Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23528.t1 | RHN48157.1 | 92.2 | 731 | 35 | 2 | 1 | 731 | 100 | 808 | 0.00E+00 | 1204.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23528.t1 | Q6CEW9 | 36.2 | 550 | 302 | 14 | 179 | 715 | 302 | 815 | 8.8e-83 | 309.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23528.t1 | A0A396HB47 | 92.2 | 731 | 35 | 2 | 1 | 731 | 100 | 808 | 0.0e+00 | 1204.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene23528 | 0.842451 | 2.57E-58 | -1.69E-46 |
| MS.gene049159 | MS.gene23528 | 0.83139 | 1.72E-55 | -1.69E-46 |
| MS.gene049254 | MS.gene23528 | 0.864263 | 1.38E-64 | -1.69E-46 |
| MS.gene049271 | MS.gene23528 | 0.800205 | 1.61E-48 | -1.69E-46 |
| MS.gene049343 | MS.gene23528 | 0.836235 | 1.05E-56 | -1.69E-46 |
| MS.gene049404 | MS.gene23528 | 0.828082 | 1.10E-54 | -1.69E-46 |
| MS.gene049435 | MS.gene23528 | 0.843197 | 1.63E-58 | -1.69E-46 |
| MS.gene049452 | MS.gene23528 | 0.819838 | 9.41E-53 | -1.69E-46 |
| MS.gene049501 | MS.gene23528 | 0.820955 | 5.22E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene23528 | 0.807193 | 5.70E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene23528 | 0.827592 | 1.44E-54 | -1.69E-46 |
| MS.gene049825 | MS.gene23528 | 0.813472 | 2.52E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene23528 | 0.839103 | 1.94E-57 | -1.69E-46 |
| MS.gene049873 | MS.gene23528 | 0.813003 | 3.19E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene23528 | 0.802191 | 6.31E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene23528 | 0.831873 | 1.30E-55 | -1.69E-46 |
| MS.gene050156 | MS.gene23528 | 0.819624 | 1.05E-52 | -1.69E-46 |
| MS.gene050355 | MS.gene23528 | 0.8003 | 1.54E-48 | -1.69E-46 |
| MS.gene050442 | MS.gene23528 | 0.830694 | 2.54E-55 | -1.69E-46 |
| MS.gene05045 | MS.gene23528 | 0.808125 | 3.61E-50 | -1.69E-46 |
| MS.gene050556 | MS.gene23528 | 0.809812 | 1.57E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene23528 | 0.81591 | 7.26E-52 | -1.69E-46 |
| MS.gene050561 | MS.gene23528 | 0.821262 | 4.43E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene23528 | 0.815332 | 9.76E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene23528 | 0.808983 | 2.37E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene23528 | 0.805539 | 1.27E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene23528 | 0.80069 | 1.28E-48 | -1.69E-46 |
| MS.gene050759 | MS.gene23528 | 0.836664 | 8.20E-57 | -1.69E-46 |
| MS.gene050844 | MS.gene23528 | 0.803263 | 3.79E-49 | -1.69E-46 |
| MS.gene050962 | MS.gene23528 | 0.822225 | 2.65E-53 | -1.69E-46 |
| MS.gene051181 | MS.gene23528 | 0.801904 | 7.22E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene23528 | 0.840215 | 9.94E-58 | -1.69E-46 |
| MS.gene051247 | MS.gene23528 | 0.829145 | 6.06E-55 | -1.69E-46 |
| MS.gene051279 | MS.gene23528 | 0.83469 | 2.59E-56 | -1.69E-46 |
| MS.gene051332 | MS.gene23528 | 0.80034 | 1.51E-48 | -1.69E-46 |
| MS.gene051388 | MS.gene23528 | 0.802259 | 6.11E-49 | -1.69E-46 |
| MS.gene051574 | MS.gene23528 | 0.803721 | 3.05E-49 | -1.69E-46 |
| MS.gene051594 | MS.gene23528 | 0.804092 | 2.55E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene23528 | 0.808691 | 2.74E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene23528 | 0.818319 | 2.09E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene23528 | 0.831351 | 1.75E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene23528 | 0.873825 | 1.09E-67 | -1.69E-46 |
