Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76576.t1 | XP_003597635.1 | 99.3 | 145 | 1 | 0 | 29 | 173 | 1 | 145 | 1.80E-70 | 275.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76576.t1 | Q9M0E2 | 72.0 | 143 | 40 | 0 | 29 | 171 | 1 | 143 | 3.6e-51 | 202.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76576.t1 | G7IUL4 | 99.3 | 145 | 1 | 0 | 29 | 173 | 1 | 145 | 1.3e-70 | 275.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050277 | MS.gene76576 | 0.874596 | 5.97E-68 | -1.69E-46 |
MS.gene050290 | MS.gene76576 | 0.846049 | 2.77E-59 | -1.69E-46 |
MS.gene050303 | MS.gene76576 | 0.821423 | 4.07E-53 | -1.69E-46 |
MS.gene050838 | MS.gene76576 | 0.803221 | 3.87E-49 | -1.69E-46 |
MS.gene050916 | MS.gene76576 | 0.821394 | 4.13E-53 | -1.69E-46 |
MS.gene051063 | MS.gene76576 | 0.836139 | 1.11E-56 | -1.69E-46 |
MS.gene051330 | MS.gene76576 | 0.860656 | 1.77E-63 | -1.69E-46 |
MS.gene05134 | MS.gene76576 | 0.824577 | 7.49E-54 | -1.69E-46 |
MS.gene051451 | MS.gene76576 | 0.800426 | 1.45E-48 | -1.69E-46 |
MS.gene051746 | MS.gene76576 | 0.872541 | 2.94E-67 | -1.69E-46 |
MS.gene051748 | MS.gene76576 | 0.859207 | 4.85E-63 | -1.69E-46 |
MS.gene051757 | MS.gene76576 | 0.80096 | 1.13E-48 | -1.69E-46 |
MS.gene05188 | MS.gene76576 | 0.808625 | 2.83E-50 | -1.69E-46 |
MS.gene051903 | MS.gene76576 | 0.863215 | 2.92E-64 | -1.69E-46 |
MS.gene051975 | MS.gene76576 | 0.801401 | 9.16E-49 | -1.69E-46 |
MS.gene052286 | MS.gene76576 | 0.818476 | 1.92E-52 | -1.69E-46 |
MS.gene052376 | MS.gene76576 | 0.80132 | 9.52E-49 | -1.69E-46 |
MS.gene052947 | MS.gene76576 | 0.879998 | 7.88E-70 | -1.69E-46 |
MS.gene053952 | MS.gene76576 | 0.830791 | 2.41E-55 | -1.69E-46 |
MS.gene054937 | MS.gene76576 | 0.841756 | 3.92E-58 | -1.69E-46 |
MS.gene055162 | MS.gene76576 | 0.809636 | 1.72E-50 | -1.69E-46 |
MS.gene055808 | MS.gene76576 | 0.821619 | 3.67E-53 | -1.69E-46 |
MS.gene056075 | MS.gene76576 | 0.814075 | 1.85E-51 | -1.69E-46 |
MS.gene056091 | MS.gene76576 | 0.825632 | 4.22E-54 | -1.69E-46 |
MS.gene056601 | MS.gene76576 | 0.845417 | 4.11E-59 | -1.69E-46 |
MS.gene056631 | MS.gene76576 | 0.890532 | 9.05E-74 | -1.69E-46 |
MS.gene056986 | MS.gene76576 | 0.822492 | 2.30E-53 | -1.69E-46 |
MS.gene057094 | MS.gene76576 | 0.867933 | 9.49E-66 | -1.69E-46 |
MS.gene057234 | MS.gene76576 | 0.81724 | 3.65E-52 | -1.69E-46 |
MS.gene057705 | MS.gene76576 | 0.804989 | 1.66E-49 | -1.69E-46 |
MS.gene05795 | MS.gene76576 | 0.803534 | 3.33E-49 | -1.69E-46 |
MS.gene058084 | MS.gene76576 | 0.828588 | 8.27E-55 | -1.69E-46 |
MS.gene058238 | MS.gene76576 | 0.830952 | 2.20E-55 | -1.69E-46 |
MS.gene058906 | MS.gene76576 | 0.871048 | 9.19E-67 | -1.69E-46 |
MS.gene059898 | MS.gene76576 | 0.809653 | 1.70E-50 | -1.69E-46 |
MS.gene06001 | MS.gene76576 | 0.917239 | 6.77E-86 | -1.69E-46 |
MS.gene06011 | MS.gene76576 | 0.803095 | 4.10E-49 | -1.69E-46 |
MS.gene060429 | MS.gene76576 | 0.853651 | 2.08E-61 | -1.69E-46 |
MS.gene060586 | MS.gene76576 | 0.818348 | 2.05E-52 | -1.69E-46 |
MS.gene060917 | MS.gene76576 | 0.813708 | 2.23E-51 | -1.69E-46 |
MS.gene061145 | MS.gene76576 | 0.801789 | 7.63E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene76576 | MS.gene52753 | PPI |
MS.gene76576 | MS.gene36675 | PPI |
MS.gene76576 | MS.gene36570 | PPI |
MS.gene76576 | MS.gene069908 | PPI |
MS.gene76576 | MS.gene36392 | PPI |
MS.gene76576 | MS.gene018074 | PPI |
MS.gene76576 | MS.gene018749 | PPI |
MS.gene76576 | MS.gene50465 | PPI |
MS.gene23520 | MS.gene76576 | PPI |
MS.gene76576 | MS.gene23528 | PPI |
MS.gene76576 | MS.gene52750 | PPI |
MS.gene069908 | MS.gene76576 | PPI |
MS.gene76576 | MS.gene072152 | PPI |
MS.gene76576 | MS.gene020330 | PPI |
MS.gene072152 | MS.gene76576 | PPI |
MS.gene018744 | MS.gene76576 | PPI |
