Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23525.t1 | RHN48157.1 | 94.6 | 809 | 39 | 1 | 5 | 813 | 5 | 808 | 0.00E+00 | 1391.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23525.t1 | Q6CEW9 | 33.2 | 831 | 452 | 22 | 6 | 797 | 49 | 815 | 6.7e-92 | 340.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23525.t1 | A0A396HB47 | 94.6 | 809 | 39 | 1 | 5 | 813 | 5 | 808 | 0.0e+00 | 1391.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene23525 | 0.840608 | 7.85E-58 | -1.69E-46 |
MS.gene049343 | MS.gene23525 | 0.810817 | 9.55E-51 | -1.69E-46 |
MS.gene049501 | MS.gene23525 | 0.823494 | 1.34E-53 | -1.69E-46 |
MS.gene049850 | MS.gene23525 | 0.800831 | 1.20E-48 | -1.69E-46 |
MS.gene050556 | MS.gene23525 | 0.81318 | 2.92E-51 | -1.69E-46 |
MS.gene050759 | MS.gene23525 | 0.810877 | 9.26E-51 | -1.69E-46 |
MS.gene051198 | MS.gene23525 | 0.813895 | 2.03E-51 | -1.69E-46 |
MS.gene051574 | MS.gene23525 | 0.801603 | 8.33E-49 | -1.69E-46 |
MS.gene051744 | MS.gene23525 | 0.833832 | 4.25E-56 | -1.69E-46 |
MS.gene05188 | MS.gene23525 | 0.800963 | 1.13E-48 | -1.69E-46 |
MS.gene052108 | MS.gene23525 | 0.801868 | 7.35E-49 | -1.69E-46 |
MS.gene052384 | MS.gene23525 | 0.831492 | 1.62E-55 | -1.69E-46 |
MS.gene052519 | MS.gene23525 | 0.828599 | 8.22E-55 | -1.69E-46 |
MS.gene052582 | MS.gene23525 | 0.834798 | 2.43E-56 | -1.69E-46 |
MS.gene052584 | MS.gene23525 | 0.851462 | 8.74E-61 | -1.69E-46 |
MS.gene053079 | MS.gene23525 | 0.833126 | 6.38E-56 | -1.69E-46 |
MS.gene053226 | MS.gene23525 | 0.844046 | 9.63E-59 | -1.69E-46 |
MS.gene05415 | MS.gene23525 | 0.818966 | 1.49E-52 | -1.69E-46 |
MS.gene05423 | MS.gene23525 | 0.803119 | 4.06E-49 | -1.69E-46 |
MS.gene054576 | MS.gene23525 | 0.81604 | 6.79E-52 | -1.69E-46 |
MS.gene054651 | MS.gene23525 | 0.833874 | 4.15E-56 | -1.69E-46 |
MS.gene054657 | MS.gene23525 | 0.823915 | 1.07E-53 | -1.69E-46 |
MS.gene054775 | MS.gene23525 | 0.800181 | 1.63E-48 | -1.69E-46 |
MS.gene055228 | MS.gene23525 | 0.800925 | 1.15E-48 | -1.69E-46 |
MS.gene055513 | MS.gene23525 | 0.823957 | 1.05E-53 | -1.69E-46 |
MS.gene055586 | MS.gene23525 | 0.800461 | 1.43E-48 | -1.69E-46 |
MS.gene055818 | MS.gene23525 | 0.808642 | 2.80E-50 | -1.69E-46 |
MS.gene055841 | MS.gene23525 | 0.820011 | 8.59E-53 | -1.69E-46 |
MS.gene056050 | MS.gene23525 | 0.810996 | 8.73E-51 | -1.69E-46 |
MS.gene056162 | MS.gene23525 | 0.807002 | 6.25E-50 | -1.69E-46 |
MS.gene056215 | MS.gene23525 | 0.800526 | 1.38E-48 | -1.69E-46 |
MS.gene056366 | MS.gene23525 | 0.818047 | 2.40E-52 | -1.69E-46 |
