AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92789

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92789.t1 MTR_7g074240 98.315 178 3 0 1 178 1 178 3.90e-128 357
MS.gene92789.t1 MTR_4g067270 40.523 153 81 2 25 177 6 148 1.23e-31 111
MS.gene92789.t1 MTR_4g115170 36.601 153 91 1 25 171 65 217 1.64e-24 95.5
MS.gene92789.t1 MTR_1g046950 37.671 146 81 2 25 170 5 140 1.33e-22 88.6
MS.gene92789.t1 MTR_3g088655 34.568 162 94 4 20 175 4 159 3.80e-22 87.8
MS.gene92789.t1 MTR_7g089760 35.948 153 88 1 25 177 6 148 3.83e-22 87.4
MS.gene92789.t1 MTR_3g067610 36.301 146 77 2 25 170 6 135 8.72e-22 86.3
MS.gene92789.t1 MTR_2g098890 35.088 171 98 2 6 171 41 203 9.92e-22 87.8
MS.gene92789.t1 MTR_1g030440 33.758 157 96 2 20 176 18 166 3.91e-21 85.5
MS.gene92789.t1 MTR_1g047100 37.162 148 82 3 25 172 5 141 4.70e-21 84.3
MS.gene92789.t1 MTR_7g075040 37.255 153 89 4 22 172 45 192 2.91e-20 83.6
MS.gene92789.t1 MTR_1g041285 37.333 150 82 2 23 172 11 148 4.03e-20 82.4
MS.gene92789.t1 MTR_1g076650 37.162 148 81 2 25 172 13 148 6.32e-20 81.6
MS.gene92789.t1 MTR_8g036075 38.462 156 88 4 18 171 43 192 1.77e-19 81.6
MS.gene92789.t1 MTR_5g079340 36.301 146 80 3 25 170 5 137 2.37e-19 80.1
MS.gene92789.t1 MTR_1g032070 34.483 174 92 4 7 170 19 180 1.00e-17 77.0
MS.gene92789.t1 MTR_4g103630 32.667 150 88 2 21 170 3 139 3.03e-17 74.3
MS.gene92789.t1 MTR_8g105230 32.026 153 92 3 15 167 27 167 3.22e-17 75.5
MS.gene92789.t1 MTR_6g023460 32.639 144 84 2 27 170 11 141 1.48e-16 72.8
MS.gene92789.t1 MTR_4g086260 32.192 146 85 2 25 170 58 189 1.49e-16 73.9
MS.gene92789.t1 MTR_4g127560 54.545 66 30 0 106 171 129 194 2.71e-16 73.6
MS.gene92789.t1 MTR_3g109320 54.930 71 32 0 100 170 108 178 3.37e-16 72.8
MS.gene92789.t1 MTR_5g088320 32.192 146 87 2 25 170 13 146 6.96e-16 71.2
MS.gene92789.t1 MTR_6g025320 32.192 146 87 2 25 170 13 146 7.11e-16 71.2
MS.gene92789.t1 MTR_4g103650 32.432 148 87 2 23 170 1 135 1.10e-15 70.5
MS.gene92789.t1 MTR_4g103655 33.333 144 83 2 27 170 9 139 1.37e-15 70.1
MS.gene92789.t1 MTR_7g087610 32.192 146 87 2 25 170 13 146 1.90e-15 70.1
MS.gene92789.t1 MTR_5g008705 33.571 140 81 3 31 170 1 128 2.35e-15 69.3
MS.gene92789.t1 MTR_3g089090 32.857 140 81 2 32 171 13 139 2.63e-15 69.3
MS.gene92789.t1 MTR_3g089070 32.857 140 81 2 32 171 14 140 2.66e-15 69.3
MS.gene92789.t1 MTR_5g025690 53.846 65 30 0 106 170 131 195 4.37e-15 70.1
MS.gene92789.t1 MTR_8g107110 31.818 154 92 3 25 178 25 165 8.84e-15 68.6
