AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28999


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28999.t1 MTR_3g076530 95.758 165 7 0 1 165 212 376 1.01e-111 327
MS.gene28999.t1 MTR_6g035100 46.707 167 88 1 1 167 206 371 7.60e-51 170
MS.gene28999.t1 MTR_4g133750 46.154 169 88 2 1 167 207 374 3.41e-48 163
MS.gene28999.t1 MTR_6g034965 44.311 167 92 1 1 167 206 371 2.84e-47 160
MS.gene28999.t1 MTR_5g019010 44.311 167 85 1 7 165 210 376 1.46e-45 156
MS.gene28999.t1 MTR_3g057860 45.122 164 85 2 7 165 212 375 1.16e-44 154
MS.gene28999.t1 MTR_3g058220 41.071 168 93 1 4 165 207 374 5.96e-44 152
MS.gene28999.t1 MTR_3g057910 45.509 167 82 2 7 165 211 376 1.48e-43 151
MS.gene28999.t1 MTR_5g018990 45.732 164 81 2 10 165 214 377 1.77e-43 150
MS.gene28999.t1 MTR_8g469300 43.182 176 88 3 1 168 210 381 1.00e-42 149
MS.gene28999.t1 MTR_4g104540 43.114 167 93 1 1 165 138 304 2.75e-42 146
MS.gene28999.t1 MTR_4g133760 45.238 168 87 3 4 167 106 272 4.03e-42 145
MS.gene28999.t1 MTR_3g057800 40.588 170 96 1 1 165 203 372 4.89e-42 147
MS.gene28999.t1 MTR_5g094560 43.750 160 88 2 8 165 214 373 9.62e-42 146
MS.gene28999.t1 MTR_8g468780 42.286 175 91 4 1 168 141 312 1.51e-41 144
MS.gene28999.t1 MTR_5g094540 43.373 166 92 2 2 165 208 373 1.54e-41 145
MS.gene28999.t1 MTR_5g018980 44.118 170 84 2 7 165 210 379 1.59e-41 145
MS.gene28999.t1 MTR_5g094660 41.212 165 96 1 2 165 208 372 1.66e-41 145
MS.gene28999.t1 MTR_4g089030 41.520 171 94 1 1 165 220 390 4.17e-41 144
MS.gene28999.t1 MTR_5g073250 43.713 167 90 3 2 165 208 373 4.85e-41 144
MS.gene28999.t1 MTR_8g466180 40.120 167 92 2 7 165 208 374 5.45e-41 144
MS.gene28999.t1 MTR_0022s0290 41.618 173 90 1 4 165 217 389 1.13e-40 143
MS.gene28999.t1 MTR_3g058210 40.116 172 96 2 1 165 205 376 1.43e-40 143
MS.gene28999.t1 MTR_5g073320 43.114 167 91 3 2 165 209 374 1.46e-40 143
MS.gene28999.t1 MTR_3g058230 41.104 163 92 1 7 165 139 301 1.62e-40 141
MS.gene28999.t1 MTR_3g076560 42.484 153 88 0 13 165 236 388 1.79e-40 143
MS.gene28999.t1 MTR_4g104610 40.341 176 94 2 1 165 199 374 1.89e-40 142
MS.gene28999.t1 MTR_3g058380 38.788 165 95 1 7 165 130 294 2.49e-40 141
MS.gene28999.t1 MTR_4g089020 41.916 167 92 1 4 165 200 366 6.05e-40 141
MS.gene28999.t1 MTR_5g094520 42.771 166 93 2 2 165 134 299 7.30e-40 140
MS.gene28999.t1 MTR_5g094550 44.375 160 87 2 8 165 214 373 8.97e-40 140
MS.gene28999.t1 MTR_5g094570 42.169 166 94 2 2 165 208 373 1.74e-39 140
MS.gene28999.t1 MTR_4g089025 43.114 167 90 1 4 165 225 391 1.99e-39 140
MS.gene28999.t1 MTR_4g104640 41.975 162 89 1 9 165 229 390 3.83e-39 139
MS.gene28999.t1 MTR_3g058110 43.713 167 86 3 7 165 212 378 4.37e-39 139
MS.gene28999.t1 MTR_5g094520 42.771 166 93 2 2 165 239 404 5.05e-39 139
MS.gene28999.t1 MTR_4g048580 40.964 166 96 2 2 165 208 373 6.18e-39 138
MS.gene28999.t1 MTR_4g104550 40.828 169 94 2 1 165 199 365 6.42e-39 138
MS.gene28999.t1 MTR_0171s0020 41.808 177 91 3 1 168 210 383 7.34e-39 138
MS.gene28999.t1 MTR_3g025260 42.771 166 90 4 1 163 210 373 1.75e-38 137
MS.gene28999.t1 MTR_0181s0030 42.105 171 94 2 1 167 207 376 1.80e-38 137
MS.gene28999.t1 MTR_0171s0030 40.113 177 94 4 1 168 122 295 1.83e-38 136
MS.gene28999.t1 MTR_5g073230 40.476 168 95 4 2 165 196 362 6.17e-38 135
MS.gene28999.t1 MTR_3g058240 39.610 154 86 1 7 153 175 328 6.32e-37 132
MS.gene28999.t1 MTR_3g058060 39.157 166 94 2 7 165 212 377 6.84e-37 134
MS.gene28999.t1 MTR_3g058250 40.909 154 84 1 7 153 209 362 1.03e-36 132
MS.gene28999.t1 MTR_3g058000 38.824 170 96 2 4 165 209 378 1.18e-36 132
MS.gene28999.t1 MTR_1g035140 41.463 164 90 3 10 167 213 376 1.37e-36 132
MS.gene28999.t1 MTR_3g058390 41.558 154 83 1 7 153 209 362 1.88e-36 132
MS.gene28999.t1 MTR_6g462640 40.397 151 83 1 10 153 212 362 3.24e-36 131
MS.gene28999.t1 MTR_3g057970 40.645 155 80 3 10 159 210 357 4.46e-36 130
MS.gene28999.t1 MTR_1g023730 41.176 170 95 2 1 165 215 384 5.45e-36 130
MS.gene28999.t1 MTR_5g094840 43.151 146 80 2 11 153 222 367 9.86e-36 130
MS.gene28999.t1 MTR_0059s0170 41.463 164 87 3 10 165 213 375 1.04e-35 130
MS.gene28999.t1 MTR_7g012860 40.361 166 96 1 1 163 207 372 1.88e-35 129
MS.gene28999.t1 MTR_0287s0060 40.361 166 96 1 1 163 207 372 1.88e-35 129
MS.gene28999.t1 MTR_4g026030 38.323 167 101 1 1 165 51 217 3.24e-35 126
MS.gene28999.t1 MTR_4g104660 40.491 163 90 3 9 165 225 386 3.41e-35 129
MS.gene28999.t1 MTR_3g058400 39.103 156 89 1 4 153 208 363 3.96e-35 128
MS.gene28999.t1 MTR_1g442730 40.625 160 87 3 2 153 202 361 6.02e-35 128
MS.gene28999.t1 MTR_3g057900 37.805 164 87 3 4 159 207 363 6.28e-35 127
