AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29700.t1 MTR_5g083370 93.023 516 5 1 1 485 1 516 0.0 971
MS.gene29700.t1 MTR_5g073280 59.928 554 145 8 6 485 15 565 0.0 613
MS.gene29700.t1 MTR_1g059650 25.917 409 252 11 79 482 41 403 1.52e-19 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29700.t1 AT5G58440 64.865 481 120 4 48 480 101 580 0.0 625
MS.gene29700.t1 AT5G07120 58.393 560 147 7 11 485 14 572 0.0 622
MS.gene29700.t1 AT5G07120 58.393 560 147 7 11 485 14 572 0.0 622
MS.gene29700.t1 AT5G07120 58.240 534 137 7 11 459 14 546 0.0 589
MS.gene29700.t1 AT5G06140 25.167 449 265 13 31 473 9 392 7.47e-22 97.8

Find 132 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGAAGATAAGGAGTTTA+TGG 0.131203 5.3:+67570453 MS.gene29700:CDS
TGGTGTAAGGAGGAGGTTTC+GGG 0.165443 5.3:+67569585 MS.gene29700:CDS
GGCTGCCACGGCAGCTGTTT+GGG 0.165894 5.3:+67570299 MS.gene29700:CDS
GAGAAGTATCTGAGGAAATT+AGG 0.188004 5.3:+67570160 MS.gene29700:CDS
GTTGCTTCATCCAGAATATT+TGG 0.216818 5.3:+67571829 MS.gene29700:CDS
AATGAATTGAACGGTGATTT+AGG 0.226921 5.3:-67569328 None:intergenic
AGGCTGCCACGGCAGCTGTT+TGG 0.229002 5.3:+67570298 MS.gene29700:CDS
CGGCGGTTGTTGAACGTTGC+CGG 0.271445 5.3:-67569299 None:intergenic
AGCTGTTTGGGGCGGAGAGT+GGG 0.297842 5.3:+67570311 MS.gene29700:CDS
CTTGTCTCCACCAAATATTC+TGG 0.315427 5.3:-67571839 None:intergenic
CAGCTGTTTGGGGCGGAGAG+TGG 0.335447 5.3:+67570310 MS.gene29700:CDS
AACAATCTGTTAGTAATGAT+TGG 0.339972 5.3:+67570407 MS.gene29700:CDS
TACATTGTCGGAGCGGTTAT+CGG 0.341514 5.3:+67569615 MS.gene29700:CDS
TTGGTGTAAGGAGGAGGTTT+CGG 0.349103 5.3:+67569584 MS.gene29700:CDS
TATCTGATTACGACGAGAAC+TGG 0.349647 5.3:+67569550 MS.gene29700:CDS
GTAACGAACTCGCTGGTTCC+AGG 0.362396 5.3:+67569508 MS.gene29700:CDS
AGAAGTATCTGAGGAAATTA+GGG 0.377649 5.3:+67570161 MS.gene29700:CDS
AAGGAGGAGGTTTCGGGAGG+TGG 0.379579 5.3:+67569591 MS.gene29700:CDS
AAACTTTGCAGGAAAATAAT+AGG 0.382071 5.3:+67573882 MS.gene29700:intron
TTATCGTGGTTATGTGATTC+CGG 0.384264 5.3:+67569642 MS.gene29700:CDS
ACAATCTGTTAGTAATGATT+GGG 0.384603 5.3:+67570408 MS.gene29700:CDS
AACTAGCTTCTTTACATTCA+CGG 0.389779 5.3:+67571791 MS.gene29700:CDS
TTAGGGTTGCATCCTGTGAT+TGG 0.408182 5.3:+67570178 MS.gene29700:CDS
GTGACTCCATTTCATCGTCT+TGG 0.412162 5.3:-67569234 None:intergenic
GCGAGGGTTTGTTGTCAATC+AGG 0.412246 5.3:+67573958 MS.gene29700:CDS
GGAGAAGAAGGATAAGTTGA+TGG 0.424046 5.3:+67570474 MS.gene29700:CDS
TCGGGAGGTGGTTACATTGT+CGG 0.424832 5.3:+67569603 MS.gene29700:CDS
TGACTCCATTTCATCGTCTT+GGG 0.429228 5.3:-67569233 None:intergenic
GGAATTATCGCCGCCGTTGT+CGG 0.430205 5.3:-67569275 None:intergenic
TAAGGAGTTTATGGAGAAGA+AGG 0.434834 5.3:+67570462 MS.gene29700:CDS
CTCTCCACCGAACTCTTCTC+TGG 0.440093 5.3:-67569670 None:intergenic
AGAACTGGAAAATCGGAGTT+TGG 0.443673 5.3:+67569565 MS.gene29700:CDS
CGGAGTTTGGTGTAAGGAGG+AGG 0.443749 5.3:+67569578 MS.gene29700:CDS
AACGGTGATTTAGGACTTTG+CGG 0.447787 5.3:-67569319 None:intergenic
AATTCGAATCTCAAAGAGTA+AGG 0.452607 5.3:+67571435 MS.gene29700:CDS
TACACAAACAATCAAACATC+TGG 0.453598 5.3:+67571523 MS.gene29700:CDS
GATGCAGAAGGAGGAGTTTG+TGG 0.457480 5.3:+67570117 MS.gene29700:CDS
TACGACGAGAACTGGAAAAT+CGG 0.458964 5.3:+67569558 MS.gene29700:CDS
GGTGAAACAATGGGTGAGCT+AGG 0.463965 5.3:+67571368 MS.gene29700:CDS
TGGCGTCAAGGATGCTTGAT+GGG 0.464255 5.3:+67570269 MS.gene29700:CDS
AAAGTGGAAGGGATTTGCTT+AGG 0.466015 5.3:+67570368 MS.gene29700:CDS
AAGCGCGAAGAACGTGATCT+TGG 0.468626 5.3:-67569210 None:intergenic
GTGGCGTCAAGGATGCTTGA+TGG 0.468981 5.3:+67570268 MS.gene29700:CDS
TAGGGTTGCATCCTGTGATT+GGG 0.469279 5.3:+67570179 MS.gene29700:CDS
CGCTTCCCAAGACGATGAAA+TGG 0.471624 5.3:+67569228 MS.gene29700:CDS
ATTGGTTGTTGAAGAAGATA+AGG 0.471684 5.3:+67570444 MS.gene29700:CDS
GTCAGCAAAAGCATTGTTGA+TGG 0.489842 5.3:-67571728 None:intergenic
GCTGCCACGGCAGCTGTTTG+GGG 0.491006 5.3:+67570300 MS.gene29700:CDS
ACTTAGCAATGTTTCTCAGC+AGG 0.492076 5.3:+67570510 MS.gene29700:CDS
GCTGTTTGGGGCGGAGAGTG+GGG 0.492352 5.3:+67570312 MS.gene29700:CDS
TTATCTTCTTCAACAACCAA+TGG 0.498912 5.3:-67570442 None:intergenic
TTTGAATGATGTGGCTCAGC+CGG 0.506966 5.3:+67570342 MS.gene29700:CDS
GGAGCAGAGGAGATTAGCGT+TGG 0.508817 5.3:+67570138 MS.gene29700:CDS
GGCAGGCTATGCAGAGAAGA+TGG 0.512741 5.3:+67574081 MS.gene29700:intron
GAACTCTTCTCTGGCCTCAC+CGG 0.519186 5.3:-67569661 None:intergenic
GCAAGACATGGGTGAAACAA+TGG 0.520277 5.3:+67571358 MS.gene29700:CDS
GAAGAGTTCGGTGGAGAGGA+AGG 0.521077 5.3:+67569675 MS.gene29700:CDS
CTGCAGCTGTCAAAGCAAGC+AGG 0.522471 5.3:+67571483 MS.gene29700:CDS
CAAGACATGGGTGAAACAAT+GGG 0.522777 5.3:+67571359 MS.gene29700:CDS
TCCTCACTCTTCCCAATCAC+AGG 0.526809 5.3:-67570190 None:intergenic
TTGAAAGAATTGACAAGGAA+AGG 0.529294 5.3:+67573912 MS.gene29700:CDS
GATAAACTCCACGAATACCT+TGG 0.530791 5.3:+67571694 MS.gene29700:CDS
ATAAACTCCACGAATACCTT+GGG 0.530869 5.3:+67571695 MS.gene29700:CDS
GTGGCTCAGCCGGCGAAAAG+TGG 0.533089 5.3:+67570352 MS.gene29700:CDS
CTCAGCCGGCGAAAAGTGGA+AGG 0.538183 5.3:+67570356 MS.gene29700:CDS
ATGGGGCGGTGAGGCTGCCA+CGG 0.539166 5.3:+67570287 MS.gene29700:CDS
AAGATTGCTTCAGCGTAAGA+AGG 0.540494 5.3:-67569361 None:intergenic
GGTTGTTGATTTGAATGATG+TGG 0.541262 5.3:+67570333 MS.gene29700:CDS
GAAAATCGGAGTTTGGTGTA+AGG 0.545372 5.3:+67569572 MS.gene29700:CDS
TAGAGAGTATGAACGAATCA+AGG 0.545450 5.3:+67571933 MS.gene29700:CDS