| MS.gene051800 | MS.gene23528 | 0.810019 | 1.42E-50 | -1.69E-46 |
| MS.gene052012 | MS.gene23528 | 0.80015 | 1.65E-48 | -1.69E-46 |
| MS.gene052020 | MS.gene23528 | 0.805794 | 1.12E-49 | -1.69E-46 |
| MS.gene052037 | MS.gene23528 | 0.827386 | 1.61E-54 | -1.69E-46 |
| MS.gene052108 | MS.gene23528 | 0.800044 | 1.73E-48 | -1.69E-46 |
| MS.gene052190 | MS.gene23528 | 0.803855 | 2.86E-49 | -1.69E-46 |
| MS.gene052323 | MS.gene23528 | 0.833318 | 5.71E-56 | -1.69E-46 |
| MS.gene052333 | MS.gene23528 | 0.815503 | 8.94E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene23528 | 0.81317 | 2.93E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene23528 | 0.814477 | 1.51E-51 | -1.69E-46 |
| MS.gene052488 | MS.gene23528 | 0.806508 | 7.95E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene23528 | 0.804968 | 1.67E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene23528 | 0.851021 | 1.16E-60 | -1.69E-46 |
| MS.gene052534 | MS.gene23528 | 0.800744 | 1.25E-48 | -1.69E-46 |
| MS.gene052582 | MS.gene23528 | 0.853348 | 2.54E-61 | -1.69E-46 |
| MS.gene052584 | MS.gene23528 | 0.875012 | 4.31E-68 | -1.69E-46 |
| MS.gene052611 | MS.gene23528 | 0.805686 | 1.18E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene23528 | 0.833697 | 4.59E-56 | -1.69E-46 |
| MS.gene052775 | MS.gene23528 | 0.801356 | 9.36E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene23528 | 0.808838 | 2.54E-50 | -1.69E-46 |
| MS.gene052867 | MS.gene23528 | 0.824335 | 8.53E-54 | -1.69E-46 |
| MS.gene053079 | MS.gene23528 | 0.842101 | 3.18E-58 | -1.69E-46 |
| MS.gene05308 | MS.gene23528 | 0.818579 | 1.82E-52 | -1.69E-46 |
| MS.gene053166 | MS.gene23528 | 0.807971 | 3.89E-50 | -1.69E-46 |
| MS.gene053221 | MS.gene23528 | 0.800374 | 1.49E-48 | -1.69E-46 |
| MS.gene053226 | MS.gene23528 | 0.889107 | 3.26E-73 | -1.69E-46 |
| MS.gene053296 | MS.gene23528 | 0.817353 | 3.45E-52 | -1.69E-46 |
| MS.gene053621 | MS.gene23528 | 0.800057 | 1.72E-48 | -1.69E-46 |
| MS.gene05364 | MS.gene23528 | 0.803086 | 4.12E-49 | -1.69E-46 |
| MS.gene053883 | MS.gene23528 | 0.803394 | 3.56E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene23528 | 0.819596 | 1.07E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene23528 | 0.847059 | 1.47E-59 | -1.69E-46 |
| MS.gene05423 | MS.gene23528 | 0.835383 | 1.73E-56 | -1.69E-46 |
| MS.gene054291 | MS.gene23528 | -0.817191 | 3.75E-52 | -1.69E-46 |
| MS.gene054467 | MS.gene23528 | 0.811367 | 7.25E-51 | -1.69E-46 |
| MS.gene054479 | MS.gene23528 | 0.813474 | 2.51E-51 | -1.69E-46 |
| MS.gene05447 | MS.gene23528 | 0.801978 | 6.98E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene23528 | 0.807704 | 4.44E-50 | -1.69E-46 |
| MS.gene054576 | MS.gene23528 | 0.844633 | 6.70E-59 | -1.69E-46 |
| MS.gene05458 | MS.gene23528 | 0.813843 | 2.08E-51 | -1.69E-46 |
| MS.gene054651 | MS.gene23528 | 0.874221 | 8.00E-68 | -1.69E-46 |
| MS.gene054658 | MS.gene23528 | 0.800589 | 1.34E-48 | -1.69E-46 |
| MS.gene054775 | MS.gene23528 | 0.851859 | 6.74E-61 | -1.69E-46 |
| MS.gene054967 | MS.gene23528 | 0.809328 | 2.00E-50 | -1.69E-46 |
| MS.gene054991 | MS.gene23528 | 0.83126 | 1.85E-55 | -1.69E-46 |
| MS.gene055166 | MS.gene23528 | 0.8144 | 1.57E-51 | -1.69E-46 |
| MS.gene055222 | MS.gene23528 | 0.804071 | 2.58E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene23528 | 0.824755 | 6.80E-54 | -1.69E-46 |
| MS.gene055228 | MS.gene23528 | 0.831186 | 1.93E-55 | -1.69E-46 |