MS.gene92789.t1 MTR_6g079570 31.646 158 92 4 25 178 27 172 1.22e-14 68.6
MS.gene92789.t1 MTR_7g011010 49.231 65 33 0 106 170 133 197 4.80e-14 67.4
MS.gene92789.t1 MTR_1g071150 34.507 142 80 2 29 170 17 145 7.34e-14 65.9
MS.gene92789.t1 MTR_7g074020 30.000 150 91 4 25 173 31 167 8.95e-14 66.2
MS.gene92789.t1 MTR_8g066630 29.221 154 100 3 25 178 18 162 3.10e-13 64.7
MS.gene92789.t1 MTR_5g017510 29.885 174 87 6 12 170 29 182 3.66e-13 64.7
MS.gene92789.t1 MTR_5g017560 29.885 174 87 6 12 170 29 182 3.66e-13 64.7
MS.gene92789.t1 MTR_1g096490 31.973 147 85 2 25 171 336 467 7.50e-13 65.9
MS.gene92789.t1 MTR_7g090450 32.192 146 92 2 25 170 74 212 1.21e-12 63.9
MS.gene92789.t1 MTR_1g026190 28.947 152 92 3 25 175 388 524 1.36e-12 65.5
MS.gene92789.t1 MTR_4g107490 32.450 151 87 4 25 174 379 515 1.55e-12 65.1
MS.gene92789.t1 MTR_3g098090 29.252 147 89 3 25 171 338 469 2.67e-12 64.3
MS.gene92789.t1 MTR_6g007613 26.705 176 109 5 6 174 5 167 2.80e-12 62.0
MS.gene92789.t1 MTR_8g099095 30.405 148 87 3 25 171 372 504 3.24e-12 64.3
MS.gene92789.t1 MTR_3g051770 28.105 153 93 3 25 172 389 529 3.44e-12 64.3
MS.gene92789.t1 MTR_0028s0170 27.211 147 93 2 25 171 384 516 3.81e-12 63.9
MS.gene92789.t1 MTR_1g054865 30.000 150 88 3 25 173 467 600 4.08e-12 63.9
MS.gene92789.t1 MTR_4g132070 27.703 148 93 2 25 172 397 530 4.49e-12 63.9
MS.gene92789.t1 MTR_3g098070 27.891 147 91 2 25 171 335 466 9.98e-12 62.8
MS.gene92789.t1 MTR_5g092810 27.027 148 94 2 25 172 398 531 1.07e-11 62.8
MS.gene92789.t1 MTR_4g112460 31.544 149 88 4 24 170 11 147 1.41e-11 60.1
MS.gene92789.t1 MTR_3g110008 49.296 71 36 0 100 170 108 178 1.50e-11 60.5
MS.gene92789.t1 MTR_5g089320 26.712 146 93 2 25 170 374 505 1.51e-11 62.4
MS.gene92789.t1 MTR_5g017550 29.444 180 95 7 7 170 18 181 2.17e-11 60.1
MS.gene92789.t1 MTR_5g009830 29.730 148 88 3 25 171 372 504 2.36e-11 61.6
MS.gene92789.t1 MTR_1g055255 30.405 148 84 3 25 170 430 560 2.84e-11 61.6
MS.gene92789.t1 MTR_3g083470 42.466 73 38 2 98 170 149 217 5.41e-11 59.7
MS.gene92789.t1 MTR_1g041150 27.703 148 90 3 25 171 424 555 5.63e-11 60.5
MS.gene92789.t1 MTR_4g132040 25.000 148 97 2 25 172 401 534 7.24e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92789.t1 AT4G20780 59.887 177 63 3 10 178 15 191 4.41e-69 208
MS.gene92789.t1 AT5G44460 57.558 172 73 0 6 177 10 181 5.28e-66 200
MS.gene92789.t1 AT2G43290 39.506 162 93 1 17 178 58 214 7.90e-34 119
MS.gene92789.t1 AT1G05990 36.842 152 87 1 20 171 1 143 3.37e-27 100
