Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37321.t1 | XP_003626244.1 | 97.2 | 319 | 9 | 0 | 1 | 319 | 1 | 319 | 2.00E-184 | 654.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37321.t1 | I6YGS0 | 34.2 | 319 | 192 | 6 | 7 | 316 | 7 | 316 | 1.0e-51 | 205.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37321.t1 | A2Q321 | 97.2 | 319 | 9 | 0 | 1 | 319 | 1 | 319 | 1.5e-184 | 654.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049794 | MS.gene37321 | -0.804868 | 1.76E-49 | -1.69E-46 |
MS.gene050354 | MS.gene37321 | 0.808452 | 3.08E-50 | -1.69E-46 |
MS.gene050926 | MS.gene37321 | 0.98327 | 2.75E-157 | -1.69E-46 |
MS.gene051694 | MS.gene37321 | -0.802345 | 5.86E-49 | -1.69E-46 |
MS.gene054435 | MS.gene37321 | 0.988651 | 7.34E-175 | -1.69E-46 |
MS.gene054437 | MS.gene37321 | 0.96755 | 1.97E-127 | -1.69E-46 |
MS.gene054447 | MS.gene37321 | 0.969936 | 7.34E-131 | -1.69E-46 |
MS.gene056408 | MS.gene37321 | 0.800884 | 1.17E-48 | -1.69E-46 |
MS.gene057956 | MS.gene37321 | 0.800143 | 1.65E-48 | -1.69E-46 |
MS.gene05883 | MS.gene37321 | -0.813429 | 2.57E-51 | -1.69E-46 |
MS.gene060482 | MS.gene37321 | -0.806564 | 7.74E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene37321 | MS.gene035371 | PPI |
MS.gene071502 | MS.gene37321 | PPI |
MS.gene066360 | MS.gene37321 | PPI |
MS.gene77823 | MS.gene37321 | PPI |
MS.gene37321 | MS.gene066361 | PPI |
MS.gene071504 | MS.gene37321 | PPI |
MS.gene012063 | MS.gene37321 | PPI |
MS.gene37321 | MS.gene071500 | PPI |
MS.gene89620 | MS.gene37321 | PPI |
MS.gene37321 | MS.gene041604 | PPI |
MS.gene035369 | MS.gene37321 | PPI |
MS.gene37321 | MS.gene22955 | PPI |
MS.gene76453 | MS.gene37321 | PPI |
MS.gene025707 | MS.gene37321 | PPI |
MS.gene035373 | MS.gene37321 | PPI |
MS.gene37321 | MS.gene07001 | PPI |
MS.gene035367 | MS.gene37321 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37321.t1 | MTR_7g113030 | 97.179 | 319 | 9 | 0 | 1 | 319 | 1 | 319 | 0.0 | 649 |
MS.gene37321.t1 | MTR_7g113050 | 94.357 | 319 | 18 | 0 | 1 | 319 | 1 | 319 | 0.0 | 633 |
MS.gene37321.t1 | MTR_7g112615 | 91.850 | 319 | 26 | 0 | 1 | 319 | 1 | 319 | 0.0 | 616 |
MS.gene37321.t1 | MTR_7g112620 | 86.834 | 319 | 42 | 0 | 1 | 319 | 1 | 319 | 0.0 | 589 |
MS.gene37321.t1 | MTR_7g113020 | 86.207 | 319 | 44 | 0 | 1 | 319 | 1 | 319 | 0.0 | 587 |
MS.gene37321.t1 | MTR_7g112960 | 75.862 | 319 | 77 | 0 | 1 | 319 | 1 | 319 | 0.0 | 520 |