| MS.gene055466 | MS.gene23528 | 0.809607 | 1.74E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene23528 | 0.801099 | 1.06E-48 | -1.69E-46 |
| MS.gene055513 | MS.gene23528 | 0.822165 | 2.74E-53 | -1.69E-46 |
| MS.gene055586 | MS.gene23528 | 0.821014 | 5.06E-53 | -1.69E-46 |
| MS.gene055589 | MS.gene23528 | 0.842593 | 2.35E-58 | -1.69E-46 |
| MS.gene055725 | MS.gene23528 | 0.804211 | 2.41E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene23528 | 0.840617 | 7.81E-58 | -1.69E-46 |
| MS.gene055808 | MS.gene23528 | 0.800945 | 1.14E-48 | -1.69E-46 |
| MS.gene055818 | MS.gene23528 | 0.829365 | 5.36E-55 | -1.69E-46 |
| MS.gene055926 | MS.gene23528 | 0.827089 | 1.90E-54 | -1.69E-46 |
| MS.gene05604 | MS.gene23528 | 0.804198 | 2.42E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene23528 | 0.865426 | 5.96E-65 | -1.69E-46 |
| MS.gene056162 | MS.gene23528 | 0.833223 | 6.04E-56 | -1.69E-46 |
| MS.gene056173 | MS.gene23528 | 0.846509 | 2.08E-59 | -1.69E-46 |
| MS.gene056174 | MS.gene23528 | 0.848681 | 5.25E-60 | -1.69E-46 |
| MS.gene056215 | MS.gene23528 | 0.807151 | 5.81E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene23528 | 0.803536 | 3.33E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene23528 | 0.801959 | 7.04E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene23528 | 0.837913 | 3.93E-57 | -1.69E-46 |
| MS.gene056373 | MS.gene23528 | 0.80589 | 1.07E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene23528 | 0.81173 | 6.05E-51 | -1.69E-46 |
| MS.gene056507 | MS.gene23528 | 0.808166 | 3.54E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene23528 | 0.826867 | 2.14E-54 | -1.69E-46 |
| MS.gene05659 | MS.gene23528 | 0.809846 | 1.55E-50 | -1.69E-46 |
| MS.gene056776 | MS.gene23528 | 0.817122 | 3.88E-52 | -1.69E-46 |
| MS.gene05686 | MS.gene23528 | 0.824826 | 6.54E-54 | -1.69E-46 |
| MS.gene05689 | MS.gene23528 | 0.804456 | 2.14E-49 | -1.69E-46 |
| MS.gene05690 | MS.gene23528 | 0.812526 | 4.06E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene23528 | 0.800945 | 1.14E-48 | -1.69E-46 |
| MS.gene057208 | MS.gene23528 | 0.83877 | 2.36E-57 | -1.69E-46 |
| MS.gene057314 | MS.gene23528 | 0.836506 | 8.99E-57 | -1.69E-46 |
| MS.gene057414 | MS.gene23528 | 0.809589 | 1.76E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene23528 | 0.846208 | 2.51E-59 | -1.69E-46 |
| MS.gene057598 | MS.gene23528 | 0.821728 | 3.46E-53 | -1.69E-46 |
| MS.gene057855 | MS.gene23528 | 0.803358 | 3.62E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene23528 | 0.839738 | 1.32E-57 | -1.69E-46 |
| MS.gene057915 | MS.gene23528 | 0.849984 | 2.28E-60 | -1.69E-46 |
| MS.gene058010 | MS.gene23528 | 0.822425 | 2.39E-53 | -1.69E-46 |
| MS.gene058037 | MS.gene23528 | 0.822409 | 2.41E-53 | -1.69E-46 |
| MS.gene058548 | MS.gene23528 | 0.811728 | 6.05E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene23528 | 0.834667 | 2.63E-56 | -1.69E-46 |
| MS.gene058636 | MS.gene23528 | 0.800183 | 1.62E-48 | -1.69E-46 |
| MS.gene058668 | MS.gene23528 | 0.80076 | 1.24E-48 | -1.69E-46 |
| MS.gene058783 | MS.gene23528 | 0.807963 | 3.91E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene23528 | 0.819701 | 1.01E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene23528 | 0.860676 | 1.75E-63 | -1.69E-46 |
| MS.gene059084 | MS.gene23528 | 0.804056 | 2.59E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene23528 | 0.835797 | 1.36E-56 | -1.69E-46 |
| MS.gene059570 | MS.gene23528 | 0.833468 | 5.24E-56 | -1.69E-46 |
| MS.gene059601 | MS.gene23528 | 0.807972 | 3.89E-50 | -1.69E-46 |