MS.gene76576 | MS.gene04837 | PPI |
MS.gene76576 | MS.gene011132 | PPI |
MS.gene76576 | MS.gene23525 | PPI |
MS.gene76576 | MS.gene50464 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76576.t1 | MTR_2g100410 | 99.310 | 145 | 1 | 0 | 29 | 173 | 1 | 145 | 3.80e-104 | 295 |
MS.gene76576.t1 | MTR_8g015570 | 90.909 | 143 | 13 | 0 | 29 | 171 | 1 | 143 | 6.07e-94 | 269 |
MS.gene76576.t1 | MTR_8g015570 | 91.429 | 105 | 9 | 0 | 29 | 133 | 1 | 105 | 1.07e-68 | 204 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76576.t1 | AT4G29410 | 72.028 | 143 | 40 | 0 | 29 | 171 | 1 | 143 | 3.83e-73 | 216 |
MS.gene76576.t1 | AT4G29410 | 72.028 | 143 | 40 | 0 | 29 | 171 | 1 | 143 | 3.83e-73 | 216 |
MS.gene76576.t1 | AT2G19730 | 72.727 | 143 | 39 | 0 | 29 | 171 | 1 | 143 | 3.04e-72 | 214 |
MS.gene76576.t1 | AT2G19730 | 72.727 | 143 | 39 | 0 | 29 | 171 | 1 | 143 | 3.04e-72 | 214 |
MS.gene76576.t1 | AT2G19730 | 72.727 | 143 | 39 | 0 | 29 | 171 | 1 | 143 | 3.04e-72 | 214 |
Find 32 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCCTTTCCCATTGCAGTATC+AGG | 0.242570 | 2.3:-3252984 | MS.gene76576:intron |
TTAAGATTGTAAAGATTATT+AGG | 0.248943 | 2.3:+3250977 | None:intergenic |
CAAGGTTGAGTGCTGTTAAT+AGG | 0.286054 | 2.3:-3248303 | MS.gene76576:CDS |
CAGTACCTGGACCACTTGTT+TGG | 0.329181 | 2.3:-3251078 | MS.gene76576:CDS |
ATACTAACCAGAGTATTTGT+AGG | 0.368013 | 2.3:+3250952 | None:intergenic |
CTGTTATGAAGAAAGAGTTT+AGG | 0.418419 | 2.3:-3250266 | MS.gene76576:CDS |
AGTACCTGGACCACTTGTTT+GGG | 0.420976 | 2.3:-3251077 | MS.gene76576:CDS |
GGCTAAGGCTGTGCAAAATC+AGG | 0.425465 | 2.3:-3250238 | MS.gene76576:intron |
AGCCTCAGAGTTGCAAAGTC+TGG | 0.433352 | 2.3:-3248280 | MS.gene76576:CDS |
AAGAAGATGGCAACAGTACC+TGG | 0.461908 | 2.3:-3251091 | MS.gene76576:CDS |
CAAAGATCAGTCTGTGTTGT+TGG | 0.477149 | 2.3:-3250340 | MS.gene76576:CDS |
AACTTACCTGATACTGCAAT+GGG | 0.478806 | 2.3:+3252978 | None:intergenic |
ACTGTAACTATTCAGTCTGC+TGG | 0.486689 | 2.3:-3250363 | MS.gene76576:CDS |
CTTATTGCTTATGACTCTCT+CGG | 0.487123 | 2.3:-3253006 | MS.gene76576:CDS |
CTGGCGCTAAGAAGAGAAAC+AGG | 0.489005 | 2.3:-3248261 | MS.gene76576:CDS |
GAAGAAAGAGTTTAGGAGGA+TGG | 0.489919 | 2.3:-3250259 | MS.gene76576:CDS |
AAACTTACCTGATACTGCAA+TGG | 0.524313 | 2.3:+3252977 | None:intergenic |
CTTAACTCCTACAAATACTC+TGG | 0.532818 | 2.3:-3250959 | MS.gene76576:intron |
TTATGAAGAAAGAGTTTAGG+AGG | 0.533464 | 2.3:-3250263 | MS.gene76576:CDS |
GATTTGTGAAGCAAAGCAGC+AGG | 0.534387 | 2.3:+3250288 | None:intergenic |
AAGAAGAGAAACAGGCATGC+AGG | 0.536717 | 2.3:-3248253 | MS.gene76576:CDS |
AGAGTTTAGGAGGATGGCTA+AGG | 0.539424 | 2.3:-3250253 | MS.gene76576:CDS |
ATCTCCCAAACAAGTGGTCC+AGG | 0.541178 | 2.3:+3251073 | None:intergenic |
TTAAGAAGGCGGCTCTTGCA+AGG | 0.554765 | 2.3:-3248321 | MS.gene76576:CDS |
AGAGCCGCCTTCTTAAGATC+AGG | 0.566181 | 2.3:+3248328 | None:intergenic |
ACCTGATACTGCAATGGGAA+AGG | 0.566562 | 2.3:+3252983 | None:intergenic |
CTACAGACCTGATCTTAAGA+AGG | 0.570922 | 2.3:-3248335 | MS.gene76576:CDS |
CGCCAGACTTTGCAACTCTG+AGG | 0.579160 | 2.3:+3248278 | None:intergenic |
TTCACGATCTCCCAAACAAG+TGG | 0.590177 | 2.3:+3251067 | None:intergenic |
TGTTGGCAACCACCAAGCCA+AGG | 0.638986 | 2.3:-3250323 | MS.gene76576:CDS |
TTGTTTGGGAGATCGTGAAG+AGG | 0.651216 | 2.3:-3251063 | MS.gene76576:CDS |
CAGACCTGATCTTAAGAAGG+CGG | 0.695458 | 2.3:-3248332 | MS.gene76576:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATAAAATTTTAAAAAAAAA+TGG | - | chr2.3:3249835-3249854 | MS.gene76576:intron | 0.0% |
!!! | TTATAATTTTTTTTTTTTTA+AGG | + | chr2.3:3249291-3249310 | None:intergenic | 0.0% |
!! | ATTTCTAATTCAAAATAATT+TGG | + | chr2.3:3251273-3251292 | None:intergenic | 10.0% |
!!! | AATTTTTTTTTGTTTATTCA+AGG | - | chr2.3:3249613-3249632 | MS.gene76576:intron | 10.0% |
!!! | ATAATAGTTTTATGATTAAT+GGG | - | chr2.3:3250361-3250380 | MS.gene76576:CDS | 10.0% |
!!! | TAGCAATTTTAATTTTTTTA+TGG | - | chr2.3:3250827-3250846 | MS.gene76576:intron | 10.0% |
!!! | TATAATAGTTTTATGATTAA+TGG | - | chr2.3:3250360-3250379 | MS.gene76576:CDS | 10.0% |
!! | AAACTTGAATTAAAAAATCA+AGG | + | chr2.3:3252668-3252687 | None:intergenic | 15.0% |
!! | ATATGACAAATTTATTTACA+AGG | + | chr2.3:3248664-3248683 | None:intergenic | 15.0% |
!! | TAGTTCAAAAATAAAACATT+TGG | - | chr2.3:3251365-3251384 | MS.gene76576:intron | 15.0% |
!! | TTAAGATTGTAAAGATTATT+AGG | + | chr2.3:3250296-3250315 | None:intergenic | 15.0% |
!! | TTGTAAATAAATTTGTCATA+TGG | - | chr2.3:3248663-3248682 | MS.gene76576:intron | 15.0% |
!!! | AAAATAATTTTGTACCTATA+TGG | - | chr2.3:3252288-3252307 | MS.gene76576:intron | 15.0% |
!!! | AAAATTAATGGTTCAAATTT+TGG | + | chr2.3:3249599-3249618 | None:intergenic | 15.0% |
!!! | AAACTATTTTGAATTATAAG+AGG | + | chr2.3:3252157-3252176 | None:intergenic | 15.0% |
!!! | ACAAATTATTTTGGAATAAT+TGG | - | chr2.3:3252748-3252767 | MS.gene76576:intron | 15.0% |
!!! | AGTAATTTTATCTAATCTAA+TGG | - | chr2.3:3248637-3248656 | MS.gene76576:intron | 15.0% |
!!! | ATTATTCCAAAATAATTTGT+TGG | + | chr2.3:3252748-3252767 | None:intergenic | 15.0% |
!!! | TGTTTTTATTATGGTATAAT+AGG | - | chr2.3:3250868-3250887 | MS.gene76576:intron | 15.0% |
!!! | TTATTCCAAAATAATTTGTT+GGG | + | chr2.3:3252747-3252766 | None:intergenic | 15.0% |
!!! | TTTTTCCTTCTTTTTTTTAA+GGG | + | chr2.3:3249678-3249697 | None:intergenic | 15.0% |
!!! | TTTTTTCCTTCTTTTTTTTA+AGG | + | chr2.3:3249679-3249698 | None:intergenic | 15.0% |
!!! | TTTTTTTTTATATTCTGTGA+TGG | - | chr2.3:3250408-3250427 | MS.gene76576:intron | 15.0% |
!! | AAACATACAGATAATTTGAA+TGG | + | chr2.3:3251663-3251682 | None:intergenic | 20.0% |
!! | AACATACAGATAATTTGAAT+GGG | + | chr2.3:3251662-3251681 | None:intergenic | 20.0% |
!! | ACAAAATGACTTAGATAAAA+TGG | + | chr2.3:3251889-3251908 | None:intergenic | 20.0% |
!! | ACAATAAACAAGAGATAAAA+AGG | + | chr2.3:3252195-3252214 | None:intergenic | 20.0% |
!! | ATAAAAAGGTTAGATTCATT+AGG | + | chr2.3:3252181-3252200 | None:intergenic | 20.0% |
!! | ATCACATTTGATTAAAACTT+AGG | + | chr2.3:3250716-3250735 | None:intergenic | 20.0% |
!! | ATTATTATAGCATAAATGTG+GGG | - | chr2.3:3248446-3248465 | MS.gene76576:intron | 20.0% |
!! | CAGAATATGTATCTATAAAT+TGG | + | chr2.3:3248743-3248762 | None:intergenic | 20.0% |
!! | CATTATTATAGCATAAATGT+GGG | - | chr2.3:3248445-3248464 | MS.gene76576:intron | 20.0% |
!! | GATTTATAGCAAAATGAAAT+TGG | + | chr2.3:3250009-3250028 | None:intergenic | 20.0% |
!! | TTAGAAATATTCACGATAAT+TGG | - | chr2.3:3251285-3251304 | MS.gene76576:intron | 20.0% |
!! | TTATTATGGTATAATAGGTT+TGG | - | chr2.3:3250873-3250892 | MS.gene76576:intron | 20.0% |
!! | TTTGCATCTTAAAGTATAAT+GGG | - | chr2.3:3250474-3250493 | MS.gene76576:intron | 20.0% |
!!! | AGTTGAAAATTGTTTTGAAT+TGG | - | chr2.3:3251241-3251260 | MS.gene76576:intron | 20.0% |
!!! | CTTACTTCATGTTTTTATTA+TGG | - | chr2.3:3250859-3250878 | MS.gene76576:intron | 20.0% |
!!! | GTTTTATTTTTGAACTAATC+CGG | + | chr2.3:3251362-3251381 | None:intergenic | 20.0% |
!!! | GTTTTCATATTTCACAATAT+TGG | - | chr2.3:3251145-3251164 | MS.gene76576:intron | 20.0% |
!!! | TAGTTTTTTTCTCCATAAAT+AGG | - | chr2.3:3249154-3249173 | MS.gene76576:intron | 20.0% |
!!! | TTATCTTTGATTTTCAGATT+TGG | - | chr2.3:3250111-3250130 | MS.gene76576:intron | 20.0% |
!!! | TTTTCACATTTTCCTATTTA+TGG | + | chr2.3:3249169-3249188 | None:intergenic | 20.0% |
!!! | TTTTTTGTTTATTCAAGGAA+AGG | - | chr2.3:3249618-3249637 | MS.gene76576:intron | 20.0% |
! | AAAATTCGAACAAAGAAAGA+GGG | + | chr2.3:3251441-3251460 | None:intergenic | 25.0% |
