Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23520.t1 | RHN48157.1 | 90.5 | 809 | 72 | 1 | 5 | 813 | 5 | 808 | 0.00E+00 | 1326.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23520.t1 | Q6CEW9 | 33.5 | 831 | 450 | 22 | 6 | 797 | 49 | 815 | 8.8e-92 | 339.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23520.t1 | A0A396HB47 | 90.5 | 809 | 72 | 1 | 5 | 813 | 5 | 808 | 0.0e+00 | 1326.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene23520 | 0.819142 | 1.36E-52 | -1.69E-46 |
MS.gene049254 | MS.gene23520 | 0.854116 | 1.52E-61 | -1.69E-46 |
MS.gene049343 | MS.gene23520 | 0.831061 | 2.07E-55 | -1.69E-46 |
MS.gene049452 | MS.gene23520 | 0.806213 | 9.17E-50 | -1.69E-46 |
MS.gene049499 | MS.gene23520 | 0.806813 | 6.86E-50 | -1.69E-46 |
MS.gene049501 | MS.gene23520 | 0.827838 | 1.25E-54 | -1.69E-46 |
MS.gene049824 | MS.gene23520 | 0.803405 | 3.54E-49 | -1.69E-46 |
MS.gene049825 | MS.gene23520 | 0.813541 | 2.43E-51 | -1.69E-46 |
MS.gene049850 | MS.gene23520 | 0.829631 | 4.62E-55 | -1.69E-46 |
MS.gene049873 | MS.gene23520 | 0.813307 | 2.74E-51 | -1.69E-46 |
MS.gene050026 | MS.gene23520 | 0.81326 | 2.80E-51 | -1.69E-46 |
MS.gene050156 | MS.gene23520 | 0.824623 | 7.30E-54 | -1.69E-46 |
MS.gene050799 | MS.gene23520 | 0.80419 | 2.43E-49 | -1.69E-46 |
MS.gene051198 | MS.gene23520 | 0.809297 | 2.03E-50 | -1.69E-46 |
MS.gene051700 | MS.gene23520 | 0.810358 | 1.20E-50 | -1.69E-46 |
MS.gene051719 | MS.gene23520 | 0.805649 | 1.21E-49 | -1.69E-46 |
MS.gene051720 | MS.gene23520 | 0.816496 | 5.37E-52 | -1.69E-46 |
MS.gene051744 | MS.gene23520 | 0.841096 | 5.85E-58 | -1.69E-46 |
MS.gene052012 | MS.gene23520 | 0.800641 | 1.31E-48 | -1.69E-46 |
MS.gene052463 | MS.gene23520 | 0.801734 | 7.83E-49 | -1.69E-46 |
MS.gene052516 | MS.gene23520 | 0.805567 | 1.25E-49 | -1.69E-46 |
MS.gene052518 | MS.gene23520 | 0.805636 | 1.21E-49 | -1.69E-46 |
MS.gene052519 | MS.gene23520 | 0.860588 | 1.86E-63 | -1.69E-46 |
MS.gene052534 | MS.gene23520 | 0.822171 | 2.73E-53 | -1.69E-46 |
MS.gene052582 | MS.gene23520 | 0.842121 | 3.14E-58 | -1.69E-46 |
MS.gene052584 | MS.gene23520 | 0.853192 | 2.81E-61 | -1.69E-46 |
MS.gene052773 | MS.gene23520 | 0.832552 | 8.86E-56 | -1.69E-46 |
MS.gene052863 | MS.gene23520 | 0.813696 | 2.25E-51 | -1.69E-46 |
MS.gene053079 | MS.gene23520 | 0.816578 | 5.15E-52 | -1.69E-46 |
MS.gene053122 | MS.gene23520 | 0.809309 | 2.02E-50 | -1.69E-46 |
MS.gene053226 | MS.gene23520 | 0.858395 | 8.48E-63 | -1.69E-46 |
MS.gene05415 | MS.gene23520 | 0.824244 | 8.96E-54 | -1.69E-46 |
MS.gene05423 | MS.gene23520 | 0.819857 | 9.32E-53 | -1.69E-46 |
MS.gene054651 | MS.gene23520 | 0.86021 | 2.42E-63 | -1.69E-46 |
MS.gene054775 | MS.gene23520 | 0.818775 | 1.64E-52 | -1.69E-46 |
MS.gene054991 | MS.gene23520 | 0.819958 | 8.84E-53 | -1.69E-46 |
