AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene76576


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76576.t1 MTR_2g100410 99.310 145 1 0 29 173 1 145 3.80e-104 295
MS.gene76576.t1 MTR_8g015570 90.909 143 13 0 29 171 1 143 6.07e-94 269
MS.gene76576.t1 MTR_8g015570 91.429 105 9 0 29 133 1 105 1.07e-68 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene76576.t1 AT4G29410 72.028 143 40 0 29 171 1 143 3.83e-73 216
MS.gene76576.t1 AT4G29410 72.028 143 40 0 29 171 1 143 3.83e-73 216
MS.gene76576.t1 AT2G19730 72.727 143 39 0 29 171 1 143 3.04e-72 214
MS.gene76576.t1 AT2G19730 72.727 143 39 0 29 171 1 143 3.04e-72 214
MS.gene76576.t1 AT2G19730 72.727 143 39 0 29 171 1 143 3.04e-72 214

Find 32 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTTTCCCATTGCAGTATC+AGG 0.242570 2.3:-3252984 MS.gene76576:intron
TTAAGATTGTAAAGATTATT+AGG 0.248943 2.3:+3250977 None:intergenic
CAAGGTTGAGTGCTGTTAAT+AGG 0.286054 2.3:-3248303 MS.gene76576:CDS
CAGTACCTGGACCACTTGTT+TGG 0.329181 2.3:-3251078 MS.gene76576:CDS
ATACTAACCAGAGTATTTGT+AGG 0.368013 2.3:+3250952 None:intergenic
CTGTTATGAAGAAAGAGTTT+AGG 0.418419 2.3:-3250266 MS.gene76576:CDS
AGTACCTGGACCACTTGTTT+GGG 0.420976 2.3:-3251077 MS.gene76576:CDS
GGCTAAGGCTGTGCAAAATC+AGG 0.425465 2.3:-3250238 MS.gene76576:intron
AGCCTCAGAGTTGCAAAGTC+TGG 0.433352 2.3:-3248280 MS.gene76576:CDS
AAGAAGATGGCAACAGTACC+TGG 0.461908 2.3:-3251091 MS.gene76576:CDS
CAAAGATCAGTCTGTGTTGT+TGG 0.477149 2.3:-3250340 MS.gene76576:CDS
AACTTACCTGATACTGCAAT+GGG 0.478806 2.3:+3252978 None:intergenic
ACTGTAACTATTCAGTCTGC+TGG 0.486689 2.3:-3250363 MS.gene76576:CDS
CTTATTGCTTATGACTCTCT+CGG 0.487123 2.3:-3253006 MS.gene76576:CDS
CTGGCGCTAAGAAGAGAAAC+AGG 0.489005 2.3:-3248261 MS.gene76576:CDS
GAAGAAAGAGTTTAGGAGGA+TGG 0.489919 2.3:-3250259 MS.gene76576:CDS
AAACTTACCTGATACTGCAA+TGG 0.524313 2.3:+3252977 None:intergenic
CTTAACTCCTACAAATACTC+TGG 0.532818 2.3:-3250959 MS.gene76576:intron
TTATGAAGAAAGAGTTTAGG+AGG 0.533464 2.3:-3250263 MS.gene76576:CDS
GATTTGTGAAGCAAAGCAGC+AGG 0.534387 2.3:+3250288 None:intergenic
AAGAAGAGAAACAGGCATGC+AGG 0.536717 2.3:-3248253 MS.gene76576:CDS
AGAGTTTAGGAGGATGGCTA+AGG 0.539424 2.3:-3250253 MS.gene76576:CDS
ATCTCCCAAACAAGTGGTCC+AGG 0.541178 2.3:+3251073 None:intergenic
TTAAGAAGGCGGCTCTTGCA+AGG 0.554765 2.3:-3248321 MS.gene76576:CDS
AGAGCCGCCTTCTTAAGATC+AGG 0.566181 2.3:+3248328 None:intergenic
ACCTGATACTGCAATGGGAA+AGG 0.566562 2.3:+3252983 None:intergenic
CTACAGACCTGATCTTAAGA+AGG 0.570922 2.3:-3248335 MS.gene76576:CDS
CGCCAGACTTTGCAACTCTG+AGG 0.579160 2.3:+3248278 None:intergenic
TTCACGATCTCCCAAACAAG+TGG 0.590177 2.3:+3251067 None:intergenic
TGTTGGCAACCACCAAGCCA+AGG 0.638986 2.3:-3250323 MS.gene76576:CDS
TTGTTTGGGAGATCGTGAAG+AGG 0.651216 2.3:-3251063 MS.gene76576:CDS
CAGACCTGATCTTAAGAAGG+CGG 0.695458 2.3:-3248332 MS.gene76576:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAAAATTTTAAAAAAAAA+TGG - chr2.3:3249835-3249854 MS.gene76576:intron 0.0%
!!! TTATAATTTTTTTTTTTTTA+AGG + chr2.3:3249291-3249310 None:intergenic 0.0%
!! ATTTCTAATTCAAAATAATT+TGG + chr2.3:3251273-3251292 None:intergenic 10.0%
!!! AATTTTTTTTTGTTTATTCA+AGG - chr2.3:3249613-3249632 MS.gene76576:intron 10.0%
!!! ATAATAGTTTTATGATTAAT+GGG - chr2.3:3250361-3250380 MS.gene76576:CDS 10.0%
!!! TAGCAATTTTAATTTTTTTA+TGG - chr2.3:3250827-3250846 MS.gene76576:intron 10.0%
!!! TATAATAGTTTTATGATTAA+TGG - chr2.3:3250360-3250379 MS.gene76576:CDS 10.0%