MS.gene28999.t1 MTR_3g057980 36.527 167 91 2 7 165 210 369 7.24e-35 127
MS.gene28999.t1 MTR_4g026050 41.916 167 95 1 1 165 203 369 9.16e-35 127
MS.gene28999.t1 MTR_4g026200 39.521 167 99 1 1 165 203 369 1.23e-34 127
MS.gene28999.t1 MTR_3g024520 42.941 170 87 4 3 163 205 373 1.57e-34 127
MS.gene28999.t1 MTR_4g089055 39.521 167 96 1 4 165 222 388 2.32e-34 126
MS.gene28999.t1 MTR_7g028020 39.306 173 87 3 7 165 202 370 3.52e-34 126
MS.gene28999.t1 MTR_3g025230 42.941 170 87 4 3 163 205 373 4.38e-34 125
MS.gene28999.t1 MTR_7g027960 39.306 173 87 3 7 165 202 370 5.07e-34 125
MS.gene28999.t1 MTR_5g070920 40.936 171 94 4 1 165 206 375 1.01e-33 124
MS.gene28999.t1 MTR_7g012330 39.157 166 96 2 1 163 208 371 1.45e-33 124
MS.gene28999.t1 MTR_3g076550 40.994 161 75 2 9 165 217 361 1.69e-33 123
MS.gene28999.t1 MTR_1g107295 37.640 178 97 2 1 165 211 387 2.23e-33 124
MS.gene28999.t1 MTR_3g436390 36.076 158 98 3 9 165 217 372 2.39e-33 123
MS.gene28999.t1 MTR_5g095290 38.462 169 101 2 1 167 209 376 2.86e-33 123
MS.gene28999.t1 MTR_8g020950 39.286 168 98 2 1 165 213 379 3.27e-33 123
MS.gene28999.t1 MTR_4g109470 38.415 164 98 3 1 163 209 370 4.84e-33 122
MS.gene28999.t1 MTR_4g062510 37.640 178 97 2 1 165 210 386 9.36e-33 122
MS.gene28999.t1 MTR_0171s0010 36.158 177 103 4 1 168 210 385 1.18e-32 122
MS.gene28999.t1 MTR_5g470730 38.372 172 98 4 1 165 206 376 1.91e-32 120
MS.gene28999.t1 MTR_5g095260 38.994 159 93 2 12 167 220 377 2.04e-32 121
MS.gene28999.t1 MTR_0638s0020 37.725 167 101 3 1 165 137 302 3.60e-32 119
MS.gene28999.t1 MTR_3g436540 35.542 166 102 3 1 163 214 377 3.85e-32 120
MS.gene28999.t1 MTR_0554s0020 40.523 153 85 1 7 153 211 363 4.03e-32 120
MS.gene28999.t1 MTR_1g035190 38.750 160 90 3 2 153 188 347 6.15e-32 119
MS.gene28999.t1 MTR_5g023680 40.000 155 91 1 1 153 179 333 1.33e-31 118
MS.gene28999.t1 MTR_8g020960 36.310 168 103 3 1 165 212 378 1.36e-31 119
MS.gene28999.t1 MTR_5g021390 37.778 180 99 4 1 168 211 389 2.33e-31 118
MS.gene28999.t1 MTR_8g020940 37.500 168 101 3 1 165 211 377 3.35e-31 117
MS.gene28999.t1 MTR_3g020780 35.593 177 99 3 1 165 208 381 4.42e-31 117
MS.gene28999.t1 MTR_6g035115 37.126 167 102 2 1 165 205 370 5.40e-31 117
MS.gene28999.t1 MTR_1g023720 39.241 158 91 2 1 153 215 372 6.47e-31 117
MS.gene28999.t1 MTR_1g023700 37.342 158 94 1 1 153 216 373 6.58e-31 117
MS.gene28999.t1 MTR_2g065360 37.349 166 101 3 2 165 181 345 6.85e-31 116
MS.gene28999.t1 MTR_4g062500 35.393 178 99 4 1 165 208 382 9.10e-31 116
MS.gene28999.t1 MTR_7g056103 39.181 171 95 4 4 167 210 378 2.70e-30 115
MS.gene28999.t1 MTR_5g073020 36.686 169 103 2 1 165 207 375 2.97e-30 115
MS.gene28999.t1 MTR_5g045770 37.870 169 99 2 1 165 203 369 6.23e-30 114
MS.gene28999.t1 MTR_8g076290 37.222 180 99 4 1 167 202 380 7.84e-30 114
MS.gene28999.t1 MTR_4g025970 37.278 169 100 2 1 165 204 370 2.95e-29 112
MS.gene28999.t1 MTR_5g072980 38.554 166 98 3 4 165 210 375 3.57e-29 112
MS.gene28999.t1 MTR_5g072930 38.554 166 98 3 4 165 210 375 3.57e-29 112
MS.gene28999.t1 MTR_5g070710 35.882 170 103 3 1 165 205 373 4.70e-29 112
MS.gene28999.t1 MTR_5g070690 36.782 174 98 5 1 165 204 374 5.15e-29 111
MS.gene28999.t1 MTR_5g070800 36.782 174 98 5 1 165 204 374 5.15e-29 111
MS.gene28999.t1 MTR_6g008530 36.686 169 99 3 2 163 231 398 5.67e-29 112
MS.gene28999.t1 MTR_7g087520 38.182 165 93 3 8 165 221 383 6.06e-29 111
MS.gene28999.t1 MTR_5g070700 37.278 169 98 4 4 165 209 376 6.14e-29 111
MS.gene28999.t1 MTR_4g088195 32.143 168 102 3 7 164 207 372 8.55e-29 111
MS.gene28999.t1 MTR_7g092600 35.766 137 87 1 27 162 238 374 9.26e-29 111
MS.gene28999.t1 MTR_0451s0010 41.844 141 78 3 29 165 55 195 1.87e-28 107
MS.gene28999.t1 MTR_5g070850 36.047 172 102 4 1 165 206 376 1.97e-28 110
MS.gene28999.t1 MTR_4g088170 32.143 168 102 3 7 164 207 372 2.00e-28 110
MS.gene28999.t1 MTR_7g092620 37.427 171 94 3 8 168 214 381 2.53e-28 109
MS.gene28999.t1 MTR_8g091690 34.637 179 110 4 1 173 199 376 5.41e-28 108
MS.gene28999.t1 MTR_6g084770 39.157 166 92 5 8 165 213 377 7.10e-28 108
MS.gene28999.t1 MTR_1g037370 38.150 173 91 6 4 165 200 367 1.09e-27 108
MS.gene28999.t1 MTR_6g084900 40.288 139 76 2 34 165 1 139 1.27e-27 104
MS.gene28999.t1 MTR_4g025980 37.662 154 95 1 1 153 204 357 1.98e-27 107
MS.gene28999.t1 MTR_4g088160 30.357 168 105 3 7 164 207 372 2.12e-27 107
MS.gene28999.t1 MTR_8g046240 36.571 175 93 5 4 165 210 379 3.18e-27 106
MS.gene28999.t1 MTR_2g010530 36.478 159 92 2 1 154 202 356 3.74e-27 106
MS.gene28999.t1 MTR_4g102310 33.728 169 108 2 4 169 215 382 4.80e-27 106
