AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36392

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36392.t1 MTR_2g100410 97.931 145 3 0 12 156 1 145 2.88e-102 290
MS.gene36392.t1 MTR_8g015570 89.510 143 15 0 12 154 1 143 1.96e-92 265
MS.gene36392.t1 MTR_8g015570 90.476 105 10 0 12 116 1 105 6.60e-68 201
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36392.t1 AT4G29410 70.629 143 42 0 12 154 1 143 9.76e-72 212
MS.gene36392.t1 AT4G29410 70.629 143 42 0 12 154 1 143 9.76e-72 212
MS.gene36392.t1 AT2G19730 71.329 143 41 0 12 154 1 143 5.45e-71 210
MS.gene36392.t1 AT2G19730 71.329 143 41 0 12 154 1 143 5.45e-71 210
MS.gene36392.t1 AT2G19730 71.329 143 41 0 12 154 1 143 5.45e-71 210

Find 34 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAGATTGTAAAGATTATT+AGG 0.236572 2.2:+2727559 None:intergenic
CAAGGTTGAGTGCTGTTAAT+AGG 0.286054 2.2:-2724853 MS.gene36392:CDS
CAGTACCTGGACCACTTGTT+TGG 0.329181 2.2:-2727660 MS.gene36392:CDS
AGCCTCCGAGTTGCAAAGTC+TGG 0.420492 2.2:-2724830 MS.gene36392:CDS
AGTACCTGGACCACTTGTTT+GGG 0.420976 2.2:-2727659 MS.gene36392:CDS
GGCTAAGGCTGTGCAAAATC+AGG 0.425465 2.2:-2726834 MS.gene36392:intron
CCTGCACAAAGATAACTTGA+TGG 0.454263 2.2:-2728590 MS.gene36392:CDS
CTGTTATGAAGAAAGAGTTC+AGG 0.475739 2.2:-2726862 MS.gene36392:CDS
CAAAGATCAGTCTGTGTTGT+TGG 0.477149 2.2:-2726936 MS.gene36392:CDS
CCATCAAGTTATCTTTGTGC+AGG 0.482619 2.2:+2728590 None:intergenic
ACTGTAACTATTCAGTCTGC+TGG 0.486689 2.2:-2726959 MS.gene36392:CDS
CTGGCGCTAAGAAGAGAAAC+AGG 0.489005 2.2:-2724811 MS.gene36392:CDS
GTGCAGGCGGGTCCCACGCA+TGG 0.501417 2.2:+2728606 None:intergenic
CAAGTTATCTTTGTGCAGGC+GGG 0.512370 2.2:+2728594 None:intergenic
CTTAACTCTTACAAATACTC+TGG 0.515746 2.2:-2727541 MS.gene36392:intron
GTCTGATTTATTCCATGCGT+GGG 0.522002 2.2:-2728618 None:intergenic
AGAGCCACCTTCTTAAGATC+AGG 0.525699 2.2:+2724878 None:intergenic
AAAGATAACTTGATGGCAGC+AGG 0.528048 2.2:-2728583 MS.gene36392:intron
GATTTGTGAAGCAAAGCAGC+AGG 0.534387 2.2:+2726884 None:intergenic
AAGAAGAGAAACAGGCATGC+AGG 0.536717 2.2:-2724803 MS.gene36392:CDS
AGAGTTCAGGAGGATGGCTA+AGG 0.539424 2.2:-2726849 MS.gene36392:CDS
ATCTCCCAAACAAGTGGTCC+AGG 0.541178 2.2:+2727655 None:intergenic
TCAAGTTATCTTTGTGCAGG+CGG 0.554177 2.2:+2728593 None:intergenic
TTAAGAAGGTGGCTCTTGCA+AGG 0.561746 2.2:-2724871 MS.gene36392:CDS
CTACAGACCTGATCTTAAGA+AGG 0.561878 2.2:-2724885 MS.gene36392:CDS
AGTCTGATTTATTCCATGCG+TGG 0.563761 2.2:-2728619 None:intergenic
TTCACGATCTCCCAAACAAG+TGG 0.590177 2.2:+2727649 None:intergenic
TAGCGCCAGACTTTGCAACT+CGG 0.593837 2.2:+2724825 None:intergenic
GAAGAAAGAGTTCAGGAGGA+TGG 0.603864 2.2:-2726855 MS.gene36392:CDS
CGCCAGACTTTGCAACTCGG+AGG 0.606941 2.2:+2724828 None:intergenic
TGTTGGCAACCACCAAGCCA+AGG 0.638986 2.2:-2726919 MS.gene36392:CDS
TTATGAAGAAAGAGTTCAGG+AGG 0.639998 2.2:-2726859 MS.gene36392:CDS
CAGACCTGATCTTAAGAAGG+TGG 0.645097 2.2:-2724882 MS.gene36392:CDS
TTGTTTGGGAGATCGTGAAG+AGG 0.651216 2.2:-2727645 MS.gene36392:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATTAAAAAAAAAAA+TGG - chr2.2:2725352-2725371 MS.gene36392:intron 0.0%