!! AAACTTGAATTAAAAAATCA+AGG + chr2.3:3252668-3252687 None:intergenic 15.0%
!! ATATGACAAATTTATTTACA+AGG + chr2.3:3248664-3248683 None:intergenic 15.0%
!! TAGTTCAAAAATAAAACATT+TGG - chr2.3:3251365-3251384 MS.gene76576:intron 15.0%
!! TTAAGATTGTAAAGATTATT+AGG + chr2.3:3250296-3250315 None:intergenic 15.0%
!! TTGTAAATAAATTTGTCATA+TGG - chr2.3:3248663-3248682 MS.gene76576:intron 15.0%
!!! AAAATAATTTTGTACCTATA+TGG - chr2.3:3252288-3252307 MS.gene76576:intron 15.0%
!!! AAAATTAATGGTTCAAATTT+TGG + chr2.3:3249599-3249618 None:intergenic 15.0%
!!! AAACTATTTTGAATTATAAG+AGG + chr2.3:3252157-3252176 None:intergenic 15.0%
!!! ACAAATTATTTTGGAATAAT+TGG - chr2.3:3252748-3252767 MS.gene76576:intron 15.0%
!!! AGTAATTTTATCTAATCTAA+TGG - chr2.3:3248637-3248656 MS.gene76576:intron 15.0%
!!! ATTATTCCAAAATAATTTGT+TGG + chr2.3:3252748-3252767 None:intergenic 15.0%
!!! TGTTTTTATTATGGTATAAT+AGG - chr2.3:3250868-3250887 MS.gene76576:intron 15.0%
!!! TTATTCCAAAATAATTTGTT+GGG + chr2.3:3252747-3252766 None:intergenic 15.0%
!!! TTTTTCCTTCTTTTTTTTAA+GGG + chr2.3:3249678-3249697 None:intergenic 15.0%
!!! TTTTTTCCTTCTTTTTTTTA+AGG + chr2.3:3249679-3249698 None:intergenic 15.0%
!!! TTTTTTTTTATATTCTGTGA+TGG - chr2.3:3250408-3250427 MS.gene76576:intron 15.0%
!! AAACATACAGATAATTTGAA+TGG + chr2.3:3251663-3251682 None:intergenic 20.0%
!! AACATACAGATAATTTGAAT+GGG + chr2.3:3251662-3251681 None:intergenic 20.0%
!! ACAAAATGACTTAGATAAAA+TGG + chr2.3:3251889-3251908 None:intergenic 20.0%
!! ACAATAAACAAGAGATAAAA+AGG + chr2.3:3252195-3252214 None:intergenic 20.0%
!! ATAAAAAGGTTAGATTCATT+AGG + chr2.3:3252181-3252200 None:intergenic 20.0%
!! ATCACATTTGATTAAAACTT+AGG + chr2.3:3250716-3250735 None:intergenic 20.0%
!! ATTATTATAGCATAAATGTG+GGG - chr2.3:3248446-3248465 MS.gene76576:intron 20.0%
!! CAGAATATGTATCTATAAAT+TGG + chr2.3:3248743-3248762 None:intergenic 20.0%
!! CATTATTATAGCATAAATGT+GGG - chr2.3:3248445-3248464 MS.gene76576:intron 20.0%
!! GATTTATAGCAAAATGAAAT+TGG + chr2.3:3250009-3250028 None:intergenic 20.0%
!! TTAGAAATATTCACGATAAT+TGG - chr2.3:3251285-3251304 MS.gene76576:intron 20.0%
!! TTATTATGGTATAATAGGTT+TGG - chr2.3:3250873-3250892 MS.gene76576:intron 20.0%
!! TTTGCATCTTAAAGTATAAT+GGG - chr2.3:3250474-3250493 MS.gene76576:intron 20.0%
!!! AGTTGAAAATTGTTTTGAAT+TGG - chr2.3:3251241-3251260 MS.gene76576:intron 20.0%
!!! CTTACTTCATGTTTTTATTA+TGG - chr2.3:3250859-3250878 MS.gene76576:intron 20.0%
!!! GTTTTATTTTTGAACTAATC+CGG + chr2.3:3251362-3251381 None:intergenic 20.0%
!!! GTTTTCATATTTCACAATAT+TGG - chr2.3:3251145-3251164 MS.gene76576:intron 20.0%
!!! TAGTTTTTTTCTCCATAAAT+AGG - chr2.3:3249154-3249173 MS.gene76576:intron 20.0%
!!! TTATCTTTGATTTTCAGATT+TGG - chr2.3:3250111-3250130 MS.gene76576:intron 20.0%
!!! TTTTCACATTTTCCTATTTA+TGG + chr2.3:3249169-3249188 None:intergenic 20.0%
!!! TTTTTTGTTTATTCAAGGAA+AGG - chr2.3:3249618-3249637 MS.gene76576:intron 20.0%
! AAAATTCGAACAAAGAAAGA+GGG + chr2.3:3251441-3251460 None:intergenic 25.0%
! AAATGTGAAAATATGACTGT+TGG - chr2.3:3249178-3249197 MS.gene76576:intron 25.0%
! ACATTATGAAGAGATCAAAA+GGG + chr2.3:3252444-3252463 None:intergenic 25.0%
! ATATAAGAAGAATCCTTATG+TGG - chr2.3:3252345-3252364 MS.gene76576:intron 25.0%
! ATATTCATCATTAGTATGAG+CGG - chr2.3:3248406-3248425 MS.gene76576:intron 25.0%
! ATCTTCCCTTAAAAAAAAGA+AGG - chr2.3:3249670-3249689 MS.gene76576:intron 25.0%
! ATTCATATAGTTGTCATTCT+AGG - chr2.3:3251180-3251199 MS.gene76576:intron 25.0%
! ATTTACACAGATAAATCACA+TGG + chr2.3:3251965-3251984 None:intergenic 25.0%