| MS.gene059625 | MS.gene23528 | 0.855215 | 7.33E-62 | -1.69E-46 |
| MS.gene059725 | MS.gene23528 | 0.806004 | 1.02E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene23528 | 0.812598 | 3.91E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene23528 | 0.814392 | 1.58E-51 | -1.69E-46 |
| MS.gene060167 | MS.gene23528 | 0.802669 | 5.03E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene23528 | 0.803564 | 3.28E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene23528 | 0.825473 | 4.60E-54 | -1.69E-46 |
| MS.gene060373 | MS.gene23528 | 0.80278 | 4.77E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene23528 | 0.823036 | 1.72E-53 | -1.69E-46 |
| MS.gene060521 | MS.gene23528 | 0.829416 | 5.21E-55 | -1.69E-46 |
| MS.gene06052 | MS.gene23528 | 0.835316 | 1.80E-56 | -1.69E-46 |
| MS.gene060572 | MS.gene23528 | 0.831775 | 1.38E-55 | -1.69E-46 |
| MS.gene060587 | MS.gene23528 | 0.819246 | 1.28E-52 | -1.69E-46 |
| MS.gene060634 | MS.gene23528 | -0.805255 | 1.46E-49 | -1.69E-46 |
| MS.gene060690 | MS.gene23528 | 0.803633 | 3.18E-49 | -1.69E-46 |
| MS.gene060777 | MS.gene23528 | 0.817862 | 2.65E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene23528 | 0.804401 | 2.20E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene23528 | 0.819537 | 1.10E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene23528 | 0.813301 | 2.74E-51 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23528.t1 | MTR_7g096260 | 92.202 | 731 | 35 | 2 | 1 | 731 | 1 | 709 | 0.0 | 1274 |
| MS.gene23528.t1 | MTR_7g096260 | 92.202 | 731 | 35 | 2 | 1 | 731 | 15 | 723 | 0.0 | 1274 |
| MS.gene23528.t1 | MTR_7g094660 | 82.745 | 736 | 96 | 5 | 1 | 731 | 156 | 865 | 0.0 | 1164 |
| MS.gene23528.t1 | MTR_7g094670 | 72.379 | 601 | 127 | 7 | 1 | 593 | 722 | 1291 | 0.0 | 751 |
| MS.gene23528.t1 | MTR_7g094670 | 69.392 | 526 | 78 | 6 | 197 | 718 | 1227 | 1673 | 0.0 | 675 |
| MS.gene23528.t1 | MTR_2g018390 | 54.873 | 472 | 87 | 5 | 1 | 452 | 75 | 440 | 1.56e-135 | 408 |
| MS.gene23528.t1 | MTR_1g061870 | 31.088 | 193 | 111 | 7 | 499 | 684 | 94 | 271 | 2.90e-13 | 73.6 |
| MS.gene23528.t1 | MTR_1g097440 | 30.729 | 192 | 115 | 8 | 509 | 694 | 119 | 298 | 2.31e-12 | 70.9 |
| MS.gene23528.t1 | MTR_7g102730 | 31.088 | 193 | 109 | 8 | 501 | 684 | 89 | 266 | 3.82e-12 | 70.1 |
| MS.gene23528.t1 | MTR_7g102730 | 26.577 | 222 | 128 | 7 | 484 | 686 | 166 | 371 | 1.99e-11 | 67.8 |
| MS.gene23528.t1 | MTR_6g040190 | 31.905 | 210 | 124 | 10 | 509 | 713 | 114 | 309 | 6.77e-12 | 69.3 |
| MS.gene23528.t1 | MTR_8g092550 | 28.497 | 193 | 112 | 7 | 501 | 679 | 196 | 376 | 1.57e-11 | 68.2 |
| MS.gene23528.t1 | MTR_4g085540 | 29.358 | 218 | 117 | 7 | 503 | 701 | 208 | 407 | 1.65e-11 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23528.t1 | AT4G19610 | 49.860 | 716 | 285 | 12 | 4 | 701 | 137 | 796 | 0.0 | 618 |
| MS.gene23528.t1 | AT5G08695 | 43.423 | 631 | 269 | 12 | 17 | 635 | 107 | 661 | 9.24e-144 | 437 |
| MS.gene23528.t1 | AT5G05720 | 32.781 | 302 | 139 | 9 | 428 | 720 | 204 | 450 | 4.64e-29 | 121 |
| MS.gene23528.t1 | AT4G34110 | 29.384 | 211 | 112 | 7 | 510 | 701 | 217 | 409 | 1.49e-13 | 74.7 |
| MS.gene23528.t1 | AT2G36660 | 24.528 | 318 | 177 | 11 | 390 | 689 | 114 | 386 | 6.74e-13 | 72.4 |
| MS.gene23528.t1 | AT1G71770 | 23.902 | 410 | 239 | 14 | 180 | 579 | 61 | 407 | 7.78e-12 | 69.3 |
| MS.gene23528.t1 | AT1G71770 | 23.902 | 410 | 239 | 14 | 180 | 579 | 61 | 407 | 7.78e-12 | 69.3 |