MS.gene92789.t1 AT3G59440 36.025 161 92 1 17 177 44 193 8.45e-27 100
MS.gene92789.t1 AT4G03290 36.478 159 94 1 20 178 1 152 8.35e-26 97.1
MS.gene92789.t1 AT3G07490 36.184 152 87 1 20 171 1 142 2.42e-23 90.9
MS.gene92789.t1 AT1G66400 36.301 146 83 2 25 170 16 151 2.93e-22 88.2
MS.gene92789.t1 AT4G12860 36.054 147 84 1 25 171 6 142 2.56e-21 85.5
MS.gene92789.t1 AT5G37770 36.486 148 82 3 25 170 18 155 3.70e-21 85.1
MS.gene92789.t1 AT5G37770 36.486 148 82 3 25 170 18 155 3.70e-21 85.1
MS.gene92789.t1 AT3G22930 34.459 148 85 2 23 170 34 169 2.79e-17 75.5
MS.gene92789.t1 AT1G24620 34.395 157 91 2 14 170 27 171 5.68e-17 75.1
MS.gene92789.t1 AT4G14640 34.694 147 84 2 24 170 13 147 1.15e-16 73.2
MS.gene92789.t1 AT1G18530 31.818 154 91 3 24 175 7 148 1.76e-16 72.8
MS.gene92789.t1 AT5G37780 32.192 146 87 2 25 170 13 146 2.01e-16 72.8
MS.gene92789.t1 AT1G66410 32.192 146 87 2 25 170 13 146 2.01e-16 72.8
MS.gene92789.t1 AT1G21550 36.842 152 80 4 25 170 11 152 3.22e-16 72.4
MS.gene92789.t1 AT5G42380 32.237 152 92 2 20 171 45 185 4.22e-16 72.8
MS.gene92789.t1 AT3G43810 31.788 151 91 2 25 175 13 151 5.77e-16 72.8
MS.gene92789.t1 AT2G27030 32.192 146 87 2 25 170 13 146 6.74e-16 72.0
MS.gene92789.t1 AT1G73630 29.070 172 102 4 1 172 1 152 6.76e-16 71.6
MS.gene92789.t1 AT3G43810 32.192 146 87 2 25 170 13 146 7.45e-16 71.2
MS.gene92789.t1 AT3G56800 32.192 146 87 2 25 170 13 146 8.73e-16 70.9
MS.gene92789.t1 AT2G27030 32.192 146 87 2 25 170 13 146 8.73e-16 70.9
MS.gene92789.t1 AT2G41110 32.192 146 87 2 25 170 13 146 8.73e-16 70.9
MS.gene92789.t1 AT5G21274 32.192 146 87 2 25 170 13 146 1.26e-15 70.5
MS.gene92789.t1 AT1G18210 31.210 157 78 4 21 170 20 153 3.26e-15 70.1
MS.gene92789.t1 AT1G18210 31.210 157 78 4 21 170 20 153 3.26e-15 70.1
MS.gene92789.t1 AT5G17470 30.667 150 94 2 23 172 1 140 4.43e-15 68.9
MS.gene92789.t1 AT3G29000 43.269 104 51 3 73 173 94 192 4.53e-15 70.1
MS.gene92789.t1 AT3G51920 29.577 142 88 2 29 170 17 146 7.22e-15 68.6
MS.gene92789.t1 AT4G37010 28.824 170 105 5 6 174 11 165 9.34e-15 68.6
MS.gene92789.t1 AT4G37010 28.824 170 105 5 6 174 15 169 1.26e-14 68.6
MS.gene92789.t1 AT2G15680 30.464 151 91 2 25 175 51 187 1.63e-14 68.6
MS.gene92789.t1 AT1G32250 30.986 142 92 3 25 166 17 152 2.16e-14 67.8
MS.gene92789.t1 AT2G38910 30.201 149 89 3 25 173 440 573 1.25e-13 68.6
MS.gene92789.t1 AT1G35670 31.293 147 86 2 25 171 332 463 1.94e-13 67.8
MS.gene92789.t1 AT2G41110 30.380 158 86 3 25 170 13 158 3.04e-13 64.7