MS.gene056595 | MS.gene23525 | 0.802617 | 5.15E-49 | -1.69E-46 |
MS.gene056776 | MS.gene23525 | 0.82233 | 2.51E-53 | -1.69E-46 |
MS.gene056779 | MS.gene23525 | 0.80625 | 9.01E-50 | -1.69E-46 |
MS.gene05689 | MS.gene23525 | 0.821762 | 3.40E-53 | -1.69E-46 |
MS.gene057208 | MS.gene23525 | 0.807828 | 4.18E-50 | -1.69E-46 |
MS.gene057314 | MS.gene23525 | 0.802327 | 5.91E-49 | -1.69E-46 |
MS.gene057444 | MS.gene23525 | 0.801267 | 9.76E-49 | -1.69E-46 |
MS.gene057893 | MS.gene23525 | -0.80637 | 8.50E-50 | -1.69E-46 |
MS.gene058548 | MS.gene23525 | 0.817317 | 3.51E-52 | -1.69E-46 |
MS.gene058829 | MS.gene23525 | 0.803181 | 3.94E-49 | -1.69E-46 |
MS.gene058979 | MS.gene23525 | 0.812045 | 5.17E-51 | -1.69E-46 |
MS.gene05954 | MS.gene23525 | 0.819528 | 1.11E-52 | -1.69E-46 |
MS.gene059625 | MS.gene23525 | 0.807376 | 5.21E-50 | -1.69E-46 |
MS.gene05979 | MS.gene23525 | 0.802681 | 5.00E-49 | -1.69E-46 |
MS.gene060365 | MS.gene23525 | 0.814849 | 1.25E-51 | -1.69E-46 |
MS.gene060429 | MS.gene23525 | 0.80233 | 5.91E-49 | -1.69E-46 |
MS.gene06052 | MS.gene23525 | 0.80172 | 7.88E-49 | -1.69E-46 |
MS.gene060572 | MS.gene23525 | 0.836153 | 1.11E-56 | -1.69E-46 |
MS.gene060935 | MS.gene23525 | 0.806255 | 8.99E-50 | -1.69E-46 |
MS.gene060937 | MS.gene23525 | 0.802426 | 5.64E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23525.t1 | MTR_7g094660 | 85.012 | 814 | 116 | 3 | 1 | 813 | 57 | 865 | 0.0 | 1356 |
MS.gene23525.t1 | MTR_7g096260 | 94.643 | 728 | 34 | 1 | 86 | 813 | 1 | 723 | 0.0 | 1318 |
MS.gene23525.t1 | MTR_7g096260 | 94.538 | 714 | 34 | 1 | 100 | 813 | 1 | 709 | 0.0 | 1288 |
MS.gene23525.t1 | MTR_7g094670 | 75.469 | 640 | 141 | 6 | 41 | 675 | 663 | 1291 | 0.0 | 855 |
MS.gene23525.t1 | MTR_7g094670 | 73.123 | 506 | 76 | 5 | 296 | 800 | 1227 | 1673 | 0.0 | 698 |
MS.gene23525.t1 | MTR_2g018390 | 58.480 | 513 | 104 | 4 | 42 | 534 | 17 | 440 | 8.59e-169 | 496 |
MS.gene23525.t1 | MTR_1g061870 | 31.088 | 193 | 111 | 7 | 581 | 766 | 94 | 271 | 4.95e-13 | 72.8 |
MS.gene23525.t1 | MTR_1g097440 | 30.890 | 191 | 114 | 8 | 592 | 776 | 120 | 298 | 4.27e-12 | 70.1 |
MS.gene23525.t1 | MTR_7g102730 | 31.088 | 193 | 109 | 8 | 583 | 766 | 89 | 266 | 5.90e-12 | 69.7 |
MS.gene23525.t1 | MTR_7g102730 | 26.577 | 222 | 128 | 7 | 566 | 768 | 166 | 371 | 5.04e-11 | 66.6 |
MS.gene23525.t1 | MTR_8g092550 | 28.497 | 193 | 112 | 7 | 583 | 761 | 196 | 376 | 1.07e-11 | 68.9 |
MS.gene23525.t1 | MTR_6g040190 | 32.057 | 209 | 123 | 10 | 592 | 795 | 115 | 309 | 1.30e-11 | 68.6 |
MS.gene23525.t1 | MTR_4g117350 | 37.755 | 98 | 50 | 1 | 278 | 375 | 72 | 158 | 1.55e-11 | 63.9 |
MS.gene23525.t1 | MTR_1g019150 | 22.821 | 390 | 255 | 9 | 279 | 663 | 34 | 382 | 1.55e-11 | 68.6 |
MS.gene23525.t1 | MTR_5g071540 | 36.264 | 91 | 58 | 0 | 278 | 368 | 40 | 130 | 1.57e-11 | 63.5 |
MS.gene23525.t1 | MTR_3g029580 | 39.726 | 73 | 44 | 0 | 278 | 350 | 33 | 105 | 2.53e-11 | 62.4 |
MS.gene23525.t1 | MTR_4g085540 | 29.358 | 218 | 117 | 7 | 585 | 783 | 208 | 407 | 2.79e-11 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23525.t1 | AT4G19610 | 50.697 | 789 | 347 | 12 | 6 | 783 | 39 | 796 | 0.0 | 717 |
MS.gene23525.t1 | AT5G08695 | 42.399 | 717 | 312 | 19 | 6 | 717 | 41 | 661 | 1.39e-156 | 473 |
MS.gene23525.t1 | AT5G05720 | 32.781 | 302 | 139 | 9 | 510 | 802 | 204 | 450 | 4.89e-29 | 121 |
MS.gene23525.t1 | AT1G71770 | 25.191 | 393 | 238 | 13 | 279 | 661 | 61 | 407 | 6.53e-16 | 82.4 |
MS.gene23525.t1 | AT1G71770 | 25.191 | 393 | 238 | 13 | 279 | 661 | 61 | 407 | 6.53e-16 | 82.4 |
MS.gene23525.t1 | AT4G20030 | 38.776 | 98 | 52 | 2 | 278 | 367 | 41 | 138 | 8.64e-14 | 70.1 |
MS.gene23525.t1 | AT4G34110 | 29.384 | 211 | 112 | 7 | 592 | 783 | 217 | 409 | 1.72e-13 | 74.7 |
MS.gene23525.t1 | AT2G23350 | 23.529 | 391 | 250 | 11 | 277 | 661 | 46 | 393 | 7.67e-13 | 72.8 |
MS.gene23525.t1 | AT2G23350 | 28.440 | 218 | 119 | 7 | 585 | 783 | 220 | 419 | 1.77e-11 | 68.2 |
MS.gene23525.t1 | AT2G36660 | 24.214 | 318 | 178 | 11 | 472 | 771 | 114 | 386 | 1.40e-12 | 71.6 |
MS.gene23525.t1 | AT1G34140 | 30.769 | 195 | 116 | 9 | 576 | 765 | 15 | 195 | 2.84e-11 | 67.0 |
MS.gene23525.t1 | AT1G49760 | 28.829 | 222 | 119 | 9 | 583 | 783 | 215 | 418 | 5.15e-11 | 66.6 |
MS.gene23525.t1 | AT1G49760 | 28.829 | 222 | 119 | 9 | 583 | 783 | 215 | 418 | 5.15e-11 | 66.6 |
MS.gene23525.t1 | AT3G16380 | 28.505 | 214 | 137 | 8 | 592 | 801 | 114 | 315 | 6.86e-11 | 66.2 |
MS.gene23525.t1 | AT1G47490 | 25.000 | 216 | 135 | 5 | 591 | 787 | 198 | 405 | 7.77e-11 | 65.5 |
Find 142 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCACGTTTCTTATCGGATTT+AGG | 0.149160 | 7.3:+14985841 | None:intergenic |
CATCTGTTGTCTTGAAATTT+AGG | 0.160094 | 7.3:+14976909 | None:intergenic |
TGAAGAAAATCTTGAAGTTT+TGG | 0.190865 | 7.3:+14986027 | None:intergenic |
GCAAAGATGTTTGGGAAATT+TGG | 0.212543 | 7.3:-14981734 | MS.gene23525:CDS |
TGTTACCTGGCTGCAAATTC+TGG | 0.224005 | 7.3:+14985174 | None:intergenic |
GTTTGGGAAATTTGGTAGTT+TGG | 0.255183 | 7.3:-14981726 | MS.gene23525:CDS |
AAGGAAATATGAAATTTAAA+AGG | 0.260205 | 7.3:-14975804 | MS.gene23525:CDS |
CTTCTTGGGGTTCTTTCAAT+AGG | 0.266349 | 7.3:+14985631 | None:intergenic |