| MS.gene23528.t1 | AT2G23350 | 28.440 | 218 | 119 | 7 | 503 | 701 | 220 | 419 | 1.06e-11 | 68.9 |
| MS.gene23528.t1 | AT1G49760 | 28.829 | 222 | 119 | 9 | 501 | 701 | 215 | 418 | 3.36e-11 | 67.0 |
| MS.gene23528.t1 | AT1G49760 | 28.829 | 222 | 119 | 9 | 501 | 701 | 215 | 418 | 3.36e-11 | 67.0 |
| MS.gene23528.t1 | AT3G16380 | 28.505 | 214 | 137 | 8 | 510 | 719 | 114 | 315 | 4.14e-11 | 66.6 |
| MS.gene23528.t1 | AT1G47490 | 25.000 | 216 | 135 | 5 | 509 | 705 | 198 | 405 | 6.27e-11 | 65.9 |
| MS.gene23528.t1 | AT1G47500 | 28.902 | 173 | 104 | 4 | 509 | 670 | 200 | 364 | 7.52e-11 | 65.5 |
Find 138 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACGTTTCTTATCGGATTT+AGG | 0.149160 | 7.3:+15090130 | None:intergenic |
| CATCTGTTGTCTTGAAATTT+AGG | 0.160094 | 7.3:+15081336 | None:intergenic |
| CTTGCGGAGGGTAAAGTTTA+TGG | 0.210603 | 7.3:-15086128 | MS.gene23528:CDS |
| TGTTACCTGGCTGCAAATTC+TGG | 0.224005 | 7.3:+15089463 | None:intergenic |
| GCAGAGATGTTTGGGAAATT+TGG | 0.242090 | 7.3:-15086038 | MS.gene23528:CDS |
| GTTTGGGAAATTTGGTAGTT+TGG | 0.255183 | 7.3:-15086030 | MS.gene23528:CDS |
| AAGGAAATATGAAATTTAAA+AGG | 0.260205 | 7.3:-15080230 | MS.gene23528:CDS |
| GTTTGCAACTGATGTAATTT+TGG | 0.263662 | 7.3:+15090198 | None:intergenic |
| CTTCTTGGGGTTCTTTCAAT+AGG | 0.266349 | 7.3:+15089920 | None:intergenic |
| TTAAAATTGCCAATGAAGTT+TGG | 0.272537 | 7.3:-15080620 | MS.gene23528:CDS |
| ACTGTTGAGCACCACTTCTT+GGG | 0.275684 | 7.3:+15089906 | None:intergenic |
| AGAAATTACGTGGTCGAATA+TGG | 0.281071 | 7.3:+15089734 | None:intergenic |
| CTTAAGCTCACGTTTCTTAT+CGG | 0.286303 | 7.3:+15090123 | None:intergenic |
| GAAACTCCTTTCTTATGTTC+TGG | 0.295455 | 7.3:+15089788 | None:intergenic |
| AGGAGCCCACTCCAAGTATA+AGG | 0.309976 | 7.3:+15082545 | None:intergenic |
| AATGAACTTGCAGAGATGTT+TGG | 0.316310 | 7.3:-15086047 | MS.gene23528:CDS |
| CACGTTTCTTATCGGATTTA+GGG | 0.316732 | 7.3:+15090131 | None:intergenic |
| AACTGTTGAGCACCACTTCT+TGG | 0.317716 | 7.3:+15089905 | None:intergenic |
| TGTTAGTAAAAGTGATTTAC+TGG | 0.319440 | 7.3:-15086264 | MS.gene23528:CDS |
| GCAGCAACATCATCAGCTTC+TGG | 0.325515 | 7.3:+15086239 | None:intergenic |
| ATGAACTTGCAGAGATGTTT+GGG | 0.338200 | 7.3:-15086046 | MS.gene23528:CDS |
| CTATGATTTCCAAACTTCAT+TGG | 0.341580 | 7.3:+15080611 | None:intergenic |
| AGACAGTTATTTAGCCCATT+TGG | 0.354222 | 7.3:-15080802 | MS.gene23528:CDS |
| TTCTTGGGGTTCTTTCAATA+GGG | 0.359760 | 7.3:+15089921 | None:intergenic |
| GTCGGACAATTCAATCTTCC+AGG | 0.365242 | 7.3:-15088202 | MS.gene23528:CDS |
| TGCTTGGTTGTTACCATCAT+TGG | 0.366633 | 7.3:+15090237 | None:intergenic |
| CAACCAAGCAACATTGAATA+AGG | 0.367739 | 7.3:-15090224 | MS.gene23528:CDS |
| TGATGGAGTAATCTCTGATA+TGG | 0.381279 | 7.3:-15090098 | MS.gene23528:CDS |
| TGTTGTCTCTTCTGTTGTTA+AGG | 0.399668 | 7.3:-15088826 | MS.gene23528:CDS |
| AATTTAGGTTCTTGACAAAC+AGG | 0.403067 | 7.3:+15081351 | None:intergenic |
| GTCTCTTCTGTTGTTAAGGA+TGG | 0.409210 | 7.3:-15088822 | MS.gene23528:CDS |
| GAAGAGCATTTCAGTCAGTT+TGG | 0.410037 | 7.3:-15089565 | MS.gene23528:CDS |
| CTTTCAAGCACCCACTTGTA+TGG | 0.415787 | 7.3:-15080530 | MS.gene23528:CDS |
| TCTTGTCTTGGTAAATTAGC+TGG | 0.416143 | 7.3:+15088159 | None:intergenic |
| TGTTGCTGCAAATGTTGCTC+TGG | 0.423211 | 7.3:-15086225 | MS.gene23528:CDS |
| ATAGTAATCACCTGGCCAAA+TGG | 0.426128 | 7.3:+15080787 | None:intergenic |
| ACTTGTGAGTCGCTTAAGAT+AGG | 0.434521 | 7.3:+15090172 | None:intergenic |
| CTGTTGCAGTGAGGAGGAAC+TGG | 0.438578 | 7.3:-15089587 | MS.gene23528:intron |