!! ATTAAATAGTAATATATCAA+TGG - chr2.2:2724879-2724898 MS.gene36392:CDS 10.0%
!! ATTTCTAATTCAAAATAATT+TGG + chr2.2:2726807-2726826 None:intergenic 10.0%
!!! ATAATAGTTTTATGATTAAT+GGG - chr2.2:2725909-2725928 MS.gene36392:intron 10.0%
!!! ATATTACTATTTAATTTGAA+CGG + chr2.2:2724874-2724893 None:intergenic 10.0%
!!! TATAATAGTTTTATGATTAA+TGG - chr2.2:2725908-2725927 MS.gene36392:intron 10.0%
!!! TTAATTGAAATCATTTTAAA+CGG - chr2.2:2727247-2727266 MS.gene36392:intron 10.0%
!!! TTTTTTTCTTCTTTTTTTAA+GGG + chr2.2:2725273-2725292 None:intergenic 10.0%
!!! TTTTTTTTCTTCTTTTTTTA+AGG + chr2.2:2725274-2725293 None:intergenic 10.0%
!! AAACAAATAGATAATTTGAA+TGG + chr2.2:2727229-2727248 None:intergenic 15.0%
!! AACAAACAAAAAAAATTGAA+TGG + chr2.2:2725206-2725225 None:intergenic 15.0%
!! AACAAATAGATAATTTGAAT+GGG + chr2.2:2727228-2727247 None:intergenic 15.0%
!! AACTTGAATTAAAAAAATCA+AGG + chr2.2:2728259-2728278 None:intergenic 15.0%
!! TAGTTCAAAAATAAAACATT+TGG - chr2.2:2726899-2726918 MS.gene36392:CDS 15.0%
!! TTAAGATTGTAAAGATTATT+AGG + chr2.2:2725844-2725863 None:intergenic 15.0%
!!! AAAATAATTTTGTACCTATA+TGG - chr2.2:2727855-2727874 MS.gene36392:intron 15.0%
!!! GTAGCAATTTTAATTTTTTT+TGG - chr2.2:2726361-2726380 MS.gene36392:intron 15.0%
!!! TGTTTTTATTATGGTATAAT+AGG - chr2.2:2726402-2726421 MS.gene36392:intron 15.0%
!!! TTTATTTACATAAAAGCATT+TGG - chr2.2:2726932-2726951 MS.gene36392:CDS 15.0%
!! AAATTATGAAGAGATCAAAA+GGG + chr2.2:2728002-2728021 None:intergenic 20.0%
!! ACAAAATGACTTAGATAAAA+AGG + chr2.2:2727454-2727473 None:intergenic 20.0%
!! ACAATAAAGAAGAGATAAAA+AGG + chr2.2:2727762-2727781 None:intergenic 20.0%
!! ATAAAAAGGTTAGATTCATT+AGG + chr2.2:2727748-2727767 None:intergenic 20.0%
!! ATCACATTTGATTAAAACTT+AGG + chr2.2:2726251-2726270 None:intergenic 20.0%
!! GATTTATAGCAAAATGAAAT+TGG + chr2.2:2725520-2725539 None:intergenic 20.0%
!! TAAATTATGAAGAGATCAAA+AGG + chr2.2:2728003-2728022 None:intergenic 20.0%
!! TTAGAAATATTCACGATAAT+TGG - chr2.2:2726819-2726838 MS.gene36392:intron 20.0%
!! TTATTATGGTATAATAGGTT+TGG - chr2.2:2726407-2726426 MS.gene36392:intron 20.0%
!! TTTGCATCTTAAAGTATAAT+GGG - chr2.2:2726009-2726028 MS.gene36392:intron 20.0%
!!! AAACTGTTTTGAATTATAAG+AGG + chr2.2:2727724-2727743 None:intergenic 20.0%
!!! AAATTGAATGGTTCAAATTT+TGG + chr2.2:2725194-2725213 None:intergenic 20.0%
!!! AATTTATGTTATTTGTCTGA+GGG - chr2.2:2728017-2728036 MS.gene36392:intron 20.0%
!!! ACCATTCTAAAATAATTTGT+TGG + chr2.2:2728342-2728361 None:intergenic 20.0%
!!! AGTTGAAAATTGTTTTGAAT+TGG - chr2.2:2726775-2726794 MS.gene36392:intron 20.0%
!!! ATGTTTTTTTTATTCTGTGA+TGG - chr2.2:2725943-2725962 MS.gene36392:intron 20.0%
!!! CAATTTTTTTTGTTTGTTCA+AGG - chr2.2:2725208-2725227 MS.gene36392:intron 20.0%
!!! CCATTCTAAAATAATTTGTT+GGG + chr2.2:2728341-2728360 None:intergenic 20.0%
!!! CTTACTTCATGTTTTTATTA+TGG - chr2.2:2726393-2726412 MS.gene36392:intron 20.0%
!!! GATATTTGTACTATCTTTTT+GGG + chr2.2:2724983-2725002 None:intergenic 20.0%