MS.gene055166 | MS.gene23520 | 0.802812 | 4.70E-49 | -1.69E-46 |
MS.gene055228 | MS.gene23520 | 0.806331 | 8.66E-50 | -1.69E-46 |
MS.gene055466 | MS.gene23520 | 0.80155 | 8.54E-49 | -1.69E-46 |
MS.gene055513 | MS.gene23520 | 0.823061 | 1.70E-53 | -1.69E-46 |
MS.gene055589 | MS.gene23520 | 0.821544 | 3.82E-53 | -1.69E-46 |
MS.gene055778 | MS.gene23520 | 0.815021 | 1.14E-51 | -1.69E-46 |
MS.gene055818 | MS.gene23520 | 0.842552 | 2.41E-58 | -1.69E-46 |
MS.gene055841 | MS.gene23520 | 0.82871 | 7.73E-55 | -1.69E-46 |
MS.gene056050 | MS.gene23520 | 0.831359 | 1.75E-55 | -1.69E-46 |
MS.gene056162 | MS.gene23520 | 0.808433 | 3.11E-50 | -1.69E-46 |
MS.gene056174 | MS.gene23520 | 0.805778 | 1.13E-49 | -1.69E-46 |
MS.gene056215 | MS.gene23520 | 0.806532 | 7.86E-50 | -1.69E-46 |
MS.gene056366 | MS.gene23520 | 0.836432 | 9.39E-57 | -1.69E-46 |
MS.gene056595 | MS.gene23520 | 0.840878 | 6.67E-58 | -1.69E-46 |
MS.gene056776 | MS.gene23520 | 0.828577 | 8.32E-55 | -1.69E-46 |
MS.gene056779 | MS.gene23520 | 0.805083 | 1.58E-49 | -1.69E-46 |
MS.gene05689 | MS.gene23520 | 0.805632 | 1.22E-49 | -1.69E-46 |
MS.gene05690 | MS.gene23520 | 0.802288 | 6.02E-49 | -1.69E-46 |
MS.gene057034 | MS.gene23520 | 0.814561 | 1.45E-51 | -1.69E-46 |
MS.gene057102 | MS.gene23520 | 0.801233 | 9.92E-49 | -1.69E-46 |
MS.gene057208 | MS.gene23520 | 0.818004 | 2.46E-52 | -1.69E-46 |
MS.gene057314 | MS.gene23520 | 0.809702 | 1.66E-50 | -1.69E-46 |
MS.gene057444 | MS.gene23520 | 0.813661 | 2.29E-51 | -1.69E-46 |
MS.gene057598 | MS.gene23520 | 0.825672 | 4.13E-54 | -1.69E-46 |
MS.gene058009 | MS.gene23520 | 0.805885 | 1.08E-49 | -1.69E-46 |
MS.gene058010 | MS.gene23520 | 0.807564 | 4.75E-50 | -1.69E-46 |
MS.gene058037 | MS.gene23520 | 0.815389 | 9.48E-52 | -1.69E-46 |
MS.gene058625 | MS.gene23520 | 0.833287 | 5.81E-56 | -1.69E-46 |
MS.gene058783 | MS.gene23520 | 0.810792 | 9.67E-51 | -1.69E-46 |
MS.gene058829 | MS.gene23520 | 0.807318 | 5.36E-50 | -1.69E-46 |
MS.gene058979 | MS.gene23520 | 0.819493 | 1.13E-52 | -1.69E-46 |
MS.gene05954 | MS.gene23520 | 0.82396 | 1.05E-53 | -1.69E-46 |
MS.gene059570 | MS.gene23520 | 0.827765 | 1.31E-54 | -1.69E-46 |
MS.gene059625 | MS.gene23520 | 0.836672 | 8.16E-57 | -1.69E-46 |
MS.gene059842 | MS.gene23520 | 0.80992 | 1.49E-50 | -1.69E-46 |
MS.gene059935 | MS.gene23520 | 0.817136 | 3.86E-52 | -1.69E-46 |
MS.gene060365 | MS.gene23520 | 0.801738 | 7.81E-49 | -1.69E-46 |
MS.gene060429 | MS.gene23520 | 0.818206 | 2.21E-52 | -1.69E-46 |
MS.gene060521 | MS.gene23520 | 0.817116 | 3.90E-52 | -1.69E-46 |
MS.gene060572 | MS.gene23520 | 0.845994 | 2.87E-59 | -1.69E-46 |
MS.gene060777 | MS.gene23520 | 0.813157 | 2.95E-51 | -1.69E-46 |
MS.gene060935 | MS.gene23520 | 0.812297 | 4.55E-51 | -1.69E-46 |