TTAAAATTGCCAATGAAGTT+TGG | 0.272537 | 7.3:-14976195 | MS.gene23525:CDS |
AAGTGTTTGCAACGATTTAC+AGG | 0.273150 | 7.3:-14976660 | MS.gene23525:intron |
ACTCTTGAGCACCACTTCTT+GGG | 0.274073 | 7.3:+14985617 | None:intergenic |
AGAAATTACGTGGTCGAATA+TGG | 0.281071 | 7.3:+14985445 | None:intergenic |
AATGAACTTGCAAAGATGTT+TGG | 0.284821 | 7.3:-14981743 | MS.gene23525:CDS |
CTTAAGCTCACGTTTCTTAT+CGG | 0.286303 | 7.3:+14985834 | None:intergenic |
GAAACTCCTTTCTTATGTTC+TGG | 0.295455 | 7.3:+14985499 | None:intergenic |
AGGAGCCCACTCCAAGTATA+AGG | 0.309976 | 7.3:+14978108 | None:intergenic |
CACGTTTCTTATCGGATTTA+GGG | 0.316732 | 7.3:+14985842 | None:intergenic |
TGTTAGTAAAAGTGATTTAC+TGG | 0.319440 | 7.3:-14981960 | MS.gene23525:CDS |
AACTCTTGAGCACCACTTCT+TGG | 0.320155 | 7.3:+14985616 | None:intergenic |
CTTGAGGAGGGTAAAGTTAA+TGG | 0.324984 | 7.3:-14981824 | MS.gene23525:CDS |
GCAGCAACATCATCAGCTTC+TGG | 0.325515 | 7.3:+14981935 | None:intergenic |
CAACCAAGCAACATTGAATA+AGG | 0.334117 | 7.3:-14985935 | MS.gene23525:CDS |
CTATGATTTCCAAACTTCAT+TGG | 0.341580 | 7.3:+14976186 | None:intergenic |
AGACAGTTATTTAGCCCATT+TGG | 0.354222 | 7.3:-14976377 | MS.gene23525:CDS |
ATGAACTTGCAAAGATGTTT+GGG | 0.357412 | 7.3:-14981742 | MS.gene23525:CDS |
TTCTTGGGGTTCTTTCAATA+GGG | 0.359760 | 7.3:+14985632 | None:intergenic |
GTTTGCAACTGATGTACTTT+CGG | 0.364220 | 7.3:+14985909 | None:intergenic |
GTCGGACAATTCAATCTTCC+AGG | 0.365242 | 7.3:-14983916 | MS.gene23525:CDS |
TGCTTGGTTGTTAACATCAT+TGG | 0.368860 | 7.3:+14985948 | None:intergenic |
TGATGGAGTAATCTCTGATA+TGG | 0.381279 | 7.3:-14985809 | MS.gene23525:CDS |
AGGACATGAAGACAATTCTA+TGG | 0.383595 | 7.3:-14986061 | MS.gene23525:CDS |
AATTTAGGTTCTTGACAAAC+AGG | 0.403067 | 7.3:+14976924 | None:intergenic |
GAATTGCTTCCTGAGCTTCC+CGG | 0.403099 | 7.3:+14986416 | None:intergenic |
ATGAATATAAGCTATTCCTT+TGG | 0.407937 | 7.3:+14985206 | None:intergenic |
GAATGTCTTGGTAAATTAGC+TGG | 0.410019 | 7.3:+14983873 | None:intergenic |
GAAGAGCATTTCAGTCAGTT+TGG | 0.410037 | 7.3:-14985276 | MS.gene23525:CDS |
TGTTGCTGCAAATGTTGCTC+TGG | 0.423211 | 7.3:-14981921 | MS.gene23525:CDS |
TGGAGTGAATGTGGAGTCTT+TGG | 0.425222 | 7.3:-14981852 | MS.gene23525:CDS |
ATAGTAATCACCTGGCCAAA+TGG | 0.426128 | 7.3:+14976362 | None:intergenic |
AAGCAGGTGGCTCGAAAACT+TGG | 0.428560 | 7.3:-14986177 | MS.gene23525:intron |
ACTTGTGAGTCGCTTAAGAT+AGG | 0.434521 | 7.3:+14985883 | None:intergenic |
CTGTTGCAGTGAGGAGGAAC+TGG | 0.438578 | 7.3:-14985298 | MS.gene23525:intron |
TCTCCTTATTCAATGTTGCT+TGG | 0.450137 | 7.3:+14985932 | None:intergenic |