MS.gene37321.t1 | MTR_7g112963 | 76.176 | 319 | 76 | 0 | 1 | 319 | 1 | 319 | 0.0 | 513 |
MS.gene37321.t1 | MTR_7g112970 | 75.549 | 319 | 75 | 1 | 1 | 319 | 1 | 316 | 0.0 | 511 |
MS.gene37321.t1 | MTR_4g005160 | 73.684 | 323 | 80 | 3 | 1 | 319 | 1 | 322 | 0.0 | 508 |
MS.gene37321.t1 | MTR_7g113050 | 93.249 | 237 | 16 | 0 | 1 | 237 | 1 | 237 | 3.23e-169 | 469 |
MS.gene37321.t1 | MTR_7g112615 | 91.561 | 237 | 20 | 0 | 1 | 237 | 1 | 237 | 4.68e-166 | 461 |
MS.gene37321.t1 | MTR_7g113010 | 72.242 | 281 | 78 | 0 | 1 | 281 | 1 | 281 | 7.64e-153 | 441 |
MS.gene37321.t1 | MTR_4g120240 | 61.059 | 321 | 121 | 3 | 1 | 319 | 37 | 355 | 7.11e-145 | 412 |
MS.gene37321.t1 | MTR_7g108825 | 60.815 | 319 | 123 | 2 | 1 | 319 | 1 | 317 | 8.07e-141 | 400 |
MS.gene37321.t1 | MTR_8g076680 | 48.297 | 323 | 155 | 4 | 1 | 319 | 3 | 317 | 2.37e-106 | 313 |
MS.gene37321.t1 | MTR_7g112615 | 90.566 | 159 | 15 | 0 | 1 | 159 | 1 | 159 | 3.48e-106 | 307 |
MS.gene37321.t1 | MTR_7g108825 | 59.494 | 237 | 94 | 2 | 1 | 237 | 1 | 235 | 5.34e-98 | 289 |
MS.gene37321.t1 | MTR_7g112910 | 58.635 | 249 | 48 | 5 | 72 | 319 | 1 | 195 | 1.93e-90 | 268 |
MS.gene37321.t1 | MTR_1g083480 | 78.616 | 159 | 30 | 2 | 1 | 156 | 1 | 158 | 5.74e-90 | 266 |
MS.gene37321.t1 | MTR_8g076680 | 49.378 | 241 | 112 | 3 | 1 | 237 | 3 | 237 | 3.57e-81 | 246 |
MS.gene37321.t1 | MTR_2g090240 | 36.760 | 321 | 189 | 6 | 1 | 318 | 1 | 310 | 1.06e-66 | 212 |
MS.gene37321.t1 | MTR_4g089060 | 36.760 | 321 | 188 | 6 | 1 | 318 | 1 | 309 | 2.03e-65 | 208 |
MS.gene37321.t1 | MTR_3g024250 | 86.916 | 107 | 14 | 0 | 46 | 152 | 1 | 107 | 3.39e-65 | 202 |
MS.gene37321.t1 | MTR_2g090245 | 35.826 | 321 | 192 | 7 | 1 | 318 | 1 | 310 | 6.64e-63 | 202 |
MS.gene37321.t1 | MTR_4g089040 | 36.137 | 321 | 190 | 6 | 1 | 318 | 1 | 309 | 6.76e-63 | 202 |
MS.gene37321.t1 | MTR_4g089060 | 34.195 | 348 | 187 | 7 | 1 | 318 | 1 | 336 | 2.77e-60 | 196 |
MS.gene37321.t1 | MTR_4g089060 | 39.056 | 233 | 133 | 3 | 1 | 231 | 1 | 226 | 8.41e-54 | 176 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene37321.t1 | AT3G05600 | 60.185 | 324 | 124 | 4 | 1 | 319 | 1 | 324 | 2.43e-147 | 417 |
MS.gene37321.t1 | AT4G02340 | 57.188 | 320 | 132 | 3 | 1 | 319 | 1 | 316 | 5.99e-138 | 394 |
MS.gene37321.t1 | AT2G26740 | 61.180 | 322 | 118 | 4 | 4 | 319 | 1 | 321 | 8.06e-130 | 373 |
MS.gene37321.t1 | AT4G15960 | 52.615 | 325 | 147 | 3 | 1 | 319 | 51 | 374 | 1.36e-124 | 362 |
MS.gene37321.t1 | AT2G26750 | 58.567 | 321 | 127 | 4 | 4 | 319 | 1 | 320 | 2.51e-124 | 359 |