MS.gene060937 | MS.gene23520 | 0.804634 | 1.97E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23520.t1 | MTR_7g094660 | 85.012 | 814 | 116 | 3 | 1 | 813 | 57 | 865 | 0.0 | 1353 |
MS.gene23520.t1 | MTR_7g096260 | 90.934 | 728 | 61 | 1 | 86 | 813 | 1 | 723 | 0.0 | 1259 |
MS.gene23520.t1 | MTR_7g096260 | 90.756 | 714 | 61 | 1 | 100 | 813 | 1 | 709 | 0.0 | 1229 |
MS.gene23520.t1 | MTR_7g094670 | 75.559 | 626 | 144 | 4 | 41 | 666 | 663 | 1279 | 0.0 | 841 |
MS.gene23520.t1 | MTR_7g094670 | 72.530 | 506 | 79 | 5 | 296 | 800 | 1227 | 1673 | 0.0 | 691 |
MS.gene23520.t1 | MTR_2g018390 | 57.505 | 513 | 109 | 4 | 42 | 534 | 17 | 440 | 1.95e-162 | 480 |
MS.gene23520.t1 | MTR_1g097440 | 32.461 | 191 | 111 | 8 | 592 | 776 | 120 | 298 | 1.79e-12 | 71.2 |
MS.gene23520.t1 | MTR_1g061870 | 31.088 | 193 | 111 | 7 | 581 | 766 | 94 | 271 | 1.99e-12 | 70.9 |
MS.gene23520.t1 | MTR_7g102730 | 23.267 | 404 | 231 | 16 | 384 | 768 | 28 | 371 | 5.80e-12 | 69.7 |
MS.gene23520.t1 | MTR_8g092550 | 27.632 | 228 | 112 | 10 | 583 | 791 | 196 | 389 | 8.50e-12 | 68.9 |
MS.gene23520.t1 | MTR_3g099590 | 30.435 | 184 | 118 | 5 | 592 | 772 | 91 | 267 | 1.07e-11 | 67.0 |
MS.gene23520.t1 | MTR_4g117350 | 37.755 | 98 | 50 | 1 | 278 | 375 | 72 | 158 | 1.37e-11 | 63.9 |
MS.gene23520.t1 | MTR_5g071540 | 36.264 | 91 | 58 | 0 | 278 | 368 | 40 | 130 | 1.46e-11 | 63.5 |
MS.gene23520.t1 | MTR_3g102040 | 28.488 | 172 | 110 | 5 | 584 | 754 | 18 | 177 | 2.62e-11 | 67.8 |
MS.gene23520.t1 | MTR_3g029580 | 39.726 | 73 | 44 | 0 | 278 | 350 | 33 | 105 | 2.69e-11 | 62.4 |
MS.gene23520.t1 | MTR_6g040190 | 33.014 | 209 | 121 | 10 | 592 | 795 | 115 | 309 | 6.26e-11 | 66.2 |
MS.gene23520.t1 | MTR_4g085540 | 28.571 | 210 | 129 | 6 | 585 | 783 | 208 | 407 | 6.31e-11 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene23520.t1 | AT4G19610 | 51.458 | 789 | 341 | 12 | 6 | 783 | 39 | 796 | 0.0 | 728 |
MS.gene23520.t1 | AT5G08695 | 43.096 | 717 | 307 | 19 | 6 | 717 | 41 | 661 | 5.15e-160 | 482 |
MS.gene23520.t1 | AT5G05720 | 29.128 | 539 | 275 | 19 | 279 | 802 | 4 | 450 | 5.40e-36 | 142 |
MS.gene23520.t1 | AT1G71770 | 25.000 | 408 | 250 | 15 | 279 | 676 | 61 | 422 | 1.52e-14 | 78.2 |
MS.gene23520.t1 | AT1G71770 | 30.256 | 195 | 124 | 8 | 576 | 766 | 130 | 316 | 3.99e-11 | 67.0 |
MS.gene23520.t1 | AT1G71770 | 25.000 | 408 | 250 | 15 | 279 | 676 | 61 | 422 | 1.52e-14 | 78.2 |
MS.gene23520.t1 | AT1G71770 | 30.256 | 195 | 124 | 8 | 576 | 766 | 130 | 316 | 3.99e-11 | 67.0 |
MS.gene23520.t1 | AT4G20030 | 38.776 | 98 | 52 | 2 | 278 | 367 | 41 | 138 | 7.12e-14 | 70.5 |
MS.gene23520.t1 | AT4G34110 | 29.717 | 212 | 110 | 8 | 592 | 783 | 217 | 409 | 7.46e-14 | 75.9 |
MS.gene23520.t1 | AT4G34110 | 23.371 | 445 | 280 | 18 | 279 | 714 | 38 | 430 | 2.70e-12 | 70.9 |
MS.gene23520.t1 | AT4G34110 | 27.907 | 172 | 111 | 5 | 591 | 761 | 37 | 196 | 1.24e-11 | 68.6 |