TGTCAAGTTTCAGCAAGACA+TGG 0.545641 5.3:+67571346 MS.gene29700:CDS
GTTGATGAGGACGACGGATG+TGG 0.546141 5.3:+67570249 MS.gene29700:CDS
TCCGCCCCAAACAGCTGCCG+TGG 0.549263 5.3:-67570304 None:intergenic
AACGGCGGCGATAATTCCTC+CGG 0.554692 5.3:+67569280 MS.gene29700:CDS
AGGAGGAGTTTGTGGAGCAG+AGG 0.558001 5.3:+67570125 MS.gene29700:CDS
CAGAGAAGAGTTCGGTGGAG+AGG 0.558893 5.3:+67569671 MS.gene29700:CDS
GCATTGTCCCAAGGTATTCG+TGG 0.559449 5.3:-67571702 None:intergenic
GTCAAGGATGCTTGATGGGG+CGG 0.562029 5.3:+67570273 MS.gene29700:CDS
GCCACGGCAGCTGTTTGGGG+CGG 0.564908 5.3:+67570303 MS.gene29700:CDS
CTGTCAACAATGCACTTGAT+CGG 0.565466 5.3:-67571750 None:intergenic
CACGACGACGCCGACAACGG+CGG 0.577601 5.3:+67569265 MS.gene29700:CDS
AGCACTCTCAGTTACTCTAA+CGG 0.577710 5.3:-67571896 None:intergenic
GCTTCATCCAGAATATTTGG+TGG 0.579181 5.3:+67571832 MS.gene29700:CDS
GGTGAGGCCAGAGAAGAGTT+CGG 0.579558 5.3:+67569663 MS.gene29700:CDS
AAGGGAAGTTGCCGTTGATG+AGG 0.580166 5.3:+67570236 MS.gene29700:CDS
AGAGAAGATGGCTGCTGTGT+GGG 0.582156 5.3:+67574093 MS.gene29700:CDS
GTCAAGTTTCAGCAAGACAT+GGG 0.591750 5.3:+67571347 MS.gene29700:CDS
CGCCGTTGTCGGCGTCGTCG+TGG 0.591851 5.3:-67569264 None:intergenic
AATCGGAGTTTGGTGTAAGG+AGG 0.592363 5.3:+67569575 MS.gene29700:CDS
AACAATGGGTGAGCTAGGGT+TGG 0.592568 5.3:+67571373 MS.gene29700:CDS
ATTGTCGGAGCGGTTATCGG+AGG 0.593370 5.3:+67569618 MS.gene29700:CDS
TTGGGGAGGTGCTAAGCCAT+TGG 0.595216 5.3:+67570426 MS.gene29700:CDS
TGCTGTGTGGGAAAAGCTTG+CGG 0.596149 5.3:+67574105 MS.gene29700:CDS
ACTTTCAAAACATGCTGCGA+GGG 0.598205 5.3:+67573942 MS.gene29700:CDS
TTCACTTCATTCGACACCAA+CGG 0.599087 5.3:+67569382 MS.gene29700:CDS
TATTTGGTGGAGACAAGTCT+AGG 0.601151 5.3:+67571845 MS.gene29700:CDS
TGTAAGGAGGAGGTTTCGGG+AGG 0.601303 5.3:+67569588 MS.gene29700:CDS
GGATGCTTGATGGGGCGGTG+AGG 0.604410 5.3:+67570278 MS.gene29700:CDS
CGGTTGTTGAACGTTGCCGG+AGG 0.608629 5.3:-67569296 None:intergenic
CTCCACGACGACGCCGACAA+CGG 0.609403 5.3:+67569262 MS.gene29700:CDS
GGCGTCAAGGATGCTTGATG+GGG 0.610367 5.3:+67570270 MS.gene29700:CDS
ACATCCGTCGTCCTCATCAA+CGG 0.610443 5.3:-67570247 None:intergenic
ATTCGAATCTCAAAGAGTAA+GGG 0.612875 5.3:+67571436 MS.gene29700:CDS
CGGTTATCGGAGGTTTATCG+TGG 0.619246 5.3:+67569628 MS.gene29700:CDS
GGACGACGGATGTGGCGTCA+AGG 0.620316 5.3:+67570257 MS.gene29700:CDS
GTGAAACAATGGGTGAGCTA+GGG 0.620469 5.3:+67571369 MS.gene29700:CDS
GACTTTCAAAACATGCTGCG+AGG 0.622052 5.3:+67573941 MS.gene29700:CDS
GTATGATAACTACTTCCACC+TGG 0.623384 5.3:-67569526 None:intergenic
GCAAGAGGTAACGAACTCGC+TGG 0.627266 5.3:+67569501 MS.gene29700:CDS
TGATCCTCAAGAGGAGCAAG+AGG 0.633181 5.3:+67569486 MS.gene29700:intron
CTATCAGGTGATGCAGAAGG+AGG 0.634617 5.3:+67570108 MS.gene29700:intron
ATTCTATCAGGTGATGCAGA+AGG 0.635217 5.3:+67570105 MS.gene29700:intron
TGTCTTGCTGAAACTTGACA+AGG 0.636299 5.3:-67571343 None:intergenic
GAGGCCAGAGAAGAGTTCGG+TGG 0.640891 5.3:+67569666 MS.gene29700:CDS
GTCTTGCTGAAACTTGACAA+GGG 0.646463 5.3:-67571342 None:intergenic
CAATCTGTTAGTAATGATTG+GGG 0.646740 5.3:+67570409 MS.gene29700:CDS
CGTTGTCGGCGTCGTCGTGG+AGG 0.648470 5.3:-67569261 None:intergenic
GGATCGAGGAATGAATTGAA+CGG 0.649991 5.3:-67569337 None:intergenic
TCAGCCGGCGAAAAGTGGAA+GGG 0.652000 5.3:+67570357 MS.gene29700:CDS
ATTGCTTCAGCGTAAGAAGG+AGG 0.654082 5.3:-67569358 None:intergenic
TGATGGCTAGCATTGTCCCA+AGG 0.654220 5.3:-67571711 None:intergenic
TGAGCTTGAAAGAATTGACA+AGG 0.655714 5.3:+67573907 MS.gene29700:CDS
CAGCGTAAGAAGGAGGATCG+AGG 0.672129 5.3:-67569351 None:intergenic
TAGCGTTGGAGAAGTATCTG+AGG 0.672262 5.3:+67570152 MS.gene29700:CDS
CAGAGAAGATGGCTGCTGTG+TGG 0.678220 5.3:+67574092 MS.gene29700:CDS
AGGTGGTTACATTGTCGGAG+CGG 0.698989 5.3:+67569608 MS.gene29700:CDS
TCTGTTAGTAATGATTGGGG+AGG 0.700339 5.3:+67570412 MS.gene29700:CDS
ACGAACTCGCTGGTTCCAGG+TGG 0.701801 5.3:+67569511 MS.gene29700:CDS
GTGGTTATGTGATTCCGGTG+AGG 0.703172 5.3:+67569647 MS.gene29700:CDS
TCCTGTGATTGGGAAGAGTG+AGG 0.720504 5.3:+67570189 MS.gene29700:CDS
GTTGCCGTTGATGAGGACGA+CGG 0.733554 5.3:+67570243 MS.gene29700:CDS
GGTGATTTAGGACTTTGCGG+CGG 0.746382 5.3:-67569316 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGTTAATTACAATAAA+TGG - chr5.3:67570023-67570042 None:intergenic 10.0%
!! ATTTACATATTATTTCAAAA+AGG - chr5.3:67573842-67573861 None:intergenic 10.0%
!!! AAAAAGAAAAAATAGTTTTA+AGG + chr5.3:67573799-67573818 MS.gene29700:intron 10.0%
!!! AAAAATACATTTTTTGTATT+CGG + chr5.3:67571962-67571981 MS.gene29700:intron 10.0%
!! TCATCATACAATTATATAAT+TGG - chr5.3:67571594-67571613 None:intergenic 15.0%
!!! ATAGAAATACAGATTTTAAA+TGG - chr5.3:67573775-67573794 None:intergenic 15.0%
!! AATAATATCAAGTGTAAATG+TGG + chr5.3:67573859-67573878 MS.gene29700:intron 20.0%
!! ACTAAACATGATATAATAGT+CGG + chr5.3:67571118-67571137 MS.gene29700:intron 20.0%
!! CAAAATATTGATATTAAGCA+CGG - chr5.3:67570082-67570101 None:intergenic 20.0%
!! GACAATAATCTTCATAATAA+TGG - chr5.3:67572138-67572157 None:intergenic 20.0%
!! TATAGACACATGAATATATA+TGG - chr5.3:67572111-67572130 None:intergenic 20.0%
!! TATCTTAATTGCAAATTAGT+CGG + chr5.3:67569715-67569734 MS.gene29700:intron 20.0%
!! TTAATTACAATAAATGGTGT+CGG - chr5.3:67570017-67570036 None:intergenic 20.0%
!! TTATCAAAATCATCAAATAG+TGG + chr5.3:67572752-67572771 MS.gene29700:intron 20.0%
!! TTTACAAATGCATCAAAATA+TGG - chr5.3:67572491-67572510 None:intergenic 20.0%
!!! AATATTTTGCATATTCTATC+AGG + chr5.3:67570093-67570112 MS.gene29700:intron 20.0%
!!! AATCATTGGATTTTACATAT+AGG - chr5.3:67572612-67572631 None:intergenic 20.0%
!!! ACAAGATTTTAAATGATCAT+TGG - chr5.3:67571029-67571048 None:intergenic 20.0%
!!! ATCATTTAAAATCTTGTTTG+TGG + chr5.3:67571032-67571051 MS.gene29700:intron 20.0%
!!! ATTCTGGTTTTTTAAATCAT+TGG - chr5.3:67572626-67572645 None:intergenic 20.0%
!!! ATTTTACTTCTTTGATTGTT+AGG + chr5.3:67571274-67571293 MS.gene29700:intron 20.0%
!!! GTAGAATCAATTATCAATTT+TGG + chr5.3:67569926-67569945 MS.gene29700:intron 20.0%
!!! TCTTTGATAATCTAATTAGA+TGG - chr5.3:67572318-67572337 None:intergenic 20.0%
!!! TTTTACTTCTTTGATTGTTA+GGG + chr5.3:67571275-67571294 MS.gene29700:intron 20.0%
!!! TTTTATACTTGTTATGTACT+TGG - chr5.3:67572951-67572970 None:intergenic 20.0%
! AAACTTTGCAGGAAAATAAT+AGG + chr5.3:67573882-67573901 MS.gene29700:intron 25.0%
! AAATCATAAGATAGGTTCAA+AGG - chr5.3:67573663-67573682 None:intergenic 25.0%
! AACAATCTGTTAGTAATGAT+TGG + chr5.3:67570407-67570426 MS.gene29700:CDS 25.0%
! ACAATCTGTTAGTAATGATT+GGG + chr5.3:67570408-67570427 MS.gene29700:CDS 25.0%
! AGTAAAATGTAGATTCATTG+TGG + chr5.3:67570603-67570622 MS.gene29700:intron 25.0%
! ATGTGATGTTAGTTAAAAGT+AGG + chr5.3:67570783-67570802 MS.gene29700:intron 25.0%
! CCTTTATAGATGGATAAAAA+GGG - chr5.3:67573374-67573393 None:intergenic 25.0%
! CTCAATGATCAATAAAACAT+AGG - chr5.3:67572841-67572860 None:intergenic 25.0%
! CTTTATAGATGGATAAAAAG+GGG - chr5.3:67573373-67573392 None:intergenic 25.0%
! GCTTTCATAAATCATAAGAT+AGG - chr5.3:67573671-67573690 None:intergenic 25.0%
! TAAACAAAATCAGATATCAG+AGG - chr5.3:67570563-67570582 None:intergenic 25.0%
! TAGATATGCCTAAAATGATT+AGG + chr5.3:67573310-67573329 MS.gene29700:intron 25.0%
! TCAAAAATCAAAATCGCTAA+AGG - chr5.3:67573586-67573605 None:intergenic 25.0%
! TGATGCATTTAATTCAAAGT+AGG + chr5.3:67570694-67570713 MS.gene29700:intron 25.0%
! TGTGTCAAATTATCAAATAG+TGG - chr5.3:67572218-67572237 None:intergenic 25.0%
!! TAATATTTTATGTGTGTTGC+AGG + chr5.3:67571672-67571691 MS.gene29700:intron 25.0%
!! TAGGATTTTACATAATGAGA+TGG - chr5.3:67572822-67572841 None:intergenic 25.0%
!!! TCTGATTTTGTTTACGAAAA+AGG + chr5.3:67570569-67570588 MS.gene29700:intron 25.0%
!!! TTTTAACTAACATCACATTG+CGG - chr5.3:67570781-67570800 None:intergenic 25.0%
AAAGGTTCATAACCACAATA+TGG + chr5.3:67570738-67570757 MS.gene29700:intron 30.0%
AACTAATCCAAGTGTATGTT+TGG - chr5.3:67569969-67569988 None:intergenic 30.0%
AAGAAAAGAGAAGATAAACG+AGG - chr5.3:67573988-67574007 None:intergenic 30.0%
AAGGTTCATAACCACAATAT+GGG + chr5.3:67570739-67570758 MS.gene29700:intron 30.0%
AAGTTCAAGTGATTCATGTT+TGG + chr5.3:67569819-67569838 MS.gene29700:intron 30.0%
AATCTGAATCGAATCGAATT+CGG - chr5.3:67569458-67569477 None:intergenic 30.0%
AATGAATTGAACGGTGATTT+AGG - chr5.3:67569331-67569350 None:intergenic 30.0%
AATTCGAATCTCAAAGAGTA+AGG + chr5.3:67571435-67571454 MS.gene29700:CDS 30.0%
AATTGCATTGCATTATAGAG+AGG - chr5.3:67572412-67572431 None:intergenic 30.0%
ACAATTCACTAATCCAATCA+GGG + chr5.3:67572879-67572898 MS.gene29700:intron 30.0%
AGAAAAGAGAAGATAAACGA+GGG - chr5.3:67573987-67574006 None:intergenic 30.0%
AGACAGCTAAAGATTATACT+TGG - chr5.3:67571634-67571653 None:intergenic 30.0%
AGTGCTTAAAATTTCAACAC+AGG + chr5.3:67572996-67573015 MS.gene29700:intron 30.0%
ATCCAAGGTATAACTTAACA+TGG + chr5.3:67573064-67573083 MS.gene29700:intron 30.0%
ATCCATGTTAAGTTATACCT+TGG - chr5.3:67573069-67573088 None:intergenic 30.0%
ATGTTGATATGTATGCTGAA+GGG - chr5.3:67572050-67572069 None:intergenic 30.0%
ATTCGAATCTCAAAGAGTAA+GGG + chr5.3:67571436-67571455 MS.gene29700:CDS 30.0%
ATTGGTTGTTGAAGAAGATA+AGG + chr5.3:67570444-67570463 MS.gene29700:CDS 30.0%
CAATCTGTTAGTAATGATTG+GGG + chr5.3:67570409-67570428 MS.gene29700:CDS 30.0%
CATAACAAGTTCAAACTGAT+GGG - chr5.3:67573623-67573642 None:intergenic 30.0%
GCCTTTATAGATGGATAAAA+AGG - chr5.3:67573375-67573394 None:intergenic 30.0%
GTCTTTATAGACAAGTTTCA+TGG + chr5.3:67572432-67572451 MS.gene29700:intron 30.0%
TACAATTCACTAATCCAATC+AGG + chr5.3:67572878-67572897 MS.gene29700:intron 30.0%
TACACAAACAATCAAACATC+TGG + chr5.3:67571523-67571542 MS.gene29700:CDS 30.0%
TACCAGTCAAATTTATACCA+GGG - chr5.3:67572362-67572381 None:intergenic 30.0%
TATGTTGATATGTATGCTGA+AGG - chr5.3:67572051-67572070 None:intergenic 30.0%
TCATCAATCAATAGCTGATT+TGG + chr5.3:67572549-67572568 MS.gene29700:intron 30.0%
TGAAGAAGATAAGGAGTTTA+TGG + chr5.3:67570453-67570472 MS.gene29700:CDS 30.0%
TGCAAGCATACAATATAAGT+TGG + chr5.3:67572909-67572928 MS.gene29700:intron 30.0%
TTATCAAATAGTGGTAGATC+TGG - chr5.3:67572209-67572228 None:intergenic 30.0%
TTATCTTCTTCAACAACCAA+TGG - chr5.3:67570445-67570464 None:intergenic 30.0%
TTGAAAGAATTGACAAGGAA+AGG + chr5.3:67573912-67573931 MS.gene29700:CDS 30.0%
TTGTGGTGTAATCAAGTATT+AGG + chr5.3:67571049-67571068 MS.gene29700:intron 30.0%
! AACTAGCTTCTTTACATTCA+CGG + chr5.3:67571791-67571810 MS.gene29700:CDS 30.0%
! ATGGTAATGCAATTCTTCAA+AGG - chr5.3:67571208-67571227 None:intergenic 30.0%
! CCCTTTTTATCCATCTATAA+AGG + chr5.3:67573371-67573390 MS.gene29700:intron 30.0%
! CTACAAAGCCTAATCATTTT+AGG - chr5.3:67573321-67573340 None:intergenic 30.0%
! GTTTATCTTCTCTTTTCTTC+AGG + chr5.3:67573989-67574008 MS.gene29700:intron 30.0%
! TCAAAGTAGGTTTGAAGTTA+GGG + chr5.3:67570707-67570726 MS.gene29700:intron 30.0%
! TGGAACTGAATGAATTGTTT+TGG + chr5.3:67571239-67571258 MS.gene29700:intron 30.0%
! TTCAAAGTAGGTTTGAAGTT+AGG + chr5.3:67570706-67570725 MS.gene29700:intron 30.0%
!! AGAAGTATCTGAGGAAATTA+GGG + chr5.3:67570161-67570180 MS.gene29700:CDS 30.0%
!! AGTTTGAGACTTCATTTTGT+TGG - chr5.3:67573437-67573456 None:intergenic 30.0%
!! ATACAATATAAGTTGGTGAG+CGG + chr5.3:67572916-67572935 MS.gene29700:intron 30.0%
!! ATACTTGTTATGTACTTGGT+TGG - chr5.3:67572947-67572966 None:intergenic 30.0%
!! ATGAGTCTTTAACTTGATTG+TGG + chr5.3:67573276-67573295 MS.gene29700:intron 30.0%
!! GTTTGAGACTTCATTTTGTT+GGG - chr5.3:67573436-67573455 None:intergenic 30.0%
!! TCTAGTGTCATTGTGTTTTA+TGG + chr5.3:67571162-67571181 MS.gene29700:intron 30.0%
!!! CATATTTTTGCTTTTAGAGC+TGG + chr5.3:67572067-67572086 MS.gene29700:intron 30.0%
!!! CTGAATGAATTGTTTTGGAA+TGG + chr5.3:67571244-67571263 MS.gene29700:intron 30.0%
!!! GAAGTTAGGGTTTTAGAAAA+AGG + chr5.3:67570720-67570739 MS.gene29700:intron 30.0%
AAAAAAGAATTGCGTCTGCA+TGG + chr5.3:67570926-67570945 MS.gene29700:intron 35.0%
AACTTGACTTCTAAATCTGC+TGG + chr5.3:67572583-67572602 MS.gene29700:intron 35.0%
AATCGAAGTTACAGATGCTA+AGG - chr5.3:67571999-67572018 None:intergenic 35.0%
AATGGAACCAAACATACACT+TGG + chr5.3:67569959-67569978 MS.gene29700:intron 35.0%
ACTTATCCATAAGGTTATGC+AGG - chr5.3:67572288-67572307 None:intergenic 35.0%
ACTTGAATAGAATGCGAGTT+TGG + chr5.3:67573243-67573262 MS.gene29700:intron 35.0%
AGAAAACACAGACATAACCA+TGG + chr5.3:67573459-67573478 MS.gene29700:intron 35.0%
ATAAACTCCACGAATACCTT+GGG + chr5.3:67571695-67571714 MS.gene29700:CDS 35.0%
ATCGAAGTTACAGATGCTAA+GGG - chr5.3:67571998-67572017 None:intergenic 35.0%
ATGAATCAAATGGCAATGAG+GGG + chr5.3:67573531-67573550 MS.gene29700:intron 35.0%
ATTCAGATATGACCCAAGTA+TGG - chr5.3:67570984-67571003 None:intergenic 35.0%
CAATAACCTGCATAACCTTA+TGG + chr5.3:67572279-67572298 MS.gene29700:intron 35.0%
CAGCTAAAGATTATACTTGG+AGG - chr5.3:67571631-67571650 None:intergenic 35.0%
CATAACAAGTATAAAAGCCG+AGG + chr5.3:67572955-67572974 MS.gene29700:intron 35.0%
CCAAATCAGCTATTACATTC+TGG - chr5.3:67572642-67572661 None:intergenic 35.0%
CCAGAATGTAATAGCTGATT+TGG + chr5.3:67572639-67572658 MS.gene29700:intron 35.0%
CGCATTCTATTCAAGTCTAT+AGG - chr5.3:67573239-67573258 None:intergenic 35.0%
CTACCAGTCAAATTTATACC+AGG - chr5.3:67572363-67572382 None:intergenic 35.0%
CTTGAATAGAATGCGAGTTT+GGG + chr5.3:67573244-67573263 MS.gene29700:intron 35.0%
GAGATATCAAACCCATATTG+TGG - chr5.3:67570753-67570772 None:intergenic 35.0%
GATGAATCAAATGGCAATGA+GGG + chr5.3:67573530-67573549 MS.gene29700:intron 35.0%
GCATAACAAGTTCAAACTGA+TGG - chr5.3:67573624-67573643 None:intergenic 35.0%
GTTAAAAGTAGGACTCATTG+TGG + chr5.3:67570794-67570813 MS.gene29700:intron 35.0%
GTTGCTTCATCCAGAATATT+TGG + chr5.3:67571829-67571848 MS.gene29700:CDS 35.0%
TAAGGAGTTTATGGAGAAGA+AGG + chr5.3:67570462-67570481 MS.gene29700:CDS 35.0%
TCAACTAGACGAAAGAGAAA+AGG - chr5.3:67571090-67571109 None:intergenic 35.0%
TCATCAAATAGTGGTAGATC+TGG + chr5.3:67572761-67572780 MS.gene29700:intron 35.0%
TCCTAACCTCAAATTAACTG+TGG - chr5.3:67570901-67570920 None:intergenic 35.0%
TGAGCTTGAAAGAATTGACA+AGG + chr5.3:67573907-67573926 MS.gene29700:CDS 35.0%
TGATGAATCAAATGGCAATG+AGG + chr5.3:67573529-67573548 MS.gene29700:intron 35.0%
TGTAAATGTGGAAACTTTGC+AGG + chr5.3:67573871-67573890 MS.gene29700:intron 35.0%
TGTTGATATGTATGCTGAAG+GGG - chr5.3:67572049-67572068 None:intergenic 35.0%
TTATCGTGGTTATGTGATTC+CGG + chr5.3:67569642-67569661 MS.gene29700:CDS 35.0%
TTGAATAGAATGCGAGTTTG+GGG + chr5.3:67573245-67573264 MS.gene29700:intron 35.0%
! AATTGATTCTACTCGAAGCT+AGG - chr5.3:67569918-67569937 None:intergenic 35.0%
! ATGTTTGGTTCCATTTCTAG+AGG - chr5.3:67569954-67569973 None:intergenic 35.0%
! TAGAGAGTATGAACGAATCA+AGG + chr5.3:67571933-67571952 MS.gene29700:CDS 35.0%
! TCCACAGTTAATTTGAGGTT+AGG + chr5.3:67570897-67570916 MS.gene29700:intron 35.0%
! TGTTTGGTTCCATTTCTAGA+GGG - chr5.3:67569953-67569972 None:intergenic 35.0%
! TTAGCTCCACAGTTAATTTG+AGG + chr5.3:67570892-67570911 MS.gene29700:intron 35.0%
! TTCATTTTGTTGGGAGCTAT+GGG - chr5.3:67573427-67573446 None:intergenic 35.0%
!! GAGAAGTATCTGAGGAAATT+AGG + chr5.3:67570160-67570179 MS.gene29700:CDS 35.0%
!! GGATTTGCTTAGGATTTTCA+AGG + chr5.3:67570378-67570397 MS.gene29700:CDS 35.0%
!! GGTTGTTGATTTGAATGATG+TGG + chr5.3:67570333-67570352 MS.gene29700:CDS 35.0%
!!! ATGCAGACGCAATTCTTTTT+TGG - chr5.3:67570927-67570946 None:intergenic 35.0%
!!! CATTACCATTTTTTGTCACG+TGG + chr5.3:67571219-67571238 MS.gene29700:intron 35.0%
AAGATTGCTTCAGCGTAAGA+AGG - chr5.3:67569364-67569383 None:intergenic 40.0%
ACCATACATGAGATAGTGAG+TGG + chr5.3:67573038-67573057 MS.gene29700:intron 40.0%
ACTAATCCAATCAGGGTTGA+TGG + chr5.3:67572886-67572905 MS.gene29700:intron 40.0%
ACTGCAATGTGACCATACTT+GGG + chr5.3:67570969-67570988 MS.gene29700:intron 40.0%
ACTTAGCAATGTTTCTCAGC+AGG + chr5.3:67570510-67570529 MS.gene29700:CDS 40.0%
ACTTCCTAACATGCACTAAG+AGG - chr5.3:67570653-67570672 None:intergenic 40.0%
ACTTTCAAAACATGCTGCGA+GGG + chr5.3:67573942-67573961 MS.gene29700:CDS 40.0%
AGAACTGGAAAATCGGAGTT+TGG + chr5.3:67569565-67569584 MS.gene29700:CDS 40.0%
AGCAACACGATAGTTATCCT+CGG - chr5.3:67572975-67572994 None:intergenic 40.0%
AGCACTCTCAGTTACTCTAA+CGG - chr5.3:67571899-67571918 None:intergenic 40.0%