!!! GTTTTATTTTTGAACTAATC+CGG + chr2.2:2726896-2726915 None:intergenic 20.0%
!!! TAATTTATGTTATTTGTCTG+AGG - chr2.2:2728016-2728035 MS.gene36392:intron 20.0%
!!! TGATATTTGTACTATCTTTT+TGG + chr2.2:2724984-2725003 None:intergenic 20.0%
! AAAATTCGAACAAAGAAAGA+GGG + chr2.2:2727008-2727027 None:intergenic 25.0%
! AGGAAAGACATTAAAGATAT+TGG - chr2.2:2725228-2725247 MS.gene36392:intron 25.0%
! ATTCATATAGTTGTCATTCT+AGG - chr2.2:2726714-2726733 MS.gene36392:intron 25.0%
! ATTTACACAGATAAATCACA+TGG + chr2.2:2727532-2727551 None:intergenic 25.0%
! CTTTGCATCTTAAAGTATAA+TGG - chr2.2:2726008-2726027 MS.gene36392:intron 25.0%
! GGATTCTTCTTATATGTTAA+CGG + chr2.2:2727898-2727917 None:intergenic 25.0%
! TAAATGCAAAATAGCATATG+AGG + chr2.2:2728071-2728090 None:intergenic 25.0%
! TAAGCATTTATTATACTGCT+TGG + chr2.2:2726204-2726223 None:intergenic 25.0%
! TCAAATTAGCTCATAGATTA+AGG + chr2.2:2728455-2728474 None:intergenic 25.0%
! TCTGTATTGTATTGTGTTAT+AGG - chr2.2:2725668-2725687 MS.gene36392:intron 25.0%
! TGAAATATTATTGTTACGCT+TGG - chr2.2:2727085-2727104 MS.gene36392:intron 25.0%
!! AATAGTTACAGTTTTCTTGT+TGG + chr2.2:2726433-2726452 None:intergenic 25.0%
!! ATTTATGTTATTTGTCTGAG+GGG - chr2.2:2728018-2728037 MS.gene36392:intron 25.0%
!! GTTTTCATGTTTCACAATAT+TGG - chr2.2:2726679-2726698 MS.gene36392:intron 25.0%
!!! AAGTTTTTATTTAGAGAAGC+TGG - chr2.2:2728274-2728293 MS.gene36392:intron 25.0%
!!! AGTTTTAAGTTACAAAAGAG+AGG + chr2.2:2727190-2727209 None:intergenic 25.0%
!!! CCCAACAAATTATTTTAGAA+TGG - chr2.2:2728338-2728357 MS.gene36392:intron 25.0%
!!! GAAAATTGTTTTGAATTGGT+TGG - chr2.2:2726779-2726798 MS.gene36392:intron 25.0%
!!! TCTTTTTTGGTTAAAGAGTT+TGG - chr2.2:2725784-2725803 MS.gene36392:intron 25.0%
!!! TTTGATTTTCAGATCAGATT+TGG - chr2.2:2725633-2725652 MS.gene36392:intron 25.0%
!!! TTTTGTCATTGTGCTTTTTA+GGG - chr2.2:2725605-2725624 MS.gene36392:intron 25.0%
AAATTCGAACAAAGAAAGAG+GGG + chr2.2:2727007-2727026 None:intergenic 30.0%
AGATAAATCACATGGCAATT+AGG + chr2.2:2727524-2727543 None:intergenic 30.0%
ATAAAACATTTGGAAACGTG+TGG - chr2.2:2726909-2726928 MS.gene36392:CDS 30.0%
ATAATTTGAATGGGAACGTA+AGG + chr2.2:2727219-2727238 None:intergenic 30.0%
ATATAAGAAGAATCCCTATG+TGG - chr2.2:2727903-2727922 MS.gene36392:intron 30.0%
ATATAAGATGAATCCCTATG+TGG - chr2.2:2727615-2727634 MS.gene36392:CDS 30.0%
ATGACAAAACGAAAATACCT+TGG + chr2.2:2725594-2725613 None:intergenic 30.0%
ATTTACACAGATAAATCGCA+TGG + chr2.2:2727834-2727853 None:intergenic 30.0%
CTTAACTCTTACAAATACTC+TGG - chr2.2:2725859-2725878 MS.gene36392:intron 30.0%
CTTGTTGAAATTAGTGAAGT+TGG - chr2.2:2726285-2726304 MS.gene36392:intron 30.0%
GAAAATTCGAACAAAGAAAG+AGG + chr2.2:2727009-2727028 None:intergenic 30.0%
GGATTCATCTTATATGTTAG+AGG + chr2.2:2727610-2727629 None:intergenic 30.0%
TAATTTGAATGGGAACGTAA+GGG + chr2.2:2727218-2727237 None:intergenic 30.0%
TATAAGAAGAATCCCTATGT+GGG - chr2.2:2727904-2727923 MS.gene36392:intron 30.0%
TATAAGATGAATCCCTATGT+GGG - chr2.2:2727616-2727635 MS.gene36392:CDS 30.0%
TCCAAATCCAAAGCAAATTA+GGG - chr2.2:2725491-2725510 MS.gene36392:intron 30.0%