MS.gene23520.t1 | AT2G36660 | 22.829 | 403 | 232 | 15 | 384 | 768 | 42 | 383 | 3.54e-13 | 73.6 |
MS.gene23520.t1 | AT2G36660 | 30.233 | 129 | 84 | 2 | 268 | 396 | 295 | 417 | 6.78e-11 | 66.2 |
MS.gene23520.t1 | AT1G49760 | 27.907 | 172 | 111 | 5 | 591 | 761 | 46 | 205 | 2.44e-12 | 71.2 |
MS.gene23520.t1 | AT1G49760 | 27.755 | 245 | 138 | 10 | 558 | 783 | 194 | 418 | 1.10e-11 | 68.9 |
MS.gene23520.t1 | AT1G49760 | 27.907 | 172 | 111 | 5 | 591 | 761 | 46 | 205 | 2.44e-12 | 71.2 |
MS.gene23520.t1 | AT1G49760 | 27.755 | 245 | 138 | 10 | 558 | 783 | 194 | 418 | 1.10e-11 | 68.9 |
MS.gene23520.t1 | AT3G16380 | 28.324 | 173 | 115 | 4 | 591 | 763 | 22 | 185 | 2.87e-12 | 70.5 |
MS.gene23520.t1 | AT3G16380 | 29.412 | 221 | 126 | 8 | 592 | 801 | 114 | 315 | 6.49e-12 | 69.3 |
MS.gene23520.t1 | AT1G34140 | 32.584 | 178 | 100 | 9 | 576 | 749 | 15 | 176 | 2.28e-11 | 67.0 |
MS.gene23520.t1 | AT2G23350 | 27.982 | 218 | 120 | 7 | 585 | 783 | 220 | 419 | 7.08e-11 | 66.2 |
Find 135 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCACGTTTCTTATCGGATTT+AGG | 0.149160 | 7.3:+14907641 | None:intergenic |
CATCTGTTGTCTTGAAATTT+AGG | 0.160094 | 7.3:+14899194 | None:intergenic |
TGAAGAAAATCTTGAAGTTT+TGG | 0.190865 | 7.3:+14907827 | None:intergenic |
TGTTACCTGGCTGCAAATTC+TGG | 0.224005 | 7.3:+14906974 | None:intergenic |
GCAGAGATGTTTGGGAAATT+TGG | 0.242090 | 7.3:-14903465 | MS.gene23520:CDS |
GTTTGGGAAATTTGGTAGTT+TGG | 0.255183 | 7.3:-14903457 | MS.gene23520:CDS |
AAGGAAATATGAAATTTAAA+AGG | 0.260205 | 7.3:-14898089 | MS.gene23520:CDS |
TGGGCTCCTTCCGATGTTCT+TGG | 0.260774 | 7.3:-14900379 | MS.gene23520:CDS |
CTTCTTGGGGTTCTTTCAAT+AGG | 0.266349 | 7.3:+14907431 | None:intergenic |
AAGTGTTTGCAACGATTTAC+AGG | 0.273150 | 7.3:-14898944 | MS.gene23520:intron |
ACTCTTGAGCACCACTTCTT+GGG | 0.274073 | 7.3:+14907417 | None:intergenic |
AGAAATTACGTGGTCGAATA+TGG | 0.281071 | 7.3:+14907245 | None:intergenic |
CTTAAGCTCACGTTTCTTAT+CGG | 0.286303 | 7.3:+14907634 | None:intergenic |
GCAGCAACATTATCAGCTTC+TGG | 0.286700 | 7.3:+14903666 | None:intergenic |
GAAACTCCTTTCTTATGTTC+TGG | 0.295455 | 7.3:+14907299 | None:intergenic |
AGGAGCCCACTCCAAGTATA+AGG | 0.309976 | 7.3:+14900393 | None:intergenic |
TTAAGATTACCAATGAAGTT+TGG | 0.311438 | 7.3:-14898480 | MS.gene23520:CDS |
AATGAACTTGCAGAGATGTT+TGG | 0.316310 | 7.3:-14903474 | MS.gene23520:CDS |
CACGTTTCTTATCGGATTTA+GGG | 0.316732 | 7.3:+14907642 | None:intergenic |
AACTCTTGAGCACCACTTCT+TGG | 0.320155 | 7.3:+14907416 | None:intergenic |
TGTTGGTAAAAGTGATTTAC+TGG | 0.332641 | 7.3:-14903691 | MS.gene23520:CDS |
CTATAATTTCCAAACTTCAT+TGG | 0.332925 | 7.3:+14898471 | None:intergenic |
CAACCAAGCAACATTGAATA+AGG | 0.334117 | 7.3:-14907735 | MS.gene23520:CDS |
ATGAACTTGCAGAGATGTTT+GGG | 0.338200 | 7.3:-14903473 | MS.gene23520:CDS |