MS.gene92789.t1 AT5G19360 29.252 147 90 2 25 171 374 506 4.07e-13 67.0
MS.gene92789.t1 AT5G37780 29.193 161 87 3 25 170 13 161 4.26e-13 64.3
MS.gene92789.t1 AT2G36180 31.373 153 94 3 25 176 1 143 4.63e-13 63.5
MS.gene92789.t1 AT5G12180 29.252 147 90 2 25 171 379 511 8.70e-13 65.9
MS.gene92789.t1 AT4G09570 30.612 147 87 2 25 171 331 462 1.21e-12 65.5
MS.gene92789.t1 AT5G39670 45.070 71 39 0 100 170 129 199 1.52e-12 63.5
MS.gene92789.t1 AT4G04695 27.333 150 91 4 25 172 337 470 1.74e-12 65.1
MS.gene92789.t1 AT2G31500 33.140 172 92 6 11 174 355 511 1.79e-12 65.1
MS.gene92789.t1 AT1G50700 31.544 149 86 4 25 172 379 512 1.95e-12 65.1
MS.gene92789.t1 AT3G50360 26.190 168 108 4 8 174 13 165 2.74e-12 62.0
MS.gene92789.t1 AT3G20410 30.405 148 89 3 25 172 397 530 4.04e-12 63.9
MS.gene92789.t1 AT3G20410 30.405 148 89 3 25 172 397 530 4.04e-12 63.9
MS.gene92789.t1 AT3G51850 29.333 150 93 2 25 174 360 496 4.33e-12 63.9
MS.gene92789.t1 AT4G04710 27.211 147 93 2 25 171 338 470 6.44e-12 63.5
MS.gene92789.t1 AT4G04710 27.211 147 93 2 25 171 351 483 7.08e-12 63.2
MS.gene92789.t1 AT4G04710 27.211 147 93 2 25 171 324 456 7.73e-12 63.2
MS.gene92789.t1 AT4G04700 28.105 153 90 4 25 174 337 472 8.75e-12 63.2
MS.gene92789.t1 AT5G04870 28.758 153 92 4 25 176 456 592 1.81e-11 62.0
MS.gene92789.t1 AT4G14640 34.351 131 74 2 40 170 11 129 2.95e-11 58.5
MS.gene92789.t1 AT5G37780 31.298 131 78 2 40 170 15 133 3.41e-11 58.5
MS.gene92789.t1 AT3G22930 33.019 106 61 1 23 128 34 129 4.57e-11 58.2
MS.gene92789.t1 AT1G66410 31.298 131 78 2 40 170 38 156 4.91e-11 58.5
MS.gene92789.t1 AT5G37780 27.326 172 87 3 25 170 13 172 5.02e-11 58.9
MS.gene92789.t1 AT1G50700 30.909 165 92 6 25 172 379 538 5.19e-11 60.8
MS.gene92789.t1 AT1G76640 30.612 147 92 3 25 171 23 159 6.49e-11 58.2
MS.gene92789.t1 AT4G04720 29.333 150 88 3 25 172 385 518 7.05e-11 60.5
MS.gene92789.t1 AT4G04720 29.333 150 88 3 25 172 385 518 7.05e-11 60.5
MS.gene92789.t1 AT5G23580 27.891 147 91 2 25 171 328 459 8.27e-11 60.1
MS.gene92789.t1 AT2G41100 29.730 148 95 2 26 166 68 213 9.89e-11 59.3
MS.gene92789.t1 AT2G41100 29.730 148 95 2 26 166 68 213 9.89e-11 59.3
MS.gene92789.t1 AT2G41100 29.730 148 95 2 26 166 68 213 9.89e-11 59.3

Find 39 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACACAAAATGAAGATCTA+TGG 0.299563 7.4:+30807674 MS.gene92789:CDS
AAGGAATTGCAAGTTGTGTT+AGG 0.304824 7.4:+30807745 MS.gene92789:CDS
ACGACTTTGATGGCGATGAT+AGG 0.357282 7.4:-30806700 None:intergenic
CGAAGCCGAAACGACTTTGA+TGG 0.412298 7.4:-30806710 None:intergenic
