AlfalfaGEDB | MS.gene040127

M. sativa cultivar XinJiangDaYe / MS.gene040127

KEGG: K13448
GO: GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872
PFAM: PF13499.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040127.t1	XP_003631098.1	98.2	56	0	1	1	55	1	56	6.90E-19	104

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040127.t1	G7LDC5	98.2	56	0	1	1	55	1	56	4.9e-19	104.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene040127	MS.gene35562	PPI
MS.gene040127	MS.gene92775	PPI
MS.gene008225	MS.gene040127	PPI
MS.gene040127	MS.gene53662	PPI
MS.gene64324	MS.gene040127	PPI
MS.gene040127	MS.gene63281	PPI
MS.gene040127	MS.gene060446	PPI
MS.gene040127	MS.gene020515	PPI
MS.gene022455	MS.gene040127	PPI
MS.gene040127	MS.gene013748	PPI
MS.gene040127	MS.gene008225	PPI
MS.gene040127	MS.gene21696	PPI
MS.gene040127	MS.gene29793	PPI
MS.gene040127	MS.gene98294	PPI
MS.gene040127	MS.gene05284	PPI
MS.gene040127	MS.gene22553	PPI
MS.gene040127	MS.gene074045	PPI
MS.gene040127	MS.gene03228	PPI
MS.gene80011	MS.gene040127	PPI
MS.gene070168	MS.gene040127	PPI
MS.gene003880	MS.gene040127	PPI
MS.gene040127	MS.gene000738	PPI
MS.gene040127	MS.gene46237	PPI
MS.gene040127	MS.gene056383	PPI
MS.gene040127	MS.gene64317	PPI
MS.gene040127	MS.gene036915	PPI
MS.gene040127	MS.gene025777	PPI
MS.gene040127	MS.gene040331	PPI
MS.gene21155	MS.gene040127	PPI
MS.gene040127	MS.gene63000	PPI
MS.gene040127	MS.gene93087	PPI
MS.gene004899	MS.gene040127	PPI
MS.gene040127	MS.gene046988	PPI
MS.gene040127	MS.gene057293	PPI
MS.gene040127	MS.gene74452	PPI
MS.gene040127	MS.gene09934	PPI
MS.gene040127	MS.gene58906	PPI
MS.gene040127	MS.gene79028	PPI
MS.gene070167	MS.gene040127	PPI
MS.gene040127	MS.gene64311	PPI
MS.gene040127	MS.gene49271	PPI
MS.gene040127	MS.gene053319	PPI
MS.gene040127	MS.gene026940	PPI
MS.gene040127	MS.gene000724	PPI
MS.gene040127	MS.gene65954	PPI
MS.gene040127	MS.gene98295	PPI
MS.gene040127	MS.gene022456	PPI
MS.gene040127	MS.gene001246	PPI
MS.gene040127	MS.gene64327	PPI
MS.gene040127	MS.gene28338	PPI
MS.gene040127	MS.gene041795	PPI
MS.gene68345	MS.gene040127	PPI
MS.gene040127	MS.gene85596	PPI
MS.gene040127	MS.gene96922	PPI
MS.gene040127	MS.gene25186	PPI
MS.gene040127	MS.gene80013	PPI
MS.gene040127	MS.gene55496	PPI
MS.gene040127	MS.gene025797	PPI
MS.gene040127	MS.gene21931	PPI
MS.gene040127	MS.gene27516	PPI
MS.gene040127	MS.gene64314	PPI
MS.gene62258	MS.gene040127	PPI
MS.gene040127	MS.gene09960	PPI
MS.gene040127	MS.gene94551	PPI
MS.gene038456	MS.gene040127	PPI
MS.gene040127	MS.gene62540	PPI
MS.gene040127	MS.gene074100	PPI
MS.gene040127	MS.gene53650	PPI
MS.gene040127	MS.gene066863	PPI
MS.gene040127	MS.gene02545	PPI
MS.gene040127	MS.gene04915	PPI
MS.gene040127	MS.gene61009	PPI
MS.gene040127	MS.gene35563	PPI
MS.gene040127	MS.gene057167	PPI
MS.gene040127	MS.gene016268	PPI
MS.gene040127	MS.gene93763	PPI
MS.gene58860	MS.gene040127	PPI
MS.gene040127	MS.gene49270	PPI
MS.gene040127	MS.gene64307	PPI
MS.gene64327	MS.gene040127	PPI
MS.gene040127	MS.gene024717	PPI
MS.gene040127	MS.gene29794	PPI
MS.gene040127	MS.gene71511	PPI
MS.gene040127	MS.gene033361	PPI
MS.gene040127	MS.gene87673	PPI
MS.gene040127	MS.gene53659	PPI
MS.gene040127	MS.gene98972	PPI
MS.gene040127	MS.gene061768	PPI
MS.gene040127	MS.gene89216	PPI
MS.gene040127	MS.gene64308	PPI
MS.gene040127	MS.gene009021	PPI
MS.gene040127	MS.gene47195	PPI
MS.gene040127	MS.gene47134	PPI
MS.gene040127	MS.gene017446	PPI
MS.gene040127	MS.gene96914	PPI
MS.gene040127	MS.gene066862	PPI
MS.gene040127	MS.gene96913	PPI
MS.gene011400	MS.gene040127	PPI
MS.gene040127	MS.gene07422	PPI
MS.gene040127	MS.gene062239	PPI
MS.gene040127	MS.gene015658	PPI
MS.gene040127	MS.gene64316	PPI
MS.gene040127	MS.gene64313	PPI
MS.gene040127	MS.gene80012	PPI