MS.gene28999.t1 MTR_5g070830 34.940 166 98 4 8 165 323 486 7.77e-27 106
MS.gene28999.t1 MTR_4g071710 32.796 186 105 4 1 167 204 388 1.29e-26 105
MS.gene28999.t1 MTR_5g095220 32.143 168 111 2 1 167 181 346 1.46e-26 104
MS.gene28999.t1 MTR_4g102280 34.118 170 107 3 4 169 220 388 2.00e-26 104
MS.gene28999.t1 MTR_8g091680 42.276 123 70 1 44 165 202 324 2.41e-26 103
MS.gene28999.t1 MTR_6g008650 33.929 168 104 2 2 163 228 394 2.50e-26 104
MS.gene28999.t1 MTR_6g008600 34.524 168 103 2 2 163 230 396 2.65e-26 104
MS.gene28999.t1 MTR_8g036185 34.637 179 103 4 1 167 208 384 3.58e-26 103
MS.gene28999.t1 MTR_8g104030 36.364 154 88 4 25 168 3 156 1.52e-25 99.4
MS.gene28999.t1 MTR_6g008620 34.731 167 103 2 2 163 229 394 2.84e-25 101
MS.gene28999.t1 MTR_3g014880 35.503 169 101 2 2 163 228 395 3.61e-25 101
MS.gene28999.t1 MTR_3g057870 50.575 87 38 1 79 165 30 111 5.04e-25 97.1
MS.gene28999.t1 MTR_4g078110 35.185 162 99 3 7 165 192 350 6.09e-25 100
MS.gene28999.t1 MTR_5g045250 30.952 168 106 4 1 164 230 391 6.72e-25 100
MS.gene28999.t1 MTR_6g008500 33.939 165 102 2 4 162 240 403 8.27e-25 100
MS.gene28999.t1 MTR_3g077460 35.211 142 75 2 24 165 170 294 6.11e-24 96.7
MS.gene28999.t1 MTR_1g103670 36.585 164 93 5 7 165 213 370 7.62e-24 97.4
MS.gene28999.t1 MTR_2g437840 33.129 163 104 3 2 164 213 370 8.19e-24 97.4
MS.gene28999.t1 MTR_1g097220 30.120 166 110 2 1 164 236 397 1.11e-23 97.1
MS.gene28999.t1 MTR_6g008640 33.136 169 107 2 2 165 227 394 1.12e-23 97.1
MS.gene28999.t1 MTR_4g095050 33.939 165 105 3 1 165 215 375 1.69e-23 96.3
MS.gene28999.t1 MTR_2g073420 33.526 173 102 4 3 165 212 381 2.32e-23 95.9
MS.gene28999.t1 MTR_1g091003 36.158 177 92 5 3 165 200 369 3.98e-23 95.1
MS.gene28999.t1 MTR_7g075610 32.370 173 105 3 4 165 205 376 4.63e-23 95.1
MS.gene28999.t1 MTR_5g007460 36.420 162 97 3 7 165 191 349 5.33e-23 94.7
MS.gene28999.t1 MTR_8g046210 36.145 166 88 5 4 156 210 370 5.94e-23 94.7
MS.gene28999.t1 MTR_4g018800 32.934 167 106 2 2 163 229 394 8.31e-23 94.4
MS.gene28999.t1 MTR_7g075540 35.119 168 103 4 1 165 209 373 1.85e-22 93.6
MS.gene28999.t1 MTR_5g016410 32.727 165 106 3 1 165 212 371 2.21e-22 93.2
MS.gene28999.t1 MTR_4g094772 33.533 167 102 4 1 165 203 362 2.81e-22 92.8
MS.gene28999.t1 MTR_1750s0010 58.108 74 31 0 92 165 1 74 3.97e-22 87.4
MS.gene28999.t1 MTR_0608s0010 37.589 141 80 3 29 165 220 356 4.27e-22 91.7
MS.gene28999.t1 MTR_8g104100 37.500 136 76 3 42 168 2 137 5.34e-22 89.7
MS.gene28999.t1 MTR_4g077210 29.341 167 112 4 1 165 214 376 6.02e-22 92.0
MS.gene28999.t1 MTR_1g031710 32.099 162 79 2 4 165 50 180 8.40e-22 89.7
MS.gene28999.t1 MTR_6g042610 33.333 171 102 5 2 163 221 388 9.55e-22 91.7
MS.gene28999.t1 MTR_1g031700 35.583 163 96 4 7 165 213 370 1.11e-21 91.3
MS.gene28999.t1 MTR_5g094510 41.045 134 56 4 34 165 1 113 1.14e-21 88.6
MS.gene28999.t1 MTR_6g042540 32.143 168 107 3 2 163 221 387 1.48e-21 90.9
MS.gene28999.t1 MTR_5g007550 35.542 166 97 5 4 165 211 370 1.58e-21 90.9
MS.gene28999.t1 MTR_7g075580 35.000 160 98 3 10 165 218 375 1.79e-21 90.5
MS.gene28999.t1 MTR_7g103450 33.333 162 103 4 7 165 229 388 1.79e-21 90.5
MS.gene28999.t1 MTR_5g007450 36.145 166 96 5 4 165 211 370 1.96e-21 90.5
MS.gene28999.t1 MTR_8g027040 31.737 167 103 5 1 164 258 416 4.97e-21 89.4
MS.gene28999.t1 MTR_1g116890 37.107 159 96 3 10 165 222 379 7.24e-21 89.0
MS.gene28999.t1 MTR_1g097240 32.727 165 92 5 4 153 197 357 8.59e-21 88.6
MS.gene28999.t1 MTR_1g055325 31.214 173 106 5 3 165 222 391 1.07e-20 88.6
MS.gene28999.t1 MTR_4g035330 33.333 165 105 3 1 165 200 359 1.55e-20 87.8
MS.gene28999.t1 MTR_4g094775 32.727 165 106 3 1 165 212 371 3.05e-20 87.0
MS.gene28999.t1 MTR_3g467220 32.026 153 97 4 11 159 238 387 4.61e-20 86.7
MS.gene28999.t1 MTR_6g008430 31.548 168 104 5 2 163 225 387 5.90e-20 86.3
MS.gene28999.t1 MTR_2g073480 34.286 140 87 2 29 165 149 286 6.43e-20 85.9
MS.gene28999.t1 MTR_8g012585 33.333 162 99 5 8 163 162 320 6.47e-20 86.3
MS.gene28999.t1 MTR_6g022450 32.335 167 108 3 1 165 220 383 6.56e-20 86.3
MS.gene28999.t1 MTR_2g073440 34.286 140 87 2 29 165 216 353 6.94e-20 85.9
MS.gene28999.t1 MTR_1g103680 33.758 157 95 4 1 153 208 359 6.98e-20 86.3
MS.gene28999.t1 MTR_2g437880 30.769 156 105 2 1 156 215 367 9.21e-20 85.9
MS.gene28999.t1 MTR_4g104570 49.315 73 37 0 93 165 1 73 1.19e-19 82.0
MS.gene28999.t1 MTR_1g091010 32.948 173 103 4 3 165 199 368 1.67e-19 85.1
MS.gene28999.t1 MTR_1g091023 32.370 173 104 4 3 165 200 369 2.38e-19 84.7
MS.gene28999.t1 MTR_5g016440 30.303 165 111 3 1 165 206 366 3.75e-19 84.0
MS.gene28999.t1 MTR_4g088425 34.545 165 101 3 4 165 215 375 4.74e-19 83.6