CAAGTTGTGTTAGGGAAGCT+TGG 0.430185 7.4:+30807754 MS.gene92789:CDS
TACGTTAGTCCTACGTTGCC+CGG 0.436515 7.4:-30807580 None:intergenic
CATCGCCATCAAAGTCGTTT+CGG 0.444047 7.4:+30806705 MS.gene92789:CDS
ATCCCAACAGGTTGAGAGCC+TGG 0.454338 7.4:-30806823 None:intergenic
GTGGGATTGCACGAGTCACT+TGG 0.455617 7.4:+30807613 MS.gene92789:CDS
AGATCTATGGGAAGCATTCA+AGG 0.473196 7.4:+30807687 MS.gene92789:CDS
TGGGATTGCACGAGTCACTT+GGG 0.477663 7.4:+30807614 MS.gene92789:CDS
AGGAATTGCAAGTTGTGTTA+GGG 0.482752 7.4:+30807746 MS.gene92789:CDS
ACTCAGCTTCTAATCCCAAC+AGG 0.488098 7.4:-30806835 None:intergenic
AGCCAGGCTCTCAACCTGTT+GGG 0.492879 7.4:+30806821 MS.gene92789:CDS
TGAACTAACTCACTTGATCA+TGG 0.502232 7.4:-30806873 None:intergenic
AACACAAAATGAAGATCTAT+GGG 0.513461 7.4:+30807675 MS.gene92789:CDS
AAGCCAGGCTCTCAACCTGT+TGG 0.523083 7.4:+30806820 MS.gene92789:CDS
TTCAAGGTGTTTGATGAAGA+TGG 0.525519 7.4:+30807703 MS.gene92789:CDS
GGGAAGCTTGGACTTGTGGA+AGG 0.530012 7.4:+30807766 MS.gene92789:CDS
TGGCAGGTCATACATAAAGC+CGG 0.534241 7.4:+30807561 MS.gene92789:intron
AACTGTGGAGGAAATAAGCC+AGG 0.538862 7.4:+30806805 MS.gene92789:CDS
GGCAGGTCATACATAAAGCC+GGG 0.555773 7.4:+30807562 MS.gene92789:intron
GTTAGGGAAGCTTGGACTTG+TGG 0.573473 7.4:+30807762 MS.gene92789:CDS
TGTCAAATATTCGTCGCAGA+CGG 0.580366 7.4:-30806754 None:intergenic
GAAAATCAACACGACCATCA+TGG 0.580986 7.4:-30807837 None:intergenic
ACTAACGTATGAAGATTTCG+TGG 0.591570 7.4:+30807594 MS.gene92789:CDS
ATCAACACGACCATCATGGT+TGG 0.596881 7.4:-30807833 None:intergenic
TACATAAAGCCGGGCAACGT+AGG 0.604345 7.4:+30807571 MS.gene92789:CDS
GGAAGCTTGGACTTGTGGAA+GGG 0.609692 7.4:+30807767 MS.gene92789:CDS
TGATGGTTACATATCAGCTA+AGG 0.610274 7.4:+30807726 MS.gene92789:CDS
TCTGTTGATACCAACCATGA+TGG 0.617665 7.4:+30807823 MS.gene92789:CDS
CTAACGTATGAAGATTTCGT+GGG 0.618462 7.4:+30807595 MS.gene92789:CDS
GGGATTGCACGAGTCACTTG+GGG 0.634228 7.4:+30807615 MS.gene92789:CDS
GTGTTTGATGAAGATGGTGA+TGG 0.643172 7.4:+30807709 MS.gene92789:CDS
ATTAGAAGCTGAGTTCAAAG+AGG 0.645740 7.4:+30806844 MS.gene92789:CDS
TGGAGATTCAATGATAACTG+TGG 0.653033 7.4:+30806790 MS.gene92789:CDS
AGATTCAATGATAACTGTGG+AGG 0.664899 7.4:+30806793 MS.gene92789:CDS
TCAAGAGCTAGAGACAGTAG+TGG 0.680719 7.4:-30807884 None:intergenic
AGTGGCTTCAGAAAATGATG+AGG 0.701725 7.4:+30807651 MS.gene92789:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATACTAATAAAAATTG+TGG + chr7.4:30807541-30807560 MS.gene92789:intron 10.0%