| TCTCCTTATTCAATGTTGCT+TGG | 0.446517 | 7.3:+15090221 | None:intergenic |
| TGGAGTGAATGTGGAGTCTT+CGG | 0.457021 | 7.3:-15086156 | MS.gene23528:CDS |
| GCTCAATTTAATGAACATAG+TGG | 0.467944 | 7.3:-15080306 | MS.gene23528:CDS |
| ATTCACTTGAGACTTATCAT+TGG | 0.468768 | 7.3:+15089841 | None:intergenic |
| GTTATTTAGCCCATTTGGCC+AGG | 0.472872 | 7.3:-15080797 | MS.gene23528:intron |
| GACAACAGATGAGGGTTTGA+GGG | 0.476637 | 7.3:-15081324 | MS.gene23528:CDS |
| AAAGCAGCTTTAGCTTCTGC+TGG | 0.476978 | 7.3:+15083293 | None:intergenic |
| TAGTAATCACCTGGCCAAAT+GGG | 0.481132 | 7.3:+15080788 | None:intergenic |
| TGTGGAGTATGTTACTCAGC+AGG | 0.483709 | 7.3:-15080576 | MS.gene23528:CDS |
| CCACTTGTATGGCAGACATC+TGG | 0.484106 | 7.3:-15080519 | MS.gene23528:intron |
| ATACTAACTTATCCAAGAAA+AGG | 0.484272 | 7.3:-15080275 | MS.gene23528:CDS |
| AGACAACAGATGAGGGTTTG+AGG | 0.485163 | 7.3:-15081325 | MS.gene23528:CDS |
| TTCTTCAGGTCATGCAACCT+CGG | 0.490613 | 7.3:-15090300 | None:intergenic |
| AACAACGAAGAGAGGAAGAA+AGG | 0.496906 | 7.3:-15087479 | MS.gene23528:CDS |
| TGCTCCCTTATACTTGGAGT+GGG | 0.497665 | 7.3:-15082550 | MS.gene23528:CDS |
| TCAGTTTGGCAGTGTCTCAC+AGG | 0.497833 | 7.3:-15089551 | MS.gene23528:CDS |
| ATCAGATGTTGATATTGATC+CGG | 0.499899 | 7.3:-15082415 | MS.gene23528:CDS |
| TATTGATCCGGACAGAATAG+AGG | 0.504104 | 7.3:-15082403 | MS.gene23528:intron |
| TGGTCGAATATGGCAGATTA+CGG | 0.507492 | 7.3:+15089744 | None:intergenic |
| TAGGGCTGCTCCCTTATACT+TGG | 0.507845 | 7.3:-15082556 | MS.gene23528:CDS |
| GTCTCAAGTGAATGCAATTG+AGG | 0.508138 | 7.3:-15089831 | MS.gene23528:CDS |
| TCTTCAGGTCATGCAACCTC+GGG | 0.508661 | 7.3:-15090299 | None:intergenic |
| GAACACAAACAAGACACTCT+TGG | 0.509525 | 7.3:+15088795 | None:intergenic |
| GGTTCATTTGCTTGTTCATG+AGG | 0.514266 | 7.3:-15089530 | MS.gene23528:CDS |
| CCAACATTCTTGACATGACA+AGG | 0.514376 | 7.3:+15080913 | None:intergenic |
| GGTCAAACCTCTATTCTGTC+CGG | 0.514475 | 7.3:+15082396 | None:intergenic |
| AGGAAAGCAGCTGAAGCTAA+AGG | 0.515410 | 7.3:-15087459 | MS.gene23528:CDS |
| CAGTTCCAGAATTTGCAGCC+AGG | 0.515828 | 7.3:-15089468 | MS.gene23528:intron |
| GAAGACCAAGAAAATACTGT+TGG | 0.520732 | 7.3:-15089875 | MS.gene23528:CDS |
| TTTCAGTAAACACATGAAAG+AGG | 0.521106 | 7.3:-15081297 | MS.gene23528:CDS |
| AGTGAATGCAATTGAGGAAG+AGG | 0.522200 | 7.3:-15089825 | MS.gene23528:CDS |
| ATGAAGTTTGGAAATCATAG+AGG | 0.524093 | 7.3:-15080608 | MS.gene23528:CDS |
| CTGTTGAGCACCACTTCTTG+GGG | 0.524172 | 7.3:+15089907 | None:intergenic |
| GAATGATGGAATTGCTGAAA+AGG | 0.528711 | 7.3:-15082478 | MS.gene23528:CDS |
| AGAGAGCCTTACTCTTGTCT+TGG | 0.528907 | 7.3:+15088147 | None:intergenic |
| GGAGCCCACTCCAAGTATAA+GGG | 0.529811 | 7.3:+15082546 | None:intergenic |
| CCAAGAAAATACTGTTGGAA+AGG | 0.530760 | 7.3:-15089870 | MS.gene23528:CDS |
| AAAAGAAGGTGAGAGTTTGA+AGG | 0.532141 | 7.3:-15080349 | MS.gene23528:CDS |
| GAATAGTCTGTTCATGCGCC+AGG | 0.533487 | 7.3:-15087421 | MS.gene23528:CDS |
| CTGCTCCCTTATACTTGGAG+TGG | 0.533683 | 7.3:-15082551 | MS.gene23528:CDS |
| ACTTCAGTTGTATCCAATGA+TGG | 0.534861 | 7.3:-15090250 | MS.gene23528:CDS |
| TCAAATCCAGAACATAAGAA+AGG | 0.535333 | 7.3:-15089794 | MS.gene23528:CDS |
| AAACGTGAGCTTAAGCATGA+TGG | 0.535732 | 7.3:-15090115 | MS.gene23528:CDS |
| TGGCGATGACAACAGTGATT+CGG | 0.537975 | 7.3:-15090014 | MS.gene23528:CDS |
| GCCATCAGTATGTTAGATGA+AGG | 0.538296 | 7.3:-15080249 | MS.gene23528:CDS |
| GTGATTGAGAGAGCAAAAGA+AGG | 0.540455 | 7.3:-15080363 | MS.gene23528:CDS |