! CCACATTTATGCTATAATAA+TGG + chr2.3:3248447-3248466 None:intergenic 25.0%
! CCATTATTATAGCATAAATG+TGG - chr2.3:3248444-3248463 MS.gene76576:intron 25.0%
! CTTTGCATCTTAAAGTATAA+TGG - chr2.3:3250473-3250492 MS.gene76576:intron 25.0%
! GGATTCTTCTTATATGTTAA+CGG + chr2.3:3252340-3252359 None:intergenic 25.0%
! TAAATGCAAAATAGCATATG+AGG + chr2.3:3252483-3252502 None:intergenic 25.0%
! TAAGCATTTATTATACTGCT+TGG + chr2.3:3250669-3250688 None:intergenic 25.0%
! TATAAGAAGAATCCTTATGT+GGG - chr2.3:3252346-3252365 MS.gene76576:intron 25.0%
! TGATAACTGAAATGTTGTAA+TGG + chr2.3:3248375-3248394 None:intergenic 25.0%
!! AATAGTTACAGTTTTCTTGT+TGG + chr2.3:3250899-3250918 None:intergenic 25.0%
!! AATATAATTTGTAAGGAGTC+TGG - chr2.3:3249010-3249029 MS.gene76576:intron 25.0%
!! CGCTTTTAACATAAGATATT+TGG - chr2.3:3248491-3248510 MS.gene76576:intron 25.0%
!!! AAGTTTTTATTTAGAGAAGC+TGG - chr2.3:3252682-3252701 MS.gene76576:intron 25.0%
!!! AGTTTTAAGTTACAAAAGAG+AGG + chr2.3:3251623-3251642 None:intergenic 25.0%
!!! ATGAATACACTTTTGAAACA+AGG - chr2.3:3249363-3249382 MS.gene76576:intron 25.0%
!!! ATTTTCGTTTTGTGCTTTTT+AGG - chr2.3:3250087-3250106 MS.gene76576:intron 25.0%
!!! GAAAATTGTTTTGAATTGGT+TGG - chr2.3:3251245-3251264 MS.gene76576:intron 25.0%
!!! GTATGATTTTTCAGAAAATG+CGG + chr2.3:3249337-3249356 None:intergenic 25.0%
!!! GTCATCTTGTATTTTTTTCA+GGG - chr2.3:3248613-3248632 MS.gene76576:intron 25.0%
!!! TATGATTTTTCAGAAAATGC+GGG + chr2.3:3249336-3249355 None:intergenic 25.0%
!!! TCATCTTGTATTTTTTTCAG+GGG - chr2.3:3248614-3248633 MS.gene76576:intron 25.0%
!!! TCTTTTTTGGTTAAAGAGTT+TGG - chr2.3:3250236-3250255 MS.gene76576:intron 25.0%
!!! TGTCATCTTGTATTTTTTTC+AGG - chr2.3:3248612-3248631 MS.gene76576:intron 25.0%
!!! TTTTCGTTTTGTGCTTTTTA+GGG - chr2.3:3250088-3250107 MS.gene76576:intron 25.0%
AAAAACTATGCTCAGAGTTT+GGG + chr2.3:3249079-3249098 None:intergenic 30.0%
AAAATGTTCAAAAACAGTGC+TGG - chr2.3:3248772-3248791 MS.gene76576:intron 30.0%
AAATTCGAACAAAGAAAGAG+GGG + chr2.3:3251440-3251459 None:intergenic 30.0%
AGATAAATCACATGGCAATT+AGG + chr2.3:3251957-3251976 None:intergenic 30.0%
ATATAAGATGAATCCCTATG+TGG - chr2.3:3252048-3252067 MS.gene76576:intron 30.0%
ATTTACACAGATAAATCGCA+TGG + chr2.3:3252267-3252286 None:intergenic 30.0%
ATTTCATTGAAGAAACCCAA+AGG + chr2.3:3252598-3252617 None:intergenic 30.0%
CTAGATCTGTATTGTGTTAT+AGG - chr2.3:3250141-3250160 MS.gene76576:intron 30.0%
CTGTTATGAAGAAAGAGTTT+AGG - chr2.3:3251004-3251023 MS.gene76576:CDS 30.0%
CTTGTTGAAATTAGTGAAGT+TGG - chr2.3:3250750-3250769 MS.gene76576:intron 30.0%
GAAAATTCGAACAAAGAAAG+AGG + chr2.3:3251442-3251461 None:intergenic 30.0%
GAATTAGTGGTTGGAAAATT+CGG - chr2.3:3251111-3251130 MS.gene76576:intron 30.0%
GACATTATGAAGAGATCAAA+AGG + chr2.3:3252445-3252464 None:intergenic 30.0%
GGATTCATCTTATATGTTAG+AGG + chr2.3:3252043-3252062 None:intergenic 30.0%
TAAAAACTATGCTCAGAGTT+TGG + chr2.3:3249080-3249099 None:intergenic 30.0%
TATAAGATGAATCCCTATGT+GGG - chr2.3:3252049-3252068 MS.gene76576:intron 30.0%
TCCAAATCCAAAGCAAATTA+GGG - chr2.3:3249980-3249999 MS.gene76576:intron 30.0%
TGACTACTGAGAAATATACA+AGG - chr2.3:3248982-3249001 MS.gene76576:intron 30.0%
TGCAATATTATTGTTACGCT+TGG - chr2.3:3251518-3251537 MS.gene76576:intron 30.0%
TTATGAAGAAAGAGTTTAGG+AGG - chr2.3:3251007-3251026 MS.gene76576:CDS 30.0%
TTCAATTATCAGATGTCGAA+AGG + chr2.3:3251843-3251862 None:intergenic 30.0%
TTGAATTATAAGAGGTCACT+AGG + chr2.3:3252149-3252168 None:intergenic 30.0%