! | AAATGTGAAAATATGACTGT+TGG | - | chr2.3:3249178-3249197 | MS.gene76576:intron | 25.0% |
! | ACATTATGAAGAGATCAAAA+GGG | + | chr2.3:3252444-3252463 | None:intergenic | 25.0% |
! | ATATAAGAAGAATCCTTATG+TGG | - | chr2.3:3252345-3252364 | MS.gene76576:intron | 25.0% |
! | ATATTCATCATTAGTATGAG+CGG | - | chr2.3:3248406-3248425 | MS.gene76576:intron | 25.0% |
! | ATCTTCCCTTAAAAAAAAGA+AGG | - | chr2.3:3249670-3249689 | MS.gene76576:intron | 25.0% |
! | ATTCATATAGTTGTCATTCT+AGG | - | chr2.3:3251180-3251199 | MS.gene76576:intron | 25.0% |
! | ATTTACACAGATAAATCACA+TGG | + | chr2.3:3251965-3251984 | None:intergenic | 25.0% |
! | CCACATTTATGCTATAATAA+TGG | + | chr2.3:3248447-3248466 | None:intergenic | 25.0% |
! | CCATTATTATAGCATAAATG+TGG | - | chr2.3:3248444-3248463 | MS.gene76576:intron | 25.0% |
! | CTTTGCATCTTAAAGTATAA+TGG | - | chr2.3:3250473-3250492 | MS.gene76576:intron | 25.0% |
! | GGATTCTTCTTATATGTTAA+CGG | + | chr2.3:3252340-3252359 | None:intergenic | 25.0% |
! | TAAATGCAAAATAGCATATG+AGG | + | chr2.3:3252483-3252502 | None:intergenic | 25.0% |
! | TAAGCATTTATTATACTGCT+TGG | + | chr2.3:3250669-3250688 | None:intergenic | 25.0% |
! | TATAAGAAGAATCCTTATGT+GGG | - | chr2.3:3252346-3252365 | MS.gene76576:intron | 25.0% |
! | TGATAACTGAAATGTTGTAA+TGG | + | chr2.3:3248375-3248394 | None:intergenic | 25.0% |
!! | AATAGTTACAGTTTTCTTGT+TGG | + | chr2.3:3250899-3250918 | None:intergenic | 25.0% |
!! | AATATAATTTGTAAGGAGTC+TGG | - | chr2.3:3249010-3249029 | MS.gene76576:intron | 25.0% |
!! | CGCTTTTAACATAAGATATT+TGG | - | chr2.3:3248491-3248510 | MS.gene76576:intron | 25.0% |
!!! | AAGTTTTTATTTAGAGAAGC+TGG | - | chr2.3:3252682-3252701 | MS.gene76576:intron | 25.0% |
!!! | AGTTTTAAGTTACAAAAGAG+AGG | + | chr2.3:3251623-3251642 | None:intergenic | 25.0% |
!!! | ATGAATACACTTTTGAAACA+AGG | - | chr2.3:3249363-3249382 | MS.gene76576:intron | 25.0% |
!!! | ATTTTCGTTTTGTGCTTTTT+AGG | - | chr2.3:3250087-3250106 | MS.gene76576:intron | 25.0% |
!!! | GAAAATTGTTTTGAATTGGT+TGG | - | chr2.3:3251245-3251264 | MS.gene76576:intron | 25.0% |
!!! | GTATGATTTTTCAGAAAATG+CGG | + | chr2.3:3249337-3249356 | None:intergenic | 25.0% |
!!! | GTCATCTTGTATTTTTTTCA+GGG | - | chr2.3:3248613-3248632 | MS.gene76576:intron | 25.0% |
!!! | TATGATTTTTCAGAAAATGC+GGG | + | chr2.3:3249336-3249355 | None:intergenic | 25.0% |
!!! | TCATCTTGTATTTTTTTCAG+GGG | - | chr2.3:3248614-3248633 | MS.gene76576:intron | 25.0% |
!!! | TCTTTTTTGGTTAAAGAGTT+TGG | - | chr2.3:3250236-3250255 | MS.gene76576:intron | 25.0% |
!!! | TGTCATCTTGTATTTTTTTC+AGG | - | chr2.3:3248612-3248631 | MS.gene76576:intron | 25.0% |
!!! | TTTTCGTTTTGTGCTTTTTA+GGG | - | chr2.3:3250088-3250107 | MS.gene76576:intron | 25.0% |
AAAAACTATGCTCAGAGTTT+GGG | + | chr2.3:3249079-3249098 | None:intergenic | 30.0% | |
AAAATGTTCAAAAACAGTGC+TGG | - | chr2.3:3248772-3248791 | MS.gene76576:intron | 30.0% | |
AAATTCGAACAAAGAAAGAG+GGG | + | chr2.3:3251440-3251459 | None:intergenic | 30.0% | |
AGATAAATCACATGGCAATT+AGG | + | chr2.3:3251957-3251976 | None:intergenic | 30.0% | |
ATATAAGATGAATCCCTATG+TGG | - | chr2.3:3252048-3252067 | MS.gene76576:intron | 30.0% | |
ATTTACACAGATAAATCGCA+TGG | + | chr2.3:3252267-3252286 | None:intergenic | 30.0% | |
ATTTCATTGAAGAAACCCAA+AGG | + | chr2.3:3252598-3252617 | None:intergenic | 30.0% | |
CTAGATCTGTATTGTGTTAT+AGG | - | chr2.3:3250141-3250160 | MS.gene76576:intron | 30.0% | |
CTGTTATGAAGAAAGAGTTT+AGG | - | chr2.3:3251004-3251023 | MS.gene76576:CDS | 30.0% | |
CTTGTTGAAATTAGTGAAGT+TGG | - | chr2.3:3250750-3250769 | MS.gene76576:intron | 30.0% | |
GAAAATTCGAACAAAGAAAG+AGG | + | chr2.3:3251442-3251461 | None:intergenic | 30.0% | |
GAATTAGTGGTTGGAAAATT+CGG | - | chr2.3:3251111-3251130 | MS.gene76576:intron | 30.0% | |