MS.gene83068	MS.gene040127	PPI
MS.gene040127	MS.gene061261	PPI
MS.gene62689	MS.gene040127	PPI
MS.gene97948	MS.gene040127	PPI
MS.gene54637	MS.gene040127	PPI
MS.gene000738	MS.gene040127	PPI
MS.gene64307	MS.gene040127	PPI
MS.gene67281	MS.gene040127	PPI
MS.gene040127	MS.gene036930	PPI
MS.gene040127	MS.gene21932	PPI
MS.gene040127	MS.gene052672	PPI
MS.gene040127	MS.gene026618	PPI
MS.gene04917	MS.gene040127	PPI
MS.gene46886	MS.gene040127	PPI
MS.gene026530	MS.gene040127	PPI
MS.gene040127	MS.gene53648	PPI
MS.gene92789	MS.gene040127	PPI
MS.gene040127	MS.gene27529	PPI
MS.gene040127	MS.gene015470	PPI
MS.gene040127	MS.gene008831	PPI
MS.gene040127	MS.gene55545	PPI
MS.gene040127	MS.gene056461	PPI
MS.gene040127	MS.gene64310	PPI
MS.gene040127	MS.gene29459	PPI
MS.gene040127	MS.gene71207	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040127.t1	MTR_8g107110	96.988	166	3	2	1	165	1	165	1.37e-113	319
MS.gene040127.t1	MTR_6g079570	68.750	160	46	2	1	156	1	160	6.34e-71	211
MS.gene040127.t1	MTR_5g079340	59.259	135	55	0	22	156	3	137	2.07e-50	158
MS.gene040127.t1	MTR_3g067610	54.286	140	61	1	20	159	2	138	1.47e-48	154
MS.gene040127.t1	MTR_1g046950	57.246	138	56	2	22	156	3	140	9.97e-47	149
MS.gene040127.t1	MTR_1g047100	54.015	137	61	1	22	156	3	139	1.39e-46	149
MS.gene040127.t1	MTR_1g032070	46.835	158	75	3	7	160	32	184	1.83e-38	130
MS.gene040127.t1	MTR_4g067270	45.714	140	73	2	20	156	2	141	8.88e-34	116
MS.gene040127.t1	MTR_8g105230	46.970	132	69	1	23	153	36	167	1.32e-33	117
MS.gene040127.t1	MTR_8g105230	42.857	63	36	0	93	155	34	96	5.47e-11	58.5
MS.gene040127.t1	MTR_1g041285	47.407	135	70	1	23	156	12	146	2.03e-33	115
MS.gene040127.t1	MTR_5g008705	49.606	127	63	1	31	156	2	128	2.41e-33	115
MS.gene040127.t1	MTR_1g076650	47.761	134	69	1	24	156	13	146	3.64e-33	115
MS.gene040127.t1	MTR_7g087610	43.704	135	75	1	23	156	12	146	1.65e-32	113
MS.gene040127.t1	MTR_7g087610	43.284	67	38	0	90	156	7	73	6.05e-12	60.5
MS.gene040127.t1	MTR_5g088320	44.444	135	74	1	23	156	12	146	2.12e-32	113
MS.gene040127.t1	MTR_5g088320	43.284	67	38	0	90	156	7	73	7.78e-12	60.1
MS.gene040127.t1	MTR_6g025320	44.444	135	74	1	23	156	12	146	2.37e-32	113
MS.gene040127.t1	MTR_6g025320	43.284	67	38	0	90	156	7	73	7.08e-12	60.1
MS.gene040127.t1	MTR_7g075040	43.293	164	80	6	5	158	32	192	1.02e-29	107
MS.gene040127.t1	MTR_7g089760	40.000	140	81	2	20	156	2	141	1.14e-29	106
MS.gene040127.t1	MTR_5g017550	37.662	154	95	1	8	161	34	186	1.44e-29	107
MS.gene040127.t1	MTR_4g086260	38.889	144	87	1	16	159	50	192	4.59e-29	106
MS.gene040127.t1	MTR_3g089090	39.695	131	79	0	27	157	9	139	4.69e-29	104
MS.gene040127.t1	MTR_3g089070	39.695	131	79	0	27	157	10	140	5.31e-29	104
MS.gene040127.t1	MTR_6g023460	41.538	130	76	0	27	156	12	141	7.69e-29	103
MS.gene040127.t1	MTR_5g008695	50.000	112	53	1	47	155	1	112	1.57e-28	102
MS.gene040127.t1	MTR_4g103650	40.000	135	81	0	23	157	2	136	1.96e-28	102
MS.gene040127.t1	MTR_4g103630	40.000	135	81	0	23	157	6	140	1.04e-27	100
MS.gene040127.t1	MTR_5g017510	37.589	141	87	1	22	161	47	187	2.18e-27	101
MS.gene040127.t1	MTR_5g017560	37.589	141	87	1	22	161	47	187	2.18e-27	101
MS.gene040127.t1	MTR_4g115170	40.000	175	84	4	3	158	46	218	2.80e-27	102
MS.gene040127.t1	MTR_8g066630	35.000	140	87	1	21	156	15	154	5.54e-27	99.8
MS.gene040127.t1	MTR_4g103655	39.259	135	82	0	23	157	6	140	7.24e-27	99.0
MS.gene040127.t1	MTR_8g036075	41.958	143	74	3	23	156	49	191	1.56e-26	99.8
MS.gene040127.t1	MTR_2g098890	40.845	142	79	2	20	156	61	202	4.15e-26	99.0
MS.gene040127.t1	MTR_0168s0120	44.545	110	60	1	48	156	1	110	6.55e-25	93.2
MS.gene040127.t1	MTR_6g025320	44.545	110	60	1	48	156	1	110	6.55e-25	93.2
MS.gene040127.t1	MTR_1g071150	35.036	137	89	0	23	159	12	148	1.39e-22	88.2