| CCTTGTCATGTCAAGAATGT+TGG | 0.540487 | 7.3:-15080913 | MS.gene23528:CDS |
| CTCGACAAGAACATTGGCCC+TGG | 0.547145 | 7.3:-15085991 | MS.gene23528:intron |
| GTGAGTCGCTTAAGATAGGA+TGG | 0.549371 | 7.3:+15090176 | None:intergenic |
| TCCTTCATCTAACATACTGA+TGG | 0.552737 | 7.3:+15080248 | None:intergenic |
| AAATTTGCCATATGGTGCTA+CGG | 0.556219 | 7.3:-15086072 | MS.gene23528:CDS |
| GTGAATGCAATTGAGGAAGA+GGG | 0.558261 | 7.3:-15089824 | MS.gene23528:CDS |
| CTCGGGCAATGTCTAAGCTG+TGG | 0.560677 | 7.3:-15090282 | MS.gene23528:CDS |
| GTCTTCGGAGGAGCTTGCGG+AGG | 0.561229 | 7.3:-15086141 | MS.gene23528:CDS |
| TTGGCAGACATGTGATGGGT+TGG | 0.562983 | 7.3:-15088857 | MS.gene23528:intron |
| TAAGGAAACATACTGTATCC+TGG | 0.563109 | 7.3:+15087403 | None:intergenic |
| GAACAGACTATTCCATGCTC+TGG | 0.563315 | 7.3:+15087431 | None:intergenic |
| TAACATGCAATAATCTCCCC+TGG | 0.565672 | 7.3:+15088184 | None:intergenic |
| AGTGATATTAGAGAAAGATG+TGG | 0.567788 | 7.3:-15082445 | MS.gene23528:CDS |
| GTTATTCTGTTGCAGTGAGG+AGG | 0.574934 | 7.3:-15089593 | MS.gene23528:intron |
| AGATTACAGAAAACGTTACT+CGG | 0.575640 | 7.3:-15086295 | MS.gene23528:CDS |
| AGGGCCAATGTTCTTGTCGA+GGG | 0.575749 | 7.3:+15085993 | None:intergenic |
| GTTGCTGCAAATGTTGCTCT+GGG | 0.579706 | 7.3:-15086224 | MS.gene23528:CDS |
| AACTCTCAAACAACGAAGAG+AGG | 0.585064 | 7.3:-15087487 | MS.gene23528:CDS |
| TCGGGCAATGTCTAAGCTGT+GGG | 0.586421 | 7.3:-15090281 | MS.gene23528:CDS |
| TCGGACAATTCAATCTTCCA+GGG | 0.587035 | 7.3:-15088201 | MS.gene23528:CDS |
| CCAGATGTCTGCCATACAAG+TGG | 0.588396 | 7.3:+15080519 | None:intergenic |
| AATTTCAAGACAACAGATGA+GGG | 0.589469 | 7.3:-15081332 | MS.gene23528:CDS |
| ATTGAAAGAACCCCAAGAAG+TGG | 0.590316 | 7.3:-15089917 | MS.gene23528:CDS |
| TCTCCCCTCGACAAGAACAT+TGG | 0.594980 | 7.3:-15085997 | MS.gene23528:CDS |
| TATCAGGGCGCTAGAAGAGT+CGG | 0.598556 | 7.3:-15088220 | MS.gene23528:intron |
| GAAAACGTTACTCGGAAACA+TGG | 0.599656 | 7.3:-15086287 | MS.gene23528:CDS |
| GTGTATTGGCAGACATGTGA+TGG | 0.601599 | 7.3:-15088862 | MS.gene23528:intron |
| TTCAGTAAACACATGAAAGA+GGG | 0.602870 | 7.3:-15081296 | MS.gene23528:CDS |
| GTTTACATGTTGTAGGAACA+AGG | 0.608786 | 7.3:-15087523 | MS.gene23528:intron |
| CAGGGCCAATGTTCTTGTCG+AGG | 0.608873 | 7.3:+15085992 | None:intergenic |
| TAACTTATCCAAGAAAAGGA+AGG | 0.610315 | 7.3:-15080271 | MS.gene23528:CDS |
| GAGGATACAAAACGATCCAA+AGG | 0.611415 | 7.3:-15089511 | MS.gene23528:CDS |
| CTAAAGGAGATACCAGAGCA+TGG | 0.614779 | 7.3:-15087443 | MS.gene23528:CDS |
| AAATTTCAAGACAACAGATG+AGG | 0.617949 | 7.3:-15081333 | MS.gene23528:CDS |
| TTTGGGCTAAGAACATCGGA+AGG | 0.628067 | 7.3:+15082525 | None:intergenic |
| TTTCAAGAGCAAATTGACAA+CGG | 0.632803 | 7.3:-15090071 | MS.gene23528:CDS |
| GGAGTCTTCGGAGGAGCTTG+CGG | 0.633050 | 7.3:-15086144 | MS.gene23528:CDS |
| CAGATGTCTGCCATACAAGT+GGG | 0.638287 | 7.3:+15080520 | None:intergenic |
| ATTTAGGTTCTTGACAAACA+GGG | 0.641727 | 7.3:+15081352 | None:intergenic |
| GTTAGTAAAAGTGATTTACT+GGG | 0.646285 | 7.3:-15086263 | MS.gene23528:CDS |
| TCTTCGGAGGAGCTTGCGGA+GGG | 0.651971 | 7.3:-15086140 | MS.gene23528:CDS |
| GTAAACACATGAAAGAGGGA+CGG | 0.658062 | 7.3:-15081292 | MS.gene23528:CDS |
| GGGCCAATGTTCTTGTCGAG+GGG | 0.659968 | 7.3:+15085994 | None:intergenic |
| TGAATGCAATTGAGGAAGAG+GGG | 0.661757 | 7.3:-15089823 | MS.gene23528:CDS |
| CACAGCTTAGACATTGCCCG+AGG | 0.675080 | 7.3:+15090283 | None:intergenic |
| TGTATTGGCAGACATGTGAT+GGG | 0.677094 | 7.3:-15088861 | MS.gene23528:intron |