TCTTCATTGCTTGAATGTCT+TGG | 0.451778 | 7.3:+14983861 | None:intergenic |
AACAATCATGCTAGAGCTAA+AGG | 0.459016 | 7.3:-14986081 | MS.gene23525:CDS |
CTCTCAAGCACCCACTTGTA+TGG | 0.465466 | 7.3:-14976105 | MS.gene23525:CDS |
GCTCAATTTAATGAACATAG+TGG | 0.467944 | 7.3:-14975880 | MS.gene23525:CDS |
ATTCACTTGAGACTTATCAT+TGG | 0.468768 | 7.3:+14985552 | None:intergenic |
GTTATTTAGCCCATTTGGCC+AGG | 0.472872 | 7.3:-14976372 | MS.gene23525:intron |
TCGTACTGACCGGGAAGCTC+AGG | 0.475131 | 7.3:-14986425 | MS.gene23525:CDS |
GACAACAGATGAGGGTTTGA+GGG | 0.476637 | 7.3:-14976897 | MS.gene23525:CDS |
AAAGCAGCTTTAGCTTCTGC+TGG | 0.476978 | 7.3:+14978859 | None:intergenic |
TAGTAATCACCTGGCCAAAT+GGG | 0.481132 | 7.3:+14976363 | None:intergenic |
TGTGGAGTATGTTACTCAGC+AGG | 0.483709 | 7.3:-14976151 | MS.gene23525:CDS |
CCACTTGTATGGCAGACATC+TGG | 0.484106 | 7.3:-14976094 | MS.gene23525:intron |
ATACTAACTTATCCAAGAAA+AGG | 0.484272 | 7.3:-14975849 | MS.gene23525:CDS |
AGACAACAGATGAGGGTTTG+AGG | 0.485163 | 7.3:-14976898 | MS.gene23525:CDS |
TTATTGGATTTCGTACTGAC+CGG | 0.487541 | 7.3:-14986435 | MS.gene23525:CDS |
TTCTTCAGGTCATGCAACCT+CGG | 0.490613 | 7.3:-14986011 | MS.gene23525:CDS |
AACAACGAAGAGAGGAAGAA+AGG | 0.496906 | 7.3:-14983189 | MS.gene23525:CDS |
TGCTCCCTTATACTTGGAGT+GGG | 0.497665 | 7.3:-14978113 | MS.gene23525:CDS |
TCAGTTTGGCAGTGTCTCAC+AGG | 0.497833 | 7.3:-14985262 | MS.gene23525:CDS |
CTCTTGAGCACCACTTCTTG+GGG | 0.499235 | 7.3:+14985618 | None:intergenic |
ATCAGATGTTGATATTGATC+CGG | 0.499899 | 7.3:-14977978 | MS.gene23525:CDS |
TATTGATCCGGACAGAATAG+AGG | 0.504104 | 7.3:-14977966 | MS.gene23525:intron |
TGGTCGAATATGGCAGATTA+CGG | 0.507492 | 7.3:+14985455 | None:intergenic |
TAGGGCTGCTCCCTTATACT+TGG | 0.507845 | 7.3:-14978119 | MS.gene23525:CDS |
GTCTCAAGTGAATGCAATTG+AGG | 0.508138 | 7.3:-14985542 | MS.gene23525:CDS |
TCTTCAGGTCATGCAACCTC+GGG | 0.508661 | 7.3:-14986010 | MS.gene23525:CDS |
GGTTCATTTGCTTGTTCATG+AGG | 0.514266 | 7.3:-14985241 | MS.gene23525:CDS |
CCAACATTCTTGACATGACA+AGG | 0.514376 | 7.3:+14976488 | None:intergenic |
GGTCAAACCTCTATTCTGTC+CGG | 0.514475 | 7.3:+14977959 | None:intergenic |
AGGAAAGCAGCTGAAGCTAA+AGG | 0.515410 | 7.3:-14983169 | MS.gene23525:CDS |
CAGTTCCAGAATTTGCAGCC+AGG | 0.515828 | 7.3:-14985179 | MS.gene23525:intron |
GAAGACCAAGAAAATACTGT+TGG | 0.520732 | 7.3:-14985586 | MS.gene23525:CDS |
TTTCAGTAAACACATGAAAG+AGG | 0.521106 | 7.3:-14976870 | MS.gene23525:CDS |
AGTGAATGCAATTGAGGAAG+AGG | 0.522200 | 7.3:-14985536 | MS.gene23525:CDS |
ATGAAGTTTGGAAATCATAG+AGG | 0.524093 | 7.3:-14976183 | MS.gene23525:CDS |