TTGAATTATAAGAGGTCACT+AGG + chr2.2:2727716-2727735 None:intergenic 30.0%
! AGTCATTTGCTGCAAAATAA+AGG + chr2.2:2728305-2728324 None:intergenic 30.0%
! TGAAATTTACTTGTTACGCT+TGG - chr2.2:2727648-2727667 MS.gene36392:CDS 30.0%
!! ACTATTTAATTTGAACGGTC+AGG + chr2.2:2724869-2724888 None:intergenic 30.0%
!! ATTTGTACTATCTTTTTGGG+TGG + chr2.2:2724980-2724999 None:intergenic 30.0%
!! GTTTTGTCATTGTGCTTTTT+AGG - chr2.2:2725604-2725623 MS.gene36392:intron 30.0%
!!! TTTGTACTATCTTTTTGGGT+GGG + chr2.2:2724979-2724998 None:intergenic 30.0%
ACCAGATCACCAGAAAAAAA+AGG + chr2.2:2727498-2727517 None:intergenic 35.0%
ATCTAGTCAAATCTACTGCT+AGG - chr2.2:2726745-2726764 MS.gene36392:intron 35.0%
CACTGAATAAACCCAACAAA+TGG + chr2.2:2727067-2727086 None:intergenic 35.0%
CATGTTAATGGAAATACTGC+CGG - chr2.2:2726874-2726893 MS.gene36392:CDS 35.0%
CCAGATCACCAGAAAAAAAA+GGG + chr2.2:2727497-2727516 None:intergenic 35.0%
CTATGAAACCATCATACACA+TGG + chr2.2:2726342-2726361 None:intergenic 35.0%
CTGTTATGAAGAAAGAGTTC+AGG - chr2.2:2726538-2726557 MS.gene36392:intron 35.0%
GAAGAAGAAGAAGAAGAAGA+TGG - chr2.2:2725693-2725712 MS.gene36392:intron 35.0%
GAGTGAGATTTGAGAAGAAT+AGG + chr2.2:2725557-2725576 None:intergenic 35.0%
GCATTCAATCATATTAGCAG+TGG + chr2.2:2728125-2728144 None:intergenic 35.0%
GTAAGAAGGATCCATTTGTT+GGG - chr2.2:2727053-2727072 MS.gene36392:intron 35.0%
GTCCAAATCCAAAGCAAATT+AGG - chr2.2:2725490-2725509 MS.gene36392:intron 35.0%
GTTGGAAAATTCTGCTAAGT+TGG - chr2.2:2726654-2726673 MS.gene36392:intron 35.0%
TAAATCGCATGGTAGCAATT+AGG + chr2.2:2727823-2727842 None:intergenic 35.0%
TATGATTGAATGCTTCCCAT+CGG - chr2.2:2728132-2728151 MS.gene36392:intron 35.0%
TCATTGAAGAAACCCACATA+GGG + chr2.2:2727631-2727650 None:intergenic 35.0%
TCCACACAAAGAACAAGAAT+CGG + chr2.2:2726627-2726646 None:intergenic 35.0%
TGTTAATGCCATGTGTATGA+TGG - chr2.2:2726331-2726350 MS.gene36392:intron 35.0%
TGTTCTTTGTGTGGAATTAG+TGG - chr2.2:2726632-2726651 MS.gene36392:intron 35.0%
TTATGAAGAAAGAGTTCAGG+AGG - chr2.2:2726541-2726560 MS.gene36392:intron 35.0%
TTCAATCATATTAGCAGTGG+TGG + chr2.2:2728122-2728141 None:intergenic 35.0%
TTCATTGAAGAAACCCACAT+AGG + chr2.2:2727632-2727651 None:intergenic 35.0%
! AACCTGGTCTCTATTTTATC+TGG - chr2.2:2727785-2727804 MS.gene36392:intron 35.0%
! AATACCTTGGATTGTTGTTG+AGG + chr2.2:2725581-2725600 None:intergenic 35.0%
! GTTGTTTCAGTGCATGTTAA+TGG - chr2.2:2726862-2726881 MS.gene36392:CDS 35.0%
! TGAAATTTACTTGCTACGCT+TGG - chr2.2:2727340-2727359 MS.gene36392:intron 35.0%
!! ACCCTAATTTGCTTTGGATT+TGG + chr2.2:2725495-2725514 None:intergenic 35.0%
!! ATAATTTGTTGGGCAGCATT+TGG + chr2.2:2728331-2728350 None:intergenic 35.0%
!! GCTTTTGAGCTTTGATCATT+CGG - chr2.2:2727362-2727381 MS.gene36392:intron 35.0%
!! TAATTTGTTGGGCAGCATTT+GGG + chr2.2:2728330-2728349 None:intergenic 35.0%
!! TTGGAAACCCTAATTTGCTT+TGG + chr2.2:2725501-2725520 None:intergenic 35.0%
!! TTTTGTTTATTGTGCGAACC+TGG - chr2.2:2727468-2727487 MS.gene36392:intron 35.0%
!!! ATGGCTGTTTTTGTTGTTGA+AGG - chr2.2:2725962-2725981 MS.gene36392:intron 35.0%