MS.gene37321.t1 | AT4G15955 | 50.613 | 326 | 123 | 4 | 5 | 319 | 6 | 304 | 9.91e-110 | 321 |
MS.gene37321.t1 | AT3G05600 | 61.157 | 242 | 89 | 4 | 1 | 237 | 1 | 242 | 6.76e-108 | 314 |
MS.gene37321.t1 | AT3G51000 | 48.428 | 318 | 159 | 5 | 4 | 319 | 5 | 319 | 3.98e-103 | 305 |
MS.gene37321.t1 | AT4G15955 | 60.920 | 174 | 58 | 2 | 5 | 168 | 6 | 179 | 8.75e-72 | 220 |
MS.gene37321.t1 | AT4G15955 | 61.212 | 165 | 54 | 2 | 5 | 159 | 6 | 170 | 1.26e-67 | 209 |
Find 84 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACATAAGCTTTGATTCTTTC+AGG | 0.126719 | 7.2:+4247318 | None:intergenic |
GGCATCAACGGTCCTGATTT+TGG | 0.162298 | 7.2:+4247263 | None:intergenic |
CCTCTTGTCTTGTTCCTTCA+TGG | 0.187509 | 7.2:-4247588 | MS.gene37321:CDS |
TTATTACATATGTAGATTTC+AGG | 0.264776 | 7.2:-4247217 | MS.gene37321:intron |
AAAATGCATATTGCTGAAAA+AGG | 0.266560 | 7.2:-4247621 | MS.gene37321:CDS |
AACTCTCCCTTGGGAAATAT+TGG | 0.280214 | 7.2:+4245876 | None:intergenic |
ATATTTCCCAAGGGAGAGTT+TGG | 0.305783 | 7.2:-4245873 | MS.gene37321:CDS |
CGCCATGAATACCACAGTTC+GGG | 0.324950 | 7.2:+4247561 | None:intergenic |
CACAGAACAGTGGAAGTAAA+TGG | 0.328559 | 7.2:-4247648 | MS.gene37321:CDS |
ATTTCTTGTGGCTCATGATT+GGG | 0.336317 | 7.2:-4247376 | MS.gene37321:CDS |
AGCTGATGGCACCATGGAAT+GGG | 0.338259 | 7.2:-4245380 | MS.gene37321:CDS |
TATTTCTTGTGGCTCATGAT+TGG | 0.353373 | 7.2:-4247377 | MS.gene37321:CDS |
GTCTCCAAATTTGAGAAAAC+AGG | 0.355343 | 7.2:-4245780 | MS.gene37321:CDS |
GATAATCACTTCTTCCAGAT+TGG | 0.362380 | 7.2:+4245248 | None:intergenic |
CATGATTGGGGTGCCATCAT+TGG | 0.372270 | 7.2:-4247363 | MS.gene37321:CDS |
GATGCCATGCATGCTGCTTA+TGG | 0.379998 | 7.2:-4247246 | MS.gene37321:CDS |
ACCCTCACAACTCGGAAAAC+TGG | 0.389484 | 7.2:-4245903 | MS.gene37321:CDS |
CCCAAGGGAGAGTTTGGAAC+TGG | 0.389949 | 7.2:-4245867 | MS.gene37321:CDS |
AGCCAAGAGGGTAAGGTGTC+AGG | 0.390169 | 7.2:+4245828 | None:intergenic |
ATCACAGGAACCAGGCAAAA+TGG | 0.395142 | 7.2:-4245970 | MS.gene37321:intron |
GCTCCGGATCTCCGTGGTTA+TGG | 0.399328 | 7.2:-4247495 | MS.gene37321:CDS |
TTACTTGTATTGTAGAAATT+GGG | 0.399713 | 7.2:-4245403 | MS.gene37321:intron |
TCCCCGAACTGTGGTATTCA+TGG | 0.400391 | 7.2:-4247563 | MS.gene37321:CDS |
GAAGAAGTGATTATCCAAAA+AGG | 0.403789 | 7.2:-4245240 | MS.gene37321:CDS |
CTCCTGACACCTTACCCTCT+TGG | 0.407073 | 7.2:-4245830 | MS.gene37321:CDS |
CATAAGCTTTGATTCTTTCA+GGG | 0.418162 | 7.2:+4247319 | None:intergenic |