MS.gene28999.t1 MTR_5g094790 35.115 131 76 4 17 142 94 220 9.73e-19 80.1
MS.gene28999.t1 MTR_8g012590 32.353 170 107 5 1 165 206 372 1.71e-18 82.0
MS.gene28999.t1 MTR_3g467200 30.921 152 100 4 11 159 243 392 3.13e-18 81.3
MS.gene28999.t1 MTR_8g073950 32.484 157 99 4 7 159 232 385 3.27e-18 81.3
MS.gene28999.t1 MTR_8g073960 32.484 157 99 4 7 159 236 389 4.64e-18 80.9
MS.gene28999.t1 MTR_5g056720 30.247 162 94 3 7 165 155 300 5.23e-18 80.5
MS.gene28999.t1 MTR_1g107300 49.275 69 35 0 97 165 7 75 1.05e-17 77.4
MS.gene28999.t1 MTR_7g075390 32.500 160 98 5 4 156 212 368 3.21e-17 78.6
MS.gene28999.t1 MTR_4g062530 35.433 127 68 3 7 123 205 327 6.48e-17 77.4
MS.gene28999.t1 MTR_3g467290 30.719 153 101 3 11 159 246 397 6.66e-17 77.8
MS.gene28999.t1 MTR_8g080520 29.091 165 110 4 1 164 242 400 8.50e-17 77.4
MS.gene28999.t1 MTR_2g450040 33.742 163 104 2 4 163 224 385 1.71e-16 76.3
MS.gene28999.t1 MTR_7g075600 30.000 150 100 3 10 156 219 366 6.36e-16 74.7
MS.gene28999.t1 MTR_4g026080 49.315 73 37 0 93 165 1 73 6.42e-16 72.4
MS.gene28999.t1 MTR_3g465300 29.032 155 105 4 11 162 240 392 8.24e-16 74.3
MS.gene28999.t1 MTR_6g008630 43.590 78 44 0 86 163 227 304 2.29e-15 73.2
MS.gene28999.t1 MTR_8g076390 29.586 169 100 5 7 159 236 401 4.97e-15 72.4
MS.gene28999.t1 MTR_3g025250 32.544 169 62 7 3 163 19 143 6.83e-15 70.9
MS.gene28999.t1 MTR_1g111240 30.573 157 101 5 12 165 254 405 1.61e-14 70.9
MS.gene28999.t1 MTR_4g088420 44.872 78 39 1 86 163 28 101 1.96e-14 68.9
MS.gene28999.t1 MTR_4g088400 31.707 164 108 3 1 163 229 389 3.58e-14 69.7
MS.gene28999.t1 MTR_5g075450 29.814 161 100 5 12 165 222 376 1.40e-13 68.2
MS.gene28999.t1 MTR_8g035760 28.859 149 85 3 29 163 243 384 8.17e-13 65.9
MS.gene28999.t1 MTR_8g035680 26.846 149 87 3 29 162 243 384 9.39e-12 62.8
MS.gene28999.t1 MTR_8g035680 26.846 149 87 3 29 162 96 237 9.83e-12 62.4
MS.gene28999.t1 MTR_1g102220 31.126 151 80 5 29 163 237 379 2.78e-11 61.2
MS.gene28999.t1 MTR_8g035810 26.667 150 97 3 29 165 237 386 5.38e-11 60.5
MS.gene28999.t1 MTR_8g063280 32.317 164 101 6 10 165 209 370 6.01e-11 60.5
MS.gene28999.t1 MTR_4g026070 34.409 93 59 1 1 91 203 295 7.37e-11 59.7
MS.gene28999.t1 MTR_8g035810 27.027 148 95 3 29 163 237 384 8.12e-11 60.1
MS.gene28999.t1 MTR_1g492820 27.368 95 68 1 65 159 288 381 8.40e-11 60.1
MS.gene28999.t1 MTR_8g035810 27.027 148 95 3 29 163 237 384 9.03e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28999.t1 AT5G06900 41.420 169 97 2 1 168 209 376 3.11e-40 142
MS.gene28999.t1 AT4G13310 41.615 161 93 1 5 165 210 369 1.91e-38 135
MS.gene28999.t1 AT3G48300 40.000 165 97 1 1 165 196 358 8.14e-38 135
MS.gene28999.t1 AT3G48300 40.000 165 97 1 1 165 198 360 8.35e-38 135
MS.gene28999.t1 AT4G13310 41.615 161 93 1 5 165 210 369 1.10e-37 135
MS.gene28999.t1 AT3G48280 39.394 165 99 1 1 165 197 360 4.96e-37 133
MS.gene28999.t1 AT3G26210 43.038 158 86 3 12 165 216 373 1.52e-36 132
MS.gene28999.t1 AT1G13110 38.012 171 100 4 1 165 206 376 1.69e-36 132
MS.gene28999.t1 AT2G30750 43.791 153 83 2 7 158 211 361 1.88e-36 132
MS.gene28999.t1 AT3G48270 36.364 165 103 1 1 165 198 360 2.29e-36 131
MS.gene28999.t1 AT5G07990 40.719 167 92 3 1 163 206 369 4.70e-36 131
MS.gene28999.t1 AT3G26310 41.071 168 95 3 1 165 203 369 6.07e-36 130
MS.gene28999.t1 AT4G13290 39.752 161 88 2 5 165 211 362 1.05e-35 130
MS.gene28999.t1 AT3G48310 37.576 165 101 1 1 165 199 361 4.06e-35 128
MS.gene28999.t1 AT2G30770 38.509 161 94 3 7 165 211 368 9.50e-35 127
MS.gene28999.t1 AT1G33720 38.596 171 96 4 1 165 81 248 3.36e-34 124
MS.gene28999.t1 AT1G33720 38.596 171 96 4 1 165 81 248 3.36e-34 124
MS.gene28999.t1 AT1G33720 38.596 171 96 4 1 165 81 248 3.36e-34 124
MS.gene28999.t1 AT4G31500 38.554 166 101 1 1 165 203 368 5.43e-34 125
MS.gene28999.t1 AT3G26330 39.130 161 94 3 8 165 211 370 1.10e-33 124
MS.gene28999.t1 AT1G33720 38.596 171 96 4 1 165 213 380 1.82e-33 124
MS.gene28999.t1 AT2G24180 36.310 168 104 2 1 165 209 376 2.01e-33 124
MS.gene28999.t1 AT3G26300 39.286 168 98 3 1 165 204 370 2.40e-33 123
MS.gene28999.t1 AT3G26280 38.509 161 92 3 12 165 216 376 1.19e-32 121
MS.gene28999.t1 AT3G26280 38.509 161 92 3 12 165 233 393 1.22e-32 122
MS.gene28999.t1 AT1G13080 36.471 170 102 4 1 165 88 256 1.33e-32 120
MS.gene28999.t1 AT3G26320 39.130 161 94 3 8 165 211 370 1.79e-32 121
MS.gene28999.t1 AT5G25120 38.272 162 95 3 7 165 207 366 1.99e-32 121
MS.gene28999.t1 AT1G33730 39.306 173 92 5 1 165 77 244 2.59e-32 119
MS.gene28999.t1 AT1G33730 39.306 173 92 5 1 165 77 244 2.59e-32 119
MS.gene28999.t1 AT5G25180 37.037 162 97 3 7 165 207 366 3.05e-32 120