!! TATATAATTGAGTAAATGAA+AGG - chr7.4:30806905-30806924 None:intergenic 15.0%
!!! TAATAATTAGAGTTTGAAAT+TGG + chr7.4:30807518-30807537 MS.gene92789:intron 15.0%
!!! TTCAAAATCATTCTAATTTT+TGG + chr7.4:30807145-30807164 MS.gene92789:intron 15.0%
!!! TTTTTAATTCATACTTCTAA+TGG + chr7.4:30806933-30806952 MS.gene92789:intron 15.0%
!!! TTTTTAATTCATACTTTCAA+TGG - chr7.4:30806973-30806992 None:intergenic 15.0%
!! TCTTGATATTAAAGCAAAAT+CGG - chr7.4:30807238-30807257 None:intergenic 20.0%
!! TTGCAATATAAAGATTTCTA+AGG + chr7.4:30807191-30807210 MS.gene92789:intron 20.0%
!!! ATTAGAATGATTTTGAATTG+TGG - chr7.4:30807142-30807161 None:intergenic 20.0%
! AAACACAAAATGAAGATCTA+TGG + chr7.4:30807674-30807693 MS.gene92789:CDS 25.0%
! AACACAAAATGAAGATCTAT+GGG + chr7.4:30807675-30807694 MS.gene92789:CDS 25.0%
! AGACAAATTAAAGAGAGTAA+AGG - chr7.4:30807456-30807475 None:intergenic 25.0%
! ATACTAATAAAAATTGTGGC+AGG + chr7.4:30807545-30807564 MS.gene92789:intron 25.0%
! ATGTACAATGATAATTGCAA+CGG - chr7.4:30807399-30807418 None:intergenic 25.0%
! GATATGTACAATGATAATTG+TGG - chr7.4:30807431-30807450 None:intergenic 25.0%
! TTTGACATGTTTGACAAAAA+TGG + chr7.4:30806770-30806789 MS.gene92789:CDS 25.0%
!! CGGTAATATAAAGAATTTTG+AGG - chr7.4:30807379-30807398 None:intergenic 25.0%
!! CTTCTAATGGTTTGAAATTA+CGG + chr7.4:30806946-30806965 MS.gene92789:intron 25.0%
!!! TGTTGATTTTCATGAATTCA+AGG + chr7.4:30807849-30807868 MS.gene92789:CDS 25.0%
AATTGAGTAAATGAAAGGTG+TGG - chr7.4:30806900-30806919 None:intergenic 30.0%
CCTTATATCGTGTAAAAAAG+TGG + chr7.4:30807323-30807342 MS.gene92789:intron 30.0%
GACAGTCGTAATTATGTTAT+GGG + chr7.4:30807300-30807319 MS.gene92789:intron 30.0%
TGACAGTCGTAATTATGTTA+TGG + chr7.4:30807299-30807318 MS.gene92789:intron 30.0%
! ACGAAGTGTTTAAATAGTAG+TGG - chr7.4:30807480-30807499 None:intergenic 30.0%
! ATGATTTTGAATTGTGGTTG+CGG - chr7.4:30807136-30807155 None:intergenic 30.0%
!!! CCACTTTTTTACACGATATA+AGG - chr7.4:30807326-30807345 None:intergenic 30.0%
AAGGAATTGCAAGTTGTGTT+AGG + chr7.4:30807745-30807764 MS.gene92789:CDS 35.0%
ACGACTGTCATGTATAATCA+TGG - chr7.4:30807289-30807308 None:intergenic 35.0%
ACTAACGTATGAAGATTTCG+TGG + chr7.4:30807594-30807613 MS.gene92789:CDS 35.0%
ACTGTCATGTATAATCATGG+TGG - chr7.4:30807286-30807305 None:intergenic 35.0%
AGATTCAATGATAACTGTGG+AGG + chr7.4:30806793-30806812 MS.gene92789:CDS 35.0%
AGGAATTGCAAGTTGTGTTA+GGG + chr7.4:30807746-30807765 MS.gene92789:CDS 35.0%
ATTAATTCACGCTGCATCAA+TGG + chr7.4:30807062-30807081 MS.gene92789:intron 35.0%