! AAGCTCAACAAAAAAGTATG+AGG - chr2.3:3248576-3248595 MS.gene76576:intron 30.0%
! AGTCATTTGCTGCAAAATAA+AGG + chr2.3:3252713-3252732 None:intergenic 30.0%
! ATACTAACCAGAGTATTTGT+AGG + chr2.3:3250321-3250340 None:intergenic 30.0%
! ATCTAGTCAAATCTTTTGCT+AGG - chr2.3:3251211-3251230 MS.gene76576:intron 30.0%
! ATTTTGTACCTATATGGACT+AGG - chr2.3:3252294-3252313 MS.gene76576:intron 30.0%
! GGAGTGGAATATAATTTGTA+AGG - chr2.3:3249003-3249022 MS.gene76576:intron 30.0%
! TAATAATTCCCTCGTTTTGT+TGG - chr2.3:3249106-3249125 MS.gene76576:intron 30.0%
! TCAAATTAGCTCATCGATTA+AGG + chr2.3:3252875-3252894 None:intergenic 30.0%
! TGAAATATACTTGTTACGCT+TGG - chr2.3:3252378-3252397 MS.gene76576:intron 30.0%
! TGAAATTTACTTGTTACGCT+TGG - chr2.3:3251775-3251794 MS.gene76576:intron 30.0%
!! AGATATTTGGTTGATGAAGA+TGG - chr2.3:3248504-3248523 MS.gene76576:intron 30.0%
!! AGGAAAGGCATTAAAGATAT+TGG - chr2.3:3249633-3249652 MS.gene76576:intron 30.0%
!! ATGATTTTTCAGAAAATGCG+GGG + chr2.3:3249335-3249354 None:intergenic 30.0%
!! CATTTTAATGGAAATACTGC+CGG - chr2.3:3251340-3251359 MS.gene76576:intron 30.0%
!! GTTGTTTCAGTGCATTTTAA+TGG - chr2.3:3251328-3251347 MS.gene76576:intron 30.0%
!!! ATGGCTGTTTTTGTTGTTAA+AGG - chr2.3:3250427-3250446 MS.gene76576:intron 30.0%
!!! TGGCTGTTTTTGTTGTTAAA+GGG - chr2.3:3250428-3250447 MS.gene76576:intron 30.0%
AAACTTACCTGATACTGCAA+TGG + chr2.3:3248296-3248315 None:intergenic 35.0%
AACCAGATCACCAGAAAAAA+GGG + chr2.3:3251932-3251951 None:intergenic 35.0%
AACTTACCTGATACTGCAAT+GGG + chr2.3:3248295-3248314 None:intergenic 35.0%
AATATGTCACAGTGCTATGA+AGG - chr2.3:3248831-3248850 MS.gene76576:intron 35.0%
ACTGAGAAATATACAAGGAG+TGG - chr2.3:3248987-3249006 MS.gene76576:intron 35.0%
AGAACCATGCTAGATTGATA+TGG - chr2.3:3248699-3248718 MS.gene76576:intron 35.0%
AGCACAAAACGAAAATACCT+TGG + chr2.3:3250083-3250102 None:intergenic 35.0%
ATAAAACATTTGGAAACGCG+TGG - chr2.3:3251375-3251394 MS.gene76576:intron 35.0%
ATGATGAATCCAACAAAACG+AGG + chr2.3:3249118-3249137 None:intergenic 35.0%
ATTGCAGTATCAGGTAAGTT+TGG - chr2.3:3248295-3248314 MS.gene76576:CDS 35.0%
CACTGAATAAACCCAACAAA+TGG + chr2.3:3251500-3251519 None:intergenic 35.0%
CATAGCACTGTGACATATTA+GGG + chr2.3:3248830-3248849 None:intergenic 35.0%
CTATGAAACCATCATACACA+TGG + chr2.3:3250807-3250826 None:intergenic 35.0%
CTTAACTCCTACAAATACTC+TGG - chr2.3:3250311-3250330 MS.gene76576:CDS 35.0%
CTTATTGCTTATGACTCTCT+CGG - chr2.3:3248264-3248283 MS.gene76576:CDS 35.0%
GAAGAAGAAGAAGAAGAAGA+TGG - chr2.3:3250166-3250185 MS.gene76576:intron 35.0%
GCAGTTATGCTTATTCAATC+TGG - chr2.3:3248887-3248906 MS.gene76576:intron 35.0%
GCATTCAATCATATTAGCAG+TGG + chr2.3:3252537-3252556 None:intergenic 35.0%
GTAAGAAGGATCCATTTGTT+GGG - chr2.3:3251486-3251505 MS.gene76576:intron 35.0%
GTCCAAATCCAAAGCAAATT+AGG - chr2.3:3249979-3249998 MS.gene76576:intron 35.0%
TAAATCGCATGGTAGCAATT+AGG + chr2.3:3252256-3252275 None:intergenic 35.0%
TATGATTGAATGCTTCCCAT+CGG - chr2.3:3252544-3252563 MS.gene76576:intron 35.0%
TCATAGCACTGTGACATATT+AGG + chr2.3:3248831-3248850 None:intergenic 35.0%
TCATTGAAGAAACCCACATA+AGG + chr2.3:3251758-3251777 None:intergenic 35.0%
TCATTGAAGAAACCCACATA+GGG + chr2.3:3251758-3251777 None:intergenic 35.0%
TCCACACAAAGAACAAGAAT+CGG + chr2.3:3251093-3251112 None:intergenic 35.0%
TGATGAATCCAACAAAACGA+GGG + chr2.3:3249117-3249136 None:intergenic 35.0%
TGTAAGAAGGATCCATTTGT+TGG - chr2.3:3251485-3251504 MS.gene76576:intron 35.0%
TGTTAATGCCATGTGTATGA+TGG - chr2.3:3250796-3250815 MS.gene76576:intron 35.0%