TAAGAAAACATACTGTATCC+TGG | 0.525227 | 7.3:+14983113 | None:intergenic |
GAATGATGGAATTGCTGAAA+AGG | 0.528711 | 7.3:-14978041 | MS.gene23525:CDS |
GGAGCCCACTCCAAGTATAA+GGG | 0.529811 | 7.3:+14978109 | None:intergenic |
CCAAGAAAATACTGTTGGAA+AGG | 0.530760 | 7.3:-14985581 | MS.gene23525:CDS |
AAAAGAAGGTGAGAGTTTGA+AGG | 0.532141 | 7.3:-14975923 | MS.gene23525:CDS |
GAATAGTCTGTTCATGCGCC+AGG | 0.533487 | 7.3:-14983131 | MS.gene23525:CDS |
CTGCTCCCTTATACTTGGAG+TGG | 0.533683 | 7.3:-14978114 | MS.gene23525:CDS |
TCAAATCCAGAACATAAGAA+AGG | 0.535333 | 7.3:-14985505 | MS.gene23525:CDS |
AAACGTGAGCTTAAGCATGA+TGG | 0.535732 | 7.3:-14985826 | MS.gene23525:CDS |
GAATGTCGACTCCGCGGACG+AGG | 0.536953 | 7.3:+14986141 | None:intergenic |
TGGCGATGACAACAGTGATT+CGG | 0.537975 | 7.3:-14985725 | MS.gene23525:CDS |
GCCATCAGTATGTTAGATGA+AGG | 0.538296 | 7.3:-14975823 | MS.gene23525:CDS |
GTCTTTGGAGGAGCTTGAGG+AGG | 0.539986 | 7.3:-14981837 | MS.gene23525:CDS |
GTGATTGAGAGAGCAAAAGA+AGG | 0.540455 | 7.3:-14975937 | MS.gene23525:CDS |
CCTTGTCATGTCAAGAATGT+TGG | 0.540487 | 7.3:-14976488 | MS.gene23525:CDS |
CTCGACAAGAACATTGGCCC+TGG | 0.544973 | 7.3:-14981687 | MS.gene23525:intron |
GTGAGTCGCTTAAGATAGGA+TGG | 0.549371 | 7.3:+14985887 | None:intergenic |
TAACATGCAATAATCTCCCC+TGG | 0.551097 | 7.3:+14983898 | None:intergenic |
TCCTTCATCTAACATACTGA+TGG | 0.552737 | 7.3:+14975822 | None:intergenic |
GTGAATGCAATTGAGGAAGA+GGG | 0.558261 | 7.3:-14985535 | MS.gene23525:CDS |
CTCGGGCAATGTCTAAGCTG+TGG | 0.560677 | 7.3:-14985993 | MS.gene23525:CDS |
GAACAGACTATTCCATGCTC+TGG | 0.563315 | 7.3:+14983141 | None:intergenic |
AGTGATATTAGAGAAAGATG+TGG | 0.567788 | 7.3:-14978008 | MS.gene23525:CDS |
AGTGAATGTGGAGTCTTTGG+AGG | 0.568324 | 7.3:-14981849 | MS.gene23525:CDS |
AACTCTCAAACAACGAAGAG+AGG | 0.570489 | 7.3:-14983197 | MS.gene23525:CDS |
GTTATTCTGTTGCAGTGAGG+AGG | 0.574934 | 7.3:-14985304 | MS.gene23525:intron |
AGATTACAGAAAACGTTACT+CGG | 0.575640 | 7.3:-14981991 | MS.gene23525:CDS |
GTTGCTGCAAATGTTGCTCT+GGG | 0.579706 | 7.3:-14981920 | MS.gene23525:CDS |
TCGGGCAATGTCTAAGCTGT+GGG | 0.586421 | 7.3:-14985992 | MS.gene23525:CDS |
TCGGACAATTCAATCTTCCA+GGG | 0.587035 | 7.3:-14983915 | MS.gene23525:CDS |
CCAGATGTCTGCCATACAAG+TGG | 0.588396 | 7.3:+14976094 | None:intergenic |
AATTTCAAGACAACAGATGA+GGG | 0.589469 | 7.3:-14976905 | MS.gene23525:CDS |
ATTGAAAGAACCCCAAGAAG+TGG | 0.590316 | 7.3:-14985628 | MS.gene23525:CDS |
TCTCTCCTCGACAAGAACAT+TGG | 0.592808 | 7.3:-14981693 | MS.gene23525:CDS |
TATCAGGGCGCTAGAAGAGT+CGG | 0.596073 | 7.3:-14983934 | MS.gene23525:intron |