TTCTTGGGGTTCTTTCAATA+GGG | 0.359760 | 7.3:+14907432 | None:intergenic |
GTTTGCAACTGATGTACTTT+CGG | 0.364220 | 7.3:+14907709 | None:intergenic |
GTCGGACAATTCAATCTTCC+AGG | 0.365242 | 7.3:-14905719 | MS.gene23520:CDS |
TGCTTGGTTGTTAACATCAT+TGG | 0.368860 | 7.3:+14907748 | None:intergenic |
TGATGGAGTAATCTCTGATA+TGG | 0.381279 | 7.3:-14907609 | MS.gene23520:CDS |
AGGACATGAAGACAATTCTA+TGG | 0.383595 | 7.3:-14907861 | MS.gene23520:CDS |
AGACAATTATTTAGCCCGTT+TGG | 0.399385 | 7.3:-14898657 | MS.gene23520:CDS |
TTGAGTATAGTGGACTGTTT+TGG | 0.400671 | 7.3:-14898814 | MS.gene23520:intron |
AATTTAGGTTCTTGACAAAC+AGG | 0.403067 | 7.3:+14899209 | None:intergenic |
GAATTGCTTCCTGAGCTTCC+CGG | 0.403099 | 7.3:+14908216 | None:intergenic |
ATGAATATAAGCTATTCCTT+TGG | 0.407937 | 7.3:+14907006 | None:intergenic |
GAATGTCTTGGTAAATTAGC+TGG | 0.410019 | 7.3:+14905676 | None:intergenic |
GAAGAGCATTTCAGTCAGTT+TGG | 0.410037 | 7.3:-14907076 | MS.gene23520:CDS |
TTAATTATCACCTGGCCAAA+CGG | 0.421522 | 7.3:+14898642 | None:intergenic |
TGGAGTGAACGTGGAGTCTC+TGG | 0.428559 | 7.3:-14903583 | MS.gene23520:CDS |
AAGCAGGTGGCTCGAAAACT+TGG | 0.428560 | 7.3:-14907977 | MS.gene23520:intron |
ACTTGTGAGTCGCTTAAGAT+AGG | 0.434521 | 7.3:+14907683 | None:intergenic |
ATGAAGTTTGGAAATTATAG+AGG | 0.435793 | 7.3:-14898468 | MS.gene23520:CDS |
TGTTGCTGCAAATGTTGCTC+TGG | 0.435965 | 7.3:-14903652 | MS.gene23520:CDS |
CTGTTGCAGTGAGGAGGAAC+TGG | 0.438578 | 7.3:-14907098 | MS.gene23520:intron |
TCTCCTTATTCAATGTTGCT+TGG | 0.450137 | 7.3:+14907732 | None:intergenic |
TCTTCATTGCTTGAATGTCT+TGG | 0.451778 | 7.3:+14905664 | None:intergenic |
ATTATTTAGCCCGTTTGGCC+AGG | 0.451785 | 7.3:-14898652 | MS.gene23520:intron |
TAATTATCACCTGGCCAAAC+GGG | 0.459006 | 7.3:+14898643 | None:intergenic |
AACAATCATGCTAGAGCTAA+AGG | 0.459016 | 7.3:-14907881 | MS.gene23520:CDS |
CTCTCAAGCACCCACTTGTA+TGG | 0.465466 | 7.3:-14898390 | MS.gene23520:CDS |
CTTGCGAACAGTAAAGTTGA+TGG | 0.466716 | 7.3:-14903555 | MS.gene23520:CDS |
GCTCAATTTAATGAACATAG+TGG | 0.467944 | 7.3:-14898165 | MS.gene23520:CDS |
ATTCACTTGAGACTTATCAT+TGG | 0.468768 | 7.3:+14907352 | None:intergenic |
AAAGCAGCTTTAGCTGCTGC+TGG | 0.471945 | 7.3:+14901138 | None:intergenic |
TCGTACTGACCGGGAAGCTC+AGG | 0.475131 | 7.3:-14908225 | MS.gene23520:CDS |
GACAACAGATGAGGGTTTGA+GGG | 0.476637 | 7.3:-14899182 | MS.gene23520:CDS |
TGTGGAGTATGTTACTCAGC+AGG | 0.483709 | 7.3:-14898436 | MS.gene23520:CDS |
CCACTTGTATGGCAGACATC+TGG | 0.484106 | 7.3:-14898379 | MS.gene23520:intron |
ATACTAACTTATCCAAGAAA+AGG | 0.484272 | 7.3:-14898134 | MS.gene23520:CDS |
AGACAACAGATGAGGGTTTG+AGG | 0.485163 | 7.3:-14899183 | MS.gene23520:CDS |
GAATAGTCTGTACATGTGTC+AGG | 0.486410 | 7.3:-14905220 | MS.gene23520:CDS |
TTATTGGATTTCGTACTGAC+CGG | 0.487541 | 7.3:-14908235 | MS.gene23520:CDS |