GTGCCTGTGAAATTCATTAC+AGG | 0.432209 | 7.2:-4245345 | MS.gene37321:CDS |
CAAGGAAGATGTGCCCAATC+TGG | 0.434486 | 7.2:-4245262 | MS.gene37321:CDS |
TCCGTAGAAACCCCAAAATC+AGG | 0.443771 | 7.2:-4247275 | MS.gene37321:CDS |
ATAATCACTTCTTCCAGATT+GGG | 0.447163 | 7.2:+4245249 | None:intergenic |
TCCAGTTCCAAACTCTCCCT+TGG | 0.447351 | 7.2:+4245866 | None:intergenic |
CGGCTACCGTGCTGTTGCTC+CGG | 0.456232 | 7.2:-4247511 | MS.gene37321:CDS |
TTCTGTAAGCCAAGAGGGTA+AGG | 0.457253 | 7.2:+4245821 | None:intergenic |
GAAAATCTATAAGTGCAATA+AGG | 0.461083 | 7.2:+4247415 | None:intergenic |
GCGCCATGAATACCACAGTT+CGG | 0.461173 | 7.2:+4247560 | None:intergenic |
GAGCTGATGGCACCATGGAA+TGG | 0.461653 | 7.2:-4245381 | MS.gene37321:CDS |
TCACCATAACCACGGAGATC+CGG | 0.490155 | 7.2:+4247492 | None:intergenic |
CCAGTTCCAAACTCTCCCTT+GGG | 0.501905 | 7.2:+4245867 | None:intergenic |
ACAAAGATACCAACCAATGA+TGG | 0.534758 | 7.2:+4247350 | None:intergenic |
AGGCAAAATGGAAGCTGAGA+TGG | 0.540634 | 7.2:-4245958 | MS.gene37321:CDS |
ATGGAATGGGGTGAAAATCA+AGG | 0.540835 | 7.2:-4245367 | MS.gene37321:CDS |
TTTCTTGTGGCTCATGATTG+GGG | 0.543062 | 7.2:-4247375 | MS.gene37321:CDS |
TCTCCCTTGGGAAATATTGG+AGG | 0.546141 | 7.2:+4245879 | None:intergenic |
TTGGGGTTTCTACGGAGTAG+TGG | 0.547389 | 7.2:+4247282 | None:intergenic |
ATTGTAGCTCTCAGCTCCCT+CGG | 0.548619 | 7.2:-4247531 | MS.gene37321:CDS |
ATCTCCATAAGCAGCATGCA+TGG | 0.554133 | 7.2:+4247242 | None:intergenic |
TCTTCTTCTGTAAGCCAAGA+GGG | 0.563661 | 7.2:+4245816 | None:intergenic |
GAGCAACAGCACGGTAGCCG+AGG | 0.563671 | 7.2:+4247514 | None:intergenic |
TCACCTGTAATGAATTTCAC+AGG | 0.570947 | 7.2:+4245342 | None:intergenic |
AGCAACAGCACGGTAGCCGA+GGG | 0.572130 | 7.2:+4247515 | None:intergenic |
ATTGGGGTGCCATCATTGGT+TGG | 0.574625 | 7.2:-4247359 | MS.gene37321:CDS |
ACAGTTCGGGGAAGCCATGA+AGG | 0.577839 | 7.2:+4247574 | None:intergenic |
GAAGGAGTATATCCATGGTG+GGG | 0.578871 | 7.2:-4245289 | MS.gene37321:CDS |
TGAAGGAGTATATCCATGGT+GGG | 0.583874 | 7.2:-4245290 | MS.gene37321:CDS |
TGGTCCTCCAATATTTCCCA+AGG | 0.588717 | 7.2:-4245883 | MS.gene37321:CDS |
GAAGCTGAGATGGCTGAAGT+TGG | 0.590883 | 7.2:-4245948 | MS.gene37321:CDS |
AGCTGAGAGCTACAATCTGA+TGG | 0.590990 | 7.2:+4247538 | None:intergenic |
AGCAGCATGCATGGCATCAA+CGG | 0.592010 | 7.2:+4247251 | None:intergenic |
TGGTCCGCATCACAGGAACC+AGG | 0.594410 | 7.2:-4245978 | MS.gene37321:intron |
TCTTCAGTTAGTAGCTACAC+AGG | 0.594878 | 7.2:-4247456 | MS.gene37321:CDS |