MS.gene28999.t1 AT5G57260 36.842 171 102 3 1 165 203 373 4.27e-32 120
MS.gene28999.t1 AT1G13080 36.471 170 102 4 1 165 206 374 4.92e-32 120
MS.gene28999.t1 AT3G26170 36.310 168 101 3 4 165 207 374 7.99e-32 119
MS.gene28999.t1 AT2G45570 40.964 166 88 4 7 165 219 381 1.09e-31 119
MS.gene28999.t1 AT5G24950 41.104 163 92 3 7 167 210 370 1.22e-31 119
MS.gene28999.t1 AT3G26180 36.310 168 101 3 4 165 207 374 1.47e-31 119
MS.gene28999.t1 AT3G48290 37.576 165 101 1 1 165 200 362 3.09e-31 117
MS.gene28999.t1 AT3G26160 36.310 168 101 3 4 165 207 374 3.50e-31 117
MS.gene28999.t1 AT5G25140 37.888 161 95 3 7 164 207 365 3.92e-31 117
MS.gene28999.t1 AT1G50560 38.636 132 81 0 34 165 253 384 6.67e-31 117
MS.gene28999.t1 AT2G45550 40.000 165 90 4 7 165 219 380 1.36e-30 116
MS.gene28999.t1 AT4G13770 34.969 163 103 2 6 165 209 371 1.57e-30 115
MS.gene28999.t1 AT1G01280 38.272 162 94 3 8 165 217 376 3.04e-30 115
MS.gene28999.t1 AT5G25130 37.500 160 99 1 7 165 207 366 3.07e-30 115
MS.gene28999.t1 AT1G11610 37.013 154 92 3 7 158 211 361 4.54e-30 114
MS.gene28999.t1 AT1G11610 37.013 154 92 3 7 158 211 361 5.12e-30 114
MS.gene28999.t1 AT2G42250 37.423 163 99 2 7 167 220 381 6.30e-30 114
MS.gene28999.t1 AT3G26230 39.521 167 90 6 9 165 207 372 8.36e-30 114
MS.gene28999.t1 AT1G13100 39.490 157 88 4 16 165 214 370 1.16e-29 113
MS.gene28999.t1 AT2G45560 39.130 161 90 3 10 165 223 380 1.39e-29 113
MS.gene28999.t1 AT5G44620 33.721 172 110 2 1 169 221 391 1.48e-29 113
MS.gene28999.t1 AT3G48320 38.255 149 90 1 8 156 206 352 1.61e-29 113
MS.gene28999.t1 AT1G13090 39.103 156 87 4 16 165 217 370 1.75e-29 113
MS.gene28999.t1 AT5G42580 37.879 132 82 0 34 165 234 365 1.36e-28 110
MS.gene28999.t1 AT3G26270 39.130 161 90 4 12 165 216 375 1.77e-28 110
MS.gene28999.t1 AT5G47990 37.313 134 79 2 34 164 249 380 1.87e-28 110
MS.gene28999.t1 AT5G24960 37.838 148 90 2 7 153 211 357 2.43e-28 108
MS.gene28999.t1 AT5G42590 33.775 151 100 0 4 154 207 357 2.76e-28 109
MS.gene28999.t1 AT1G50520 37.879 132 82 0 34 165 252 383 2.88e-28 110
MS.gene28999.t1 AT1G33720 34.184 196 95 6 1 165 81 273 3.13e-28 108
MS.gene28999.t1 AT4G15360 38.406 138 83 1 30 165 243 380 3.73e-28 109
MS.gene28999.t1 AT5G24960 37.838 148 90 2 7 153 211 357 7.20e-28 108
MS.gene28999.t1 AT3G26830 37.179 156 90 4 16 165 217 370 1.26e-27 107
MS.gene28999.t1 AT3G26150 34.524 168 104 4 4 165 207 374 2.99e-27 107
MS.gene28999.t1 AT4G12300 35.260 173 106 4 1 169 217 387 3.62e-27 106
MS.gene28999.t1 AT2G14100 34.752 141 92 0 24 164 240 380 3.91e-27 106
MS.gene28999.t1 AT3G26290 37.255 153 92 3 7 156 210 361 4.11e-27 106
MS.gene28999.t1 AT3G26290 37.255 153 92 3 7 156 223 374 5.05e-27 106
MS.gene28999.t1 AT3G20090 35.507 138 84 3 31 165 109 244 7.29e-27 104
MS.gene28999.t1 AT3G20090 35.252 139 85 3 30 165 246 382 9.23e-27 105
MS.gene28999.t1 AT3G26180 37.778 135 81 2 34 165 106 240 2.53e-26 103
MS.gene28999.t1 AT2G02580 37.500 152 91 3 8 156 211 361 3.45e-26 103
MS.gene28999.t1 AT3G48290 32.461 191 101 2 1 165 200 388 5.57e-26 103
MS.gene28999.t1 AT5G67310 37.349 166 100 3 1 165 218 380 6.86e-26 103
MS.gene28999.t1 AT5G06905 36.986 146 88 2 27 168 229 374 1.24e-25 102
MS.gene28999.t1 AT4G12320 31.429 175 112 4 1 169 217 389 1.92e-25 102
MS.gene28999.t1 AT4G15350 34.559 136 88 1 30 164 238 373 2.93e-25 101
MS.gene28999.t1 AT4G36220 33.158 190 100 4 1 168 207 391 3.08e-25 101
MS.gene28999.t1 AT2G45580 34.731 167 96 5 7 164 65 227 3.11e-25 100
MS.gene28999.t1 AT5G04330 31.461 178 110 4 1 167 203 379 3.72e-25 101
MS.gene28999.t1 AT3G20950 37.008 127 79 1 40 165 258 384 3.86e-25 101
MS.gene28999.t1 AT2G45580 34.731 167 96 5 7 164 219 381 4.71e-25 100
MS.gene28999.t1 AT5G09970 34.524 168 102 3 1 164 244 407 4.89e-25 100
MS.gene28999.t1 AT3G26200 32.911 158 101 3 4 156 205 362 5.32e-25 100
MS.gene28999.t1 AT3G20120 32.117 137 89 2 31 165 109 243 5.75e-25 99.4
MS.gene28999.t1 AT3G20120 32.117 137 89 2 31 165 109 243 5.75e-25 99.4
MS.gene28999.t1 AT3G20120 32.117 137 89 2 31 165 109 243 5.75e-25 99.4
MS.gene28999.t1 AT3G20120 31.884 138 90 2 30 165 244 379 5.78e-25 100
MS.gene28999.t1 AT2G27010 35.971 139 84 2 30 165 220 356 5.94e-25 100
MS.gene28999.t1 AT4G37340 36.196 163 93 5 7 165 214 369 6.42e-25 100
MS.gene28999.t1 AT4G12330 29.825 171 114 3 1 169 224 390 7.27e-25 100
MS.gene28999.t1 AT2G27000 34.266 143 89 2 26 165 238 378 9.27e-25 100
MS.gene28999.t1 AT4G15380 37.209 129 80 1 38 165 248 376 9.27e-25 100
MS.gene28999.t1 AT2G45580 34.731 167 96 5 7 164 219 381 1.08e-24 99.8
MS.gene28999.t1 AT3G20940 36.641 131 78 2 38 165 253 381 1.24e-24 99.8