GGAGTCTTTGGAGGAGCTTG+AGG | 0.596669 | 7.3:-14981840 | MS.gene23525:CDS |
GAAAACGTTACTCGGAAACA+TGG | 0.599656 | 7.3:-14981983 | MS.gene23525:CDS |
TTCAGTAAACACATGAAAGA+GGG | 0.602870 | 7.3:-14976869 | MS.gene23525:CDS |
ATGCAAATCTTCCTCGTCCG+CGG | 0.607103 | 7.3:-14986152 | MS.gene23525:CDS |
GTTTACATGTTGTAGGAACA+AGG | 0.608786 | 7.3:-14983233 | MS.gene23525:intron |
TAACTTATCCAAGAAAAGGA+AGG | 0.610315 | 7.3:-14975845 | MS.gene23525:CDS |
GAGGATACAAAACGATCCAA+AGG | 0.611415 | 7.3:-14985222 | MS.gene23525:CDS |
CTAAAGGAGATACCAGAGCA+TGG | 0.614779 | 7.3:-14983153 | MS.gene23525:CDS |
AAATTTCAAGACAACAGATG+AGG | 0.617949 | 7.3:-14976906 | MS.gene23525:CDS |
TATTGGATTTCGTACTGACC+GGG | 0.618736 | 7.3:-14986434 | MS.gene23525:CDS |
TTTGTTGAATGTCGACTCCG+CGG | 0.626294 | 7.3:+14986135 | None:intergenic |
TTTGGGCTAAGAACATCGGA+AGG | 0.628067 | 7.3:+14978088 | None:intergenic |
TTTCAAGAGCAAATTGACAA+CGG | 0.632803 | 7.3:-14985782 | MS.gene23525:CDS |
TCTTTGGAGGAGCTTGAGGA+GGG | 0.633385 | 7.3:-14981836 | MS.gene23525:CDS |
CAGGGCCAATGTTCTTGTCG+AGG | 0.634087 | 7.3:+14981688 | None:intergenic |
CAGATGTCTGCCATACAAGT+GGG | 0.638287 | 7.3:+14976095 | None:intergenic |
ATTTAGGTTCTTGACAAACA+GGG | 0.641727 | 7.3:+14976925 | None:intergenic |
GTTAGTAAAAGTGATTTACT+GGG | 0.646285 | 7.3:-14981959 | MS.gene23525:CDS |
TGAATGCAATTGAGGAAGAG+GGG | 0.656118 | 7.3:-14985534 | MS.gene23525:CDS |
GTAAACACATGAAAGAGGGA+CGG | 0.658062 | 7.3:-14976865 | MS.gene23525:CDS |
AGCATGATTGTTAACATGTG+AGG | 0.670588 | 7.3:+14986092 | None:intergenic |
CACAGCTTAGACATTGCCCG+AGG | 0.675080 | 7.3:+14985994 | None:intergenic |
GGAGTATGTTACTCAGCAGG+AGG | 0.710455 | 7.3:-14976148 | MS.gene23525:CDS |
TTACGGACAAACAGTCGACA+CGG | 0.713491 | 7.3:+14985472 | None:intergenic |
CGGACAATTCAATCTTCCAG+GGG | 0.713830 | 7.3:-14983914 | MS.gene23525:CDS |
ACTGAACATGAAGAAAATCG+TGG | 0.715114 | 7.3:-14985661 | MS.gene23525:CDS |
TGTTGTAGGAACAAGGACCA+AGG | 0.722992 | 7.3:-14983226 | MS.gene23525:intron |
GAAAGCAGTGATGATGACAA+TGG | 0.725829 | 7.3:-14985745 | MS.gene23525:CDS |
AGAGCAAATTGACAACGGAG+TGG | 0.732742 | 7.3:-14985777 | MS.gene23525:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 14975795 | 14986682 | 14975795 | ID=MS.gene23525 |
chr7.3 | mRNA | 14975795 | 14986682 | 14975795 | ID=MS.gene23525.t1;Parent=MS.gene23525 |
chr7.3 | exon | 14986672 | 14986682 | 14986672 | ID=MS.gene23525.t1.exon1;Parent=MS.gene23525.t1 |
chr7.3 | CDS | 14986672 | 14986682 | 14986672 | ID=cds.MS.gene23525.t1;Parent=MS.gene23525.t1 |