TTCTTCAGGTCATGCAACCT+CGG | 0.490613 | 7.3:-14907811 | MS.gene23520:CDS |
AACAACGAAGAGAGGAAGAA+AGG | 0.496906 | 7.3:-14905278 | MS.gene23520:CDS |
TGCTCCCTTATACTTGGAGT+GGG | 0.497665 | 7.3:-14900398 | MS.gene23520:CDS |
TCAGTTTGGCAGTGTCTCAC+AGG | 0.497833 | 7.3:-14907062 | MS.gene23520:CDS |
CTCTTGAGCACCACTTCTTG+GGG | 0.499235 | 7.3:+14907418 | None:intergenic |
ATCAGATGTTGATATTGATC+CGG | 0.499899 | 7.3:-14900263 | MS.gene23520:CDS |
TATTGATCCGGACAGAATAG+AGG | 0.504104 | 7.3:-14900251 | MS.gene23520:intron |
CTCTGTCATGTCAAGAATGA+TGG | 0.505194 | 7.3:-14898768 | MS.gene23520:CDS |
TGGTCGAATATGGCAGATTA+CGG | 0.507492 | 7.3:+14907255 | None:intergenic |
TAGGGCTGCTCCCTTATACT+TGG | 0.507845 | 7.3:-14900404 | MS.gene23520:CDS |
GTCTCAAGTGAATGCAATTG+AGG | 0.508138 | 7.3:-14907342 | MS.gene23520:CDS |
TCTTCAGGTCATGCAACCTC+GGG | 0.508661 | 7.3:-14907810 | MS.gene23520:CDS |
GGTTCATTTGCTTGTTCATG+AGG | 0.514266 | 7.3:-14907041 | MS.gene23520:CDS |
GGTCAAACCTCTATTCTGTC+CGG | 0.514475 | 7.3:+14900244 | None:intergenic |
AGGAAAGCAGCTGAAGCTAA+AGG | 0.515410 | 7.3:-14905258 | MS.gene23520:CDS |
GAATAATGGAATTGCTGAAA+AGG | 0.515716 | 7.3:-14900326 | MS.gene23520:CDS |
CAGTTCCAGAATTTGCAGCC+AGG | 0.515828 | 7.3:-14906979 | MS.gene23520:intron |
GAAGACCAAGAAAATACTGT+TGG | 0.520732 | 7.3:-14907386 | MS.gene23520:CDS |
TTTCAGTAAACACATGAAAG+AGG | 0.521106 | 7.3:-14899155 | MS.gene23520:CDS |
AGTGAATGCAATTGAGGAAG+AGG | 0.522200 | 7.3:-14907336 | MS.gene23520:CDS |
GGAGCCCACTCCAAGTATAA+GGG | 0.529811 | 7.3:+14900394 | None:intergenic |
CCAAGAAAATACTGTTGGAA+AGG | 0.530760 | 7.3:-14907381 | MS.gene23520:CDS |
CTGCTCCCTTATACTTGGAG+TGG | 0.533683 | 7.3:-14900399 | MS.gene23520:CDS |
TCAAATCCAGAACATAAGAA+AGG | 0.535333 | 7.3:-14907305 | MS.gene23520:CDS |
AAACGTGAGCTTAAGCATGA+TGG | 0.535732 | 7.3:-14907626 | MS.gene23520:CDS |
GAATGTCGACTCCGCGGACG+AGG | 0.536953 | 7.3:+14907941 | None:intergenic |
TGGCGATGACAACAGTGATT+CGG | 0.537975 | 7.3:-14907525 | MS.gene23520:CDS |
GCCATCAGTATGTTAGATGA+AGG | 0.538296 | 7.3:-14898108 | MS.gene23520:CDS |
GTACAGACTATTCCATGCTC+TGG | 0.538915 | 7.3:+14905230 | None:intergenic |
GTGATTGAGAGAGCAAAAGA+AGG | 0.540455 | 7.3:-14898222 | MS.gene23520:CDS |
GTGAGTCGCTTAAGATAGGA+TGG | 0.549371 | 7.3:+14907687 | None:intergenic |
TAACATGCAATAATCTCCCC+TGG | 0.551097 | 7.3:+14905701 | None:intergenic |
TCCTTCATCTAACATACTGA+TGG | 0.552737 | 7.3:+14898107 | None:intergenic |
GTGAATGCAATTGAGGAAGA+GGG | 0.558261 | 7.3:-14907335 | MS.gene23520:CDS |
CTCGGGCAATGTCTAAGCTG+TGG | 0.560677 | 7.3:-14907793 | MS.gene23520:CDS |
AGTGATATTAGAGAAAGATG+TGG | 0.567788 | 7.3:-14900293 | MS.gene23520:CDS |
GTTATTCTGTTGCAGTGAGG+AGG | 0.574934 | 7.3:-14907104 | MS.gene23520:intron |
AAATTTGCCATATCAGGCTA+CGG | 0.580090 | 7.3:-14903499 | MS.gene23520:CDS |