ATCTGACCATCTCATATCCA+TGG + chr5.3:67573109-67573128 MS.gene29700:intron 40.0%
ATGGATATGAGATGGTCAGA+TGG - chr5.3:67573110-67573129 None:intergenic 40.0%
ATTCTATCAGGTGATGCAGA+AGG + chr5.3:67570105-67570124 MS.gene29700:intron 40.0%
ATTTCCAAACCCACACTAAG+AGG - chr5.3:67570844-67570863 None:intergenic 40.0%
CAAAAAGGACTTCAGTGCAT+TGG - chr5.3:67573827-67573846 None:intergenic 40.0%
CAAAATCGCTAAAGGCCAAA+GGG - chr5.3:67573578-67573597 None:intergenic 40.0%
CAACTTCAAATTGTGATGCC+AGG + chr5.3:67573697-67573716 MS.gene29700:intron 40.0%
CAAGACATGGGTGAAACAAT+GGG + chr5.3:67571359-67571378 MS.gene29700:CDS 40.0%
CACCCTGGTATAAATTTGAC+TGG + chr5.3:67572357-67572376 MS.gene29700:intron 40.0%
CAGTTCCACGTGACAAAAAA+TGG - chr5.3:67571227-67571246 None:intergenic 40.0%
CATCCAGCTGATGAATCAAA+TGG + chr5.3:67573521-67573540 MS.gene29700:intron 40.0%
CATTTGATTCATCAGCTGGA+TGG - chr5.3:67573523-67573542 None:intergenic 40.0%
CTAGAAAACTCGAATCAAGC+CGG + chr5.3:67569418-67569437 MS.gene29700:intron 40.0%
CTAGACGAAAGAGAAAAGGT+TGG - chr5.3:67571086-67571105 None:intergenic 40.0%
CTGTCAACAATGCACTTGAT+CGG - chr5.3:67571753-67571772 None:intergenic 40.0%
CTTGTCTCCACCAAATATTC+TGG - chr5.3:67571842-67571861 None:intergenic 40.0%
GATAAACTCCACGAATACCT+TGG + chr5.3:67571694-67571713 MS.gene29700:CDS 40.0%
GATCAGAACTAGAAATAGCC+AGG - chr5.3:67574026-67574045 None:intergenic 40.0%
GCTTCATCCAGAATATTTGG+TGG + chr5.3:67571832-67571851 MS.gene29700:CDS 40.0%
GGATCGAGGAATGAATTGAA+CGG - chr5.3:67569340-67569359 None:intergenic 40.0%
GGGAATGTTAGATGCATCTA+TGG - chr5.3:67573353-67573372 None:intergenic 40.0%
GTATGATAACTACTTCCACC+TGG - chr5.3:67569529-67569548 None:intergenic 40.0%
GTCAAGTTTCAGCAAGACAT+GGG + chr5.3:67571347-67571366 MS.gene29700:CDS 40.0%
GTCTTGCTGAAACTTGACAA+GGG - chr5.3:67571345-67571364 None:intergenic 40.0%
TACGACGAGAACTGGAAAAT+CGG + chr5.3:67569558-67569577 MS.gene29700:CDS 40.0%
TATCTGATTACGACGAGAAC+TGG + chr5.3:67569550-67569569 MS.gene29700:CDS 40.0%
TCAAAATCGCTAAAGGCCAA+AGG - chr5.3:67573579-67573598 None:intergenic 40.0%
TCAAGTCTATAGGAGTCTAC+TGG - chr5.3:67573229-67573248 None:intergenic 40.0%
TCCACTCACTATCTCATGTA+TGG - chr5.3:67573042-67573061 None:intergenic 40.0%
TCTGTTAGTAATGATTGGGG+AGG + chr5.3:67570412-67570431 MS.gene29700:CDS 40.0%
TGACTCCATTTCATCGTCTT+GGG - chr5.3:67569236-67569255 None:intergenic 40.0%
TGTCAAGTTTCAGCAAGACA+TGG + chr5.3:67571346-67571365 MS.gene29700:CDS 40.0%
TGTCTTGCTGAAACTTGACA+AGG - chr5.3:67571346-67571365 None:intergenic 40.0%
TGTTCCATTGAGAGCTTCAT+TGG + chr5.3:67572723-67572742 MS.gene29700:intron 40.0%
TTCAAATTGTGATGCCAGGT+TGG + chr5.3:67573701-67573720 MS.gene29700:intron 40.0%
TTCACTTCATTCGACACCAA+CGG + chr5.3:67569382-67569401 MS.gene29700:CDS 40.0%
! AAAGTGGAAGGGATTTGCTT+AGG + chr5.3:67570368-67570387 MS.gene29700:CDS 40.0%
! AACGGTGATTTAGGACTTTG+CGG - chr5.3:67569322-67569341 None:intergenic 40.0%
! AACTGATGGGCAAAATCACA+AGG - chr5.3:67573610-67573629 None:intergenic 40.0%
! AAGGGGAAGCACAAATTTAC+AGG - chr5.3:67572032-67572051 None:intergenic 40.0%
! CATCTGCATTTACTTGTTGC+AGG + chr5.3:67571313-67571332 MS.gene29700:intron 40.0%
! CTCTACATCACGTGTTTTAC+AGG + chr5.3:67574060-67574079 MS.gene29700:intron 40.0%
! CTTCATTTTGTTGGGAGCTA+TGG - chr5.3:67573428-67573447 None:intergenic 40.0%
! GGAGAAGAAGGATAAGTTGA+TGG + chr5.3:67570474-67570493 MS.gene29700:CDS 40.0%
! GTTTGGTTCCATTTCTAGAG+GGG - chr5.3:67569952-67569971 None:intergenic 40.0%
! TATTTGGTGGAGACAAGTCT+AGG + chr5.3:67571845-67571864 MS.gene29700:CDS 40.0%
! TCGTTTGCTGCCTTTATAGA+TGG - chr5.3:67573384-67573403 None:intergenic 40.0%
! TTAGTGTCATTCAAACACCC+TGG + chr5.3:67572342-67572361 MS.gene29700:intron 40.0%
! TTGCCATTTGATTCATCAGC+TGG - chr5.3:67573527-67573546 None:intergenic 40.0%
!! AATTTTGGCCCCTCTAGAAA+TGG + chr5.3:67569941-67569960 MS.gene29700:intron 40.0%
!! AGAGTGTTTTTGCAGGTTCA+AGG + chr5.3:67570217-67570236 MS.gene29700:CDS 40.0%
!! GAAAATCGGAGTTTGGTGTA+AGG + chr5.3:67569572-67569591 MS.gene29700:CDS 40.0%
!! GAGTGTTTTTGCAGGTTCAA+GGG + chr5.3:67570218-67570237 MS.gene29700:CDS 40.0%
!! GGCACTGATACTTATCCATA+AGG - chr5.3:67572297-67572316 None:intergenic 40.0%
!! GGCTTGATTCGAGTTTTCTA+GGG - chr5.3:67569419-67569438 None:intergenic 40.0%
!! GTCAGCAAAAGCATTGTTGA+TGG - chr5.3:67571731-67571750 None:intergenic 40.0%
AAAGAGAACTACACCACCCT+AGG - chr5.3:67573727-67573746 None:intergenic 45.0%
AAAGGCCAAAGGGTGAAATG+TGG - chr5.3:67573568-67573587 None:intergenic 45.0%
AAGCACGGAAGAGAGAAAAG+TGG - chr5.3:67570067-67570086 None:intergenic 45.0%
ACATGCACTAAGAGGACACA+AGG - chr5.3:67570645-67570664 None:intergenic 45.0%
ACGTCCAATGAAGCTCTCAA+TGG - chr5.3:67572730-67572749 None:intergenic 45.0%
ATAGAATGCGAGTTTGGGGA+CGG + chr5.3:67573249-67573268 MS.gene29700:intron 45.0%
ATCCACCACATTTCACCCTT+TGG + chr5.3:67573560-67573579 MS.gene29700:intron 45.0%
ATTGCTTCAGCGTAAGAAGG+AGG - chr5.3:67569361-67569380 None:intergenic 45.0%
CATAACCATGGTTGCAAGTC+TGG + chr5.3:67573471-67573490 MS.gene29700:intron 45.0%
CATCAGCTGGATGGTCTATT+GGG - chr5.3:67573514-67573533 None:intergenic 45.0%
CATGCACTAAGAGGACACAA+GGG - chr5.3:67570644-67570663 None:intergenic 45.0%
CTCCTCTTGAGGATCAGAAA+CGG - chr5.3:67569482-67569501 None:intergenic 45.0%
CTTCAGGCTGTTATGTTACC+TGG + chr5.3:67574005-67574024 MS.gene29700:intron 45.0%
GACTGCAATGTGACCATACT+TGG + chr5.3:67570968-67570987 MS.gene29700:intron 45.0%
GACTTTCAAAACATGCTGCG+AGG + chr5.3:67573941-67573960 MS.gene29700:CDS 45.0%
GCAAGACATGGGTGAAACAA+TGG + chr5.3:67571358-67571377 MS.gene29700:CDS 45.0%
GTGAAACAATGGGTGAGCTA+GGG + chr5.3:67571369-67571388 MS.gene29700:CDS 45.0%
GTGACTCCATTTCATCGTCT+TGG - chr5.3:67569237-67569256 None:intergenic 45.0%
GTGTCCTCTTAGTGCATGTT+AGG + chr5.3:67570646-67570665 MS.gene29700:intron 45.0%
TACATTGTCGGAGCGGTTAT+CGG + chr5.3:67569615-67569634 MS.gene29700:CDS 45.0%
TAGGGTTGCATCCTGTGATT+GGG + chr5.3:67570179-67570198 MS.gene29700:CDS 45.0%
TAGGGTTTGATCATGACCGT+TGG - chr5.3:67569401-67569420 None:intergenic 45.0%
TCATCAGCTGGATGGTCTAT+TGG - chr5.3:67573515-67573534 None:intergenic 45.0%
TCGAGTTAACTCAGAATCGC+AGG + chr5.3:67573142-67573161 MS.gene29700:intron 45.0%
TCGCAGGAGTTTATCACTCT+AGG + chr5.3:67573158-67573177 MS.gene29700:intron 45.0%
TCTTTCCAGACTTGCAACCA+TGG - chr5.3:67573479-67573498 None:intergenic 45.0%
TTAGGGTTGCATCCTGTGAT+TGG + chr5.3:67570178-67570197 MS.gene29700:CDS 45.0%
TTCCGTTTCTGATCCTCAAG+AGG + chr5.3:67569477-67569496 MS.gene29700:intron 45.0%
TTGCAGCCATGGATATGAGA+TGG - chr5.3:67573118-67573137 None:intergenic 45.0%
TTGGTGTAAGGAGGAGGTTT+CGG + chr5.3:67569584-67569603 MS.gene29700:CDS 45.0%
TTTGAATGATGTGGCTCAGC+CGG + chr5.3:67570342-67570361 MS.gene29700:CDS 45.0%
! AACTCGAGATTTTGCAGCCA+TGG - chr5.3:67573129-67573148 None:intergenic 45.0%
! ACATCACGTGTTTTACAGGC+AGG + chr5.3:67574064-67574083 MS.gene29700:intron 45.0%
! GATAGTGAGTGGAGTATCCA+AGG + chr5.3:67573049-67573068 MS.gene29700:intron 45.0%
!! AAATCCCTTCCACTTTTCGC+CGG - chr5.3:67570364-67570383 None:intergenic 45.0%
!! AAGGGTGAAATGTGGTGGAT+TGG - chr5.3:67573560-67573579 None:intergenic 45.0%
!! AATCGGAGTTTGGTGTAAGG+AGG + chr5.3:67569575-67569594 MS.gene29700:CDS 45.0%
!! AGGGTGAAATGTGGTGGATT+GGG - chr5.3:67573559-67573578 None:intergenic 45.0%
!! CGGCTTGATTCGAGTTTTCT+AGG - chr5.3:67569420-67569439 None:intergenic 45.0%
!! TAGCGTTGGAGAAGTATCTG+AGG + chr5.3:67570152-67570171 MS.gene29700:CDS 45.0%
!!! GGAGTTGAGAGTGTTTTTGC+AGG + chr5.3:67570210-67570229 MS.gene29700:CDS 45.0%
AACAATGGGTGAGCTAGGGT+TGG + chr5.3:67571373-67571392 MS.gene29700:CDS 50.0%
AACTCGAATCAAGCCGGATC+CGG + chr5.3:67569424-67569443 MS.gene29700:intron 50.0%
AAGCGCGAAGAACGTGATCT+TGG - chr5.3:67569213-67569232 None:intergenic 50.0%
AAGGGAAGTTGCCGTTGATG+AGG + chr5.3:67570236-67570255 MS.gene29700:CDS 50.0%
ACATCCGTCGTCCTCATCAA+CGG - chr5.3:67570250-67570269 None:intergenic 50.0%
ACCCACACTAAGAGGACACA+AGG - chr5.3:67570836-67570855 None:intergenic 50.0%
AGAGAAGATGGCTGCTGTGT+GGG + chr5.3:67574093-67574112 MS.gene29700:CDS 50.0%
AGGTGGTTACATTGTCGGAG+CGG + chr5.3:67569608-67569627 MS.gene29700:CDS 50.0%
ATCGAATTCGGTTCCCGATC+CGG - chr5.3:67569446-67569465 None:intergenic 50.0%
CCCACACTAAGAGGACACAA+GGG - chr5.3:67570835-67570854 None:intergenic 50.0%
CCCTTGTGTCCTCTTAGTGT+GGG + chr5.3:67570832-67570851 MS.gene29700:intron 50.0%
CGCTTCCCAAGACGATGAAA+TGG + chr5.3:67569228-67569247 MS.gene29700:CDS 50.0%
CGGTTATCGGAGGTTTATCG+TGG + chr5.3:67569628-67569647 MS.gene29700:CDS 50.0%
CTATCAGGTGATGCAGAAGG+AGG + chr5.3:67570108-67570127 MS.gene29700:intron 50.0%
CTTGCACCATCAACCCTGAT+TGG - chr5.3:67572895-67572914 None:intergenic 50.0%
GATGCAGAAGGAGGAGTTTG+TGG + chr5.3:67570117-67570136 MS.gene29700:CDS 50.0%
GGTGAAACAATGGGTGAGCT+AGG + chr5.3:67571368-67571387 MS.gene29700:CDS 50.0%
GTATGGTCACATTGCAGTCG+CGG - chr5.3:67570967-67570986 None:intergenic 50.0%
GTGGTTATGTGATTCCGGTG+AGG + chr5.3:67569647-67569666 MS.gene29700:CDS 50.0%
GTGTCCTCTTAGTGTGGGTT+TGG + chr5.3:67570837-67570856 MS.gene29700:intron 50.0%
GTTACCTCTTGCTCCTCTTG+AGG - chr5.3:67569493-67569512 None:intergenic 50.0%
TCCTCACTCTTCCCAATCAC+AGG - chr5.3:67570193-67570212 None:intergenic 50.0%
TCCTGTGATTGGGAAGAGTG+AGG + chr5.3:67570189-67570208 MS.gene29700:CDS 50.0%
TCGGGAGGTGGTTACATTGT+CGG + chr5.3:67569603-67569622 MS.gene29700:CDS 50.0%
TGATCCTCAAGAGGAGCAAG+AGG + chr5.3:67569486-67569505 MS.gene29700:intron 50.0%
TGATGGCTAGCATTGTCCCA+AGG - chr5.3:67571714-67571733 None:intergenic 50.0%
TGCTGTGTGGGAAAAGCTTG+CGG + chr5.3:67574105-67574124 MS.gene29700:CDS 50.0%
TGGCGTCAAGGATGCTTGAT+GGG + chr5.3:67570269-67570288 MS.gene29700:CDS 50.0%
TGGTGTAAGGAGGAGGTTTC+GGG + chr5.3:67569585-67569604 MS.gene29700:CDS 50.0%
! GCATTGTCCCAAGGTATTCG+TGG - chr5.3:67571705-67571724 None:intergenic 50.0%
! GGTGATTTAGGACTTTGCGG+CGG - chr5.3:67569319-67569338 None:intergenic 50.0%
!! GCGAGGGTTTGTTGTCAATC+AGG + chr5.3:67573958-67573977 MS.gene29700:CDS 50.0%
AACGGCGGCGATAATTCCTC+CGG + chr5.3:67569280-67569299 MS.gene29700:CDS 55.0%
AATCAAGCCGGATCCGGATC+GGG + chr5.3:67569430-67569449 MS.gene29700:intron 55.0%
AGGAGGAGTTTGTGGAGCAG+AGG + chr5.3:67570125-67570144 MS.gene29700:CDS 55.0%
ATTGTCGGAGCGGTTATCGG+AGG + chr5.3:67569618-67569637 MS.gene29700:CDS 55.0%
CAGAGAAGATGGCTGCTGTG+TGG + chr5.3:67574092-67574111 MS.gene29700:CDS 55.0%
CAGCGTAAGAAGGAGGATCG+AGG - chr5.3:67569354-67569373 None:intergenic 55.0%
CTCTCCACCGAACTCTTCTC+TGG - chr5.3:67569673-67569692 None:intergenic 55.0%
CTGCAGCTGTCAAAGCAAGC+AGG + chr5.3:67571483-67571502 MS.gene29700:CDS 55.0%
GAACTCTTCTCTGGCCTCAC+CGG - chr5.3:67569664-67569683 None:intergenic 55.0%
GAATCAAGCCGGATCCGGAT+CGG + chr5.3:67569429-67569448 MS.gene29700:intron 55.0%
GCAAGAGGTAACGAACTCGC+TGG + chr5.3:67569501-67569520 MS.gene29700:CDS 55.0%
GCCCTTGTGTCCTCTTAGTG+TGG + chr5.3:67570640-67570659 MS.gene29700:intron 55.0%
GGAATTATCGCCGCCGTTGT+CGG - chr5.3:67569278-67569297 None:intergenic 55.0%
GGAGCAGAGGAGATTAGCGT+TGG + chr5.3:67570138-67570157 MS.gene29700:CDS 55.0%
GGCAGGCTATGCAGAGAAGA+TGG + chr5.3:67574081-67574100 MS.gene29700:intron 55.0%
GGCCAAAGGGTGAAATGTGG+TGG - chr5.3:67573565-67573584 None:intergenic 55.0%
GGCGTCAAGGATGCTTGATG+GGG + chr5.3:67570270-67570289 MS.gene29700:CDS 55.0%
GGTGAGGCCAGAGAAGAGTT+CGG + chr5.3:67569663-67569682 MS.gene29700:CDS 55.0%
GTCAAGGATGCTTGATGGGG+CGG + chr5.3:67570273-67570292 MS.gene29700:CDS 55.0%
GTGGCGTCAAGGATGCTTGA+TGG + chr5.3:67570268-67570287 MS.gene29700:CDS 55.0%
TCAGCCGGCGAAAAGTGGAA+GGG + chr5.3:67570357-67570376 MS.gene29700:CDS 55.0%
TGTAAGGAGGAGGTTTCGGG+AGG + chr5.3:67569588-67569607 MS.gene29700:CDS 55.0%
! CAGAGAAGAGTTCGGTGGAG+AGG + chr5.3:67569671-67569690 MS.gene29700:CDS 55.0%
! GAAGAGTTCGGTGGAGAGGA+AGG + chr5.3:67569675-67569694 MS.gene29700:CDS 55.0%
! GTTGATGAGGACGACGGATG+TGG + chr5.3:67570249-67570268 MS.gene29700:CDS 55.0%
! GTTGCCGTTGATGAGGACGA+CGG + chr5.3:67570243-67570262 MS.gene29700:CDS 55.0%
!! CGGAGTTTGGTGTAAGGAGG+AGG + chr5.3:67569578-67569597 MS.gene29700:CDS 55.0%
!! GTAACGAACTCGCTGGTTCC+AGG + chr5.3:67569508-67569527 MS.gene29700:CDS 55.0%
!! TGTGATGCCAGGTTGGCCTA+GGG + chr5.3:67573708-67573727 MS.gene29700:intron 55.0%
!! TTGGGGAGGTGCTAAGCCAT+TGG + chr5.3:67570426-67570445 MS.gene29700:CDS 55.0%
!! TTGTGATGCCAGGTTGGCCT+AGG + chr5.3:67573707-67573726 MS.gene29700:intron 55.0%
AAGGAGGAGGTTTCGGGAGG+TGG + chr5.3:67569591-67569610 MS.gene29700:CDS 60.0%
CGGCGGTTGTTGAACGTTGC+CGG - chr5.3:67569302-67569321 None:intergenic 60.0%
CGGTTGTTGAACGTTGCCGG+AGG - chr5.3:67569299-67569318 None:intergenic 60.0%
CTCAGCCGGCGAAAAGTGGA+AGG + chr5.3:67570356-67570375 MS.gene29700:CDS 60.0%
GAGGCCAGAGAAGAGTTCGG+TGG + chr5.3:67569666-67569685 MS.gene29700:CDS 60.0%
TACACCACCCTAGGCCAACC+TGG - chr5.3:67573718-67573737 None:intergenic 60.0%
TTCGGTTCCCGATCCGGATC+CGG - chr5.3:67569440-67569459 None:intergenic 60.0%
! AGCTGTTTGGGGCGGAGAGT+GGG + chr5.3:67570311-67570330 MS.gene29700:CDS 60.0%
!! ACGAACTCGCTGGTTCCAGG+TGG + chr5.3:67569511-67569530 MS.gene29700:CDS 60.0%
AGGCTGCCACGGCAGCTGTT+TGG + chr5.3:67570298-67570317 MS.gene29700:CDS 65.0%
CTCCACGACGACGCCGACAA+CGG + chr5.3:67569262-67569281 MS.gene29700:CDS 65.0%
GCTGCCACGGCAGCTGTTTG+GGG + chr5.3:67570300-67570319 MS.gene29700:CDS 65.0%
GGACGACGGATGTGGCGTCA+AGG + chr5.3:67570257-67570276 MS.gene29700:CDS 65.0%
GGATGCTTGATGGGGCGGTG+AGG + chr5.3:67570278-67570297 MS.gene29700:CDS 65.0%
GGCTGCCACGGCAGCTGTTT+GGG + chr5.3:67570299-67570318 MS.gene29700:CDS 65.0%
GTGGCTCAGCCGGCGAAAAG+TGG + chr5.3:67570352-67570371 MS.gene29700:CDS 65.0%
! CAGCTGTTTGGGGCGGAGAG+TGG + chr5.3:67570310-67570329 MS.gene29700:CDS 65.0%
! GCTGTTTGGGGCGGAGAGTG+GGG + chr5.3:67570312-67570331 MS.gene29700:CDS 65.0%
!! GATGCCAGGTTGGCCTAGGG+TGG + chr5.3:67573711-67573730 MS.gene29700:intron 65.0%
ATGGGGCGGTGAGGCTGCCA+CGG + chr5.3:67570287-67570306 MS.gene29700:CDS 70.0%
CACGACGACGCCGACAACGG+CGG + chr5.3:67569265-67569284 MS.gene29700:CDS 70.0%
CGTTGTCGGCGTCGTCGTGG+AGG - chr5.3:67569264-67569283 None:intergenic 70.0%
GCCACGGCAGCTGTTTGGGG+CGG + chr5.3:67570303-67570322 MS.gene29700:CDS 70.0%
TCCGCCCCAAACAGCTGCCG+TGG - chr5.3:67570307-67570326 None:intergenic 70.0%
CGCCGTTGTCGGCGTCGTCG+TGG - chr5.3:67569267-67569286 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 67569202 67574162 67569202 ID=MS.gene29700
chr5.3 mRNA 67569202 67574162 67569202 ID=MS.gene29700.t1;Parent=MS.gene29700
chr5.3 exon 67569202 67569403 67569202 ID=MS.gene29700.t1.exon1;Parent=MS.gene29700.t1
chr5.3 CDS 67569202 67569403 67569202 ID=cds.MS.gene29700.t1;Parent=MS.gene29700.t1
chr5.3 exon 67569497 67569696 67569497 ID=MS.gene29700.t1.exon2;Parent=MS.gene29700.t1
chr5.3 CDS 67569497 67569696 67569497 ID=cds.MS.gene29700.t1;Parent=MS.gene29700.t1
chr5.3 exon 67570115 67570531 67570115 ID=MS.gene29700.t1.exon3;Parent=MS.gene29700.t1
chr5.3 CDS 67570115 67570531 67570115 ID=cds.MS.gene29700.t1;Parent=MS.gene29700.t1
chr5.3 exon 67571335 67571544 67571335 ID=MS.gene29700.t1.exon4;Parent=MS.gene29700.t1
chr5.3 CDS 67571335 67571544 67571335 ID=cds.MS.gene29700.t1;Parent=MS.gene29700.t1
chr5.3 exon 67571694 67571954 67571694 ID=MS.gene29700.t1.exon5;Parent=MS.gene29700.t1
chr5.3 CDS 67571694 67571954 67571694 ID=cds.MS.gene29700.t1;Parent=MS.gene29700.t1
chr5.3 exon 67573893 67573979 67573893 ID=MS.gene29700.t1.exon6;Parent=MS.gene29700.t1
chr5.3 CDS 67573893 67573979 67573893 ID=cds.MS.gene29700.t1;Parent=MS.gene29700.t1
chr5.3 exon 67574082 67574162 67574082 ID=MS.gene29700.t1.exon7;Parent=MS.gene29700.t1
chr5.3 CDS 67574082 67574162 67574082 ID=cds.MS.gene29700.t1;Parent=MS.gene29700.t1
Gene Sequence

>MS.gene29700

ATGATGAACCAAGATCACGTTCTTCGCGCTTCCCAAGACGATGAAATGGAGTCACTAGTCCTCCACGACGACGCCGACAACGGCGGCGATAATTCCTCCGGCAACGTTCAACAACCGCCGCAAAGTCCTAAATCACCGTTCAATTCATTCCTCGATCCTCCTTCTTACGCTGAAGCAATCTTCACTTCATTCGACACCAACGGTCATGATCAAACCCTAGAAAACTCGAATCAAGCCGGATCCGGATCGGGAACCGAATTCGATTCGATTCAGATTTCCGTTTCTGATCCTCAAGAGGAGCAAGAGGTAACGAACTCGCTGGTTCCAGGTGGAAGTAGTTATCATACGTATCTGATTACGACGAGAACTGGAAAATCGGAGTTTGGTGTAAGGAGGAGGTTTCGGGAGGTGGTTACATTGTCGGAGCGGTTATCGGAGGTTTATCGTGGTTATGTGATTCCGGTGAGGCCAGAGAAGAGTTCGGTGGAGAGGAAGGTAATGTTAGAATTAGTTTATCTTAATTGCAAATTAGTCGGTGTATGTTTGATTCTGCAATGACACGAATTGATTTTGTGTAAATTGATTATGTAAAATTGATTCTAACTAAAAGTTAGTTGAAGTTCAAGTGATTCATGTTTGGATACATTCATGTAGAAGTAAGTTGAAATCTAAATTTATGTTAAAAATCAATTCTAGAATAAAAAACTATAAATCCTAGCTTCGAGTAGAATCAATTATCAATTTTGGCCCCTCTAGAAATGGAACCAAACATACACTTGGATTAGTTTCTAGTTGATTGTAATAAAGTTCATCCGACACCATTTATTGTAATTAACAATTTTTTTTAAAATAAATTTTACTTCCACTTTTCTCTCTTCCGTGCTTAATATCAATATTTTGCATATTCTATCAGGTGATGCAGAAGGAGGAGTTTGTGGAGCAGAGGAGATTAGCGTTGGAGAAGTATCTGAGGAAATTAGGGTTGCATCCTGTGATTGGGAAGAGTGAGGAGTTGAGAGTGTTTTTGCAGGTTCAAGGGAAGTTGCCGTTGATGAGGACGACGGATGTGGCGTCAAGGATGCTTGATGGGGCGGTGAGGCTGCCACGGCAGCTGTTTGGGGCGGAGAGTGGGGTTGTTGATTTGAATGATGTGGCTCAGCCGGCGAAAAGTGGAAGGGATTTGCTTAGGATTTTCAAGGAGTTGAAACAATCTGTTAGTAATGATTGGGGAGGTGCTAAGCCATTGGTTGTTGAAGAAGATAAGGAGTTTATGGAGAAGAAGGATAAGTTGATGGAGTTTGAACAACAACTTAGCAATGTTTCTCAGCAGGTAGTGATAATGTGATATCTGATTAGTTCCTCTGATATCTGATTTTGTTTACGAAAAAGGAACTTGATGTTAGTAAAATGTAGATTCATTGTGGATATATTCTAGATAGCCCTTGTGTCCTCTTAGTGCATGTTAGGAAGTTCATTGAAGACATCTCAAGCATGATGCATTTAATTCAAAGTAGGTTTGAAGTTAGGGTTTTAGAAAAAGGTTCATAACCACAATATGGGTTTGATATCTCAGTGACCGCAATGTGATGTTAGTTAAAAGTAGGACTCATTGTGGATATATTCTAGATAGCCCTTGTGTCCTCTTAGTGTGGGTTTGGAAATTCATTTAAAATATCTCAAGCATGATGCATTAGCTCCACAGTTAATTTGAGGTTAGGATTTCCAAAAAAGAATTGCGTCTGCATGGTTTTTATTAATATCTCCGCGACTGCAATGTGACCATACTTGGGTCATATCTGAATTTTAACGTGACTCTCTTCGATACCAATGATCATTTAAAATCTTGTTTGTGGTGTAATCAAGTATTAGGTCGCAGCATTTCCAACCTTTTCTCTTTCGTCTAGTTGAGTTTCTTTACTAAACATGATATAATAGTCGGTTGATTGAAAAACATAATTGTTCTAGTGTCATTGTGTTTTATGGACTATTATTTAAACTACTCTCCTTTGAAGAATTGCATTACCATTTTTTGTCACGTGGAACTGAATGAATTGTTTTGGAATGGTGTTGATATTTTACTTCTTTGATTGTTAGGGTTGATTTTGTTTGTTCATCTGCATTTACTTGTTGCAGGCTGAATCCCTTGTCAAGTTTCAGCAAGACATGGGTGAAACAATGGGTGAGCTAGGGTTGGCTTTTGTGAAACTTACTAAATTTGAGACAGAAGAAGCTGAATTCGAATCTCAAAGAGTAAGGGCTGCTGACATGAAAAATGTAGCAACTGCAGCTGTCAAAGCAAGCAGGTTATATAGAGAGCTGAATACACAAACAATCAAACATCTGGTTAGTGCAGATTCTAATTACTTATCATTATGAGAGAATTTTTTTTCCAATTATATAATTGTATGATGAAAACTATGTGTTAACCTCCAAGTATAATCTTTAGCTGTCTTTTTCTGTTGTTGATGAGTAATATTTTATGTGTGTTGCAGGATAAACTCCACGAATACCTTGGGACAATGCTAGCCATCAACAATGCTTTTGCTGACCGATCAAGTGCATTGTTGACAGTTCAAACACTTTCATCAGAACTAGCTTCTTTACATTCACGGATTGAGAAGCTCGAAGTTGCTTCATCCAGAATATTTGGTGGAGACAAGTCTAGGATGCGAAAAATTGAAGAATTGAAAGAAGCCGTTAGAGTAACTGAGAGTGCTAAAATTTGTGCAGATAGAGAGTATGAACGAATCAAGGTAACATAAAAATACATTTTTTGTATTCGGATTCACGTCTCCCTTAGCATCTGTAACTTCGATTTCACTGTATTCCTGTAAATTTGTGCTTCCCCTTCAGCATACATATCAACATATTTTTGCTTTTAGAGCTGGCTTTCTGTTTTTTCTTTGCCATATATATTCATGTGTCTATATTTGCCATTATTATGAAGATTATTGTCTTTGTTAGCTTTCATTTCACAAGTACAGTTAAATTTCTAAATCAGTGACCAGATCTACCACTATTTGATAATTTGACACACTAGAACTCGATGACTTCAGCTTGTAATGTTGACTAAACTTCAATAACCTGCATAACCTTATGGATAAGTATCAGTGCCATCTAATTAGATTATCAAAGAAATATTAGTGTCATTCAAACACCCTGGTATAAATTTGACTGGTAGTGATTATGTTTTCACATGATTTTCTTCCTCTCTATAATGCAATGCAATTGTCTTTATAGACAAGTTTCATGGTGAAAGACAAAAAGAACTACAATATTGTCAAAACCATATTTTGATGCATTTGTAAAAGTTTTGTTGTGCGCTGCATTGAATGCTTTCATCAAAATCATCAATCAATAGCTGATTTGGTCACACATGTAAACTTGACTTCTAAATCTGCTGGCATCCTATATGTAAAATCCAATGATTTAAAAAACCAGAATGTAATAGCTGATTTGGTCACATATGTAAACTTGACTTCTAATTGAATTTTATTTTCATACTTTGATGCATTTATAAATGTTCCATTGAGAGCTTCATTGGACGTTTTTATCAAAATCATCAAATAGTGGTAGATCTGGTCACTGATTTAGAAATTTAAATTCTAAATCTATTTCCATCTCATTATGTAAAATCCTATGTTTTATTGATCATTGAGTTAGTAGAGAACTAGTCTACAATTCACTAATCCAATCAGGGTTGATGGTGCAAGCATACAATATAAGTTGGTGAGCGGAATATCCAACCAAGTACATAACAAGTATAAAAGCCGAGGATAACTATCGTGTTGCTTAGTGCTTAAAATTTCAACACAGGATAGTTAGTGATAGTATAAACCATACATGAGATAGTGAGTGGAGTATCCAAGGTATAACTTAACATGGATAAAAGTGAACAGAGAAAGCCATCTGACCATCTCATATCCATGGCTGCAAAATCTCGAGTTAACTCAGAATCGCAGGAGTTTATCACTCTAGGCATCAAAATTGAGTTCACTAACATAAAATAATTTTTCTCTAAACTCCAGTAGACTCCTATAGACTTGAATAGAATGCGAGTTTGGGGACGGTTAAATGAGTCTTTAACTTGATTGTGGCTATTTTCTACTAGATATGCCTAAAATGATTAGGCTTTGTAGCACTTAACTCCATAGATGCATCTAACATTCCCCTTTTTATCCATCTATAAAGGCAGCAAACGATGTTTCTTTTGAGTTTCAATCCCATAGCTCCCAACAAAATGAAGTCTCAAACTATAGAAAACACAGACATAACCATGGTTGCAAGTCTGGAAAGAGTCTGCAAAGAACCCAATAGACCATCCAGCTGATGAATCAAATGGCAATGAGGGGAACCCAATCCACCACATTTCACCCTTTGGCCTTTAGCGATTTTGATTTTTGAGCCTTGTGATTTTGCCCATCAGTTTGAACTTGTTATGCTCTTTTTATATTCTGTCCTTTGAACCTATCTTATGATTTATGAAAGCTTCTATCAACTTCAAATTGTGATGCCAGGTTGGCCTAGGGTGGTGTAGTTCTCTTTATTTTGTCTGTTATTCAATCTCATGCCATTTAAAATCTGTATTTCTATTAAAAAAAAGAAAAAATAGTTTTAAGGAACCAATGCACTGAAGTCCTTTTTGAAATAATATGTAAATAATATCAAGTGTAAATGTGGAAACTTTGCAGGAAAATAATAGGAGTGAGCTTGAAAGAATTGACAAGGAAAGGCAAAGTGACTTTCAAAACATGCTGCGAGGGTTTGTTGTCAATCAGGTAACCCTCGTTTATCTTCTCTTTTCTTCAGGCTGTTATGTTACCTGGCTATTTCTAGTTCTGATCTGAACAGTAATATACTCTACATCACGTGTTTTACAGGCAGGCTATGCAGAGAAGATGGCTGCTGTGTGGGAAAAGCTTGCGGAAGAAACATCTACGTACTCAAGTGACAGCAGCTAG

Protein sequence

>MS.gene29700.t1

MMNQDHVLRASQDDEMESLVLHDDADNGGDNSSGNVQQPPQSPKSPFNSFLDPPSYAEAIFTSFDTNEEQEVTNSLVPGGSSYHTYLITTRTGKSEFGVRRRFREVVTLSERLSEVYRGYVIPVRPEKSSVERKVMQKEEFVEQRRLALEKYLRKLGLHPVIGKSEELRVFLQVQGKLPLMRTTDVASRMLDGAVRLPRQLFGAESGVVDLNDVAQPAKSGRDLLRIFKELKQSVSNDWGGAKPLVVEEDKEFMEKKDKLMEFEQQLSNVSQQAESLVKFQQDMGETMGELGLAFVKLTKFETEEAEFESQRVRAADMKNVATAAVKASRLYRELNTQTIKHLDKLHEYLGTMLAINNAFADRSSALLTVQTLSSELASLHSRIEKLEVASSRIFGGDKSRMRKIEELKEAVRVTESAKICADREYERIKENNRSELERIDKERQSDFQNMLRGFVVNQAGYAEKMAAVWEKLAEETSTYSSDSS