TGTTCTTTGTGTGGAATTAG+TGG - chr2.3:3251098-3251117 MS.gene76576:CDS 35.0%
TGTTGTTAAAGGGTTCTGTT+TGG - chr2.3:3250438-3250457 MS.gene76576:intron 35.0%
TTAAAAGCGAAGCTAGATCA+AGG + chr2.3:3248480-3248499 None:intergenic 35.0%
TTCAATCATATTAGCAGTGG+TGG + chr2.3:3252534-3252553 None:intergenic 35.0%
TTCATTGAAGAAACCCACAT+AGG + chr2.3:3251759-3251778 None:intergenic 35.0%
TTGGGCAAACATTGAAAGAA+AGG + chr2.3:3249061-3249080 None:intergenic 35.0%
! AACCTGGTCTCTATTTTATC+TGG - chr2.3:3252218-3252237 MS.gene76576:intron 35.0%
! AATACCTTGGATTGTTGTTG+AGG + chr2.3:3250070-3250089 None:intergenic 35.0%
! ATAATTTGAATGGGAGCGTA+AGG + chr2.3:3251653-3251672 None:intergenic 35.0%
! TAATTTGAATGGGAGCGTAA+GGG + chr2.3:3251652-3251671 None:intergenic 35.0%
! TGCTGCCCAACAAATTATTT+TGG - chr2.3:3252739-3252758 MS.gene76576:intron 35.0%
!! ACCCTAATTTGCTTTGGATT+TGG + chr2.3:3249984-3250003 None:intergenic 35.0%
!! ATAATTTGTTGGGCAGCATT+TGG + chr2.3:3252737-3252756 None:intergenic 35.0%
!! TAATTTGTTGGGCAGCATTT+GGG + chr2.3:3252736-3252755 None:intergenic 35.0%
!! TTGGAAACCCTAATTTGCTT+TGG + chr2.3:3249990-3250009 None:intergenic 35.0%
!!! AACCTAACATCCCTTTTTTC+TGG - chr2.3:3251919-3251938 MS.gene76576:intron 35.0%
!!! GAAGAGGAACAACTCTTTTT+TGG - chr2.3:3250223-3250242 MS.gene76576:intron 35.0%
AACACGTAAGAAGGTTCCTT+TGG - chr2.3:3252579-3252598 MS.gene76576:intron 40.0%
AACGCCATATCAATCTAGCA+TGG + chr2.3:3248706-3248725 None:intergenic 40.0%
ACACGTAAGAAGGTTCCTTT+GGG - chr2.3:3252580-3252599 MS.gene76576:intron 40.0%
ACGTAAGAAGAATCCCTATG+TGG - chr2.3:3251742-3251761 MS.gene76576:intron 40.0%
ACTGTAACTATTCAGTCTGC+TGG - chr2.3:3250907-3250926 MS.gene76576:intron 40.0%
ATTCAACTAGTGTTACCCAG+CGG - chr2.3:3251704-3251723 MS.gene76576:intron 40.0%
CAAACACATATAGCCCACTA+AGG + chr2.3:3249942-3249961 None:intergenic 40.0%
CAAAGAAAGAGGGGTTCAAA+TGG + chr2.3:3251431-3251450 None:intergenic 40.0%
CAAAGATCAGTCTGTGTTGT+TGG - chr2.3:3250930-3250949 MS.gene76576:intron 40.0%
CAACCAGATCACCAGAAAAA+AGG + chr2.3:3251933-3251952 None:intergenic 40.0%
CACCAGAAAAAAGGGATGTT+AGG + chr2.3:3251924-3251943 None:intergenic 40.0%
CACCAGATAAAATAGAGACC+AGG + chr2.3:3252223-3252242 None:intergenic 40.0%
CCACACAAAGAACAAGAATC+GGG + chr2.3:3251092-3251111 None:intergenic 40.0%
CGTAAGAAGAATCCCTATGT+GGG - chr2.3:3251743-3251762 MS.gene76576:intron 40.0%
CTACAGACCTGATCTTAAGA+AGG - chr2.3:3252935-3252954 MS.gene76576:intron 40.0%
CTGGGTAACACTAGTTGAAT+CGG + chr2.3:3251704-3251723 None:intergenic 40.0%
CTTTGTGTGGAATTAGTGGT+TGG - chr2.3:3251102-3251121 MS.gene76576:CDS 40.0%
GAAGAAAGAGTTTAGGAGGA+TGG - chr2.3:3251011-3251030 MS.gene76576:CDS 40.0%
GAGTGAGATTTGAGAAGAAG+AGG + chr2.3:3250046-3250065 None:intergenic 40.0%
GGATCCTTCTTACATGTTAG+AGG + chr2.3:3251479-3251498 None:intergenic 40.0%
GTTGGAAAATTCGGCTAAGT+TGG - chr2.3:3251120-3251139 MS.gene76576:intron 40.0%
TAATGGAGACCAGTTTCCAT+AGG + chr2.3:3248358-3248377 None:intergenic 40.0%
TAGTAGTTATCTGCAACCTG+AGG + chr2.3:3252918-3252937 None:intergenic 40.0%
TGAGCCTCTAACATGTAAGA+AGG - chr2.3:3251472-3251491 MS.gene76576:intron 40.0%
TGAGCTGTTAACACGTAAGA+AGG - chr2.3:3252570-3252589 MS.gene76576:intron 40.0%
! AAAGAGAGGCACGCTATTAA+CGG + chr2.3:3251609-3251628 None:intergenic 40.0%
! CAAGGTTGAGTGCTGTTAAT+AGG - chr2.3:3252967-3252986 MS.gene76576:intron 40.0%
! TCTTGTTTATTGTGCGAACC+TGG - chr2.3:3252202-3252221 MS.gene76576:intron 40.0%
!!! ATCCCTTTTTTCTGGTGATC+TGG - chr2.3:3251927-3251946 MS.gene76576:intron 40.0%