GACATTATGAAGAGATCAAA+AGG | + | chr2.3:3252445-3252464 | None:intergenic | 30.0% | |
GGATTCATCTTATATGTTAG+AGG | + | chr2.3:3252043-3252062 | None:intergenic | 30.0% | |
TAAAAACTATGCTCAGAGTT+TGG | + | chr2.3:3249080-3249099 | None:intergenic | 30.0% | |
TATAAGATGAATCCCTATGT+GGG | - | chr2.3:3252049-3252068 | MS.gene76576:intron | 30.0% | |
TCCAAATCCAAAGCAAATTA+GGG | - | chr2.3:3249980-3249999 | MS.gene76576:intron | 30.0% | |
TGACTACTGAGAAATATACA+AGG | - | chr2.3:3248982-3249001 | MS.gene76576:intron | 30.0% | |
TGCAATATTATTGTTACGCT+TGG | - | chr2.3:3251518-3251537 | MS.gene76576:intron | 30.0% | |
TTATGAAGAAAGAGTTTAGG+AGG | - | chr2.3:3251007-3251026 | MS.gene76576:CDS | 30.0% | |
TTCAATTATCAGATGTCGAA+AGG | + | chr2.3:3251843-3251862 | None:intergenic | 30.0% | |
TTGAATTATAAGAGGTCACT+AGG | + | chr2.3:3252149-3252168 | None:intergenic | 30.0% | |
! | AAGCTCAACAAAAAAGTATG+AGG | - | chr2.3:3248576-3248595 | MS.gene76576:intron | 30.0% |
! | AGTCATTTGCTGCAAAATAA+AGG | + | chr2.3:3252713-3252732 | None:intergenic | 30.0% |
! | ATACTAACCAGAGTATTTGT+AGG | + | chr2.3:3250321-3250340 | None:intergenic | 30.0% |
! | ATCTAGTCAAATCTTTTGCT+AGG | - | chr2.3:3251211-3251230 | MS.gene76576:intron | 30.0% |
! | ATTTTGTACCTATATGGACT+AGG | - | chr2.3:3252294-3252313 | MS.gene76576:intron | 30.0% |
! | GGAGTGGAATATAATTTGTA+AGG | - | chr2.3:3249003-3249022 | MS.gene76576:intron | 30.0% |
! | TAATAATTCCCTCGTTTTGT+TGG | - | chr2.3:3249106-3249125 | MS.gene76576:intron | 30.0% |
! | TCAAATTAGCTCATCGATTA+AGG | + | chr2.3:3252875-3252894 | None:intergenic | 30.0% |
! | TGAAATATACTTGTTACGCT+TGG | - | chr2.3:3252378-3252397 | MS.gene76576:intron | 30.0% |
! | TGAAATTTACTTGTTACGCT+TGG | - | chr2.3:3251775-3251794 | MS.gene76576:intron | 30.0% |
!! | AGATATTTGGTTGATGAAGA+TGG | - | chr2.3:3248504-3248523 | MS.gene76576:intron | 30.0% |
!! | AGGAAAGGCATTAAAGATAT+TGG | - | chr2.3:3249633-3249652 | MS.gene76576:intron | 30.0% |
!! | ATGATTTTTCAGAAAATGCG+GGG | + | chr2.3:3249335-3249354 | None:intergenic | 30.0% |
!! | CATTTTAATGGAAATACTGC+CGG | - | chr2.3:3251340-3251359 | MS.gene76576:intron | 30.0% |
!! | GTTGTTTCAGTGCATTTTAA+TGG | - | chr2.3:3251328-3251347 | MS.gene76576:intron | 30.0% |
!!! | ATGGCTGTTTTTGTTGTTAA+AGG | - | chr2.3:3250427-3250446 | MS.gene76576:intron | 30.0% |
!!! | TGGCTGTTTTTGTTGTTAAA+GGG | - | chr2.3:3250428-3250447 | MS.gene76576:intron | 30.0% |
AAACTTACCTGATACTGCAA+TGG | + | chr2.3:3248296-3248315 | None:intergenic | 35.0% | |
AACCAGATCACCAGAAAAAA+GGG | + | chr2.3:3251932-3251951 | None:intergenic | 35.0% | |
AACTTACCTGATACTGCAAT+GGG | + | chr2.3:3248295-3248314 | None:intergenic | 35.0% | |
AATATGTCACAGTGCTATGA+AGG | - | chr2.3:3248831-3248850 | MS.gene76576:intron | 35.0% | |
ACTGAGAAATATACAAGGAG+TGG | - | chr2.3:3248987-3249006 | MS.gene76576:intron | 35.0% | |
AGAACCATGCTAGATTGATA+TGG | - | chr2.3:3248699-3248718 | MS.gene76576:intron | 35.0% | |
AGCACAAAACGAAAATACCT+TGG | + | chr2.3:3250083-3250102 | None:intergenic | 35.0% | |
ATAAAACATTTGGAAACGCG+TGG | - | chr2.3:3251375-3251394 | MS.gene76576:intron | 35.0% | |
ATGATGAATCCAACAAAACG+AGG | + | chr2.3:3249118-3249137 | None:intergenic | 35.0% | |
ATTGCAGTATCAGGTAAGTT+TGG | - | chr2.3:3248295-3248314 | MS.gene76576:CDS | 35.0% | |
CACTGAATAAACCCAACAAA+TGG | + | chr2.3:3251500-3251519 | None:intergenic | 35.0% | |
CATAGCACTGTGACATATTA+GGG | + | chr2.3:3248830-3248849 | None:intergenic | 35.0% | |
CTATGAAACCATCATACACA+TGG | + | chr2.3:3250807-3250826 | None:intergenic | 35.0% | |
CTTAACTCCTACAAATACTC+TGG | - | chr2.3:3250311-3250330 | MS.gene76576:CDS | 35.0% | |
CTTATTGCTTATGACTCTCT+CGG | - | chr2.3:3248264-3248283 | MS.gene76576:CDS | 35.0% | |
GAAGAAGAAGAAGAAGAAGA+TGG | - | chr2.3:3250166-3250185 | MS.gene76576:intron | 35.0% | |