ATTAGAAGCTGAGTTCAAAG+AGG + chr7.4:30806844-30806863 MS.gene92789:CDS 35.0%
CTAACGTATGAAGATTTCGT+GGG + chr7.4:30807595-30807614 MS.gene92789:CDS 35.0%
GAGAAAAGACTAGATATGTG+AGG + chr7.4:30807007-30807026 MS.gene92789:intron 35.0%
TGAACTAACTCACTTGATCA+TGG - chr7.4:30806876-30806895 None:intergenic 35.0%
TGATGGTTACATATCAGCTA+AGG + chr7.4:30807726-30807745 MS.gene92789:CDS 35.0%
TGGAGATTCAATGATAACTG+TGG + chr7.4:30806790-30806809 MS.gene92789:CDS 35.0%
! TTCAAGGTGTTTGATGAAGA+TGG + chr7.4:30807703-30807722 MS.gene92789:CDS 35.0%
AACCATGCGCAATTGAGATT+AGG - chr7.4:30807173-30807192 None:intergenic 40.0%
AGTGGCTTCAGAAAATGATG+AGG + chr7.4:30807651-30807670 MS.gene92789:CDS 40.0%
GAAAATCAACACGACCATCA+TGG - chr7.4:30807840-30807859 None:intergenic 40.0%
GTGTTTGATGAAGATGGTGA+TGG + chr7.4:30807709-30807728 MS.gene92789:CDS 40.0%
TACAATAAGCGCAATCGTAG+TGG + chr7.4:30807104-30807123 MS.gene92789:intron 40.0%
TCTGTTGATACCAACCATGA+TGG + chr7.4:30807823-30807842 MS.gene92789:CDS 40.0%
TGTCAAATATTCGTCGCAGA+CGG - chr7.4:30806757-30806776 None:intergenic 40.0%
TTCCTAATCTCAATTGCGCA+TGG + chr7.4:30807168-30807187 MS.gene92789:intron 40.0%
! TGGGGATACATATTTTGCAG+TGG + chr7.4:30807633-30807652 MS.gene92789:CDS 40.0%
!! AGATCTATGGGAAGCATTCA+AGG + chr7.4:30807687-30807706 MS.gene92789:CDS 40.0%
AACTGTGGAGGAAATAAGCC+AGG + chr7.4:30806805-30806824 MS.gene92789:CDS 45.0%
ACTCAGCTTCTAATCCCAAC+AGG - chr7.4:30806838-30806857 None:intergenic 45.0%
AGGTCTCTCTAACGACATCA+TGG - chr7.4:30807359-30807378 None:intergenic 45.0%
ATCAACACGACCATCATGGT+TGG - chr7.4:30807836-30807855 None:intergenic 45.0%
CAAGTTGTGTTAGGGAAGCT+TGG + chr7.4:30807754-30807773 MS.gene92789:CDS 45.0%
CATCGCCATCAAAGTCGTTT+CGG + chr7.4:30806705-30806724 MS.gene92789:CDS 45.0%
TCAAGAGCTAGAGACAGTAG+TGG - chr7.4:30807887-30807906 None:intergenic 45.0%
TGGCAGGTCATACATAAAGC+CGG + chr7.4:30807561-30807580 MS.gene92789:intron 45.0%
!! ACGACTTTGATGGCGATGAT+AGG - chr7.4:30806703-30806722 None:intergenic 45.0%
CGAAGCCGAAACGACTTTGA+TGG - chr7.4:30806713-30806732 None:intergenic 50.0%
GGAAGCTTGGACTTGTGGAA+GGG + chr7.4:30807767-30807786 MS.gene92789:CDS 50.0%
GGCAGGTCATACATAAAGCC+GGG + chr7.4:30807562-30807581 MS.gene92789:intron 50.0%
GTTAGGGAAGCTTGGACTTG+TGG + chr7.4:30807762-30807781 MS.gene92789:CDS 50.0%
TACATAAAGCCGGGCAACGT+AGG + chr7.4:30807571-30807590 MS.gene92789:CDS 50.0%
TACGTTAGTCCTACGTTGCC+CGG - chr7.4:30807583-30807602 None:intergenic 50.0%