chr7.3 | exon | 14986369 | 14986483 | 14986369 | ID=MS.gene23525.t1.exon2;Parent=MS.gene23525.t1 |
chr7.3 | CDS | 14986369 | 14986483 | 14986369 | ID=cds.MS.gene23525.t1;Parent=MS.gene23525.t1 |
chr7.3 | exon | 14985454 | 14986193 | 14985454 | ID=MS.gene23525.t1.exon3;Parent=MS.gene23525.t1 |
chr7.3 | CDS | 14985454 | 14986193 | 14985454 | ID=cds.MS.gene23525.t1;Parent=MS.gene23525.t1 |
chr7.3 | exon | 14985180 | 14985311 | 14985180 | ID=MS.gene23525.t1.exon4;Parent=MS.gene23525.t1 |
chr7.3 | CDS | 14985180 | 14985311 | 14985180 | ID=cds.MS.gene23525.t1;Parent=MS.gene23525.t1 |
chr7.3 | exon | 14983861 | 14983950 | 14983861 | ID=MS.gene23525.t1.exon5;Parent=MS.gene23525.t1 |
chr7.3 | CDS | 14983861 | 14983950 | 14983861 | ID=cds.MS.gene23525.t1;Parent=MS.gene23525.t1 |
chr7.3 | exon | 14983126 | 14983240 | 14983126 | ID=MS.gene23525.t1.exon6;Parent=MS.gene23525.t1 |
chr7.3 | CDS | 14983126 | 14983240 | 14983126 | ID=cds.MS.gene23525.t1;Parent=MS.gene23525.t1 |
chr7.3 | exon | 14981688 | 14982011 | 14981688 | ID=MS.gene23525.t1.exon7;Parent=MS.gene23525.t1 |
chr7.3 | CDS | 14981688 | 14982011 | 14981688 | ID=cds.MS.gene23525.t1;Parent=MS.gene23525.t1 |
chr7.3 | exon | 14978832 | 14978896 | 14978832 | ID=MS.gene23525.t1.exon8;Parent=MS.gene23525.t1 |
chr7.3 | CDS | 14978832 | 14978896 | 14978832 | ID=cds.MS.gene23525.t1;Parent=MS.gene23525.t1 |
chr7.3 | exon | 14977967 | 14978138 | 14977967 | ID=MS.gene23525.t1.exon9;Parent=MS.gene23525.t1 |
chr7.3 | CDS | 14977967 | 14978138 | 14977967 | ID=cds.MS.gene23525.t1;Parent=MS.gene23525.t1 |
chr7.3 | exon | 14976850 | 14976954 | 14976850 | ID=MS.gene23525.t1.exon10;Parent=MS.gene23525.t1 |
chr7.3 | CDS | 14976850 | 14976954 | 14976850 | ID=cds.MS.gene23525.t1;Parent=MS.gene23525.t1 |
chr7.3 | exon | 14976661 | 14976762 | 14976661 | ID=MS.gene23525.t1.exon11;Parent=MS.gene23525.t1 |
chr7.3 | CDS | 14976661 | 14976762 | 14976661 | ID=cds.MS.gene23525.t1;Parent=MS.gene23525.t1 |
chr7.3 | exon | 14976373 | 14976546 | 14976373 | ID=MS.gene23525.t1.exon12;Parent=MS.gene23525.t1 |
chr7.3 | CDS | 14976373 | 14976546 | 14976373 | ID=cds.MS.gene23525.t1;Parent=MS.gene23525.t1 |
chr7.3 | exon | 14976095 | 14976226 | 14976095 | ID=MS.gene23525.t1.exon13;Parent=MS.gene23525.t1 |
chr7.3 | CDS | 14976095 | 14976226 | 14976095 | ID=cds.MS.gene23525.t1;Parent=MS.gene23525.t1 |
chr7.3 | exon | 14975795 | 14975959 | 14975795 | ID=MS.gene23525.t1.exon14;Parent=MS.gene23525.t1 |
chr7.3 | CDS | 14975795 | 14975959 | 14975795 | ID=cds.MS.gene23525.t1;Parent=MS.gene23525.t1 |
Gene Sequence |
Protein sequence |