!!! GAAGAGGAACAACTCTTTTT+TGG - chr2.2:2725771-2725790 MS.gene36392:intron 35.0%
!!! TGGCTGTTTTTGTTGTTGAA+GGG - chr2.2:2725963-2725982 MS.gene36392:intron 35.0%
!!! TTGTACTATCTTTTTGGGTG+GGG + chr2.2:2724978-2724997 None:intergenic 35.0%
AACACGTAAGAAGGTTCCTT+TGG - chr2.2:2728167-2728186 MS.gene36392:intron 40.0%
ACGTAAGAAGAATCCTATGC+GGG - chr2.2:2727308-2727327 MS.gene36392:intron 40.0%
ACTGTAACTATTCAGTCTGC+TGG - chr2.2:2726441-2726460 MS.gene36392:intron 40.0%
ATTCAACTAGTGTTACCCAG+CGG - chr2.2:2727270-2727289 MS.gene36392:intron 40.0%
CAAACACATATAGCCCACTA+AGG + chr2.2:2725453-2725472 None:intergenic 40.0%
CAAAGATCAGTCTGTGTTGT+TGG - chr2.2:2726464-2726483 MS.gene36392:intron 40.0%
CACCAGATAAAATAGAGACC+AGG + chr2.2:2727790-2727809 None:intergenic 40.0%
CACGTAAGAAGAATCCTATG+CGG - chr2.2:2727307-2727326 MS.gene36392:intron 40.0%
CCACACAAAGAACAAGAATC+GGG + chr2.2:2726626-2726645 None:intergenic 40.0%
CCATCAAGTTATCTTTGTGC+AGG + chr2.2:2724813-2724832 None:intergenic 40.0%
CCTGCACAAAGATAACTTGA+TGG - chr2.2:2724810-2724829 MS.gene36392:CDS 40.0%
CGTAAGAAGGATCCATTTGT+TGG - chr2.2:2727052-2727071 MS.gene36392:intron 40.0%
CTACAGACCTGATCTTAAGA+AGG - chr2.2:2728515-2728534 MS.gene36392:intron 40.0%
CTTTGTGTGGAATTAGTGGT+TGG - chr2.2:2726636-2726655 MS.gene36392:intron 40.0%
TAGTAGTTATCTGCAACCTG+AGG + chr2.2:2728498-2728517 None:intergenic 40.0%
TCAAGTTATCTTTGTGCAGG+CGG + chr2.2:2724810-2724829 None:intergenic 40.0%
TCATTGAAGAAACCCACCAA+AGG + chr2.2:2728186-2728205 None:intergenic 40.0%
TCTTCTTTATTGTGCGAACC+TGG - chr2.2:2727769-2727788 MS.gene36392:intron 40.0%
TGAGCTGTTAACACGTAAGA+AGG - chr2.2:2728158-2728177 MS.gene36392:intron 40.0%
TGTTGTTGAAGGGTTCTGTT+TGG - chr2.2:2725973-2725992 MS.gene36392:intron 40.0%
! AAAGAGAGGCACGCTATTAA+CGG + chr2.2:2727176-2727195 None:intergenic 40.0%
! AAAGATAACTTGATGGCAGC+AGG - chr2.2:2724817-2724836 MS.gene36392:CDS 40.0%
! CAAGGTTGAGTGCTGTTAAT+AGG - chr2.2:2728547-2728566 MS.gene36392:intron 40.0%
!! TAAAAGCATTTGGAAACGCG+TGG - chr2.2:2726942-2726961 MS.gene36392:CDS 40.0%
!!! CCCTTTTTTTTCTGGTGATC+TGG - chr2.2:2727494-2727513 MS.gene36392:intron 40.0%
AAGAAGAGAAACAGGCATGC+AGG - chr2.2:2728597-2728616 MS.gene36392:CDS 45.0%
AAGAAGATGGCAACAGTACC+TGG - chr2.2:2725727-2725746 MS.gene36392:intron 45.0%
ACACCAAATCTAACTGGCAG+AGG + chr2.2:2727570-2727589 None:intergenic 45.0%
ACGTAAGAAGGTTCCTTTGG+TGG - chr2.2:2728170-2728189 MS.gene36392:intron 45.0%
AGAATCTTACATGCCGTGTC+GGG - chr2.2:2725424-2725443 MS.gene36392:intron 45.0%
AGAGCCACCTTCTTAAGATC+AGG + chr2.2:2728525-2728544 None:intergenic 45.0%
AGTACCTGGACCACTTGTTT+GGG - chr2.2:2725741-2725760 MS.gene36392:intron 45.0%
CAAGTTATCTTTGTGCAGGC+GGG + chr2.2:2724809-2724828 None:intergenic 45.0%
CAGAATCTTACATGCCGTGT+CGG - chr2.2:2725423-2725442 MS.gene36392:intron 45.0%
CAGACCTGATCTTAAGAAGG+TGG - chr2.2:2728518-2728537 MS.gene36392:intron 45.0%
CCAGAAAAAAAAGGGATGCC+AGG + chr2.2:2727489-2727508 None:intergenic 45.0%
CCCGATTCTTGTTCTTTGTG+TGG - chr2.2:2726623-2726642 MS.gene36392:intron 45.0%