GCAGTTATGCTTATTCAATC+TGG | - | chr2.3:3248887-3248906 | MS.gene76576:intron | 35.0% | |
GCATTCAATCATATTAGCAG+TGG | + | chr2.3:3252537-3252556 | None:intergenic | 35.0% | |
GTAAGAAGGATCCATTTGTT+GGG | - | chr2.3:3251486-3251505 | MS.gene76576:intron | 35.0% | |
GTCCAAATCCAAAGCAAATT+AGG | - | chr2.3:3249979-3249998 | MS.gene76576:intron | 35.0% | |
TAAATCGCATGGTAGCAATT+AGG | + | chr2.3:3252256-3252275 | None:intergenic | 35.0% | |
TATGATTGAATGCTTCCCAT+CGG | - | chr2.3:3252544-3252563 | MS.gene76576:intron | 35.0% | |
TCATAGCACTGTGACATATT+AGG | + | chr2.3:3248831-3248850 | None:intergenic | 35.0% | |
TCATTGAAGAAACCCACATA+AGG | + | chr2.3:3251758-3251777 | None:intergenic | 35.0% | |
TCATTGAAGAAACCCACATA+GGG | + | chr2.3:3251758-3251777 | None:intergenic | 35.0% | |
TCCACACAAAGAACAAGAAT+CGG | + | chr2.3:3251093-3251112 | None:intergenic | 35.0% | |
TGATGAATCCAACAAAACGA+GGG | + | chr2.3:3249117-3249136 | None:intergenic | 35.0% | |
TGTAAGAAGGATCCATTTGT+TGG | - | chr2.3:3251485-3251504 | MS.gene76576:intron | 35.0% | |
TGTTAATGCCATGTGTATGA+TGG | - | chr2.3:3250796-3250815 | MS.gene76576:intron | 35.0% | |
TGTTCTTTGTGTGGAATTAG+TGG | - | chr2.3:3251098-3251117 | MS.gene76576:CDS | 35.0% | |
TGTTGTTAAAGGGTTCTGTT+TGG | - | chr2.3:3250438-3250457 | MS.gene76576:intron | 35.0% | |
TTAAAAGCGAAGCTAGATCA+AGG | + | chr2.3:3248480-3248499 | None:intergenic | 35.0% | |
TTCAATCATATTAGCAGTGG+TGG | + | chr2.3:3252534-3252553 | None:intergenic | 35.0% | |
TTCATTGAAGAAACCCACAT+AGG | + | chr2.3:3251759-3251778 | None:intergenic | 35.0% | |
TTGGGCAAACATTGAAAGAA+AGG | + | chr2.3:3249061-3249080 | None:intergenic | 35.0% | |
! | AACCTGGTCTCTATTTTATC+TGG | - | chr2.3:3252218-3252237 | MS.gene76576:intron | 35.0% |
! | AATACCTTGGATTGTTGTTG+AGG | + | chr2.3:3250070-3250089 | None:intergenic | 35.0% |
! | ATAATTTGAATGGGAGCGTA+AGG | + | chr2.3:3251653-3251672 | None:intergenic | 35.0% |
! | TAATTTGAATGGGAGCGTAA+GGG | + | chr2.3:3251652-3251671 | None:intergenic | 35.0% |
! | TGCTGCCCAACAAATTATTT+TGG | - | chr2.3:3252739-3252758 | MS.gene76576:intron | 35.0% |
!! | ACCCTAATTTGCTTTGGATT+TGG | + | chr2.3:3249984-3250003 | None:intergenic | 35.0% |
!! | ATAATTTGTTGGGCAGCATT+TGG | + | chr2.3:3252737-3252756 | None:intergenic | 35.0% |
!! | TAATTTGTTGGGCAGCATTT+GGG | + | chr2.3:3252736-3252755 | None:intergenic | 35.0% |
!! | TTGGAAACCCTAATTTGCTT+TGG | + | chr2.3:3249990-3250009 | None:intergenic | 35.0% |
!!! | AACCTAACATCCCTTTTTTC+TGG | - | chr2.3:3251919-3251938 | MS.gene76576:intron | 35.0% |
!!! | GAAGAGGAACAACTCTTTTT+TGG | - | chr2.3:3250223-3250242 | MS.gene76576:intron | 35.0% |
AACACGTAAGAAGGTTCCTT+TGG | - | chr2.3:3252579-3252598 | MS.gene76576:intron | 40.0% | |
AACGCCATATCAATCTAGCA+TGG | + | chr2.3:3248706-3248725 | None:intergenic | 40.0% | |
ACACGTAAGAAGGTTCCTTT+GGG | - | chr2.3:3252580-3252599 | MS.gene76576:intron | 40.0% | |
ACGTAAGAAGAATCCCTATG+TGG | - | chr2.3:3251742-3251761 | MS.gene76576:intron | 40.0% | |
ACTGTAACTATTCAGTCTGC+TGG | - | chr2.3:3250907-3250926 | MS.gene76576:intron | 40.0% | |
ATTCAACTAGTGTTACCCAG+CGG | - | chr2.3:3251704-3251723 | MS.gene76576:intron | 40.0% | |
CAAACACATATAGCCCACTA+AGG | + | chr2.3:3249942-3249961 | None:intergenic | 40.0% | |
CAAAGAAAGAGGGGTTCAAA+TGG | + | chr2.3:3251431-3251450 | None:intergenic | 40.0% | |
CAAAGATCAGTCTGTGTTGT+TGG | - | chr2.3:3250930-3250949 | MS.gene76576:intron | 40.0% | |
CAACCAGATCACCAGAAAAA+AGG | + | chr2.3:3251933-3251952 | None:intergenic | 40.0% | |
CACCAGAAAAAAGGGATGTT+AGG | + | chr2.3:3251924-3251943 | None:intergenic | 40.0% | |
CACCAGATAAAATAGAGACC+AGG | + | chr2.3:3252223-3252242 | None:intergenic | 40.0% | |
CCACACAAAGAACAAGAATC+GGG | + | chr2.3:3251092-3251111 | None:intergenic | 40.0% | |