MS.gene28999.t1 AT4G20240 34.932 146 94 1 19 164 223 367 1.64e-24 98.6
MS.gene28999.t1 AT3G20960 34.532 139 86 3 30 165 141 277 2.10e-24 98.6
MS.gene28999.t1 AT4G20240 34.932 146 94 1 19 164 223 367 2.20e-24 98.6
MS.gene28999.t1 AT3G26190 33.987 153 96 4 9 156 210 362 2.52e-24 98.6
MS.gene28999.t1 AT4G12310 32.000 175 111 4 1 169 219 391 2.93e-24 98.6
MS.gene28999.t1 AT3G20960 34.532 139 86 3 30 165 244 380 2.96e-24 98.6
MS.gene28999.t1 AT3G61040 36.810 163 91 5 7 165 214 368 3.54e-24 97.4
MS.gene28999.t1 AT3G20110 34.783 138 86 2 30 165 242 377 4.16e-24 98.2
MS.gene28999.t1 AT3G20130 33.577 137 91 0 31 167 246 382 5.04e-24 97.8
MS.gene28999.t1 AT3G20130 33.577 137 91 0 31 167 218 354 5.51e-24 97.8
MS.gene28999.t1 AT3G61040 36.810 163 91 5 7 165 214 368 7.35e-24 97.4
MS.gene28999.t1 AT3G20100 33.571 140 90 2 30 167 244 382 7.57e-24 97.4
MS.gene28999.t1 AT4G37320 33.974 156 96 3 10 165 221 369 1.19e-23 96.7
MS.gene28999.t1 AT5G35715 31.765 170 104 5 12 174 151 315 1.65e-23 96.3
MS.gene28999.t1 AT3G32047 31.915 141 95 1 24 164 239 378 1.79e-23 96.3
MS.gene28999.t1 AT4G37400 31.250 160 103 3 10 169 216 368 2.15e-23 96.3
MS.gene28999.t1 AT1G28430 33.333 138 92 0 30 167 243 380 2.76e-23 95.9
MS.gene28999.t1 AT3G20140 32.353 136 92 0 30 165 245 380 3.02e-23 95.9
MS.gene28999.t1 AT1G74110 30.233 172 107 4 1 164 242 408 4.67e-23 95.1
MS.gene28999.t1 AT2G25160 34.503 171 99 5 1 164 219 383 5.27e-23 94.7
MS.gene28999.t1 AT3G20080 34.058 138 86 2 31 165 109 244 8.79e-23 93.6
MS.gene28999.t1 AT3G20080 34.058 138 86 2 31 165 109 244 8.79e-23 93.6
MS.gene28999.t1 AT3G20080 34.058 138 86 2 31 165 109 244 8.79e-23 93.6
MS.gene28999.t1 AT3G20080 34.058 138 86 2 31 165 109 244 8.79e-23 93.6
MS.gene28999.t1 AT3G20080 33.813 139 87 2 30 165 245 381 9.70e-23 94.4
MS.gene28999.t1 AT3G20080 33.813 139 87 2 30 165 245 381 9.70e-23 94.4
MS.gene28999.t1 AT2G25160 34.302 172 100 5 1 165 219 384 9.98e-23 94.4
MS.gene28999.t1 AT3G53280 30.968 155 104 2 4 155 205 359 1.92e-22 93.6
MS.gene28999.t1 AT5G10600 30.952 168 108 4 1 164 220 383 2.61e-22 93.2
MS.gene28999.t1 AT3G26220 36.774 155 87 5 9 153 210 363 4.19e-22 92.4
MS.gene28999.t1 AT1G66540 32.121 165 106 3 1 165 39 197 4.59e-22 90.9
MS.gene28999.t1 AT1G66540 32.121 165 106 3 1 165 98 256 7.18e-22 91.3
MS.gene28999.t1 AT4G22710 30.539 167 112 3 1 165 229 393 7.78e-22 91.7
MS.gene28999.t1 AT4G22690 30.539 167 112 3 1 165 260 424 8.13e-22 91.7
MS.gene28999.t1 AT3G44250 30.573 157 102 3 4 155 206 360 1.95e-21 90.5
MS.gene28999.t1 AT2G05180 32.331 133 89 1 34 165 248 380 2.14e-21 90.1
MS.gene28999.t1 AT2G40890 31.902 163 99 4 7 165 214 368 2.15e-21 90.5
MS.gene28999.t1 AT5G57220 34.161 161 97 4 10 169 216 368 2.52e-21 90.1
MS.gene28999.t1 AT4G37430 31.250 160 103 3 10 169 221 373 7.01e-21 89.0
MS.gene28999.t1 AT2G46660 31.325 166 104 5 1 164 241 398 8.13e-21 89.0
MS.gene28999.t1 AT4G31940 32.544 169 103 5 4 164 224 389 8.97e-21 88.6
MS.gene28999.t1 AT5G10610 32.026 153 100 3 13 165 220 368 9.77e-21 88.6
MS.gene28999.t1 AT3G28740 33.974 156 96 4 10 165 229 377 9.84e-21 88.6
MS.gene28999.t1 AT4G15330 29.710 138 97 0 30 167 213 350 1.04e-20 88.6
MS.gene28999.t1 AT5G05260 32.278 158 100 4 9 162 238 392 1.08e-20 88.6
MS.gene28999.t1 AT4G15330 29.710 138 97 0 30 167 241 378 1.12e-20 88.6
MS.gene28999.t1 AT4G37330 30.625 160 107 2 6 165 211 366 2.38e-20 87.4
MS.gene28999.t1 AT4G37410 30.128 156 102 3 10 165 218 366 3.30e-20 87.0
MS.gene28999.t1 AT5G36220 36.424 151 87 3 16 165 87 229 4.50e-20 85.9
MS.gene28999.t1 AT4G37310 30.058 173 114 4 1 169 212 381 9.21e-20 85.9
MS.gene28999.t1 AT5G36220 36.424 151 87 3 16 165 233 375 1.25e-19 85.5
MS.gene28999.t1 AT2G22330 31.098 164 105 4 2 159 263 424 1.39e-19 85.5
MS.gene28999.t1 AT2G22330 31.098 164 105 4 2 159 240 401 1.43e-19 85.5
MS.gene28999.t1 AT4G31970 32.515 163 103 3 8 164 227 388 1.77e-19 85.1
MS.gene28999.t1 AT4G37360 33.758 157 96 4 10 165 220 369 2.34e-19 84.7
MS.gene28999.t1 AT4G39950 31.447 159 101 4 7 159 243 399 2.36e-19 84.7
MS.gene28999.t1 AT4G39950 31.447 159 101 4 7 159 283 439 2.53e-19 84.7
MS.gene28999.t1 AT3G25180 32.051 156 96 4 14 163 229 380 3.10e-19 84.0
MS.gene28999.t1 AT3G61880 29.697 165 108 4 1 164 241 398 3.81e-19 84.0
MS.gene28999.t1 AT3G25180 32.051 156 96 4 14 163 229 380 4.24e-19 84.0
MS.gene28999.t1 AT1G74540 34.862 109 67 1 57 165 257 361 4.34e-19 84.0
MS.gene28999.t1 AT3G61880 29.697 165 108 4 1 164 241 398 5.43e-19 83.6
MS.gene28999.t1 AT4G31950 31.953 169 104 5 4 164 212 377 6.72e-19 83.6