TCGGGCAATGTCTAAGCTGT+GGG | 0.586421 | 7.3:-14907792 | MS.gene23520:CDS |
TCGGACAATTCAATCTTCCA+GGG | 0.587035 | 7.3:-14905718 | MS.gene23520:CDS |
CCAGATGTCTGCCATACAAG+TGG | 0.588396 | 7.3:+14898379 | None:intergenic |
AATTTCAAGACAACAGATGA+GGG | 0.589469 | 7.3:-14899190 | MS.gene23520:CDS |
ATTGAAAGAACCCCAAGAAG+TGG | 0.590316 | 7.3:-14907428 | MS.gene23520:CDS |
TATCAGGGCGCTAGAAGAGT+CGG | 0.596073 | 7.3:-14905737 | MS.gene23520:intron |
AAATCTCAAACAACGAAGAG+AGG | 0.600079 | 7.3:-14905286 | MS.gene23520:CDS |
TTCAGTAAACACATGAAAGA+GGG | 0.602870 | 7.3:-14899154 | MS.gene23520:CDS |
TTTGGGCCAAGAACATCGGA+AGG | 0.606782 | 7.3:+14900373 | None:intergenic |
ATGCAAATCTTCCTCGTCCG+CGG | 0.607103 | 7.3:-14907952 | MS.gene23520:CDS |
GTTTACATGTTGTAGGAACA+AGG | 0.608786 | 7.3:-14905322 | MS.gene23520:intron |
TAACTTATCCAAGAAAAGGA+AGG | 0.610315 | 7.3:-14898130 | MS.gene23520:CDS |
GAGGATACAAAACGATCCAA+AGG | 0.611415 | 7.3:-14907022 | MS.gene23520:CDS |
AGATAAATGAGAACACTGCT+CGG | 0.613035 | 7.3:-14903722 | MS.gene23520:CDS |
CTAAAGGAGATACCAGAGCA+TGG | 0.614779 | 7.3:-14905242 | MS.gene23520:CDS |
GTTGCTGCAAATGTTGCTCT+GGG | 0.616981 | 7.3:-14903651 | MS.gene23520:CDS |
AAATTTCAAGACAACAGATG+AGG | 0.617949 | 7.3:-14899191 | MS.gene23520:CDS |
TATTGGATTTCGTACTGACC+GGG | 0.618736 | 7.3:-14908234 | MS.gene23520:CDS |
ACTGCTCGGAAATATTGTGT+TGG | 0.623002 | 7.3:-14903708 | MS.gene23520:CDS |
TTTGTTGAATGTCGACTCCG+CGG | 0.626294 | 7.3:+14907935 | None:intergenic |
TTTCAAGAGCAAATTGACAA+CGG | 0.632803 | 7.3:-14907582 | MS.gene23520:CDS |
CAGATGTCTGCCATACAAGT+GGG | 0.638287 | 7.3:+14898380 | None:intergenic |
ATTTAGGTTCTTGACAAACA+GGG | 0.641727 | 7.3:+14899210 | None:intergenic |
TGAATGCAATTGAGGAAGAG+GGG | 0.656118 | 7.3:-14907334 | MS.gene23520:CDS |
GTAAACACATGAAAGAGGGA+CGG | 0.658062 | 7.3:-14899150 | MS.gene23520:CDS |
GTTGGTAAAAGTGATTTACT+GGG | 0.669808 | 7.3:-14903690 | MS.gene23520:CDS |
AGCATGATTGTTAACATGTG+AGG | 0.670588 | 7.3:+14907892 | None:intergenic |
CACAGCTTAGACATTGCCCG+AGG | 0.675080 | 7.3:+14907794 | None:intergenic |
GGAGTATGTTACTCAGCAGG+AGG | 0.710455 | 7.3:-14898433 | MS.gene23520:CDS |
TTACGGACAAACAGTCGACA+CGG | 0.713491 | 7.3:+14907272 | None:intergenic |
CGGACAATTCAATCTTCCAG+GGG | 0.713830 | 7.3:-14905717 | MS.gene23520:CDS |
ACTGAACATGAAGAAAATCG+TGG | 0.715114 | 7.3:-14907461 | MS.gene23520:CDS |
TGTTGTAGGAACAAGGACCA+AGG | 0.722992 | 7.3:-14905315 | MS.gene23520:intron |
GAAAGCAGTGATGATGACAA+TGG | 0.725829 | 7.3:-14907545 | MS.gene23520:CDS |
AGAGCAAATTGACAACGGAG+TGG | 0.732742 | 7.3:-14907577 | MS.gene23520:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 14898080 | 14908482 | 14898080 | ID=MS.gene23520 |
chr7.3 | mRNA | 14898080 | 14908482 | 14898080 | ID=MS.gene23520.t1;Parent=MS.gene23520 |