TGGGATTGCACGAGTCACTT+GGG + chr7.4:30807614-30807633 MS.gene92789:CDS 50.0%
AAGCCAGGCTCTCAACCTGT+TGG + chr7.4:30806820-30806839 MS.gene92789:CDS 55.0%
AGCCAGGCTCTCAACCTGTT+GGG + chr7.4:30806821-30806840 MS.gene92789:CDS 55.0%
GGGAAGCTTGGACTTGTGGA+AGG + chr7.4:30807766-30807785 MS.gene92789:CDS 55.0%
GGGATTGCACGAGTCACTTG+GGG + chr7.4:30807615-30807634 MS.gene92789:CDS 55.0%
GTGGGATTGCACGAGTCACT+TGG + chr7.4:30807613-30807632 MS.gene92789:CDS 55.0%
! ATCCCAACAGGTTGAGAGCC+TGG - chr7.4:30806826-30806845 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 30806686 30807906 30806686 ID=MS.gene92789
chr7.4 mRNA 30806686 30807906 30806686 ID=MS.gene92789.t1;Parent=MS.gene92789
chr7.4 exon 30806686 30806882 30806686 ID=MS.gene92789.t1.exon1;Parent=MS.gene92789.t1
chr7.4 CDS 30806686 30806882 30806686 ID=cds.MS.gene92789.t1;Parent=MS.gene92789.t1
chr7.4 exon 30807567 30807906 30807567 ID=MS.gene92789.t1.exon2;Parent=MS.gene92789.t1
chr7.4 CDS 30807567 30807906 30807567 ID=cds.MS.gene92789.t1;Parent=MS.gene92789.t1
Gene Sequence

>MS.gene92789

ATGGGAGAAATGAACCTATCATCGCCATCAAAGTCGTTTCGGCTTCGAAGTCAGAGTCTCAACTCGCTCCGTCTGCGACGAATATTTGACATGTTTGACAAAAATGGAGATTCAATGATAACTGTGGAGGAAATAAGCCAGGCTCTCAACCTGTTGGGATTAGAAGCTGAGTTCAAAGAGGTTGATTCCATGATCAAGTGAGTTAGTTCATCCACACCTTTCATTTACTCAATTATATATATTCATATTTTTAATTCATACTTCTAATGGTTTGAAATTACGGACCATTGAAAGTATGAATTAAAAATACGAGATTATAGAGAGAAAAGACTAGATATGTGAGGTATATGATAAATAATATTTGATGCTGACAATAATTAATTCACGCTGCATCAATGGCAATACATATCACAACAGCTACAATAAGCGCAATCGTAGTGGTTGCGACCGCAACCACAATTCAAAATCATTCTAATTTTTGGTTCCTAATCTCAATTGCGCATGGTTGCAATATAAAGATTTCTAAGGTCTATACAAACGCAATTTCAGCCGATTTTGCTTTAATATCAAGATTCACACATTAACAACAATTTACAACCACCATGATTATACATGACAGTCGTAATTATGTTATGGGCCTTATATCGTGTAAAAAAGTGGTTGATTGCGACCATGATGTCGTTAGAGAGACCTCAAAATTCTTTATATTACCGTTGCAATTATCATTGTACATAAGATAAGACCACAATTATCATTGTACATATCTTCCTTTACTCTCTTTAATTTGTCTTCCACTACTATTTAAACACTTCGTTATTGCTAGTTTTTACAATAATAATTAGAGTTTGAAATTGGAAATATACTAATAAAAATTGTGGCAGGTCATACATAAAGCCGGGCAACGTAGGACTAACGTATGAAGATTTCGTGGGATTGCACGAGTCACTTGGGGATACATATTTTGCAGTGGCTTCAGAAAATGATGAGGAAACACAAAATGAAGATCTATGGGAAGCATTCAAGGTGTTTGATGAAGATGGTGATGGTTACATATCAGCTAAGGAATTGCAAGTTGTGTTAGGGAAGCTTGGACTTGTGGAAGGGAACTTGATTGATAATGTTCAACGAATGATTTTGTCTGTTGATACCAACCATGATGGTCGTGTTGATTTTCATGAATTCAAGGATATGATGCGCACCACTACTGTCTCTAGCTCTTGA
Protein sequence

>MS.gene92789.t1

MGEMNLSSPSKSFRLRSQSLNSLRLRRIFDMFDKNGDSMITVEEISQALNLLGLEAEFKEVDSMIKSYIKPGNVGLTYEDFVGLHESLGDTYFAVASENDEETQNEDLWEAFKVFDEDGDGYISAKELQVVLGKLGLVEGNLIDNVQRMILSVDTNHDGRVDFHEFKDMMRTTTVSSS