MS.gene28999.t1 AT1G74550 35.514 107 65 1 59 165 253 355 7.87e-19 83.2
MS.gene28999.t1 AT3G52970 37.500 176 98 7 7 174 232 403 3.06e-18 81.6
MS.gene28999.t1 AT3G52970 37.500 176 98 7 7 174 218 389 3.14e-18 81.6
MS.gene28999.t1 AT3G20935 29.870 154 86 3 34 165 53 206 3.64e-18 80.5
MS.gene28999.t1 AT3G53300 32.432 148 91 4 16 156 217 362 4.11e-18 81.3
MS.gene28999.t1 AT1G01190 29.268 164 106 3 1 164 247 400 6.76e-18 80.5
MS.gene28999.t1 AT1G01190 29.268 164 106 3 1 164 252 405 7.26e-18 80.5
MS.gene28999.t1 AT1G13710 27.976 168 112 4 1 164 225 387 1.44e-17 79.7
MS.gene28999.t1 AT4G37370 28.846 156 104 3 10 165 220 368 1.65e-17 79.3
MS.gene28999.t1 AT2G23220 29.091 165 110 3 1 165 227 384 2.20e-17 79.0
MS.gene28999.t1 AT1G58260 40.404 99 58 1 62 160 287 384 1.06e-15 74.3
MS.gene28999.t1 AT2G23190 29.448 163 108 3 1 163 256 411 2.75e-15 73.2
MS.gene28999.t1 AT1G79370 29.762 168 102 5 12 165 241 406 3.40e-15 72.8
MS.gene28999.t1 AT5G05260 33.962 106 69 1 58 162 255 360 5.94e-15 72.0
MS.gene28999.t1 AT1G16400 33.000 100 66 1 62 161 295 393 2.16e-14 70.5
MS.gene28999.t1 AT1G16410 33.000 100 66 1 62 161 296 394 3.60e-14 69.7
MS.gene28999.t1 AT1G16410 33.000 100 66 1 62 161 296 394 4.03e-14 69.7
MS.gene28999.t1 AT2G30490 31.875 160 97 6 12 165 222 375 1.82e-13 67.8
MS.gene28999.t1 AT5G35917 28.481 158 91 5 9 162 242 381 8.99e-12 62.8
MS.gene28999.t1 AT2G44890 27.778 144 92 2 29 162 236 377 2.01e-11 62.0
MS.gene28999.t1 AT5G04630 29.412 85 60 0 75 159 290 374 3.71e-11 61.2
MS.gene28999.t1 AT1G64930 35.354 99 62 2 62 159 278 375 4.08e-11 60.8
MS.gene28999.t1 AT1G64940 32.609 138 83 4 30 159 242 377 4.49e-11 60.8

Find 34 sgRNAs with CRISPR-Local

Find 48 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACATTTATTACCCTTGAT+TGG 0.285151 3.1:-62753374 MS.gene28999:CDS
AACATTTATTACCCTTGATT+GGG 0.379355 3.1:-62753373 MS.gene28999:CDS
TGAATCCTCCAAGGAGTTCC+TGG 0.394116 3.1:+62753833 None:intergenic
CTGTAATTAAAGAGATATTT+CGG 0.397197 3.1:-62753227 MS.gene28999:CDS
CAAGGCTTGCAACAAAATAA+AGG 0.398030 3.1:-62753692 MS.gene28999:CDS
TATTGCCTTGATATTATCAA+TGG 0.425403 3.1:+62753603 None:intergenic
TTGCAGGATATGTTTGCTGC+TGG 0.434283 3.1:-62753405 MS.gene28999:intron
CAACAAAATAAAGGAGCATA+AGG 0.447004 3.1:-62753683 MS.gene28999:CDS
GAATTCATACACAGCTTGAC+AGG 0.460952 3.1:-62753784 MS.gene28999:CDS
GCTCTGTCATTGCCCAATCA+AGG 0.471640 3.1:+62753361 None:intergenic
GGATTCTCTAGGACTAATAC+TGG 0.493660 3.1:+62753189 None:intergenic
CAACAACTCTTCTTTCTCGC+AGG 0.496686 3.1:+62753286 None:intergenic
TTCTAAGATAATATCTTCCA+TGG 0.502572 3.1:+62753168 None:intergenic
TTGATATTATCAATGGTAAG+AGG 0.504189 3.1:+62753610 None:intergenic
TAATATCAAGGCAATAATCC+TGG 0.528167 3.1:-62753596 MS.gene28999:intron
GATGAGTACCAGGAACTCCT+TGG 0.532404 3.1:-62753841 MS.gene28999:CDS
AGGACTAATACTGGTACTGC+AGG 0.533315 3.1:+62753198 None:intergenic
TATTAGTCCTAGAGAATCCA+TGG 0.535341 3.1:-62753185 MS.gene28999:CDS
TCTTACCATTGATAATATCA+AGG 0.540642 3.1:-62753608 MS.gene28999:CDS
CTCCTTGGAGGATTCAGCGT+TGG 0.546499 3.1:-62753826 MS.gene28999:CDS
GCTAATGAATCCTCGTGTCA+TGG 0.553441 3.1:-62753337 MS.gene28999:CDS
ATATCTTCCATGGATTCTCT+AGG 0.553522 3.1:+62753178 None:intergenic
CAAGCTGTGTATGAATTCCA+AGG 0.581970 3.1:+62753789 None:intergenic
GCATCAACTGCAGTACATGA+AGG 0.582549 3.1:-62753250 MS.gene28999:CDS
GAGTACCAGGAACTCCTTGG+AGG 0.582774 3.1:-62753838 MS.gene28999:CDS
CTCTGTCATTGCCCAATCAA+GGG 0.585761 3.1:+62753362 None:intergenic
AAAGATGCTTGATGAGTACC+AGG 0.590727 3.1:-62753851 None:intergenic
CCTCAAGTAAAATATCTACA+AGG 0.604127 3.1:+62753659 None:intergenic
CTGTGTATGAATTCCAAGGA+AGG 0.610825 3.1:+62753793 None:intergenic
CACCAACGCTGAATCCTCCA+AGG 0.630295 3.1:+62753824 None:intergenic
GAGGTACAAGAGAATGACTC+GGG 0.656963 3.1:-62753640 MS.gene28999:CDS
TCAGATAGTGAGTGAACACA+AGG 0.660766 3.1:-62753710 MS.gene28999:CDS
TGAGGTACAAGAGAATGACT+CGG 0.675658 3.1:-62753641 MS.gene28999:CDS
GGACTAATACTGGTACTGCA+GGG 0.691945 3.1:+62753199 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTGTAATTAAAGAGATATTT+CGG - chr3.1:62753790-62753809 MS.gene28999:CDS 20.0%
!! TCCTGCAAAAAAAAAAAAAA+AGG + chr3.1:62753600-62753619 None:intergenic 20.0%
!!! TCCTTTTTTTTTTTTTTTGC+AGG - chr3.1:62753596-62753615 MS.gene28999:intron 20.0%
! AAACCAATACATGGTTATTA+AGG + chr3.1:62753486-62753505 None:intergenic 25.0%
! AACATTTATTACCCTTGATT+GGG - chr3.1:62753644-62753663 MS.gene28999:CDS 25.0%
! TATTGCCTTGATATTATCAA+TGG + chr3.1:62753417-62753436 None:intergenic 25.0%
! TTGATATTATCAATGGTAAG+AGG + chr3.1:62753410-62753429 None:intergenic 25.0%