CGTAAGAAGAATCCCTATGT+GGG | - | chr2.3:3251743-3251762 | MS.gene76576:intron | 40.0% | |
CTACAGACCTGATCTTAAGA+AGG | - | chr2.3:3252935-3252954 | MS.gene76576:intron | 40.0% | |
CTGGGTAACACTAGTTGAAT+CGG | + | chr2.3:3251704-3251723 | None:intergenic | 40.0% | |
CTTTGTGTGGAATTAGTGGT+TGG | - | chr2.3:3251102-3251121 | MS.gene76576:CDS | 40.0% | |
GAAGAAAGAGTTTAGGAGGA+TGG | - | chr2.3:3251011-3251030 | MS.gene76576:CDS | 40.0% | |
GAGTGAGATTTGAGAAGAAG+AGG | + | chr2.3:3250046-3250065 | None:intergenic | 40.0% | |
GGATCCTTCTTACATGTTAG+AGG | + | chr2.3:3251479-3251498 | None:intergenic | 40.0% | |
GTTGGAAAATTCGGCTAAGT+TGG | - | chr2.3:3251120-3251139 | MS.gene76576:intron | 40.0% | |
TAATGGAGACCAGTTTCCAT+AGG | + | chr2.3:3248358-3248377 | None:intergenic | 40.0% | |
TAGTAGTTATCTGCAACCTG+AGG | + | chr2.3:3252918-3252937 | None:intergenic | 40.0% | |
TGAGCCTCTAACATGTAAGA+AGG | - | chr2.3:3251472-3251491 | MS.gene76576:intron | 40.0% | |
TGAGCTGTTAACACGTAAGA+AGG | - | chr2.3:3252570-3252589 | MS.gene76576:intron | 40.0% | |
! | AAAGAGAGGCACGCTATTAA+CGG | + | chr2.3:3251609-3251628 | None:intergenic | 40.0% |
! | CAAGGTTGAGTGCTGTTAAT+AGG | - | chr2.3:3252967-3252986 | MS.gene76576:intron | 40.0% |
! | TCTTGTTTATTGTGCGAACC+TGG | - | chr2.3:3252202-3252221 | MS.gene76576:intron | 40.0% |
!!! | ATCCCTTTTTTCTGGTGATC+TGG | - | chr2.3:3251927-3251946 | MS.gene76576:intron | 40.0% |
AAGAAGAGAAACAGGCATGC+AGG | - | chr2.3:3253017-3253036 | MS.gene76576:CDS | 45.0% | |
AAGAAGATGGCAACAGTACC+TGG | - | chr2.3:3250179-3250198 | MS.gene76576:intron | 45.0% | |
ACACCAAATCTTACTGGCAG+AGG | + | chr2.3:3252003-3252022 | None:intergenic | 45.0% | |
ACCTGATACTGCAATGGGAA+AGG | + | chr2.3:3248290-3248309 | None:intergenic | 45.0% | |
AGAATCTTACATGCCGTGTC+GGG | - | chr2.3:3249913-3249932 | MS.gene76576:intron | 45.0% | |
AGAGTTTAGGAGGATGGCTA+AGG | - | chr2.3:3251017-3251036 | MS.gene76576:CDS | 45.0% | |
AGCACTGTGACATATTAGGG+AGG | + | chr2.3:3248827-3248846 | None:intergenic | 45.0% | |
AGTACCTGGACCACTTGTTT+GGG | - | chr2.3:3250193-3250212 | MS.gene76576:intron | 45.0% | |
CAGAATCTTACATGCCGTGT+CGG | - | chr2.3:3249912-3249931 | MS.gene76576:intron | 45.0% | |
CAGACCTGATCTTAAGAAGG+CGG | - | chr2.3:3252938-3252957 | MS.gene76576:intron | 45.0% | |
CCCGATTCTTGTTCTTTGTG+TGG | - | chr2.3:3251089-3251108 | MS.gene76576:CDS | 45.0% | |
CTCTCCTCAACAACAATCCA+AGG | - | chr2.3:3250063-3250082 | MS.gene76576:intron | 45.0% | |
GATTTGTGAAGCAAAGCAGC+AGG | + | chr2.3:3250985-3251004 | None:intergenic | 45.0% | |
GGGGAAAACCTAGTCCATAT+AGG | + | chr2.3:3252305-3252324 | None:intergenic | 45.0% | |
GTTAACAGCTCATCACCGAT+GGG | + | chr2.3:3252562-3252581 | None:intergenic | 45.0% | |
GTTAATAGCTCATCACCGCT+GGG | + | chr2.3:3251722-3251741 | None:intergenic | 45.0% | |
TGGGGAACACCAAATCTTAC+TGG | + | chr2.3:3252009-3252028 | None:intergenic | 45.0% | |
TGTTAACAGCTCATCACCGA+TGG | + | chr2.3:3252563-3252582 | None:intergenic | 45.0% | |
TGTTAATAGCTCATCACCGC+TGG | + | chr2.3:3251723-3251742 | None:intergenic | 45.0% | |
TTAACCTACTGCGACTCCTA+TGG | - | chr2.3:3248339-3248358 | MS.gene76576:CDS | 45.0% | |
TTCACGATCTCCCAAACAAG+TGG | + | chr2.3:3250206-3250225 | None:intergenic | 45.0% | |
TTGTTTGGGAGATCGTGAAG+AGG | - | chr2.3:3250207-3250226 | MS.gene76576:intron | 45.0% | |
! | GATTTGGACCGCTGGATTTT+GGG | + | chr2.3:3249968-3249987 | None:intergenic | 45.0% |
! | GTTTGAAGCCCAAAATCCAG+CGG | - | chr2.3:3249957-3249976 | MS.gene76576:intron | 45.0% |
! | TAAGGAGTCTGGTTCGTTTG+AGG | - | chr2.3:3249021-3249040 | MS.gene76576:intron | 45.0% |
!! | TGTTCAAAAACAGTGCTGGC+TGG | - | chr2.3:3248776-3248795 | MS.gene76576:intron | 45.0% |
!!! | CTTGTTTTGCTTCCTTGGCT+TGG | + | chr2.3:3250962-3250981 | None:intergenic | 45.0% |