chr7.3 | exon | 14908472 | 14908482 | 14908472 | ID=MS.gene23520.t1.exon1;Parent=MS.gene23520.t1 |
chr7.3 | CDS | 14908472 | 14908482 | 14908472 | ID=cds.MS.gene23520.t1;Parent=MS.gene23520.t1 |
chr7.3 | exon | 14908169 | 14908283 | 14908169 | ID=MS.gene23520.t1.exon2;Parent=MS.gene23520.t1 |
chr7.3 | CDS | 14908169 | 14908283 | 14908169 | ID=cds.MS.gene23520.t1;Parent=MS.gene23520.t1 |
chr7.3 | exon | 14907254 | 14907993 | 14907254 | ID=MS.gene23520.t1.exon3;Parent=MS.gene23520.t1 |
chr7.3 | CDS | 14907254 | 14907993 | 14907254 | ID=cds.MS.gene23520.t1;Parent=MS.gene23520.t1 |
chr7.3 | exon | 14906980 | 14907111 | 14906980 | ID=MS.gene23520.t1.exon4;Parent=MS.gene23520.t1 |
chr7.3 | CDS | 14906980 | 14907111 | 14906980 | ID=cds.MS.gene23520.t1;Parent=MS.gene23520.t1 |
chr7.3 | exon | 14905664 | 14905753 | 14905664 | ID=MS.gene23520.t1.exon5;Parent=MS.gene23520.t1 |
chr7.3 | CDS | 14905664 | 14905753 | 14905664 | ID=cds.MS.gene23520.t1;Parent=MS.gene23520.t1 |
chr7.3 | exon | 14905215 | 14905329 | 14905215 | ID=MS.gene23520.t1.exon6;Parent=MS.gene23520.t1 |
chr7.3 | CDS | 14905215 | 14905329 | 14905215 | ID=cds.MS.gene23520.t1;Parent=MS.gene23520.t1 |
chr7.3 | exon | 14903419 | 14903742 | 14903419 | ID=MS.gene23520.t1.exon7;Parent=MS.gene23520.t1 |
chr7.3 | CDS | 14903419 | 14903742 | 14903419 | ID=cds.MS.gene23520.t1;Parent=MS.gene23520.t1 |
chr7.3 | exon | 14901111 | 14901175 | 14901111 | ID=MS.gene23520.t1.exon8;Parent=MS.gene23520.t1 |
chr7.3 | CDS | 14901111 | 14901175 | 14901111 | ID=cds.MS.gene23520.t1;Parent=MS.gene23520.t1 |
chr7.3 | exon | 14900252 | 14900423 | 14900252 | ID=MS.gene23520.t1.exon9;Parent=MS.gene23520.t1 |
chr7.3 | CDS | 14900252 | 14900423 | 14900252 | ID=cds.MS.gene23520.t1;Parent=MS.gene23520.t1 |
chr7.3 | exon | 14899135 | 14899239 | 14899135 | ID=MS.gene23520.t1.exon10;Parent=MS.gene23520.t1 |
chr7.3 | CDS | 14899135 | 14899239 | 14899135 | ID=cds.MS.gene23520.t1;Parent=MS.gene23520.t1 |
chr7.3 | exon | 14898945 | 14899046 | 14898945 | ID=MS.gene23520.t1.exon11;Parent=MS.gene23520.t1 |
chr7.3 | CDS | 14898945 | 14899046 | 14898945 | ID=cds.MS.gene23520.t1;Parent=MS.gene23520.t1 |
chr7.3 | exon | 14898653 | 14898826 | 14898653 | ID=MS.gene23520.t1.exon12;Parent=MS.gene23520.t1 |
chr7.3 | CDS | 14898653 | 14898826 | 14898653 | ID=cds.MS.gene23520.t1;Parent=MS.gene23520.t1 |
chr7.3 | exon | 14898380 | 14898511 | 14898380 | ID=MS.gene23520.t1.exon13;Parent=MS.gene23520.t1 |
chr7.3 | CDS | 14898380 | 14898511 | 14898380 | ID=cds.MS.gene23520.t1;Parent=MS.gene23520.t1 |
chr7.3 | exon | 14898080 | 14898244 | 14898080 | ID=MS.gene23520.t1.exon14;Parent=MS.gene23520.t1 |
chr7.3 | CDS | 14898080 | 14898244 | 14898080 | ID=cds.MS.gene23520.t1;Parent=MS.gene23520.t1 |
Gene Sequence |
Protein sequence |