!! TCTTACCATTGATAATATCA+AGG - chr3.1:62753409-62753428 MS.gene28999:intron 25.0%
!!! CAAATTTTTTTGAAGTGTCT+TGG + chr3.1:62753274-62753293 None:intergenic 25.0%
AAGCCTTAATAACCATGTAT+TGG - chr3.1:62753480-62753499 MS.gene28999:intron 30.0%
CAACATTTATTACCCTTGAT+TGG - chr3.1:62753643-62753662 MS.gene28999:CDS 30.0%
CCTCAAGTAAAATATCTACA+AGG + chr3.1:62753361-62753380 None:intergenic 30.0%
TAATATCAAGGCAATAATCC+TGG - chr3.1:62753421-62753440 MS.gene28999:intron 30.0%
! CAACAAAATAAAGGAGCATA+AGG - chr3.1:62753334-62753353 MS.gene28999:CDS 30.0%
! CCTTGTAGATATTTTACTTG+AGG - chr3.1:62753358-62753377 MS.gene28999:CDS 30.0%
ATATCTTCCATGGATTCTCT+AGG + chr3.1:62753842-62753861 None:intergenic 35.0%
ATCACTTACCAGGGTTATTA+AGG + chr3.1:62753459-62753478 None:intergenic 35.0%
ATCTCTCAGTATGTTGAAAG+TGG - chr3.1:62753506-62753525 MS.gene28999:intron 35.0%
CAAGGCTTGCAACAAAATAA+AGG - chr3.1:62753325-62753344 MS.gene28999:CDS 35.0%
CAGTATGTTGAAAGTGGATA+AGG - chr3.1:62753512-62753531 MS.gene28999:intron 35.0%
CTGAGAGATAAACCAATACA+TGG + chr3.1:62753495-62753514 None:intergenic 35.0%
TATTAGTCCTAGAGAATCCA+TGG - chr3.1:62753832-62753851 MS.gene28999:CDS 35.0%
! TGTCATGGAAAAAGCACAAA+AGG - chr3.1:62753695-62753714 MS.gene28999:CDS 35.0%
!!! TGGTGATTTTTTTCCTTCCT+TGG - chr3.1:62753211-62753230 MS.gene28999:CDS 35.0%
CAAGCTGTGTATGAATTCCA+AGG + chr3.1:62753231-62753250 None:intergenic 40.0%
CTGTGTATGAATTCCAAGGA+AGG + chr3.1:62753227-62753246 None:intergenic 40.0%
GAATTCATACACAGCTTGAC+AGG - chr3.1:62753233-62753252 MS.gene28999:CDS 40.0%
TAAGGCTTCATCACTTACCA+GGG + chr3.1:62753441-62753460 None:intergenic 40.0%
TCAGATAGTGAGTGAACACA+AGG - chr3.1:62753307-62753326 MS.gene28999:CDS 40.0%
TGAGGTACAAGAGAATGACT+CGG - chr3.1:62753376-62753395 MS.gene28999:CDS 40.0%
TGATGAAGCCTTAATAACCC+TGG - chr3.1:62753448-62753467 MS.gene28999:intron 40.0%
TTAAGGCTTCATCACTTACC+AGG + chr3.1:62753442-62753461 None:intergenic 40.0%
!! GGATTCTCTAGGACTAATAC+TGG + chr3.1:62753831-62753850 None:intergenic 40.0%
AGGACTAATACTGGTACTGC+AGG + chr3.1:62753822-62753841 None:intergenic 45.0%
CAACAACTCTTCTTTCTCGC+AGG + chr3.1:62753734-62753753 None:intergenic 45.0%
CTCTGTCATTGCCCAATCAA+GGG + chr3.1:62753658-62753677 None:intergenic 45.0%
GAGGTACAAGAGAATGACTC+GGG - chr3.1:62753377-62753396 MS.gene28999:CDS 45.0%
GCATCAACTGCAGTACATGA+AGG - chr3.1:62753767-62753786 MS.gene28999:CDS 45.0%
GCTAATGAATCCTCGTGTCA+TGG - chr3.1:62753680-62753699 MS.gene28999:CDS 45.0%
GGACTAATACTGGTACTGCA+GGG + chr3.1:62753821-62753840 None:intergenic 45.0%
! TTGCAGGATATGTTTGCTGC+TGG - chr3.1:62753612-62753631 MS.gene28999:CDS 45.0%
!!! TGTGCTTTTTCCATGACACG+AGG + chr3.1:62753693-62753712 None:intergenic 45.0%
GATGAGTACCAGGAACTCCT+TGG - chr3.1:62753176-62753195 MS.gene28999:CDS 50.0%
GCTCTGTCATTGCCCAATCA+AGG + chr3.1:62753659-62753678 None:intergenic 50.0%
TGAATCCTCCAAGGAGTTCC+TGG + chr3.1:62753187-62753206 None:intergenic 50.0%
CACCAACGCTGAATCCTCCA+AGG + chr3.1:62753196-62753215 None:intergenic 55.0%
CTCCTTGGAGGATTCAGCGT+TGG - chr3.1:62753191-62753210 MS.gene28999:CDS 55.0%
GAGTACCAGGAACTCCTTGG+AGG - chr3.1:62753179-62753198 MS.gene28999:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 62753170 62753869 62753170 ID=MS.gene28999
chr3.1 mRNA 62753170 62753869 62753170 ID=MS.gene28999.t1;Parent=MS.gene28999
chr3.1 exon 62753597 62753869 62753597 ID=MS.gene28999.t1.exon1;Parent=MS.gene28999.t1
chr3.1 CDS 62753597 62753869 62753597 ID=cds.MS.gene28999.t1;Parent=MS.gene28999.t1
chr3.1 exon 62753170 62753421 62753170 ID=MS.gene28999.t1.exon2;Parent=MS.gene28999.t1
chr3.1 CDS 62753170 62753421 62753170 ID=cds.MS.gene28999.t1;Parent=MS.gene28999.t1
Gene Sequence

>MS.gene28999

ATGCTTGATGAGTACCAGGAACTCCTTGGAGGATTCAGCGTTGGTGATTTTTTTCCTTCCTTGGAATTCATACACAGCTTGACAGGTATGAAAGCAAGACTCCAAGACACTTCAAAAAAATTTGATCAACTCATTGATCAGATAGTGAGTGAACACAAGGCTTGCAACAAAATAAAGGAGCATAAGGACCTTGTAGATATTTTACTTGAGGTACAAGAGAATGACTCGGGTGAGATGCCTCTTACCATTGATAATATCAAGGCAATAATCCTGGTAAGTGATGAAGCCTTAATAACCCTGGTAAGTGATGAAGCCTTAATAACCATGTATTGGTTTATCTCTCAGTATGTTGAAAGTGGATAAGGCATGAGATATTATTCACTTTGCTGAATTGACTAATGACATTTTGACAATACTTTGTTTCTCTCCTTTTTTTTTTTTTTTGCAGGATATGTTTGCTGCTGGAACTGATACAACATTTATTACCCTTGATTGGGCAATGACAGAGCTGCTAATGAATCCTCGTGTCATGGAAAAAGCACAAAAGGAAGTGCGTAACATCCTGCGAGAAAGAAGAGTTGTTGCAGAGAGTGATTTGCATCAACTGCAGTACATGAAGGCTGTAATTAAAGAGATATTTCGGCTGCACCCTGCAGTACCAGTATTAGTCCTAGAGAATCCATGGAAGATATTATCTTAG

Protein sequence

>MS.gene28999.t1

MLDEYQELLGGFSVGDFFPSLEFIHSLTGMKARLQDTSKKFDQLIDQIVSEHKACNKIKEHKDLVDILLEVQENDSGEMPLTIDNIKAIILDMFAAGTDTTFITLDWAMTELLMNPRVMEKAQKEVRNILRERRVVAESDLHQLQYMKAVIKEIFRLHPAVPVLVLENPWKILS