!! | AATAAACAAAAAAAAATTAA+TGG | + | chr2.3:3249611-3249630 | None:intergenic | 5.0% |
ACTGCGACTCCTATGGAAAC+TGG | - | chr2.3:3248346-3248365 | MS.gene76576:CDS | 50.0% | |
AGAGCCGCCTTCTTAAGATC+AGG | + | chr2.3:3252945-3252964 | None:intergenic | 50.0% | |
AGCCTCAGAGTTGCAAAGTC+TGG | - | chr2.3:3252990-3253009 | MS.gene76576:CDS | 50.0% | |
ATCTCCCAAACAAGTGGTCC+AGG | + | chr2.3:3250200-3250219 | None:intergenic | 50.0% | |
CAGTACCTGGACCACTTGTT+TGG | - | chr2.3:3250192-3250211 | MS.gene76576:intron | 50.0% | |
CTGGCGCTAAGAAGAGAAAC+AGG | - | chr2.3:3253009-3253028 | MS.gene76576:CDS | 50.0% | |
GCACCTCTGCCAGTAAGATT+TGG | - | chr2.3:3251997-3252016 | MS.gene76576:intron | 50.0% | |
GCCTTTCCCATTGCAGTATC+AGG | - | chr2.3:3248286-3248305 | MS.gene76576:CDS | 50.0% | |
GCTATTAACGGTGCAGGCAA+AGG | + | chr2.3:3251597-3251616 | None:intergenic | 50.0% | |
GGCTAAGGCTGTGCAAAATC+AGG | - | chr2.3:3251032-3251051 | MS.gene76576:CDS | 50.0% | |
GTTAACGGCTCATCACTGCT+GGG | + | chr2.3:3252325-3252344 | None:intergenic | 50.0% | |
GTTAGAGGCTCATCACAGCA+AGG | + | chr2.3:3251464-3251483 | None:intergenic | 50.0% | |
GTTAGAGGCTCATCACTGCT+GGG | + | chr2.3:3252028-3252047 | None:intergenic | 50.0% | |
GTTTCCATAGGAGTCGCAGT+AGG | + | chr2.3:3248346-3248365 | None:intergenic | 50.0% | |
TGCAGGCAAAGGAGATCAGA+AGG | + | chr2.3:3251586-3251605 | None:intergenic | 50.0% | |
TGTTAACGGCTCATCACTGC+TGG | + | chr2.3:3252326-3252345 | None:intergenic | 50.0% | |
TGTTAGAGGCTCATCACTGC+TGG | + | chr2.3:3252029-3252048 | None:intergenic | 50.0% | |
TTAACGGCTCATCACTGCTG+GGG | + | chr2.3:3252324-3252343 | None:intergenic | 50.0% | |
TTAAGAAGGCGGCTCTTGCA+AGG | - | chr2.3:3252949-3252968 | MS.gene76576:intron | 50.0% | |
TTAGAGGCTCATCACTGCTG+GGG | + | chr2.3:3252027-3252046 | None:intergenic | 50.0% | |
! | GGATTTGGACCGCTGGATTT+TGG | + | chr2.3:3249969-3249988 | None:intergenic | 50.0% |
! | TTGCTTTGGATTTGGACCGC+TGG | + | chr2.3:3249976-3249995 | None:intergenic | 50.0% |
!!! | GCAGGCTTGTTTTGCTTCCT+TGG | + | chr2.3:3250967-3250986 | None:intergenic | 50.0% |
!!! | GTTTTGCTTCCTTGGCTTGG+TGG | + | chr2.3:3250959-3250978 | None:intergenic | 50.0% |
AGGCACGCTATTAACGGTGC+AGG | + | chr2.3:3251603-3251622 | None:intergenic | 55.0% | |
CGCCAGACTTTGCAACTCTG+AGG | + | chr2.3:3252995-3253014 | None:intergenic | 55.0% | |
TGTTGGCAACCACCAAGCCA+AGG | - | chr2.3:3250947-3250966 | MS.gene76576:intron | 55.0% | |
TTGCGTGTGTGATGTGCCTC+AGG | - | chr2.3:3252899-3252918 | MS.gene76576:intron | 55.0% | |
CCCACTAAGGTGACCCGACA+CGG | + | chr2.3:3249929-3249948 | None:intergenic | 60.0% | |
CCGTGTCGGGTCACCTTAGT+GGG | - | chr2.3:3249926-3249945 | MS.gene76576:intron | 60.0% | |
GCCGTGTCGGGTCACCTTAG+TGG | - | chr2.3:3249925-3249944 | MS.gene76576:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 3248246 | 3253046 | 3248246 | ID=MS.gene76576 |
chr2.3 | mRNA | 3248246 | 3253046 | 3248246 | ID=MS.gene76576.t1;Parent=MS.gene76576 |
chr2.3 | exon | 3252985 | 3253046 | 3252985 | ID=MS.gene76576.t1.exon1;Parent=MS.gene76576.t1 |
chr2.3 | CDS | 3252985 | 3253046 | 3252985 | ID=cds.MS.gene76576.t1;Parent=MS.gene76576.t1 |
chr2.3 | exon | 3250960 | 3251129 | 3250960 | ID=MS.gene76576.t1.exon2;Parent=MS.gene76576.t1 |
chr2.3 | CDS | 3250960 | 3251129 | 3250960 | ID=cds.MS.gene76576.t1;Parent=MS.gene76576.t1 |
chr2.3 | exon | 3250239 | 3250402 | 3250239 | ID=MS.gene76576.t1.exon3;Parent=MS.gene76576.t1 |
chr2.3 | CDS | 3250239 | 3250402 | 3250239 | ID=cds.MS.gene76576.t1;Parent=MS.gene76576.t1 |
chr2.3 | exon | 3248246 | 3248371 | 3248246 | ID=MS.gene76576.t1.exon4;Parent=MS.gene76576.t1 |
chr2.3 | CDS | 3248246 | 3248371 | 3248246 | ID=cds.MS.gene76576.t1;Parent=MS.gene76576.t1 |
Gene Sequence |
Protein sequence |