MS.gene040127.t1	MTR_7g090450	38.298	141	81	3	23	157	73	213	8.31e-22	87.8
MS.gene040127.t1	MTR_8g078270	33.758	157	95	2	1	156	39	187	3.07e-21	85.9
MS.gene040127.t1	MTR_4g112460	32.192	146	96	2	14	156	2	147	3.40e-21	85.1
MS.gene040127.t1	MTR_7g115040	40.741	135	79	1	23	156	12	146	3.50e-21	84.3
MS.gene040127.t1	MTR_7g074020	35.294	136	87	1	23	157	30	165	4.05e-21	85.1
MS.gene040127.t1	MTR_8g069915	34.307	137	87	2	23	156	12	148	5.86e-21	84.3
MS.gene040127.t1	MTR_6g007613	34.307	137	89	1	23	158	29	165	4.76e-20	82.0
MS.gene040127.t1	MTR_3g083470	32.624	141	86	2	23	163	93	224	6.66e-20	83.2
MS.gene040127.t1	MTR_5g027000	33.588	131	86	1	24	153	23	153	1.07e-19	80.9
MS.gene040127.t1	MTR_3g051770	36.986	146	82	3	24	161	389	532	1.94e-18	81.6
MS.gene040127.t1	MTR_7g091890	36.090	133	85	0	24	156	364	496	2.24e-18	81.6
MS.gene040127.t1	MTR_5g092810	34.507	142	92	1	20	161	394	534	4.42e-18	80.5
MS.gene040127.t1	MTR_1g054865	32.847	137	90	1	24	160	467	601	5.59e-18	80.5
MS.gene040127.t1	MTR_8g095440	33.094	139	87	2	24	160	336	470	3.08e-17	78.2
MS.gene040127.t1	MTR_1g041150	33.333	138	88	2	24	160	424	558	4.52e-17	77.8
MS.gene040127.t1	MTR_1g096490	33.813	139	86	2	24	160	336	470	7.48e-17	77.0
MS.gene040127.t1	MTR_4g107490	31.915	141	94	2	18	157	373	512	7.74e-17	77.0
MS.gene040127.t1	MTR_1g026190	31.944	144	93	2	24	165	388	528	1.49e-16	76.3
MS.gene040127.t1	MTR_7g074020	33.333	120	79	1	23	141	30	149	1.53e-16	72.8
MS.gene040127.t1	MTR_7g074020	41.270	63	37	0	94	156	29	91	3.18e-11	58.9
MS.gene040127.t1	MTR_1g052530	34.586	133	87	0	24	156	358	490	1.56e-16	76.3
MS.gene040127.t1	MTR_4g132070	33.577	137	86	2	24	158	397	530	2.99e-16	75.5
MS.gene040127.t1	MTR_5g011850	32.117	137	84	3	24	156	13	144	4.05e-16	71.2
MS.gene040127.t1	MTR_5g009830	34.532	139	86	2	24	160	372	507	4.83e-16	74.7
MS.gene040127.t1	MTR_5g079470	50.746	67	32	1	20	86	7	72	1.28e-15	68.2
MS.gene040127.t1	MTR_1g030440	32.877	146	81	3	22	156	21	160	1.41e-15	70.5
MS.gene040127.t1	MTR_6g007613	32.500	120	80	1	23	141	29	148	1.55e-15	70.1
MS.gene040127.t1	MTR_6g007613	41.270	63	37	0	94	156	28	90	3.02e-11	58.9
MS.gene040127.t1	MTR_7g074240	32.468	154	91	4	24	164	25	178	2.14e-15	70.1
MS.gene040127.t1	MTR_7g106710	34.058	138	87	2	24	160	441	575	2.50e-15	72.8
MS.gene040127.t1	MTR_5g089320	32.394	142	94	2	24	164	374	514	2.80e-15	72.8
MS.gene040127.t1	MTR_1g055255	31.884	138	90	2	24	160	430	564	3.88e-15	72.4
MS.gene040127.t1	MTR_8g099095	33.094	139	88	2	24	160	372	507	1.08e-14	70.9
MS.gene040127.t1	MTR_0028s0170	32.117	137	92	1	24	160	384	519	1.19e-14	70.9
MS.gene040127.t1	MTR_7g068710	29.710	138	97	0	20	157	358	495	1.24e-14	70.9
MS.gene040127.t1	MTR_5g099240	35.036	137	87	1	24	160	330	464	1.52e-14	70.5
MS.gene040127.t1	MTR_5g099240	35.036	137	87	1	24	160	402	536	1.75e-14	70.5
MS.gene040127.t1	MTR_4g066660	31.618	136	92	1	21	156	375	509	4.06e-14	69.3
MS.gene040127.t1	MTR_3g055570	32.836	134	76	1	21	154	50	169	1.53e-13	65.5
MS.gene040127.t1	MTR_3g088655	32.026	153	79	5	23	156	8	154	3.52e-13	63.9
MS.gene040127.t1	MTR_3g055585	29.630	135	81	1	21	155	50	170	1.45e-12	62.8
MS.gene040127.t1	MTR_3g098090	29.496	139	92	2	24	160	338	472	1.46e-12	64.7
MS.gene040127.t1	MTR_3g098070	29.496	139	92	2	24	160	335	469	1.56e-12	64.7
MS.gene040127.t1	MTR_3g055520	29.630	135	81	1	21	155	50	170	1.18e-11	60.1
MS.gene040127.t1	MTR_7g011010	45.455	66	34	1	95	158	134	199	2.51e-11	59.7
MS.gene040127.t1	MTR_4g127560	32.800	125	69	3	46	159	76	196	5.59e-11	58.9
MS.gene040127.t1	MTR_3g055510	25.828	151	85	4	10	154	2	131	7.38e-11	57.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040127.t1	AT1G18210	58.710	155	60	2	2	156	3	153	2.87e-61	187
MS.gene040127.t1	AT1G18210	58.710	155	60	2	2	156	3	153	2.87e-61	187
MS.gene040127.t1	AT1G73630	59.355	155	58	3	4	158	3	152	8.93e-58	178
MS.gene040127.t1	AT5G37770	52.667	150	66	1	18	162	12	161	2.92e-45	146
MS.gene040127.t1	AT5G37770	52.667	150	66	1	18	162	12	161	2.92e-45	146
MS.gene040127.t1	AT1G66400	49.324	148	72	1	18	162	10	157	2.63e-43	141
MS.gene040127.t1	AT1G24620	50.000	138	68	1	20	156	34	171	6.36e-41	136
MS.gene040127.t1	AT2G15680	44.681	141	75	2	21	160	48	186	4.93e-36	124
MS.gene040127.t1	AT4G14640	44.079	152	79	2	8	158	3	149	6.00e-34	117
MS.gene040127.t1	AT5G37780	44.444	135	74	1	23	156	12	146	8.65e-33	114
MS.gene040127.t1	AT5G37780	43.284	67	38	0	90	156	7	73	9.04e-12	60.1
MS.gene040127.t1	AT1G66410	44.444	135	74	1	23	156	12	146	8.65e-33	114
MS.gene040127.t1	AT1G66410	43.284	67	38	0	90	156	7	73	9.04e-12	60.1
MS.gene040127.t1	AT5G21274	45.185	135	73	1	23	156	12	146	1.01e-32	114
MS.gene040127.t1	AT5G21274	43.284	67	38	0	90	156	7	73	7.89e-12	60.1
MS.gene040127.t1	AT3G56800	45.185	135	73	1	23	156	12	146	1.05e-32	114
MS.gene040127.t1	AT3G56800	43.284	67	38	0	90	156	7	73	8.15e-12	60.1
MS.gene040127.t1	AT2G27030	45.185	135	73	1	23	156	12	146	1.05e-32	114
MS.gene040127.t1	AT2G27030	43.284	67	38	0	90	156	7	73	8.15e-12	60.1
MS.gene040127.t1	AT2G41110	45.185	135	73	1	23	156	12	146	1.05e-32	114
MS.gene040127.t1	AT2G41110	43.284	67	38	0	90	156	7	73	8.15e-12	60.1
MS.gene040127.t1	AT3G43810	44.444	135	74	1	23	156	12	146	2.48e-32	113
MS.gene040127.t1	AT3G43810	43.284	67	38	0	90	156	7	73	7.41e-12	60.1
MS.gene040127.t1	AT2G27030	45.185	135	73	1	23	156	12	146	2.72e-32	114
MS.gene040127.t1	AT2G27030	43.284	67	38	0	90	156	7	73	1.83e-11	59.7
MS.gene040127.t1	AT3G43810	43.262	141	79	1	21	160	10	150	8.66e-32	113
MS.gene040127.t1	AT3G43810	43.284	67	38	0	90	156	7	73	2.85e-11	59.7
MS.gene040127.t1	AT1G05990	40.690	145	82	2	20	160	2	146	2.30e-31	110
MS.gene040127.t1	AT5G17470	41.727	139	76	2	27	161	6	143	4.12e-31	110
MS.gene040127.t1	AT3G22930	44.203	138	76	1	23	159	35	172	1.49e-30	109
MS.gene040127.t1	AT3G22930	43.284	67	38	0	95	161	35	101	3.49e-11	58.9
MS.gene040127.t1	AT4G03290	38.462	143	82	2	20	156	2	144	1.51e-30	108
MS.gene040127.t1	AT3G07490	39.726	146	85	2	20	162	2	147	1.20e-29	106
MS.gene040127.t1	AT3G59440	36.025	161	95	2	5	163	39	193	1.53e-29	107
MS.gene040127.t1	AT2G41110	41.497	147	73	2	23	156	12	158	1.68e-29	106
MS.gene040127.t1	AT2G36180	40.972	144	81	2	24	163	1	144	1.05e-28	103
MS.gene040127.t1	AT4G14640	45.528	123	66	1	37	158	9	131	1.05e-28	103
MS.gene040127.t1	AT5G37780	40.000	150	74	2	23	156	12	161	2.07e-28	103
MS.gene040127.t1	AT2G43290	37.662	154	88	3	20	165	62	215	3.11e-28	104
MS.gene040127.t1	AT2G41090	39.161	143	85	1	21	163	10	150	3.35e-28	103
MS.gene040127.t1	AT3G03400	42.308	130	70	3	24	149	6	134	1.97e-27	100
MS.gene040127.t1	AT4G12860	39.041	146	86	2	20	162	2	147	4.14e-27	99.8
MS.gene040127.t1	AT5G37780	43.802	121	67	1	37	156	13	133	5.36e-27	99.0
MS.gene040127.t1	AT1G66410	43.802	121	67	1	37	156	36	156	7.51e-27	99.4
MS.gene040127.t1	AT5G37780	37.267	161	74	2	23	156	12	172	1.19e-26	99.4
MS.gene040127.t1	AT3G10190	38.686	137	82	2	23	157	70	206	2.46e-26	99.4
MS.gene040127.t1	AT1G32250	34.483	145	88	1	21	158	14	158	2.56e-26	98.2
MS.gene040127.t1	AT1G66410	44.545	110	60	1	48	156	1	110	2.56e-25	94.0
MS.gene040127.t1	AT1G66410	44.545	110	60	1	48	156	1	110	2.56e-25	94.0
MS.gene040127.t1	AT3G43810	44.545	110	60	1	48	156	1	110	6.87e-25	93.2
MS.gene040127.t1	AT3G43810	44.545	110	60	1	48	156	1	110	6.87e-25	93.2
MS.gene040127.t1	AT5G42380	38.129	139	84	1	21	157	47	185	9.82e-24	92.0
MS.gene040127.t1	AT3G50770	36.620	142	82	3	22	156	63	203	1.02e-23	92.8
MS.gene040127.t1	AT3G51920	35.036	137	88	1	21	156	10	146	7.02e-23	89.0
MS.gene040127.t1	AT1G18530	33.803	142	81	2	23	156	7	143	3.41e-22	87.4
MS.gene040127.t1	AT3G51850	33.577	137	91	0	20	156	356	492	1.04e-21	91.3
MS.gene040127.t1	AT2G41410	36.232	138	84	3	23	156	70	207	6.23e-21	85.5
MS.gene040127.t1	AT3G50360	34.307	137	89	1	23	158	27	163	1.47e-20	83.6
MS.gene040127.t1	AT2G41100	33.548	155	86	1	23	160	12	166	2.55e-20	85.9
MS.gene040127.t1	AT2G41100	33.784	148	80	1	23	152	101	248	8.87e-20	84.3
MS.gene040127.t1	AT2G41100	33.548	155	86	1	23	160	12	166	2.55e-20	85.9
MS.gene040127.t1	AT2G41100	33.784	148	80	1	23	152	101	248	8.87e-20	84.3
MS.gene040127.t1	AT2G41100	33.784	148	80	1	23	152	66	213	6.37e-20	84.3
MS.gene040127.t1	AT2G41100	31.298	131	73	1	47	160	1	131	1.95e-13	66.6
MS.gene040127.t1	AT2G41100	33.784	148	80	1	23	152	66	213	6.37e-20	84.3
MS.gene040127.t1	AT2G41100	31.298	131	73	1	47	160	1	131	1.95e-13	66.6
MS.gene040127.t1	AT2G41100	33.784	148	80	1	23	152	66	213	6.37e-20	84.3
MS.gene040127.t1	AT2G41100	31.298	131	73	1	47	160	1	131	1.95e-13	66.6
MS.gene040127.t1	AT4G37010	34.074	135	88	1	23	156	27	161	1.16e-19	81.3
MS.gene040127.t1	AT4G37010	34.074	135	88	1	23	156	31	165	1.21e-19	81.3
MS.gene040127.t1	AT2G41860	36.090	133	85	0	24	156	360	492	1.70e-19	84.7
MS.gene040127.t1	AT2G41860	36.090	133	85	0	24	156	360	492	1.98e-19	84.7
MS.gene040127.t1	AT3G57530	36.434	129	81	1	28	156	373	500	5.63e-19	83.2
MS.gene040127.t1	AT3G03000	33.557	149	95	2	14	158	9	157	1.09e-18	78.6
MS.gene040127.t1	AT4G04740	37.037	135	80	2	24	156	374	505	1.59e-18	82.0
MS.gene040127.t1	AT4G04740	37.037	135	80	2	24	156	374	505	1.59e-18	82.0
MS.gene040127.t1	AT4G04740	37.037	135	80	2	24	156	374	505	1.59e-18	82.0
MS.gene040127.t1	AT4G04740	37.037	135	80	2	24	156	374	505	1.59e-18	82.0
MS.gene040127.t1	AT4G04740	37.037	135	80	2	24	156	374	505	1.59e-18	82.0
MS.gene040127.t1	AT4G04740	37.037	135	80	2	24	156	374	505	1.59e-18	82.0
MS.gene040127.t1	AT5G19360	35.766	137	87	1	24	160	374	509	2.49e-18	81.3
MS.gene040127.t1	AT4G21940	37.681	138	79	4	24	158	407	540	2.59e-18	81.3
MS.gene040127.t1	AT4G21940	37.681	138	79	4	24	158	407	540	2.73e-18	81.3
MS.gene040127.t1	AT5G44460	38.776	147	77	4	24	157	29	175	3.49e-18	77.8
MS.gene040127.t1	AT1G61950	32.192	146	98	1	20	165	401	545	3.59e-18	80.9
MS.gene040127.t1	AT4G04720	37.143	140	81	4	24	160	385	520	6.27e-18	80.1
MS.gene040127.t1	AT4G04720	37.143	140	81	4	24	160	385	520	6.27e-18	80.1
MS.gene040127.t1	AT4G14640	40.000	110	60	2	8	116	3	107	6.67e-18	75.5
MS.gene040127.t1	AT4G04695	37.681	138	83	3	24	160	337	472	8.40e-18	79.7
MS.gene040127.t1	AT5G12180	35.036	137	88	1	24	160	379	514	1.10e-17	79.7
MS.gene040127.t1	AT1G76040	35.766	137	83	2	24	158	179	312	2.11e-17	77.8
MS.gene040127.t1	AT1G76040	35.766	137	83	2	24	158	179	312	2.11e-17	77.8
MS.gene040127.t1	AT1G76040	35.766	137	83	2	24	158	417	550	2.99e-17	78.2
MS.gene040127.t1	AT2G17290	36.496	137	85	1	24	160	391	525	3.23e-17	78.2
MS.gene040127.t1	AT2G17290	36.496	137	85	1	24	160	391	525	3.23e-17	78.2
MS.gene040127.t1	AT1G62820	32.847	137	83	4	24	156	14	145	4.70e-17	73.9
MS.gene040127.t1	AT3G25600	30.216	139	94	1	21	156	10	148	5.09e-17	73.9
MS.gene040127.t1	AT1G76650	32.593	135	91	0	23	157	43	177	6.42e-17	74.3
MS.gene040127.t1	AT1G76650	32.593	135	91	0	23	157	43	177	6.42e-17	74.3
MS.gene040127.t1	AT4G20780	35.065	154	79	3	24	156	30	183	6.72e-17	74.3
MS.gene040127.t1	AT1G12310	32.847	137	83	4	24	156	14	145	8.81e-17	73.2
MS.gene040127.t1	AT3G22930	41.053	95	55	1	23	116	35	129	2.17e-16	71.6
MS.gene040127.t1	AT3G22930	43.284	67	38	0	95	161	35	101	9.67e-12	59.7
MS.gene040127.t1	AT4G23650	33.813	139	87	2	24	160	384	519	2.64e-16	75.5
MS.gene040127.t1	AT5G12480	34.328	134	87	1	24	156	271	404	2.88e-16	75.5
MS.gene040127.t1	AT3G51850	31.707	123	84	0	20	142	356	478	3.98e-16	75.1
MS.gene040127.t1	AT5G12480	34.074	135	88	1	24	157	365	499	4.38e-16	75.1
MS.gene040127.t1	AT1G74740	31.387	137	94	0	20	156	361	497	4.84e-16	74.7
MS.gene040127.t1	AT4G09570	33.577	137	89	2	24	160	331	465	5.84e-16	74.7
MS.gene040127.t1	AT4G38230	36.090	133	83	1	24	156	360	490	1.06e-15	73.9
MS.gene040127.t1	AT4G04700	37.226	137	79	4	24	157	337	469	1.28e-15	73.6
MS.gene040127.t1	AT5G19450	33.582	134	88	1	24	156	363	496	1.53e-15	73.6
MS.gene040127.t1	AT5G19450	33.582	134	88	1	24	156	363	496	1.53e-15	73.6
MS.gene040127.t1	AT3G20410	33.566	143	90	2	20	160	393	532	1.58e-15	73.6
MS.gene040127.t1	AT3G20410	33.566	143	90	2	20	160	393	532	1.58e-15	73.6
MS.gene040127.t1	AT1G76640	30.435	138	93	1	23	157	22	159	1.77e-15	70.1
MS.gene040127.t1	AT1G50700	31.469	143	93	2	20	160	375	514	2.11e-15	73.2
MS.gene040127.t1	AT3G03410	31.061	132	83	2	25	156	4	127	3.25e-15	68.6
MS.gene040127.t1	AT5G23580	33.333	135	88	1	24	158	328	460	4.56e-15	72.0
MS.gene040127.t1	AT1G76650	31.852	135	82	1	23	157	43	167	5.92e-15	68.9
MS.gene040127.t1	AT3G10660	32.090	134	87	2	24	156	492	622	6.63e-15	71.6
MS.gene040127.t1	AT3G10660	32.090	134	87	2	24	156	492	622	6.63e-15	71.6
MS.gene040127.t1	AT1G18890	29.927	137	96	0	20	156	365	501	1.06e-14	70.9
MS.gene040127.t1	AT4G35310	34.307	137	88	1	24	160	403	537	1.98e-14	70.1
MS.gene040127.t1	AT4G35310	34.307	137	88	1	24	160	403	537	1.98e-14	70.1
MS.gene040127.t1	AT4G38230	35.556	135	85	1	24	158	186	318	3.70e-14	68.9
MS.gene040127.t1	AT4G38230	35.294	136	86	1	24	159	330	463	5.09e-14	68.9
MS.gene040127.t1	AT4G38230	35.294	136	86	1	24	159	330	463	5.09e-14	68.9
MS.gene040127.t1	AT2G31500	31.111	135	90	2	27	158	375	509	7.39e-14	68.6
MS.gene040127.t1	AT1G35670	32.847	137	90	2	24	160	332	466	9.86e-14	68.2
MS.gene040127.t1	AT1G21550	35.417	144	82	4	23	156	10	152	1.13e-13	65.1
MS.gene040127.t1	AT2G41100	32.231	121	64	1	50	152	3	123	5.68e-13	64.3
MS.gene040127.t1	AT3G03430	46.667	60	31	1	27	86	13	71	6.33e-13	61.2
MS.gene040127.t1	AT5G04870	30.435	138	92	2	24	160	456	590	9.89e-13	65.5
MS.gene040127.t1	AT5G17480	50.000	58	28	1	27	84	13	69	1.08e-12	60.8
MS.gene040127.t1	AT3G01830	30.000	140	91	3	22	157	10	146	1.40e-12	62.0
MS.gene040127.t1	AT4G04710	31.111	135	92	1	24	158	351	484	1.57e-12	64.7
MS.gene040127.t1	AT1G50700	27.219	169	92	4	20	160	375	540	1.77e-12	64.7
MS.gene040127.t1	AT2G38910	29.927	137	90	2	24	158	440	572	1.31e-11	62.0
MS.gene040127.t1	AT4G04710	31.111	135	92	1	24	158	338	471	2.88e-11	61.2
MS.gene040127.t1	AT4G04710	31.111	135	92	1	24	158	324	457	3.06e-11	60.8
MS.gene040127.t1	AT4G04710	30.657	137	92	2	24	158	351	486	4.18e-11	60.5
MS.gene040127.t1	AT3G29000	40.580	69	39	1	90	156	121	189	4.74e-11	58.9
MS.gene040127.t1	AT4G04740	33.884	121	75	2	24	142	374	491	5.99e-11	60.1

Find 55 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGAAAATGCCTAATTGCTAT+TGG	0.334630	4.4:-406050	None:intergenic
GTGGTGGTAGTTTCAGTGTT+TGG	0.361160	4.4:-405578	None:intergenic
ACACGCTGAAGCTCGTCCTT+AGG	0.380697	4.4:-405731	None:intergenic
TAATCAAGCCAATAGCAATT+AGG	0.386571	4.4:+406042	MS.gene040127:CDS
ACCAAGGTAAACAGAGGATT+TGG	0.387128	4.4:-405600	None:intergenic
AGCATCACCGTCGGCGGAGC+CGG	0.433833	4.4:-405822	None:intergenic
CACGCTGAAGCTCGTCCTTA+GGG	0.450425	4.4:-405730	None:intergenic
GACAACATCCTCCGCTCCCT+CGG	0.457675	4.4:+405698	MS.gene040127:CDS
GGTGTCAAAGCGGGTGAAAA+CGG	0.465827	4.4:-405642	None:intergenic
TGTCGCTCCGGCTCCGCCGA+CGG	0.474738	4.4:+405815	MS.gene040127:CDS
CTCTGTTTACCTTGGTGACA+TGG	0.477447	4.4:+405607	MS.gene040127:CDS
ATCTGCAACAGAACTCTGTC+AGG	0.479021	4.4:+405898	MS.gene040127:CDS
GGAGATCTTGCCGTCGCCGT+TGG	0.484522	4.4:-405663	None:intergenic
GGTAGTTTCAGTGTTTGGAT+TGG	0.496656	4.4:-405573	None:intergenic
CGCTTTGACACCAACGGCGA+CGG	0.502369	4.4:+405653	MS.gene040127:CDS
CTGTGGATCCGAGGGAGCGG+AGG	0.507387	4.4:-405706	None:intergenic
AGAGTTCTGTTGCAGATATG+AGG	0.511848	4.4:-405892	None:intergenic
GTCGCCGTTGGTGTCAAAGC+GGG	0.513809	4.4:-405651	None:intergenic
GTCCTTGTCGTACAGATCAA+AGG	0.524229	4.4:-405861	None:intergenic
GGACTGTGGATCCGAGGGAG+CGG	0.526161	4.4:-405709	None:intergenic
CATGTTGTGGCATTCTTCAA+CGG	0.531855	4.4:-405948	None:intergenic
GGAGCCGGAGCGACAGAAGG+CGG	0.535146	4.4:-405807	None:intergenic
ACCAAATCCTCTGTTTACCT+TGG	0.535920	4.4:+405599	MS.gene040127:CDS
CCTCGGATCCACAGTCCCTA+AGG	0.538554	4.4:+405715	MS.gene040127:CDS
GGCGGAGCCGGAGCGACAGA+AGG	0.541568	4.4:-405810	None:intergenic
CAACGGATTTAATCATGTTG+TGG	0.548092	4.4:-405961	None:intergenic
AACCGTCGTGGTCGGTGTCA+AGG	0.551083	4.4:-405763	None:intergenic
CAAGATCTCCGTCACCGAGT+TGG	0.554785	4.4:+405676	MS.gene040127:CDS
CCTTAGGGACTGTGGATCCG+AGG	0.560391	4.4:-405715	None:intergenic
TTCACCCGCTTTGACACCAA+CGG	0.562749	4.4:+405647	MS.gene040127:CDS
TGTCAGGTGCTGAACACCCT+CGG	0.567392	4.4:+405914	MS.gene040127:CDS
GGACGAGCTTCAGCGTGTCA+TGG	0.570764	4.4:+405736	MS.gene040127:CDS
AACGGAGCACTTCATTCCGA+GGG	0.578467	4.4:-405930	None:intergenic
AAGGTAAACAGAGGATTTGG+TGG	0.587552	4.4:-405597	None:intergenic
ATTAAATCCGTTGATTCTGA+TGG	0.588476	4.4:+405971	MS.gene040127:CDS
CAACGGAGCACTTCATTCCG+AGG	0.588624	4.4:-405931	None:intergenic
GTTGATGAAACCGTCGTGGT+CGG	0.589277	4.4:-405771	None:intergenic
CTCTGAAGCATCACCGTCGG+CGG	0.589333	4.4:-405828	None:intergenic
CTTAGGGACTGTGGATCCGA+GGG	0.600721	4.4:-405714	None:intergenic
GCGGAGGATGTTGTCCAACT+CGG	0.603566	4.4:-405690	None:intergenic
TCCGTTGATTCTGATGGTGA+CGG	0.606109	4.4:+405977	MS.gene040127:CDS
GTAAACAGAGGATTTGGTGG+TGG	0.607876	4.4:-405594	None:intergenic
GATGTTGTCCAACTCGGTGA+CGG	0.608041	4.4:-405684	None:intergenic
TTTGCCGCCTTCTGTCGCTC+CGG	0.609226	4.4:+405803	MS.gene040127:CDS
ACCGTCACCATCAGAATCAA+CGG	0.621270	4.4:-405978	None:intergenic
CTGTACGACAAGGACAAGAA+CGG	0.624259	4.4:+405869	MS.gene040127:CDS
AAGCTCGTCCTTAGGGACTG+TGG	0.630754	4.4:-405723	None:intergenic
AAGCTCTGAAGCATCACCGT+CGG	0.642996	4.4:-405831	None:intergenic
TCAATTCGTCCATGTCACCA+AGG	0.657883	4.4:-405616	None:intergenic
CGTCGCCGTTGGTGTCAAAG+CGG	0.673460	4.4:-405652	None:intergenic
AGCCTTTGATCTGTACGACA+AGG	0.692386	4.4:+405859	MS.gene040127:CDS
CATGTCACCAAGGTAAACAG+AGG	0.695210	4.4:-405606	None:intergenic
AGAAGGCGGCAAACTCAGCG+AGG	0.704192	4.4:-405793	None:intergenic
GACCTTGACACCGACCACGA+CGG	0.706107	4.4:+405761	MS.gene040127:CDS
CGAGGTTGATGAAACCGTCG+TGG	0.708586	4.4:-405775	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTAAATCCGTTGATTCTGA+TGG	+	chr4.4:405971-405990	MS.gene040127:CDS	30.0%
!	CAACGGATTTAATCATGTTG+TGG	-	chr4.4:405964-405983	None:intergenic	35.0%
	AAGGTAAACAGAGGATTTGG+TGG	-	chr4.4:405600-405619	None:intergenic	40.0%
	ACCAAATCCTCTGTTTACCT+TGG	+	chr4.4:405599-405618	MS.gene040127:CDS	40.0%
	ACCAAGGTAAACAGAGGATT+TGG	-	chr4.4:405603-405622	None:intergenic	40.0%
	AGAGTTCTGTTGCAGATATG+AGG	-	chr4.4:405895-405914	None:intergenic	40.0%
	CATGTTGTGGCATTCTTCAA+CGG	-	chr4.4:405951-405970	None:intergenic	40.0%
	GGTAGTTTCAGTGTTTGGAT+TGG	-	chr4.4:405576-405595	None:intergenic	40.0%
	ACCGTCACCATCAGAATCAA+CGG	-	chr4.4:405981-406000	None:intergenic	45.0%
	AGCCTTTGATCTGTACGACA+AGG	+	chr4.4:405859-405878	MS.gene040127:CDS	45.0%
	ATCTGCAACAGAACTCTGTC+AGG	+	chr4.4:405898-405917	MS.gene040127:CDS	45.0%
	CATGTCACCAAGGTAAACAG+AGG	-	chr4.4:405609-405628	None:intergenic	45.0%
	CTGTACGACAAGGACAAGAA+CGG	+	chr4.4:405869-405888	MS.gene040127:CDS	45.0%
	GTCCTTGTCGTACAGATCAA+AGG	-	chr4.4:405864-405883	None:intergenic	45.0%
	GTGGTGGTAGTTTCAGTGTT+TGG	-	chr4.4:405581-405600	None:intergenic	45.0%
	TCAATTCGTCCATGTCACCA+AGG	-	chr4.4:405619-405638	None:intergenic	45.0%
!	CTCTGTTTACCTTGGTGACA+TGG	+	chr4.4:405607-405626	MS.gene040127:CDS	45.0%
!!	GTAAACAGAGGATTTGGTGG+TGG	-	chr4.4:405597-405616	None:intergenic	45.0%
!!	TCCGTTGATTCTGATGGTGA+CGG	+	chr4.4:405977-405996	MS.gene040127:CDS	45.0%
	GGTGTCAAAGCGGGTGAAAA+CGG	-	chr4.4:405645-405664	None:intergenic	50.0%
	TTCACCCGCTTTGACACCAA+CGG	+	chr4.4:405647-405666	MS.gene040127:CDS	50.0%
!	AACGGAGCACTTCATTCCGA+GGG	-	chr4.4:405933-405952	None:intergenic	50.0%
!	GATGTTGTCCAACTCGGTGA+CGG	-	chr4.4:405687-405706	None:intergenic	50.0%
!	GTTGATGAAACCGTCGTGGT+CGG	-	chr4.4:405774-405793	None:intergenic	50.0%
!!	AAGCTCTGAAGCATCACCGT+CGG	-	chr4.4:405834-405853	None:intergenic	50.0%
	AAGCTCGTCCTTAGGGACTG+TGG	-	chr4.4:405726-405745	None:intergenic	55.0%
	ACACGCTGAAGCTCGTCCTT+AGG	-	chr4.4:405734-405753	None:intergenic	55.0%
	CAAGATCTCCGTCACCGAGT+TGG	+	chr4.4:405676-405695	MS.gene040127:CDS	55.0%
	CACGCTGAAGCTCGTCCTTA+GGG	-	chr4.4:405733-405752	None:intergenic	55.0%
	CTTAGGGACTGTGGATCCGA+GGG	-	chr4.4:405717-405736	None:intergenic	55.0%
	GCGGAGGATGTTGTCCAACT+CGG	-	chr4.4:405693-405712	None:intergenic	55.0%
!	CAACGGAGCACTTCATTCCG+AGG	-	chr4.4:405934-405953	None:intergenic	55.0%
!!	CGAGGTTGATGAAACCGTCG+TGG	-	chr4.4:405778-405797	None:intergenic	55.0%
!!	TGTCAGGTGCTGAACACCCT+CGG	+	chr4.4:405914-405933	MS.gene040127:CDS	55.0%
	AGAAGGCGGCAAACTCAGCG+AGG	-	chr4.4:405796-405815	None:intergenic	60.0%
	CCTCGGATCCACAGTCCCTA+AGG	+	chr4.4:405715-405734	MS.gene040127:CDS	60.0%
	CCTTAGGGACTGTGGATCCG+AGG	-	chr4.4:405718-405737	None:intergenic	60.0%
	CGCTTTGACACCAACGGCGA+CGG	+	chr4.4:405653-405672	MS.gene040127:CDS	60.0%
	GACAACATCCTCCGCTCCCT+CGG	+	chr4.4:405698-405717	MS.gene040127:CDS	60.0%
	GACCTTGACACCGACCACGA+CGG	+	chr4.4:405761-405780	MS.gene040127:CDS	60.0%
	GGACGAGCTTCAGCGTGTCA+TGG	+	chr4.4:405736-405755	MS.gene040127:CDS	60.0%
	TTTGCCGCCTTCTGTCGCTC+CGG	+	chr4.4:405803-405822	MS.gene040127:CDS	60.0%
!!	AACCGTCGTGGTCGGTGTCA+AGG	-	chr4.4:405766-405785	None:intergenic	60.0%
!!	CGTCGCCGTTGGTGTCAAAG+CGG	-	chr4.4:405655-405674	None:intergenic	60.0%
!!	CTCTGAAGCATCACCGTCGG+CGG	-	chr4.4:405831-405850	None:intergenic	60.0%
!!	GTCGCCGTTGGTGTCAAAGC+GGG	-	chr4.4:405654-405673	None:intergenic	60.0%
	GGACTGTGGATCCGAGGGAG+CGG	-	chr4.4:405712-405731	None:intergenic	65.0%
	GGAGATCTTGCCGTCGCCGT+TGG	-	chr4.4:405666-405685	None:intergenic	65.0%
	AGCATCACCGTCGGCGGAGC+CGG	-	chr4.4:405825-405844	None:intergenic	70.0%
	CTGTGGATCCGAGGGAGCGG+AGG	-	chr4.4:405709-405728	None:intergenic	70.0%
	GGAGCCGGAGCGACAGAAGG+CGG	-	chr4.4:405810-405829	None:intergenic	70.0%
	GGCGGAGCCGGAGCGACAGA+AGG	-	chr4.4:405813-405832	None:intergenic	75.0%
	TGTCGCTCCGGCTCCGCCGA+CGG	+	chr4.4:405815-405834	MS.gene040127:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	405566	406063	405566	ID=MS.gene040127
chr4.4	mRNA	405566	406063	405566	ID=MS.gene040127.t1;Parent=MS.gene040127
chr4.4	exon	405566	406063	405566	ID=MS.gene040127.t1.exon1;Parent=MS.gene040127.t1
chr4.4	CDS	405566	406063	405566	ID=cds.MS.gene040127.t1;Parent=MS.gene040127.t1

Gene Sequence

>MS.gene040127

ATGGCAACCAATCCAAACACTGAAACTACCACCACCAAATCCTCTGTTTACCTTGGTGACATGGACGAATTGAAAACCGTTTTCACCCGCTTTGACACCAACGGCGACGGCAAGATCTCCGTCACCGAGTTGGACAACATCCTCCGCTCCCTCGGATCCACAGTCCCTAAGGACGAGCTTCAGCGTGTCATGGAAGACCTTGACACCGACCACGACGGTTTCATCAACCTCGCTGAGTTTGCCGCCTTCTGTCGCTCCGGCTCCGCCGACGGTGATGCTTCAGAGCTTCGCGAAGCCTTTGATCTGTACGACAAGGACAAGAACGGCCTCATATCTGCAACAGAACTCTGTCAGGTGCTGAACACCCTCGGAATGAAGTGCTCCGTTGAAGAATGCCACAACATGATTAAATCCGTTGATTCTGATGGTGACGGTAACGTTAACTTTGAAGAGTTTAAGAAGATGATGAACAATAATAATCAAGCCAATAGCAATTAG

Protein sequence

>MS.gene040127.t1

MATNPNTETTTTKSSVYLGDMDELKTVFTRFDTNGDGKISVTELDNILRSLGSTVPKDELQRVMEDLDTDHDGFINLAEFAAFCRSGSADGDASELREAFDLYDKDKNGLISATELCQVLNTLGMKCSVEECHNMIKSVDSDGDGNVNFEEFKKMMNNNNQANSN