CGTAAGAAGGTTCCTTTGGT+GGG - chr2.2:2728171-2728190 MS.gene36392:intron 45.0%
CTCTCCTCAACAACAATCCA+AGG - chr2.2:2725574-2725593 MS.gene36392:intron 45.0%
GAAGAAAGAGTTCAGGAGGA+TGG - chr2.2:2726545-2726564 MS.gene36392:intron 45.0%
GATTTGTGAAGCAAAGCAGC+AGG + chr2.2:2726519-2726538 None:intergenic 45.0%
GGATCCTTCTTACGTGTTAG+AGG + chr2.2:2727046-2727065 None:intergenic 45.0%
GTTAATAGCTCATCACCGCT+GGG + chr2.2:2727288-2727307 None:intergenic 45.0%
TCAGGATCTGTTGGGAAAGT+GGG + chr2.2:2724851-2724870 None:intergenic 45.0%
TGAGCCTCTAACACGTAAGA+AGG - chr2.2:2727039-2727058 MS.gene36392:intron 45.0%
TGGGGAACACCAAATCTAAC+TGG + chr2.2:2727576-2727595 None:intergenic 45.0%
TGTTAATAGCTCATCACCGC+TGG + chr2.2:2727289-2727308 None:intergenic 45.0%
TTAAGAAGGTGGCTCTTGCA+AGG - chr2.2:2728529-2728548 MS.gene36392:intron 45.0%
TTCACGATCTCCCAAACAAG+TGG + chr2.2:2725754-2725773 None:intergenic 45.0%
TTCATTGAAGAAGCCCGCAT+AGG + chr2.2:2727324-2727343 None:intergenic 45.0%
TTGAACGGTCAGGATCTGTT+GGG + chr2.2:2724859-2724878 None:intergenic 45.0%
TTGTTTGGGAGATCGTGAAG+AGG - chr2.2:2725755-2725774 MS.gene36392:intron 45.0%
TTTGAACGGTCAGGATCTGT+TGG + chr2.2:2724860-2724879 None:intergenic 45.0%
! GATTTGGACCGCTGGATTTT+GGG + chr2.2:2725479-2725498 None:intergenic 45.0%
! GTTTGAAGCCCAAAATCCAG+CGG - chr2.2:2725468-2725487 MS.gene36392:intron 45.0%
!!! CCTGGCATCCCTTTTTTTTC+TGG - chr2.2:2727486-2727505 MS.gene36392:intron 45.0%
!!! CTATCTTTTTGGGTGGGGTT+TGG + chr2.2:2724973-2724992 None:intergenic 45.0%
!!! CTTGTTTTGCTTCCTTGGCT+TGG + chr2.2:2726496-2726515 None:intergenic 45.0%
!!! TTTTTGGGTGGGGTTTGGTA+TGG + chr2.2:2724968-2724987 None:intergenic 45.0%
AGAGTTCAGGAGGATGGCTA+AGG - chr2.2:2726551-2726570 MS.gene36392:intron 50.0%
ATCACTGCTGGGGTCCATAT+AGG + chr2.2:2727872-2727891 None:intergenic 50.0%
ATCTCCCAAACAAGTGGTCC+AGG + chr2.2:2725748-2725767 None:intergenic 50.0%
ATCTGTTGGGAAAGTGGGAC+AGG + chr2.2:2724846-2724865 None:intergenic 50.0%
CAGTACCTGGACCACTTGTT+TGG - chr2.2:2725740-2725759 MS.gene36392:intron 50.0%
CTGGCGCTAAGAAGAGAAAC+AGG - chr2.2:2728589-2728608 MS.gene36392:CDS 50.0%
GCACCTCTGCCAGTTAGATT+TGG - chr2.2:2727564-2727583 MS.gene36392:CDS 50.0%
GCTATTAACGGTGCAGGCAA+AGG + chr2.2:2727164-2727183 None:intergenic 50.0%
GGCTAAGGCTGTGCAAAATC+AGG - chr2.2:2726566-2726585 MS.gene36392:intron 50.0%
GTCAGGATCTGTTGGGAAAG+TGG + chr2.2:2724852-2724871 None:intergenic 50.0%
GTTAACAGCTCATCGCCGAT+GGG + chr2.2:2728150-2728169 None:intergenic 50.0%
GTTAACGGCTCATCACTGCT+GGG + chr2.2:2727883-2727902 None:intergenic 50.0%
GTTAGAGGCTCATCACAGCA+AGG + chr2.2:2727031-2727050 None:intergenic 50.0%
GTTAGAGGCTCATCACTGCT+GGG + chr2.2:2727595-2727614 None:intergenic 50.0%
TAGCGCCAGACTTTGCAACT+CGG + chr2.2:2728578-2728597 None:intergenic 50.0%
TGAGGGGAGCAGATATGTCT+TGG - chr2.2:2728034-2728053 MS.gene36392:intron 50.0%
TGCAGGCAAAGGAGATCAGA+AGG + chr2.2:2727153-2727172 None:intergenic 50.0%
TGTTAACAGCTCATCGCCGA+TGG + chr2.2:2728151-2728170 None:intergenic 50.0%
TGTTAACGGCTCATCACTGC+TGG + chr2.2:2727884-2727903 None:intergenic 50.0%