AAGAAGAGAAACAGGCATGC+AGG - chr2.3:3253017-3253036 MS.gene76576:CDS 45.0%
AAGAAGATGGCAACAGTACC+TGG - chr2.3:3250179-3250198 MS.gene76576:intron 45.0%
ACACCAAATCTTACTGGCAG+AGG + chr2.3:3252003-3252022 None:intergenic 45.0%
ACCTGATACTGCAATGGGAA+AGG + chr2.3:3248290-3248309 None:intergenic 45.0%
AGAATCTTACATGCCGTGTC+GGG - chr2.3:3249913-3249932 MS.gene76576:intron 45.0%
AGAGTTTAGGAGGATGGCTA+AGG - chr2.3:3251017-3251036 MS.gene76576:CDS 45.0%
AGCACTGTGACATATTAGGG+AGG + chr2.3:3248827-3248846 None:intergenic 45.0%
AGTACCTGGACCACTTGTTT+GGG - chr2.3:3250193-3250212 MS.gene76576:intron 45.0%
CAGAATCTTACATGCCGTGT+CGG - chr2.3:3249912-3249931 MS.gene76576:intron 45.0%
CAGACCTGATCTTAAGAAGG+CGG - chr2.3:3252938-3252957 MS.gene76576:intron 45.0%
CCCGATTCTTGTTCTTTGTG+TGG - chr2.3:3251089-3251108 MS.gene76576:CDS 45.0%
CTCTCCTCAACAACAATCCA+AGG - chr2.3:3250063-3250082 MS.gene76576:intron 45.0%
GATTTGTGAAGCAAAGCAGC+AGG + chr2.3:3250985-3251004 None:intergenic 45.0%
GGGGAAAACCTAGTCCATAT+AGG + chr2.3:3252305-3252324 None:intergenic 45.0%
GTTAACAGCTCATCACCGAT+GGG + chr2.3:3252562-3252581 None:intergenic 45.0%
GTTAATAGCTCATCACCGCT+GGG + chr2.3:3251722-3251741 None:intergenic 45.0%
TGGGGAACACCAAATCTTAC+TGG + chr2.3:3252009-3252028 None:intergenic 45.0%
TGTTAACAGCTCATCACCGA+TGG + chr2.3:3252563-3252582 None:intergenic 45.0%
TGTTAATAGCTCATCACCGC+TGG + chr2.3:3251723-3251742 None:intergenic 45.0%
TTAACCTACTGCGACTCCTA+TGG - chr2.3:3248339-3248358 MS.gene76576:CDS 45.0%
TTCACGATCTCCCAAACAAG+TGG + chr2.3:3250206-3250225 None:intergenic 45.0%
TTGTTTGGGAGATCGTGAAG+AGG - chr2.3:3250207-3250226 MS.gene76576:intron 45.0%
! GATTTGGACCGCTGGATTTT+GGG + chr2.3:3249968-3249987 None:intergenic 45.0%
! GTTTGAAGCCCAAAATCCAG+CGG - chr2.3:3249957-3249976 MS.gene76576:intron 45.0%
! TAAGGAGTCTGGTTCGTTTG+AGG - chr2.3:3249021-3249040 MS.gene76576:intron 45.0%
!! TGTTCAAAAACAGTGCTGGC+TGG - chr2.3:3248776-3248795 MS.gene76576:intron 45.0%
!!! CTTGTTTTGCTTCCTTGGCT+TGG + chr2.3:3250962-3250981 None:intergenic 45.0%
!! AATAAACAAAAAAAAATTAA+TGG + chr2.3:3249611-3249630 None:intergenic 5.0%
ACTGCGACTCCTATGGAAAC+TGG - chr2.3:3248346-3248365 MS.gene76576:CDS 50.0%
AGAGCCGCCTTCTTAAGATC+AGG + chr2.3:3252945-3252964 None:intergenic 50.0%
AGCCTCAGAGTTGCAAAGTC+TGG - chr2.3:3252990-3253009 MS.gene76576:CDS 50.0%
ATCTCCCAAACAAGTGGTCC+AGG + chr2.3:3250200-3250219 None:intergenic 50.0%
CAGTACCTGGACCACTTGTT+TGG - chr2.3:3250192-3250211 MS.gene76576:intron 50.0%
CTGGCGCTAAGAAGAGAAAC+AGG - chr2.3:3253009-3253028 MS.gene76576:CDS 50.0%
GCACCTCTGCCAGTAAGATT+TGG - chr2.3:3251997-3252016 MS.gene76576:intron 50.0%
GCCTTTCCCATTGCAGTATC+AGG - chr2.3:3248286-3248305 MS.gene76576:CDS 50.0%
GCTATTAACGGTGCAGGCAA+AGG + chr2.3:3251597-3251616 None:intergenic 50.0%
GGCTAAGGCTGTGCAAAATC+AGG - chr2.3:3251032-3251051 MS.gene76576:CDS 50.0%
GTTAACGGCTCATCACTGCT+GGG + chr2.3:3252325-3252344 None:intergenic 50.0%
GTTAGAGGCTCATCACAGCA+AGG + chr2.3:3251464-3251483 None:intergenic 50.0%
GTTAGAGGCTCATCACTGCT+GGG + chr2.3:3252028-3252047 None:intergenic 50.0%
GTTTCCATAGGAGTCGCAGT+AGG + chr2.3:3248346-3248365 None:intergenic 50.0%
TGCAGGCAAAGGAGATCAGA+AGG + chr2.3:3251586-3251605 None:intergenic 50.0%
TGTTAACGGCTCATCACTGC+TGG + chr2.3:3252326-3252345 None:intergenic 50.0%
TGTTAGAGGCTCATCACTGC+TGG + chr2.3:3252029-3252048 None:intergenic 50.0%
TTAACGGCTCATCACTGCTG+GGG + chr2.3:3252324-3252343 None:intergenic 50.0%