| AGTGAATGTGGAGTCTTCGG+AGG | 0.678167 | 7.3:-15086153 | MS.gene23528:CDS |
| GGAGTATGTTACTCAGCAGG+AGG | 0.710455 | 7.3:-15080573 | MS.gene23528:CDS |
| TTACGGACAAACAGTCGACA+CGG | 0.713491 | 7.3:+15089761 | None:intergenic |
| CGGACAATTCAATCTTCCAG+GGG | 0.713830 | 7.3:-15088200 | MS.gene23528:CDS |
| ACTGAACATGAAGAAAATCG+TGG | 0.715114 | 7.3:-15089950 | MS.gene23528:CDS |
| TGTTGTAGGAACAAGGACCA+AGG | 0.722992 | 7.3:-15087516 | MS.gene23528:intron |
| GAAAGCAGTGATGATGACAA+TGG | 0.725829 | 7.3:-15090034 | MS.gene23528:CDS |
| AGAGCAAATTGACAACGGAG+TGG | 0.732742 | 7.3:-15090066 | MS.gene23528:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 15080221 | 15090311 | 15080221 | ID=MS.gene23528 |
| chr7.3 | mRNA | 15080221 | 15090311 | 15080221 | ID=MS.gene23528.t1;Parent=MS.gene23528 |
| chr7.3 | exon | 15089743 | 15090311 | 15089743 | ID=MS.gene23528.t1.exon1;Parent=MS.gene23528.t1 |
| chr7.3 | CDS | 15089743 | 15090311 | 15089743 | ID=cds.MS.gene23528.t1;Parent=MS.gene23528.t1 |
| chr7.3 | exon | 15089469 | 15089600 | 15089469 | ID=MS.gene23528.t1.exon2;Parent=MS.gene23528.t1 |
| chr7.3 | CDS | 15089469 | 15089600 | 15089469 | ID=cds.MS.gene23528.t1;Parent=MS.gene23528.t1 |
| chr7.3 | exon | 15088810 | 15088872 | 15088810 | ID=MS.gene23528.t1.exon3;Parent=MS.gene23528.t1 |
| chr7.3 | CDS | 15088810 | 15088872 | 15088810 | ID=cds.MS.gene23528.t1;Parent=MS.gene23528.t1 |
| chr7.3 | exon | 15088159 | 15088236 | 15088159 | ID=MS.gene23528.t1.exon4;Parent=MS.gene23528.t1 |
| chr7.3 | CDS | 15088159 | 15088236 | 15088159 | ID=cds.MS.gene23528.t1;Parent=MS.gene23528.t1 |
| chr7.3 | exon | 15087416 | 15087530 | 15087416 | ID=MS.gene23528.t1.exon5;Parent=MS.gene23528.t1 |
| chr7.3 | CDS | 15087416 | 15087530 | 15087416 | ID=cds.MS.gene23528.t1;Parent=MS.gene23528.t1 |
| chr7.3 | exon | 15085992 | 15086315 | 15085992 | ID=MS.gene23528.t1.exon6;Parent=MS.gene23528.t1 |
| chr7.3 | CDS | 15085992 | 15086315 | 15085992 | ID=cds.MS.gene23528.t1;Parent=MS.gene23528.t1 |
| chr7.3 | exon | 15083266 | 15083330 | 15083266 | ID=MS.gene23528.t1.exon7;Parent=MS.gene23528.t1 |
| chr7.3 | CDS | 15083266 | 15083330 | 15083266 | ID=cds.MS.gene23528.t1;Parent=MS.gene23528.t1 |
| chr7.3 | exon | 15082404 | 15082575 | 15082404 | ID=MS.gene23528.t1.exon8;Parent=MS.gene23528.t1 |
| chr7.3 | CDS | 15082404 | 15082575 | 15082404 | ID=cds.MS.gene23528.t1;Parent=MS.gene23528.t1 |
| chr7.3 | exon | 15081277 | 15081381 | 15081277 | ID=MS.gene23528.t1.exon9;Parent=MS.gene23528.t1 |
| chr7.3 | CDS | 15081277 | 15081381 | 15081277 | ID=cds.MS.gene23528.t1;Parent=MS.gene23528.t1 |
| chr7.3 | exon | 15081087 | 15081188 | 15081087 | ID=MS.gene23528.t1.exon10;Parent=MS.gene23528.t1 |
| chr7.3 | CDS | 15081087 | 15081188 | 15081087 | ID=cds.MS.gene23528.t1;Parent=MS.gene23528.t1 |
| chr7.3 | exon | 15080798 | 15080971 | 15080798 | ID=MS.gene23528.t1.exon11;Parent=MS.gene23528.t1 |
| chr7.3 | CDS | 15080798 | 15080971 | 15080798 | ID=cds.MS.gene23528.t1;Parent=MS.gene23528.t1 |
| chr7.3 | exon | 15080520 | 15080651 | 15080520 | ID=MS.gene23528.t1.exon12;Parent=MS.gene23528.t1 |
| chr7.3 | CDS | 15080520 | 15080651 | 15080520 | ID=cds.MS.gene23528.t1;Parent=MS.gene23528.t1 |
| chr7.3 | exon | 15080221 | 15080385 | 15080221 | ID=MS.gene23528.t1.exon13;Parent=MS.gene23528.t1 |
| chr7.3 | CDS | 15080221 | 15080385 | 15080221 | ID=cds.MS.gene23528.t1;Parent=MS.gene23528.t1 |
| Gene Sequence |
| Protein sequence |