TGTTAGAGGCTCATCACTGC+TGG + chr2.2:2727596-2727615 None:intergenic 50.0%
TTAACGGCTCATCACTGCTG+GGG + chr2.2:2727882-2727901 None:intergenic 50.0%
TTAGAGGCTCATCACTGCTG+GGG + chr2.2:2727594-2727613 None:intergenic 50.0%
! GGATTTGGACCGCTGGATTT+TGG + chr2.2:2725480-2725499 None:intergenic 50.0%
! TTGCTTTGGATTTGGACCGC+TGG + chr2.2:2725487-2725506 None:intergenic 50.0%
!!! GCAGGCTTGTTTTGCTTCCT+TGG + chr2.2:2726501-2726520 None:intergenic 50.0%
!!! GTTTTGCTTCCTTGGCTTGG+TGG + chr2.2:2726493-2726512 None:intergenic 50.0%
AGCCTCCGAGTTGCAAAGTC+TGG - chr2.2:2728570-2728589 MS.gene36392:intron 55.0%
AGGCACGCTATTAACGGTGC+AGG + chr2.2:2727170-2727189 None:intergenic 55.0%
CCCACTAAGGTAACCCGACA+CGG + chr2.2:2725440-2725459 None:intergenic 55.0%
CCGTGTCGGGTTACCTTAGT+GGG - chr2.2:2725437-2725456 MS.gene36392:intron 55.0%
TGTTGGCAACCACCAAGCCA+AGG - chr2.2:2726481-2726500 MS.gene36392:intron 55.0%
TTGCGTGTGTGATGTGCCTC+AGG - chr2.2:2728479-2728498 MS.gene36392:intron 55.0%
CGCCAGACTTTGCAACTCGG+AGG + chr2.2:2728575-2728594 None:intergenic 60.0%
GCCGTGTCGGGTTACCTTAG+TGG - chr2.2:2725436-2725455 MS.gene36392:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 2724796 2728626 2724796 ID=MS.gene36392
chr2.2 mRNA 2724796 2728626 2724796 ID=MS.gene36392.t1;Parent=MS.gene36392
chr2.2 exon 2728584 2728626 2728584 ID=MS.gene36392.t1.exon1;Parent=MS.gene36392.t1
chr2.2 CDS 2728584 2728626 2728584 ID=cds.MS.gene36392.t1;Parent=MS.gene36392.t1
chr2.2 exon 2727542 2727679 2727542 ID=MS.gene36392.t1.exon2;Parent=MS.gene36392.t1
chr2.2 CDS 2727542 2727679 2727542 ID=cds.MS.gene36392.t1;Parent=MS.gene36392.t1
chr2.2 exon 2726835 2726998 2726835 ID=MS.gene36392.t1.exon3;Parent=MS.gene36392.t1
chr2.2 CDS 2726835 2726998 2726835 ID=cds.MS.gene36392.t1;Parent=MS.gene36392.t1
chr2.2 exon 2724796 2724921 2724796 ID=MS.gene36392.t1.exon4;Parent=MS.gene36392.t1
chr2.2 CDS 2724796 2724921 2724796 ID=cds.MS.gene36392.t1;Parent=MS.gene36392.t1
Gene Sequence

>MS.gene36392

ATGCGTGGGACCCGCCTGCACAAAGATAACTTGATGGCAGCAGGTCACCTGTCCCACTTTCCCAACAGATCCTGACCGTTCAAATTAAATAGTAATATATCAATGGCTCAAAATTGCTTTCACTTTTAAAATGCACAACTTGTGCATGATGCACAAATATTGTGTTTGTCCATACCAAACCCCACCCAAAAAGATAGTACAAATATCATTATTTAAAAAATTGTGTTTTGTTGTGTGTACTTTTAAAAAGACTTTAGATGTCTATAAAGTCTAACTTAATTGACAATGCTCATATTATTAGACTAAACATTTTTGTCTGACTTCAATTCTTCAAAAAAAAAAAATCTACACTCGACTTCAAATTCATAAGTTTGTAGTTGCGTGTAAATTTCAAACCAAAATTTGAACCATTCAATTTTTTTTGTTTGTTCAAGGAAAGACATTAAAGATATTGGTCTAACACAATTCAATCTTCCCTTAAAAAAAGAAGAAAAAAAAAACACAATTCAATCTTTGTCAAATCAATAATATTTAAATATATGTTCTCAATATCTTATATAAAATTAAAAAAAAAAATGGTTATGTTGTGTGTTTTGTAAGATAAATTAAAAAATCAAAACAAATATTCAGAATCTTACATGCCGTGTCGGGTTACCTTAGTGGGCTATATGTGTTTGAAGCCCAAAATCCAGCGGTCCAAATCCAAAGCAAATTAGGGTTTCCAATTTCATTTTGCTATAAATCTTCACACAAGAAAACCTATTCTTCTCAAATCTCACTCTCCTCAACAACAATCCAAGGTATTTTCGTTTTGTCATTGTGCTTTTTAGGGTTATCTTTGATTTTCAGATCAGATTTGGTATTAATCTAGATCTGTATTGTATTGTGTTATAGGTTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGCAACAGTACCTGGACCACTTGTTTGGGAGATCGTGAAGAGGAACAACTCTTTTTTGGTTAAAGAGTTTGGAAATAACACTCAGAGTGTTCAGTTCAGCAGAGAACCTAATAATCTTTACAATCTTAACTCTTACAAATACTCTGGTTAGTATCAAAATCATTTCGTAAATGTATAATAGTTTTATGATTAATGGGTAGTAATAAAAATGTTTTTTTTATTCTGTGATGGCTGTTTTTGTTGTTGAAGGGTTCTGTTTGGATAAACAGCTTACTTTGCATCTTAAAGTATAATGGGTTATCATATAACTGCTTATGATTAAGTTATTTCTATAGCATAAGCTAAAATAAAGTCAAACTGTTTTTGTATAATCTATTAGCTGTTTTGATAAGCTATCATGAAGAGCTTATGTAATTAAGCTGAAAACTGCTTATGCACATCTCGTAGACTGTTTTTATAAGTTCTTCCAAGCAGTATAATAAATGCTTATGCAAGTAGATATGCTCAAGCAAGCCTAAGTTTTAATCAAATGTGATTCTTTTGTGACATACTTGTTGAAATTAGTGAAGTTGGTGTTGAGATTTAGATTTCAATAATGTTAATGCCATGTGTATGATGGTTTCATAGTAGCAATTTTAATTTTTTTTGGTGAGTGAAGCTTACTTCATGTTTTTATTATGGTATAATAGGTTTGGCCAACAAGAAAACTGTAACTATTCAGTCTGCTGGCAAAGATCAGTCTGTGTTGTTGGCAACCACCAAGCCAAGGAAGCAAAACAAGCCTGCTGCTTTGCTTCACAAATCTGTTATGAAGAAAGAGTTCAGGAGGATGGCTAAGGCTGTGCAAAATCAGGTAATTTTTATAAAAAAAATTAGTAAATTTATGCTCCCGATTCTTGTTCTTTGTGTGGAATTAGTGGTTGGAAAATTCTGCTAAGTTGGTTGTTTTCATGTTTCACAATATTGGTTTAGTAGTTGTATTCATATAGTTGTCATTCTAGGTGCTAAATATCTAGTCAAATCTACTGCTAGGCAGAAATAGTTGAAAATTGTTTTGAATTGGTTGGTGCCAAATTATTTTGAATTAGAAATATTCACGATAATTGGATCTATATTAATTTTCTGAAGTTGTTTCAGTGCATGTTAATGGAAATACTGCCGGATTAGTTCAAAAATAAAACATTTGGAAACGTGTGGTTTATTTACATAAAAGCATTTGGAAACGCGTGGTTTATTTACATAAAAGCTTTAAAATTCAAACTATTTGTACCCCTCTTTCTTTGTTCGAATTTTCCTTGCTGTGATGAGCCTCTAACACGTAAGAAGGATCCATTTGTTGGGTTTATTCAGTGAAATATTATTGTTACGCTTGGCTTCTGAGCTTTGATTATTTAAAAGCTATTTTGTAAATGTAACCTTCTGATCTCCTTTGCCTGCACCGTTAATAGCGTGCCTCTCTTTTGTAACTTAAAACTATTTTCCCTTACGTTCCCATTCAAATTATCTATTTGTTTAATTGAAATCATTTTAAACGGATTCAACTAGTGTTACCCAGCGGTGATGAGCTATTAACACGTAAGAAGAATCCTATGCGGGCTTCTTCAATGAAATTTACTTGCTACGCTTGGCTTTTGAGCTTTGATCATTCGGAAGTTGTTTTGTGAATATAGCTTTTCGACATCTGATAATTCAAAATATTTTTCTTAACGAATCTAACCTTTTTATCTAAGTCATTTTGTTTATTGTGCGAACCTGGCATCCCTTTTTTTTCTGGTGATCTGGTTGTCCTAATTGCCATGTGATTTATCTGTGTAAATTAGAAACATTTTGCACCTCTGCCAGTTAGATTTGGTGTTCCCCAGCAGTGATGAGCCTCTAACATATAAGATGAATCCCTATGTGGGTTTCTTCAATGAAATTTACTTGTTACGCTTGGCTTCTGAGCTTTGATCATTCAGAAGTTGTTTCGTGAATATAGCCTAGTGACCTCTTATAATTCAAAACAGTTTTCCTAATGAATCTAACCTTTTTATCTCTTCTTTATTGTGCGAACCTGGTCTCTATTTTATCTGGTGATCTAGTTTTCCTAATTGCTACCATGCGATTTATCTGTGTAAATTAAAATAATTTTGTACCTATATGGACCCCAGCAGTGATGAGCCGTTAACATATAAGAAGAATCCCTATGTGGGTTTCTTCAATGAAATTTACTTGTTACGCTTGGCTTCTGAGCTTTGATCTTCAATAAGTATTTTGTGAACTTGCCCTTTTGATCTCTTCATAATTTATGTTATTTGTCTGAGGGGAGCAGATATGTCTTGGTAAACTATTTTCCTCATATGCTATTTTGCATTTATTCTGTATATAGTGAAATTCATTTTAAACCACCACTGCTAATATGATTGAATGCTTCCCATCGGCGATGAGCTGTTAACACGTAAGAAGGTTCCTTTGGTGGGTTTCTTCAATGAAATTTACTTGTTACGCTTGGCTTCTGAGATTTGATCATTCAAATGTTCTTCCTTGATTTTTTTAATTCAAGTTTTTATTTAGAGAAGCTGGTCTCTCCTTTATTTTGCAGCAAATGACTCTCCCAAATGCTGCCCAACAAATTATTTTAGAATGGTTTTAGTCTAATATCTGTTCAAATTTGTTGCATCTTGTTTATGTTTAGTTGTACTTCTGATGAATTTCTATTTCATGAAAAAGCTTCATTGCCTTAATCTATGAGCTAATTTGATTTTTTGCGTGTGTGATGTGCCTCAGGTTGCAGATAACTACTACAGACCTGATCTTAAGAAGGTGGCTCTTGCAAGGTTGAGTGCTGTTAATAGGAGCCTCCGAGTTGCAAAGTCTGGCGCTAAGAAGAGAAACAGGCATGCAGGAAAGTGA
Protein sequence

>MS.gene36392.t1

MRGTRLHKDNLMAAVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPNNLYNLNSYKYSGLANKKTVTIQSAGKDQSVLLATTKPRKQNKPAALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKVALARLSAVNRSLRVAKSGAKKRNRHAGK