TTAAGAAGGCGGCTCTTGCA+AGG - chr2.3:3252949-3252968 MS.gene76576:intron 50.0%
TTAGAGGCTCATCACTGCTG+GGG + chr2.3:3252027-3252046 None:intergenic 50.0%
! GGATTTGGACCGCTGGATTT+TGG + chr2.3:3249969-3249988 None:intergenic 50.0%
! TTGCTTTGGATTTGGACCGC+TGG + chr2.3:3249976-3249995 None:intergenic 50.0%
!!! GCAGGCTTGTTTTGCTTCCT+TGG + chr2.3:3250967-3250986 None:intergenic 50.0%
!!! GTTTTGCTTCCTTGGCTTGG+TGG + chr2.3:3250959-3250978 None:intergenic 50.0%
AGGCACGCTATTAACGGTGC+AGG + chr2.3:3251603-3251622 None:intergenic 55.0%
CGCCAGACTTTGCAACTCTG+AGG + chr2.3:3252995-3253014 None:intergenic 55.0%
TGTTGGCAACCACCAAGCCA+AGG - chr2.3:3250947-3250966 MS.gene76576:intron 55.0%
TTGCGTGTGTGATGTGCCTC+AGG - chr2.3:3252899-3252918 MS.gene76576:intron 55.0%
CCCACTAAGGTGACCCGACA+CGG + chr2.3:3249929-3249948 None:intergenic 60.0%
CCGTGTCGGGTCACCTTAGT+GGG - chr2.3:3249926-3249945 MS.gene76576:intron 60.0%
GCCGTGTCGGGTCACCTTAG+TGG - chr2.3:3249925-3249944 MS.gene76576:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 3248246 3253046 3248246 ID=MS.gene76576
chr2.3 mRNA 3248246 3253046 3248246 ID=MS.gene76576.t1;Parent=MS.gene76576
chr2.3 exon 3252985 3253046 3252985 ID=MS.gene76576.t1.exon1;Parent=MS.gene76576.t1
chr2.3 CDS 3252985 3253046 3252985 ID=cds.MS.gene76576.t1;Parent=MS.gene76576.t1
chr2.3 exon 3250960 3251129 3250960 ID=MS.gene76576.t1.exon2;Parent=MS.gene76576.t1
chr2.3 CDS 3250960 3251129 3250960 ID=cds.MS.gene76576.t1;Parent=MS.gene76576.t1
chr2.3 exon 3250239 3250402 3250239 ID=MS.gene76576.t1.exon3;Parent=MS.gene76576.t1
chr2.3 CDS 3250239 3250402 3250239 ID=cds.MS.gene76576.t1;Parent=MS.gene76576.t1
chr2.3 exon 3248246 3248371 3248246 ID=MS.gene76576.t1.exon4;Parent=MS.gene76576.t1
chr2.3 CDS 3248246 3248371 3248246 ID=cds.MS.gene76576.t1;Parent=MS.gene76576.t1
Gene Sequence

>MS.gene76576

ATGCATGTTTTAGAGAAGCTTATTGCTTATGACTCTCTCGGCCTTTCCCATTGCAGTATCAGGTAAGTTTGGATCTGTGCGAAGCGAACATGCTTAACCTACTGCGACTCCTATGGAAACTGGTCTCCATTACAACATTTCAGTTATCATGACATGTTCAATATTCATCATTAGTATGAGCGGTAGCAATTAGAATTGCCATTATTATAGCATAAATGTGGGGATTGAAATCCTTGATCTAGCTTCGCTTTTAACATAAGATATTTGGTTGATGAAGATGGATTTGACTACAATACTACATAATGATAGTATCATTTTTAAGAGACAACAAAGCTCAACAAAAAAGTATGAGGTTTTGTATGACTGTGTCATCTTGTATTTTTTTCAGGGGAGTAATTTTATCTAATCTAATGGTCCTTGTAAATAAATTTGTCATATGGAGAGACTATTCAAAGAACCATGCTAGATTGATATGGCGTTTTGTGTAATTTCATCCAATTTATAGATACATATTCTGATCTCAAATAAAATGTTCAAAAACAGTGCTGGCTGGTTTAATTGTGCATACTGTATACTAACCTCCCTAATATGTCACAGTGCTATGAAGGAATTCAAAACTATGATAACTATTATATTTTGACGCAGTTATGCTTATTCAATCTGGAACTTCTAAGTTCATTATAAGAAAATTTAGAAGCATAGTTAGTTAGTTCTATATAAGCTTCATAGATTAATTTGACTACTGAGAAATATACAAGGAGTGGAATATAATTTGTAAGGAGTCTGGTTCGTTTGAGGAACTTTGTTATGATCCTTTCTTTCAATGTTTGCCCAAACTCTGAGCATAGTTTTTAACTGTTTAATAATTCCCTCGTTTTGTTGGATTCATCATGAAAATCGTAGTTAATTAGTTTTTTTCTCCATAAATAGGAAAATGTGAAAATATGACTGTTGGATTCATCATGAAAATCGTAGTTAATTAGTTTTTTTCTCCATAAATAGGAAAATGTGAAAATATGACAACACAAATAGTTATAAACTTCCTTAAAAAAAAAAAAATTATAAACTTATAGTGCTCAACTTTATCCCCGCATTTTCTGAAAAATCATACATGATTATGAATACACTTTTGAAACAAGGTTGTTTCAAAGTTGTTACAAAAAAATCGTAACAACTGTGTTTTGTTGTGTGTACTTTTAAAAAGACTTTAGATGTCTATAAAGTCTAACTTAATTGACAATGCTCATATTATTATACTAAACATTTTTGTCTGACTTCAATTCTTCAAAAAAAAAAAAATCTACACTCGACTTCAAATTCATAAGTTTGTAGTTGCGCGTAAATTTCAAGCCAAAATTTGAACCATTAATTTTTTTTTGTTTATTCAAGGAAAGGCATTAAAGATATTGGTCTAACACAATTCAATCTTCCCTTAAAAAAAAGAAGGAAAAAAAAAACACAATTCAATCTTATATAAAATTAATAAGAAAAAATATTTAAATATATGAAGTAATATTTAAATATACTTATATAAGAAAAAATATTTAAATATATGAAGTAATAATTAAATATATGTTCTCAATATCTTATATAAAATTTTAAAAAAAAATGGTTATGTTGTGTGTTTTGTATTTGTAAGATAAATTAAAAAATGAAAACAAATATTCAGAATCTTACATGCCGTGTCGGGTCACCTTAGTGGGCTATATGTGTTTGAAGCCCAAAATCCAGCGGTCCAAATCCAAAGCAAATTAGGGTTTCCAATTTCATTTTGCTATAAATCTTAACACAAGAAAACCTCTTCTTCTCAAATCTCACTCTCCTCAACAACAATCCAAGGTATTTTCGTTTTGTGCTTTTTAGGGTTATCTTTGATTTTCAGATTTGGTATTAATCTAGATCTGTATTGTGTTATAGGTTGAAGAAGAAGAAGAAGAAGATGGCAACAGTACCTGGACCACTTGTTTGGGAGATCGTGAAGAGGAACAACTCTTTTTTGGTTAAAGAGTTTGGAAATAACACTCAGAGTGTTCAGTTCAGCAGAGAACCTAATAATCTTTACAATCTTAACTCCTACAAATACTCTGGTTAGTATCAAAATCATTTTGTAAATGTATAATAGTTTTATGATTAATGGGTAGTAATAAAAATGATTTTTTTTTTTTTTTTTTATATTCTGTGATGGCTGTTTTTGTTGTTAAAGGGTTCTGTTTGGATAAACAGCTTACTTTGCATCTTAAAGTATAATGGGTTATCATATAACTGCTTATGATTAAGTTCTTTCTATAGCATAAGCTAAAATAAAGTCAAACTGTTTTTGTATAATCTATAAGCTGTTTTGATAAGCTATCATGAAGAGCTTATGTAAGTAAGCTGAAAACTGCTTATGCACATCTCGTAGACTGTTTTTATAAGTTCTTCCAAGCAGTATAATAAATGCTTATGCAAGTAGATATGCTCAAGCAAGCCTAAGTTTTAATCAAATGTGATTCTTTTGTGACATACTTGTTGAAATTAGTGAAGTTGGTGTTGAGATTTAGATTTCAATAATGTTAATGCCATGTGTATGATGGTTTCATAGTAGCAATTTTAATTTTTTTATGGTGAGTGAAGCTTACTTCATGTTTTTATTATGGTATAATAGGTTTGGCCAACAAGAAAACTGTAACTATTCAGTCTGCTGGCAAAGATCAGTCTGTGTTGTTGGCAACCACCAAGCCAAGGAAGCAAAACAAGCCTGCTGCTTTGCTTCACAAATCTGTTATGAAGAAAGAGTTTAGGAGGATGGCTAAGGCTGTGCAAAATCAGGTAATTTTTATAAAAAAAATTAGTAAATTTATGCTCCCGATTCTTGTTCTTTGTGTGGAATTAGTGGTTGGAAAATTCGGCTAAGTTGGTTGTTTTCATATTTCACAATATTGGTTTAGTAGTTGTATTCATATAGTTGTCATTCTAGGTGCTAAATATCTAGTCAAATCTTTTGCTAGGCAGAAATAGTTGAAAATTGTTTTGAATTGGTTGGTGCCAAATTATTTTGAATTAGAAATATTCACGATAATTGGATCTATATTAATTTTTTGAAGTTGTTTCAGTGCATTTTAATGGAAATACTGCCGGATTAGTTCAAAAATAAAACATTTGGAAACGCGTGGTTTATTTACATAAAAGCTTTAAAATTCAAACCATTTGAACCCCTCTTTCTTTGTTCGAATTTTCCTTGCTGTGATGAGCCTCTAACATGTAAGAAGGATCCATTTGTTGGGTTTATTCAGTGCAATATTATTGTTACGCTTGGCTTCTGAGCTTTGATTATTTAAAAGCTATTTTGTAAATCTAACCTTCTGATCTCCTTTGCCTGCACCGTTAATAGCGTGCCTCTCTTTTGTAACTTAAAACTATTTTTCCCTTACGCTCCCATTCAAATTATCTGTATGTTTAATTGAAATCATTTTAAACCGATTCAACTAGTGTTACCCAGCGGTGATGAGCTATTAACACGTAAGAAGAATCCCTATGTGGGTTTCTTCAATGAAATTTACTTGTTACGCTTGGCTTTTGAGCTTTGATCATTCAGAAGTTGTTTTGTGAATATAGCCTTTCGACATCTGATAATTGAAAATATTTTTCTTAACAAATCTAACCATTTTATCTAAGTCATTTTGTTTATTGTGCGAACCTAACATCCCTTTTTTCTGGTGATCTGGTTGTCCTAATTGCCATGTGATTTATCTGTGTAAATTAGAAACATTTTGCACCTCTGCCAGTAAGATTTGGTGTTCCCCAGCAGTGATGAGCCTCTAACATATAAGATGAATCCCTATGTGGGTTTCTTCAATGAAATTTACTTGTTACGCTTGGCTTCTGAGCTTTGATCATTCAGAAGTTGTTTCGTGAATATAGCCTAGTGACCTCTTATAATTCAAAATAGTTTTCCTAATGAATCTAACCTTTTTATCTCTTGTTTATTGTGCGAACCTGGTCTCTATTTTATCTGGTGATCTAGTTTTCCTAATTGCTACCATGCGATTTATCTGTGTAAATTAAAATAATTTTGTACCTATATGGACTAGGTTTTCCCCAGCAGTGATGAGCCGTTAACATATAAGAAGAATCCTTATGTGGGTTTCTTCAATGAAATATACTTGTTACGCTTGGCTTCTGAGCTTTGATCTTCAATAAGTATTTTGTGAACTTGCCCTTTTGATCTCTTCATAATGTCTTAGTAAACTATTTTCCTCATATGCTATTTTGCATTTATTCTGTATATAGTGAAATTCATTTTAAACCACCACTGCTAATATGATTGAATGCTTCCCATCGGTGATGAGCTGTTAACACGTAAGAAGGTTCCTTTGGGTTTCTTCAATGAAATTTACTTGTTACGCTTGGCTTCTGAGATTTGATCATTCAAACGTTCTTCCTTGATTTTTTAATTCAAGTTTTTATTTAGAGAAGCTGGTCTCTCCTTTATTTTGCAGCAAATGACTCCCAAATGCTGCCCAACAAATTATTTTGGAATAATTGGTTTTAGTCTAATATCTGTTCAAATTTGTTATCTCGATTTGCATCTTGTTTATGTTTAGTTGTACTTCTGATGAATTTCTATTTCATGAAAAAGCTTCATTGCCTTAATCGATGAGCTAATTTGATTTTTTGCGTGTGTGATGTGCCTCAGGTTGCAGATAACTACTACAGACCTGATCTTAAGAAGGCGGCTCTTGCAAGGTTGAGTGCTGTTAATAGGAGCCTCAGAGTTGCAAAGTCTGGCGCTAAGAAGAGAAACAGGCATGCAGGAAAGTGA

Protein sequence

>MS.gene76576.t1

MHVLEKLIAYDSLGLSHCSIRLKKKKKKMATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPNNLYNLNSYKYSGLANKKTVTIQSAGKDQSVLLATTKPRKQNKPAALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVNRSLRVAKSGAKKRNRHAGK