Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50464.t1 | KEH23736.1 | 93.7 | 841 | 52 | 1 | 8 | 847 | 25 | 865 | 0.00E+00 | 1478.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50464.t1 | Q9Y4C8 | 33.0 | 966 | 486 | 19 | 8 | 838 | 2 | 941 | 7.2e-113 | 409.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50464.t1 | A0A072U2X0 | 93.7 | 841 | 52 | 1 | 8 | 847 | 25 | 865 | 0.0e+00 | 1478.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene50464 | 0.809817 | 1.57E-50 | -1.69E-46 |
MS.gene050114 | MS.gene50464 | 0.803833 | 2.89E-49 | -1.69E-46 |
MS.gene051744 | MS.gene50464 | 0.816661 | 4.93E-52 | -1.69E-46 |
MS.gene052052 | MS.gene50464 | 0.806712 | 7.20E-50 | -1.69E-46 |
MS.gene052307 | MS.gene50464 | 0.813418 | 2.59E-51 | -1.69E-46 |
MS.gene052896 | MS.gene50464 | 0.825866 | 3.71E-54 | -1.69E-46 |
MS.gene053226 | MS.gene50464 | 0.812456 | 4.20E-51 | -1.69E-46 |
MS.gene053381 | MS.gene50464 | 0.811497 | 6.80E-51 | -1.69E-46 |
MS.gene055313 | MS.gene50464 | 0.819516 | 1.11E-52 | -1.69E-46 |
MS.gene055513 | MS.gene50464 | 0.84038 | 9.00E-58 | -1.69E-46 |
MS.gene055778 | MS.gene50464 | 0.81435 | 1.61E-51 | -1.69E-46 |
MS.gene056403 | MS.gene50464 | 0.819322 | 1.23E-52 | -1.69E-46 |
MS.gene057102 | MS.gene50464 | 0.812401 | 4.32E-51 | -1.69E-46 |
MS.gene057360 | MS.gene50464 | 0.826932 | 2.07E-54 | -1.69E-46 |
MS.gene057915 | MS.gene50464 | 0.831026 | 2.11E-55 | -1.69E-46 |
MS.gene058037 | MS.gene50464 | 0.805759 | 1.14E-49 | -1.69E-46 |
MS.gene059144 | MS.gene50464 | 0.802636 | 5.11E-49 | -1.69E-46 |
MS.gene059725 | MS.gene50464 | 0.808603 | 2.86E-50 | -1.69E-46 |
MS.gene059774 | MS.gene50464 | 0.81893 | 1.52E-52 | -1.69E-46 |
MS.gene060697 | MS.gene50464 | 0.81769 | 2.89E-52 | -1.69E-46 |
MS.gene060932 | MS.gene50464 | 0.804485 | 2.11E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50464.t1 | MTR_7g094660 | 93.632 | 848 | 53 | 1 | 1 | 847 | 18 | 865 | 0.0 | 1570 |
MS.gene50464.t1 | MTR_7g096260 | 85.282 | 727 | 99 | 2 | 125 | 847 | 1 | 723 | 0.0 | 1206 |
MS.gene50464.t1 | MTR_7g096260 | 85.133 | 713 | 98 | 2 | 139 | 847 | 1 | 709 | 0.0 | 1178 |
MS.gene50464.t1 | MTR_7g094670 | 72.245 | 717 | 141 | 6 | 1 | 710 | 627 | 1292 | 0.0 | 953 |
MS.gene50464.t1 | MTR_7g094670 | 75.098 | 510 | 58 | 4 | 331 | 834 | 1227 | 1673 | 0.0 | 724 |
MS.gene50464.t1 | MTR_2g018390 | 59.768 | 517 | 94 | 6 | 77 | 568 | 13 | 440 | 4.37e-176 | 516 |
MS.gene50464.t1 | MTR_7g096430 | 45.045 | 111 | 57 | 2 | 2 | 110 | 35 | 143 | 2.23e-19 | 86.7 |
MS.gene50464.t1 | MTR_7g102730 | 24.524 | 420 | 241 | 12 | 311 | 710 | 9 | 372 | 1.71e-16 | 84.3 |
MS.gene50464.t1 | MTR_7g102730 | 29.412 | 221 | 132 | 8 | 594 | 802 | 163 | 371 | 2.82e-13 | 73.9 |
MS.gene50464.t1 | MTR_7g102730 | 30.151 | 199 | 117 | 7 | 617 | 807 | 89 | 273 | 4.60e-12 | 70.1 |
MS.gene50464.t1 | MTR_4g085540 | 24.235 | 425 | 230 | 14 | 314 | 710 | 36 | 396 | 4.48e-16 | 83.2 |
MS.gene50464.t1 | MTR_4g085540 | 30.000 | 210 | 126 | 6 | 619 | 817 | 208 | 407 | 3.35e-13 | 73.9 |
MS.gene50464.t1 | MTR_1g019150 | 22.747 | 466 | 291 | 12 | 314 | 760 | 34 | 449 | 2.60e-15 | 80.5 |
MS.gene50464.t1 | MTR_1g061870 | 32.000 | 200 | 114 | 7 | 615 | 807 | 94 | 278 | 7.42e-14 | 75.5 |
MS.gene50464.t1 | MTR_1g061870 | 23.206 | 418 | 253 | 11 | 309 | 712 | 12 | 375 | 6.95e-13 | 72.4 |
MS.gene50464.t1 | MTR_1g061870 | 27.919 | 197 | 112 | 7 | 626 | 807 | 196 | 377 | 6.87e-11 | 66.2 |
MS.gene50464.t1 | MTR_3g029580 | 43.836 | 73 | 41 | 0 | 313 | 385 | 33 | 105 | 1.73e-13 | 68.6 |
MS.gene50464.t1 | MTR_8g092550 | 27.320 | 194 | 121 | 8 | 613 | 795 | 192 | 376 | 5.57e-13 | 72.8 |
MS.gene50464.t1 | MTR_4g117350 | 40.230 | 87 | 52 | 0 | 313 | 399 | 72 | 158 | 1.04e-12 | 67.4 |
MS.gene50464.t1 | MTR_5g071540 | 41.096 | 73 | 43 | 0 | 313 | 385 | 40 | 112 | 3.02e-12 | 65.5 |
MS.gene50464.t1 | MTR_7g013730 | 40.000 | 80 | 48 | 0 | 312 | 391 | 40 | 119 | 1.02e-11 | 66.6 |
MS.gene50464.t1 | MTR_1g097440 | 30.144 | 209 | 126 | 9 | 610 | 810 | 102 | 298 | 1.04e-11 | 68.9 |
MS.gene50464.t1 | MTR_3g099590 | 29.348 | 184 | 120 | 5 | 626 | 806 | 91 | 267 | 1.11e-11 | 67.0 |
MS.gene50464.t1 | MTR_6g040070 | 29.557 | 203 | 123 | 8 | 626 | 817 | 107 | 300 | 1.95e-11 | 68.2 |
MS.gene50464.t1 | MTR_3g095230 | 25.128 | 195 | 125 | 8 | 613 | 795 | 205 | 390 | 2.33e-11 | 67.8 |
MS.gene50464.t1 | MTR_3g095230 | 25.128 | 195 | 125 | 8 | 613 | 795 | 205 | 390 | 2.50e-11 | 67.8 |
MS.gene50464.t1 | MTR_6g040190 | 31.925 | 213 | 120 | 10 | 625 | 829 | 114 | 309 | 2.71e-11 | 67.8 |
MS.gene50464.t1 | MTR_3g075500 | 28.571 | 182 | 115 | 5 | 626 | 800 | 111 | 284 | 3.34e-11 | 65.5 |
MS.gene50464.t1 | MTR_4g088010 | 32.571 | 175 | 92 | 7 | 612 | 780 | 67 | 221 | 8.00e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene50464.t1 | AT4G19610 | 52.625 | 838 | 351 | 13 | 8 | 832 | 2 | 806 | 0.0 | 808 |
MS.gene50464.t1 | AT5G08695 | 45.479 | 752 | 308 | 15 | 8 | 751 | 4 | 661 | 0.0 | 558 |
MS.gene50464.t1 | AT5G05720 | 34.653 | 303 | 132 | 8 | 544 | 836 | 204 | 450 | 1.73e-33 | 135 |
MS.gene50464.t1 | AT5G05720 | 66.234 | 77 | 25 | 1 | 8 | 83 | 2 | 78 | 3.33e-22 | 101 |
MS.gene50464.t1 | AT1G49760 | 24.944 | 445 | 272 | 17 | 314 | 748 | 47 | 439 | 1.23e-16 | 85.1 |
MS.gene50464.t1 | AT1G49760 | 29.279 | 222 | 118 | 9 | 617 | 817 | 215 | 418 | 6.32e-13 | 73.2 |
MS.gene50464.t1 | AT1G49760 | 26.163 | 172 | 114 | 5 | 625 | 795 | 46 | 205 | 7.33e-11 | 66.2 |
MS.gene50464.t1 | AT1G49760 | 24.944 | 445 | 272 | 17 | 314 | 748 | 47 | 439 | 1.23e-16 | 85.1 |
MS.gene50464.t1 | AT1G49760 | 29.279 | 222 | 118 | 9 | 617 | 817 | 215 | 418 | 6.32e-13 | 73.2 |
MS.gene50464.t1 | AT1G49760 | 26.163 | 172 | 114 | 5 | 625 | 795 | 46 | 205 | 7.33e-11 | 66.2 |
MS.gene50464.t1 | AT2G36660 | 25.060 | 415 | 253 | 12 | 314 | 718 | 26 | 392 | 6.65e-16 | 82.4 |
MS.gene50464.t1 | AT2G36660 | 26.899 | 316 | 166 | 12 | 506 | 802 | 114 | 383 | 1.20e-14 | 78.6 |
MS.gene50464.t1 | AT2G36660 | 30.052 | 193 | 121 | 6 | 617 | 807 | 105 | 285 | 4.48e-11 | 67.0 |
MS.gene50464.t1 | AT2G23350 | 23.457 | 405 | 258 | 13 | 312 | 708 | 46 | 406 | 7.92e-16 | 82.4 |
MS.gene50464.t1 | AT2G23350 | 28.440 | 218 | 119 | 7 | 619 | 817 | 220 | 419 | 5.47e-12 | 70.1 |
MS.gene50464.t1 | AT4G34110 | 29.412 | 204 | 121 | 6 | 626 | 817 | 217 | 409 | 5.37e-15 | 79.7 |
MS.gene50464.t1 | AT4G34110 | 28.333 | 240 | 146 | 9 | 610 | 838 | 108 | 332 | 5.75e-11 | 66.6 |
MS.gene50464.t1 | AT1G71770 | 24.155 | 414 | 241 | 13 | 314 | 708 | 61 | 420 | 1.02e-14 | 79.0 |
MS.gene50464.t1 | AT1G71770 | 31.373 | 204 | 127 | 9 | 610 | 808 | 130 | 325 | 4.07e-12 | 70.5 |
MS.gene50464.t1 | AT1G71770 | 24.155 | 414 | 241 | 13 | 314 | 708 | 61 | 420 | 1.02e-14 | 79.0 |
MS.gene50464.t1 | AT1G71770 | 31.373 | 204 | 127 | 9 | 610 | 808 | 130 | 325 | 4.07e-12 | 70.5 |
MS.gene50464.t1 | AT3G16380 | 30.516 | 213 | 134 | 7 | 626 | 835 | 114 | 315 | 1.11e-14 | 78.2 |
MS.gene50464.t1 | AT3G16380 | 27.746 | 173 | 116 | 4 | 625 | 797 | 22 | 185 | 6.60e-12 | 69.3 |
MS.gene50464.t1 | AT4G20030 | 34.694 | 98 | 55 | 1 | 313 | 401 | 41 | 138 | 9.77e-14 | 70.1 |
MS.gene50464.t1 | AT1G34140 | 30.097 | 206 | 126 | 9 | 610 | 810 | 15 | 207 | 1.41e-12 | 70.9 |
MS.gene50464.t1 | AT3G46020 | 39.189 | 74 | 45 | 0 | 312 | 385 | 7 | 80 | 4.62e-11 | 60.8 |
MS.gene50464.t1 | AT2G27330 | 41.429 | 70 | 41 | 0 | 314 | 383 | 23 | 92 | 7.46e-11 | 60.5 |
MS.gene50464.t1 | AT1G22760 | 30.622 | 209 | 122 | 10 | 610 | 808 | 120 | 315 | 9.88e-11 | 65.9 |
Find 155 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATTTATAGACGTTGATTT+TGG | 0.108513 | 7.3:-16407366 | None:intergenic |
CGATCCTCCGCAACATATTT+AGG | 0.148200 | 7.3:-16400825 | None:intergenic |
CATCTGTTGTCTTGAAATTT+AGG | 0.160094 | 7.3:-16408555 | None:intergenic |
TCACGCGACTTGTCGGATTT+AGG | 0.164975 | 7.3:-16401570 | None:intergenic |
GCAAAGATGTTTGGGAAATT+TGG | 0.212543 | 7.3:+16405177 | MS.gene50464:CDS |
TTGTCGGATTTAGGGTTATT+TGG | 0.232410 | 7.3:-16401561 | None:intergenic |
ATAAGGAAACATACTGTATC+AGG | 0.237016 | 7.3:-16404545 | None:intergenic |
AGATTTATTAAAATATTTAA+TGG | 0.238994 | 7.3:-16401069 | None:intergenic |
AGCGAAAGAAGGTGAGAGTT+TGG | 0.239679 | 7.3:+16409521 | MS.gene50464:CDS |
CACGCGACTTGTCGGATTTA+GGG | 0.248240 | 7.3:-16401569 | None:intergenic |
GTTTGGGAAATTTGGTAGTT+TGG | 0.255183 | 7.3:+16405185 | MS.gene50464:CDS |
GAAACTCCTTTCTTATCTTC+TGG | 0.262170 | 7.3:-16401900 | None:intergenic |
AAGTGTTTGCAACGATTTAC+AGG | 0.273150 | 7.3:+16408813 | MS.gene50464:CDS |
ACTCTTGAGCACCACTTCTT+GGG | 0.274073 | 7.3:-16401782 | None:intergenic |
AGAAATTACGTGGTCGAATA+TGG | 0.281071 | 7.3:-16401954 | None:intergenic |
AATGAACTTGCAAAGATGTT+TGG | 0.284821 | 7.3:+16405168 | MS.gene50464:CDS |
TGAAGAAAATCTTGAAGCTT+TGG | 0.290498 | 7.3:-16401384 | None:intergenic |
TTGGGTACAGGGGACTGTTT+TGG | 0.302761 | 7.3:+16408937 | MS.gene50464:intron |
TAATGGCTGCCTGAGCTTCC+TGG | 0.305840 | 7.3:-16401052 | None:intergenic |
GAAAACGCTGCTCGGAAATA+TGG | 0.309799 | 7.3:+16404928 | MS.gene50464:CDS |
TTAAGATTACCAATGAAGTT+TGG | 0.311438 | 7.3:+16409253 | MS.gene50464:CDS |
TTGTACTTTACCATCATTCT+TGG | 0.318291 | 7.3:-16408993 | None:intergenic |
CAGTGTCTCACAGGCTCATT+TGG | 0.318788 | 7.3:+16402170 | MS.gene50464:CDS |
AACTCTTGAGCACCACTTCT+TGG | 0.320155 | 7.3:-16401783 | None:intergenic |
TCTTCATTGTTTGAATATCT+TGG | 0.320981 | 7.3:-16404330 | None:intergenic |
CAACCAAGCAACATTGAATA+AGG | 0.321698 | 7.3:+16401476 | MS.gene50464:CDS |
GGCTCATTTGGTTGTTGATA+AGG | 0.331810 | 7.3:+16402182 | MS.gene50464:CDS |
CTATGATTTCCAAACTTCAT+TGG | 0.343552 | 7.3:-16409262 | None:intergenic |
CTTAATATCACGCGACTTGT+CGG | 0.344684 | 7.3:-16401577 | None:intergenic |
ATAAATGATGAGGTGAATAT+TGG | 0.347994 | 7.3:+16407381 | MS.gene50464:CDS |
GAAGCAAGACCATCAGCTTC+TGG | 0.352871 | 7.3:-16404976 | None:intergenic |
TGATGGAGTAATTTCCGATA+TGG | 0.356739 | 7.3:+16401602 | MS.gene50464:CDS |
ATGAACTTGCAAAGATGTTT+GGG | 0.357412 | 7.3:+16405169 | MS.gene50464:CDS |
CAGAGATGCTCCGTTATACT+TGG | 0.362600 | 7.3:+16407317 | MS.gene50464:intron |
GTCGGACAATTCAATCTTCC+AGG | 0.365242 | 7.3:+16404278 | MS.gene50464:CDS |
GAAGAAAATCTTGAAGCTTT+GGG | 0.367486 | 7.3:-16401383 | None:intergenic |
GGGACATGAAGACAATTCTA+TGG | 0.379712 | 7.3:+16401350 | MS.gene50464:CDS |
ATTAATATAAGCTATTCCTT+TGG | 0.382246 | 7.3:-16402217 | None:intergenic |
ACTCTTGAAATAATCCATAT+CGG | 0.384419 | 7.3:-16401616 | None:intergenic |
TTTGAATATCTTGGTATAGC+TGG | 0.392432 | 7.3:-16404321 | None:intergenic |
AGACAATTATTTAGCCCGTT+TGG | 0.399385 | 7.3:+16409094 | MS.gene50464:CDS |
AATTTAGGTTCTTGACAAAC+AGG | 0.403067 | 7.3:-16408540 | None:intergenic |
GAAATCCGATAAAAGCAAAT+TGG | 0.403342 | 7.3:-16401022 | None:intergenic |
CTAGCATGATTGCTAACATC+TGG | 0.408824 | 7.3:-16401321 | None:intergenic |
GAAGAGCATTTCAGTCAGTT+TGG | 0.410037 | 7.3:+16402147 | MS.gene50464:CDS |
GATCCTCCGCAACATATTTA+GGG | 0.418075 | 7.3:-16400824 | None:intergenic |
AAAATTATCACCTGGCCAAA+CGG | 0.428677 | 7.3:-16409109 | None:intergenic |
TGTTACCTGGCAGCAAACTC+TGG | 0.431858 | 7.3:-16402249 | None:intergenic |
ACTTGTGAGTCGCTTAAGAT+AGG | 0.434521 | 7.3:-16401528 | None:intergenic |
TCTCCTTATTCAATGTTGCT+TGG | 0.434917 | 7.3:-16401479 | None:intergenic |
GGCCAAACCTCTATTCTGTC+TGG | 0.437398 | 7.3:-16407477 | None:intergenic |
ATTATTTAGCCCGTTTGGCC+AGG | 0.451785 | 7.3:+16409099 | MS.gene50464:CDS |
TGCTTGGTTGATGCCATCAT+TGG | 0.453669 | 7.3:-16401463 | None:intergenic |
TCTTGCTTCACGTTATTCTC+TGG | 0.463097 | 7.3:+16404990 | MS.gene50464:CDS |
CTTGTGAATAATAAAGTTGA+TGG | 0.464694 | 7.3:+16405087 | MS.gene50464:CDS |
TGGAGTGAATGTGGAGTCTC+TGG | 0.464866 | 7.3:+16405059 | MS.gene50464:CDS |
GATGAGGTGAATATTGGAAT+TGG | 0.467228 | 7.3:+16407387 | MS.gene50464:CDS |
GCTCAATTTAATGAACATAG+TGG | 0.467944 | 7.3:+16409567 | MS.gene50464:CDS |
AAATTATCACCTGGCCAAAC+GGG | 0.474929 | 7.3:-16409108 | None:intergenic |
GACAACAGATGAGGGTTTGA+GGG | 0.476637 | 7.3:+16408567 | MS.gene50464:CDS |
AAAGCAGCTTTAGCTTCTGC+TGG | 0.476978 | 7.3:-16406686 | None:intergenic |
CTCTCAAGTACCCACTTGTA+TGG | 0.480999 | 7.3:+16409343 | MS.gene50464:CDS |
AGACTAACTTATCTAAGAAA+AGG | 0.482100 | 7.3:+16409598 | MS.gene50464:CDS |
ATTCACTTGAGACTTATCAT+TGG | 0.483343 | 7.3:-16401847 | None:intergenic |
TGTGGAGTATGTTACTCAGC+AGG | 0.483709 | 7.3:+16409297 | MS.gene50464:CDS |
CCACTTGTATGGCAGACATC+TGG | 0.484106 | 7.3:+16409354 | MS.gene50464:CDS |
AGACAACAGATGAGGGTTTG+AGG | 0.485163 | 7.3:+16408566 | MS.gene50464:CDS |
TTCTTCAGGTCATGCAACCT+CGG | 0.490613 | 7.3:+16401400 | MS.gene50464:CDS |
AACAACGAAGAGAGGAAGAA+AGG | 0.496906 | 7.3:+16404468 | MS.gene50464:CDS |
CAGCTCCAGAGTTTGCTGCC+AGG | 0.497473 | 7.3:+16402244 | MS.gene50464:CDS |
TCGTACAGACCAGGAAGCTC+AGG | 0.498415 | 7.3:+16401043 | MS.gene50464:CDS |
CTCTTGAGCACCACTTCTTG+GGG | 0.499235 | 7.3:-16401781 | None:intergenic |
CTCTGTCATGCCAAGAATGA+TGG | 0.499370 | 7.3:+16408983 | MS.gene50464:CDS |
AAGGAAATATGAAGTTTGAA+AGG | 0.501537 | 7.3:+16409643 | MS.gene50464:CDS |
TGGTCGAATATGGCAGATTA+CGG | 0.507492 | 7.3:-16401944 | None:intergenic |
TCTTCAGGTCATGCAACCTC+GGG | 0.508661 | 7.3:+16401401 | MS.gene50464:CDS |
TGATGATGACAACAGTGATT+CGG | 0.509930 | 7.3:+16401674 | MS.gene50464:CDS |
ATGAAGTTTGGAAATCATAG+AGG | 0.511722 | 7.3:+16409265 | MS.gene50464:CDS |
TCAGTTTGGCAGTGTCTCAC+AGG | 0.511966 | 7.3:+16402161 | MS.gene50464:CDS |
AGGAAAGCAGCTGAAGCTAA+AGG | 0.515410 | 7.3:+16404488 | MS.gene50464:CDS |
TAGCATGATTGCTAACATCT+GGG | 0.523415 | 7.3:-16401320 | None:intergenic |
ACTTCAGTTGTATCCAATGA+TGG | 0.526392 | 7.3:+16401450 | MS.gene50464:CDS |
TAACATGCAATAATCTTCCC+TGG | 0.528825 | 7.3:-16404296 | None:intergenic |
TGAGAGTTTGGAGGAACTGC+GGG | 0.532391 | 7.3:+16409533 | MS.gene50464:CDS |
GTGATAGAGAGAGCGAAAGA+AGG | 0.537016 | 7.3:+16409510 | MS.gene50464:CDS |
GCCATCAGTATGTTAGATGA+AGG | 0.538296 | 7.3:+16409624 | MS.gene50464:CDS |
TTTGTTGAATGTCGACTCCA+CGG | 0.539566 | 7.3:-16401276 | None:intergenic |
AAGTAATTGCTTGCGTGTCA+AGG | 0.539623 | 7.3:-16401094 | None:intergenic |
TAGCAATCATGCTAGAGCTA+AGG | 0.540459 | 7.3:+16401329 | MS.gene50464:CDS |
TGCTCCGTTATACTTGGAGT+GGG | 0.544789 | 7.3:+16407323 | MS.gene50464:CDS |
TCAAATCCAGAAGATAAGAA+AGG | 0.551494 | 7.3:+16401894 | MS.gene50464:CDS |
TCCTTCATCTAACATACTGA+TGG | 0.552737 | 7.3:-16409625 | None:intergenic |
AGCAATCATGCTAGAGCTAA+GGG | 0.553000 | 7.3:+16401330 | MS.gene50464:CDS |
GAATGTCGACTCCACGGACG+AGG | 0.554221 | 7.3:-16401270 | None:intergenic |
AAATTTGCCATATGGTGCTA+CGG | 0.556219 | 7.3:+16405143 | MS.gene50464:CDS |
CTCGGGCAATGTCTAAGCTG+TGG | 0.560677 | 7.3:+16401418 | MS.gene50464:CDS |
GAACAGACTATTCCATGCTC+TGG | 0.563315 | 7.3:-16404516 | None:intergenic |
TCGCGTGATATTAAGCATGA+TGG | 0.563587 | 7.3:+16401585 | MS.gene50464:CDS |
ATGCAAATCTTCCTCGTCCG+TGG | 0.564250 | 7.3:+16401259 | MS.gene50464:CDS |
CCAAGAAAAGACCGTTGGAA+AGG | 0.567926 | 7.3:+16401818 | MS.gene50464:CDS |
AACTCTCAAACAACGAAGAG+AGG | 0.570489 | 7.3:+16404460 | MS.gene50464:CDS |
GGAGGCACAAAATGCACTTA+CGG | 0.571985 | 7.3:+16409318 | MS.gene50464:CDS |
TTCAGTGAACACATGAAGGA+GGG | 0.572150 | 7.3:+16408595 | MS.gene50464:CDS |
TATCGGATTTCGTACAGACC+AGG | 0.573714 | 7.3:+16401034 | MS.gene50464:CDS |
GTTATTCTGTTGCAGTGAGG+AGG | 0.574934 | 7.3:+16402119 | MS.gene50464:intron |
GGAGCCCACTCCAAGTATAA+CGG | 0.579796 | 7.3:-16407327 | None:intergenic |
GAAGACCAAGAAAAGACCGT+TGG | 0.580419 | 7.3:+16401813 | MS.gene50464:CDS |
GAATATTGGAATTGGTGAAA+AGG | 0.581272 | 7.3:+16407395 | MS.gene50464:CDS |
GAAAGAAGGTGAGAGTTTGG+AGG | 0.583196 | 7.3:+16409524 | MS.gene50464:CDS |
AAGAATATCAGATGCTGATG+TGG | 0.585807 | 7.3:+16407452 | MS.gene50464:CDS |
TCGGGCAATGTCTAAGCTGT+GGG | 0.586421 | 7.3:+16401419 | MS.gene50464:CDS |
TTTCTGGATCCAGAAGCTGA+TGG | 0.587410 | 7.3:+16404967 | MS.gene50464:CDS |
CCAGATGTCTGCCATACAAG+TGG | 0.588396 | 7.3:-16409354 | None:intergenic |
AATTTCAAGACAACAGATGA+GGG | 0.589469 | 7.3:+16408559 | MS.gene50464:CDS |
TCTAAAAGAACCCCAAGAAG+TGG | 0.590273 | 7.3:+16401771 | MS.gene50464:CDS |
ATGCTCCGTTATACTTGGAG+TGG | 0.592041 | 7.3:+16407322 | MS.gene50464:CDS |
TGGTGAAAAGGATGTCAAGC+GGG | 0.592353 | 7.3:+16407407 | MS.gene50464:CDS |
ACATTTCAGTGAACACATGA+AGG | 0.595177 | 7.3:+16408591 | MS.gene50464:CDS |
TAACTTATCTAAGAAAAGGA+AGG | 0.595740 | 7.3:+16409602 | MS.gene50464:CDS |
AGATTGCAGAAAACGCTGCT+CGG | 0.595905 | 7.3:+16404920 | MS.gene50464:intron |
TATCAGGGCGCTAGAAGAGT+CGG | 0.598556 | 7.3:+16404260 | MS.gene50464:intron |
CACGCAAGCAATTACTTGTG+AGG | 0.600964 | 7.3:+16401100 | MS.gene50464:CDS |
CTTCACACATATCCTCGACC+TGG | 0.603243 | 7.3:-16400796 | None:intergenic |
TGTGGATCCAGACAGAATAG+AGG | 0.604920 | 7.3:+16407470 | MS.gene50464:CDS |
TGAATGCAACTGAGGAAGAG+AGG | 0.607046 | 7.3:+16401865 | MS.gene50464:CDS |
AAGGATACTAAACGATCCAA+AGG | 0.608746 | 7.3:+16402201 | MS.gene50464:CDS |
GTTTAAATGCTGTAGGAACA+AGG | 0.609188 | 7.3:+16404424 | MS.gene50464:intron |
GAATCTCCCTAAATATGTTG+CGG | 0.613317 | 7.3:+16400818 | MS.gene50464:CDS |
CTAAAGGAGATACCAGAGCA+TGG | 0.614779 | 7.3:+16404504 | MS.gene50464:CDS |
AAATTTCAAGACAACAGATG+AGG | 0.617949 | 7.3:+16408558 | MS.gene50464:CDS |
ATCAACGTCTATAAATGATG+AGG | 0.621752 | 7.3:+16407371 | MS.gene50464:CDS |
ATTGGCAACATCCTTTCCAA+CGG | 0.626432 | 7.3:-16401829 | None:intergenic |
TCGGACAATTCAATCTTCCA+GGG | 0.626926 | 7.3:+16404279 | MS.gene50464:CDS |
GTGAGAGTTTGGAGGAACTG+CGG | 0.633716 | 7.3:+16409532 | MS.gene50464:CDS |
TAAGGAAACATACTGTATCA+GGG | 0.633960 | 7.3:-16404544 | None:intergenic |
TCAGTGAACACATGAAGGAG+GGG | 0.635060 | 7.3:+16408596 | MS.gene50464:CDS |
ATTTAGGTTCTTGACAAACA+GGG | 0.641727 | 7.3:-16408539 | None:intergenic |
TCTCCCTAAATATGTTGCGG+AGG | 0.642024 | 7.3:+16400821 | MS.gene50464:CDS |
TTTCAGTGAACACATGAAGG+AGG | 0.645741 | 7.3:+16408594 | MS.gene50464:CDS |
GTCTCAAGTGAATGCAACTG+AGG | 0.646654 | 7.3:+16401857 | MS.gene50464:CDS |
ACTGAACATGAAGAAAATTG+TGG | 0.648518 | 7.3:+16401738 | MS.gene50464:CDS |
TTTCAAGAGTAAAGTGACAA+CGG | 0.650898 | 7.3:+16401629 | MS.gene50464:CDS |
GTGAACACATGAAGGAGGGG+CGG | 0.655433 | 7.3:+16408599 | MS.gene50464:CDS |
AGCATGATTGCTAACATCTG+GGG | 0.658092 | 7.3:-16401319 | None:intergenic |
AGTGAATGTGGAGTCTCTGG+AGG | 0.661423 | 7.3:+16405062 | MS.gene50464:CDS |
TGCTGTAGGAACAAGGACCA+AGG | 0.663501 | 7.3:+16404431 | MS.gene50464:intron |
CAGATGTCTGCCATACAAGT+GGG | 0.667301 | 7.3:-16409353 | None:intergenic |
CACAGCTTAGACATTGCCCG+AGG | 0.675080 | 7.3:-16401417 | None:intergenic |
TTTGGGGTAAGAATATCGGA+AGG | 0.680893 | 7.3:-16407348 | None:intergenic |
AACACTTGTAGCAGTCTCTG+TGG | 0.682171 | 7.3:-16408797 | None:intergenic |
TTGGTGAAAAGGATGTCAAG+CGG | 0.691406 | 7.3:+16407406 | MS.gene50464:CDS |
AGAGTAAAGTGACAACGGAG+TGG | 0.702074 | 7.3:+16401634 | MS.gene50464:CDS |
GGAGTATGTTACTCAGCAGG+AGG | 0.710455 | 7.3:+16409300 | MS.gene50464:CDS |
TTACGGACAAACAGTCGACA+CGG | 0.713491 | 7.3:-16401927 | None:intergenic |
GGTGATATTAGAGAAAGACG+TGG | 0.751833 | 7.3:+16407428 | MS.gene50464:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 16400780 | 16409674 | 16400780 | ID=MS.gene50464 |
chr7.3 | mRNA | 16400780 | 16409674 | 16400780 | ID=MS.gene50464.t1;Parent=MS.gene50464 |
chr7.3 | exon | 16400780 | 16400907 | 16400780 | ID=MS.gene50464.t1.exon1;Parent=MS.gene50464.t1 |
