCC+GGG	+	chr7.3:30943737-30943756	MS.gene27529:intron	50.0%
	GTTAGGGAAGCTTGGACTTG+TGG	+	chr7.3:30943937-30943956	MS.gene27529:CDS	50.0%
	TACATAAAGCCGGGCAACGT+AGG	+	chr7.3:30943746-30943765	MS.gene27529:CDS	50.0%
	TACGTTAGTCCTACGTTGCC+CGG	-	chr7.3:30943758-30943777	None:intergenic	50.0%
	TGGGATTGCACGAGTCACTT+GGG	+	chr7.3:30943789-30943808	MS.gene27529:CDS	50.0%
	AAGCCAGGCTCTCAACCTGT+TGG	+	chr7.3:30942995-30943014	MS.gene27529:CDS	55.0%
	AGCCAGGCTCTCAACCTGTT+GGG	+	chr7.3:30942996-30943015	MS.gene27529:CDS	55.0%
	GGGAAGCTTGGACTTGTGGA+AGG	+	chr7.3:30943941-30943960	MS.gene27529:CDS	55.0%
	GGGATTGCACGAGTCACTTG+GGG	+	chr7.3:30943790-30943809	MS.gene27529:CDS	55.0%
	GTGGGATTGCACGAGTCACT+TGG	+	chr7.3:30943788-30943807	MS.gene27529:CDS	55.0%
!	ATCCCAACAGGTTGAGAGCC+TGG	-	chr7.3:30943001-30943020	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	30942870	30944081	30942870	ID=MS.gene27529
chr7.3	mRNA	30942870	30944081	30942870	ID=MS.gene27529.t1;Parent=MS.gene27529
chr7.3	exon	30942870	30943057	30942870	ID=MS.gene27529.t1.exon1;Parent=MS.gene27529.t1
chr7.3	CDS	30942870	30943057	30942870	ID=cds.MS.gene27529.t1;Parent=MS.gene27529.t1
chr7.3	exon	30943742	30944081	30943742	ID=MS.gene27529.t1.exon2;Parent=MS.gene27529.t1
chr7.3	CDS	30943742	30944081	30943742	ID=cds.MS.gene27529.t1;Parent=MS.gene27529.t1

Gene Sequence

>MS.gene27529

ATGAACCTATCATCGCCATCAAAGTCGTTTCGGCTTCGAAGTCAGAGTCTCAACTCGCTCCGTCTGCGACGAATATTTGACATGTTTGACAAAAATGGAGATTCAATGATAACTGTGGAGGAAATAAGCCAGGCTCTCAACCTGTTGGGATTAGAAGCTGAGTTCAAAGAGGTTGATTCCATGATCAAGTGAGTTAGTTCATCCACACCTTTCATTTACTCAATTATATATATTCATATTTTTAATTCATACTTCTAATGGTTTGAAATTACGGACCATTGAAAGTATGAATTAAAAATACGAGATTATAGAGAGAAAAGACTAGATATGTGAGGTATATGATAAATAATATTTGATGCTGACAATAATTAATTCACGCTGCATCAATGGCAATACATATCACAACAGCTACAATAAGCGCAATCGTAGTGGTTGCGACCGCAACCACAATTCAAAATCATTCTAATTTTTGGTTCCTAATCTCAATTGCGCGTGGGTGCAATATAAAGATTTCTAAGGTCTATACAAACGCAATTTCAGCCGATTTTGCTTTAATATCAAGATTCACACATTAACAACAATTTACAACCACCATGATTATACATGACAGTCGTAATTATGTTATGGGCCTTATATCGTGTAAAAAAGTGGTTGATTGCGACCATGATGTCGTTAGAGAGACCTCAAAATTCTTTATATTACTGTTGCAATTATCATTGTACATAAGATAAGACCACAATTATCATTGTACATATCTTCCTTTACTCTCTTTAATTTGTCTTCCACTACTATTTAAACACTTCGTTATTGCTAGTTTTTACAATAATAATTAGAGTTTGAAATTGGAAATATACTAATAAAAATTGTGGCAGGTCATACATAAAGCCGGGCAACGTAGGACTAACGTATGAAGATTTCGTGGGATTGCACGAGTCACTTGGGGATACATATTTTGCAGTGGCTTCAGAAAATGATGAGGAAACACAAAATGAAGATCTATGGGAAGCATTCAAGGTGTTTGATGAAGATGGTGATGGTTACATATCAGCTAAGGAATTGCAAGTTGTGTTAGGGAAGCTTGGACTTGTGGAAGGGAACTTGATTGATAATGTTCAACGAATGATTTTGTCTGTTGATACCAACCATGATGGTCGTGTTGATTTTCATGAATTCAAGGATATGATGCGCACCACTACTGTCTCTAGCTCTTGA

Protein sequence

>MS.gene27529.t1

MNLSSPSKSFRLRSQSLNSLRLRRIFDMFDKNGDSMITVEEISQALNLLGLEAEFKEVDSMIKSYIKPGNVGLTYEDFVGLHESLGDTYFAVASENDEETQNEDLWEAFKVFDEDGDGYISAKELQVVLGKLGLVEGNLIDNVQRMILSVDTNHDGRVDFHEFKDMMRTTTVSSS