chr7.3 | CDS | 16400780 | 16400907 | 16400780 | ID=cds.MS.gene50464.t1;Parent=MS.gene50464.t1 |
chr7.3 | exon | 16401007 | 16401121 | 16401007 | ID=MS.gene50464.t1.exon2;Parent=MS.gene50464.t1 |
chr7.3 | CDS | 16401007 | 16401121 | 16401007 | ID=cds.MS.gene50464.t1;Parent=MS.gene50464.t1 |
chr7.3 | exon | 16401240 | 16401967 | 16401240 | ID=MS.gene50464.t1.exon3;Parent=MS.gene50464.t1 |
chr7.3 | CDS | 16401240 | 16401967 | 16401240 | ID=cds.MS.gene50464.t1;Parent=MS.gene50464.t1 |
chr7.3 | exon | 16402134 | 16402265 | 16402134 | ID=MS.gene50464.t1.exon4;Parent=MS.gene50464.t1 |
chr7.3 | CDS | 16402134 | 16402265 | 16402134 | ID=cds.MS.gene50464.t1;Parent=MS.gene50464.t1 |
chr7.3 | exon | 16404266 | 16404352 | 16404266 | ID=MS.gene50464.t1.exon5;Parent=MS.gene50464.t1 |
chr7.3 | CDS | 16404266 | 16404352 | 16404266 | ID=cds.MS.gene50464.t1;Parent=MS.gene50464.t1 |
chr7.3 | exon | 16404439 | 16404553 | 16404439 | ID=MS.gene50464.t1.exon6;Parent=MS.gene50464.t1 |
chr7.3 | CDS | 16404439 | 16404553 | 16404439 | ID=cds.MS.gene50464.t1;Parent=MS.gene50464.t1 |
chr7.3 | exon | 16404922 | 16405245 | 16404922 | ID=MS.gene50464.t1.exon7;Parent=MS.gene50464.t1 |
chr7.3 | CDS | 16404922 | 16405245 | 16404922 | ID=cds.MS.gene50464.t1;Parent=MS.gene50464.t1 |
chr7.3 | exon | 16406671 | 16406735 | 16406671 | ID=MS.gene50464.t1.exon8;Parent=MS.gene50464.t1 |
chr7.3 | CDS | 16406671 | 16406735 | 16406671 | ID=cds.MS.gene50464.t1;Parent=MS.gene50464.t1 |
chr7.3 | exon | 16407320 | 16407491 | 16407320 | ID=MS.gene50464.t1.exon9;Parent=MS.gene50464.t1 |
chr7.3 | CDS | 16407320 | 16407491 | 16407320 | ID=cds.MS.gene50464.t1;Parent=MS.gene50464.t1 |
chr7.3 | exon | 16408532 | 16408636 | 16408532 | ID=MS.gene50464.t1.exon10;Parent=MS.gene50464.t1 |
chr7.3 | CDS | 16408532 | 16408636 | 16408532 | ID=cds.MS.gene50464.t1;Parent=MS.gene50464.t1 |
chr7.3 | exon | 16408733 | 16408834 | 16408733 | ID=MS.gene50464.t1.exon11;Parent=MS.gene50464.t1 |
chr7.3 | CDS | 16408733 | 16408834 | 16408733 | ID=cds.MS.gene50464.t1;Parent=MS.gene50464.t1 |
chr7.3 | exon | 16408947 | 16409120 | 16408947 | ID=MS.gene50464.t1.exon12;Parent=MS.gene50464.t1 |
chr7.3 | CDS | 16408947 | 16409120 | 16408947 | ID=cds.MS.gene50464.t1;Parent=MS.gene50464.t1 |
chr7.3 | exon | 16409244 | 16409375 | 16409244 | ID=MS.gene50464.t1.exon13;Parent=MS.gene50464.t1 |
chr7.3 | CDS | 16409244 | 16409375 | 16409244 | ID=cds.MS.gene50464.t1;Parent=MS.gene50464.t1 |
chr7.3 | exon | 16409510 | 16409674 | 16409510 | ID=MS.gene50464.t1.exon14;Parent=MS.gene50464.t1 |
chr7.3 | CDS | 16409510 | 16409674 | 16409510 | ID=cds.MS.gene50464.t1;Parent=MS.gene50464.t1 |
Gene Sequence |
Protein sequence |