AAGGAGTATATCCATGGTGG+GGG | 0.600787 | 7.2:-4245288 | MS.gene37321:CDS |
TTCATGGCTTCCCCGAACTG+TGG | 0.605850 | 7.2:-4247572 | MS.gene37321:CDS |
TGTTGATCAAGTATTTCTTG+TGG | 0.608957 | 7.2:-4247388 | MS.gene37321:CDS |
CAACAATCAAGAAGCAGCAG+AGG | 0.610084 | 7.2:-4245205 | MS.gene37321:CDS |
ACTAACTGAAGACGGAGCAT+CGG | 0.615174 | 7.2:+4247467 | None:intergenic |
CCATGAAGGAACAAGACAAG+AGG | 0.618716 | 7.2:+4247588 | None:intergenic |
TTGTAGAAATTGGGAGCTGA+TGG | 0.619295 | 7.2:-4245394 | MS.gene37321:intron |
AACATGAAGGAGTATATCCA+TGG | 0.620148 | 7.2:-4245294 | MS.gene37321:CDS |
ATACTCCTTCATGTTTAGTG+AGG | 0.623538 | 7.2:+4245302 | None:intergenic |
GCTGATGGCACCATGGAATG+GGG | 0.628565 | 7.2:-4245379 | MS.gene37321:CDS |
GTTTGGAACTGGATTCAACT+CGG | 0.629425 | 7.2:-4245856 | MS.gene37321:CDS |
ATTTGGAGACAAAATAAGCA+AGG | 0.634682 | 7.2:+4245793 | None:intergenic |
ATGAAGGAGTATATCCATGG+TGG | 0.640343 | 7.2:-4245291 | MS.gene37321:CDS |
TGAAAAGTACCCTCACAACT+CGG | 0.640586 | 7.2:-4245911 | MS.gene37321:CDS |
ATTGGGAGCTGATGGCACCA+TGG | 0.649732 | 7.2:-4245386 | MS.gene37321:CDS |
GTCTTCTTCTGTAAGCCAAG+AGG | 0.650739 | 7.2:+4245815 | None:intergenic |
GTGTAGCTACTAACTGAAGA+CGG | 0.652352 | 7.2:+4247459 | None:intergenic |
ATACACCTCACTAAACATGA+AGG | 0.662683 | 7.2:-4245307 | MS.gene37321:CDS |
GGAGATCCGGAGCAACAGCA+CGG | 0.668358 | 7.2:+4247505 | None:intergenic |
AGGAATAGAACACAGAACAG+TGG | 0.676997 | 7.2:-4247658 | MS.gene37321:CDS |
GCCATGAATACCACAGTTCG+GGG | 0.692309 | 7.2:+4247562 | None:intergenic |
GGTCCTCCAATATTTCCCAA+GGG | 0.706108 | 7.2:-4245882 | MS.gene37321:CDS |
GCTGTTGCTCCGGATCTCCG+TGG | 0.713696 | 7.2:-4247501 | MS.gene37321:CDS |
CATCGGTGTCACCATAACCA+CGG | 0.714613 | 7.2:+4247484 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAATGTGATTTTATTTTAT+AGG | + | chr7.2:4245786-4245805 | None:intergenic | 10.0% |
!!! | AAATGTGATTTTATTTTATA+GGG | + | chr7.2:4245785-4245804 | None:intergenic | 10.0% |
!! | AATACTTAATAACTAAATTC+AGG | - | chr7.2:4246032-4246051 | MS.gene37321:intron | 15.0% |
!! | ATACTTAATAACTAAATTCA+GGG | - | chr7.2:4246033-4246052 | MS.gene37321:intron | 15.0% |
!! | ATTGTTTAATATAATTAAGG+AGG | - | chr7.2:4246162-4246181 | MS.gene37321:intron | 15.0% |
!! | CAAAATTCTAAATATTTAGA+TGG | + | chr7.2:4245754-4245773 | None:intergenic | 15.0% |
!! | GAGATTGTTTAATATAATTA+AGG | - | chr7.2:4246159-4246178 | MS.gene37321:intron | 15.0% |
!! | TTATGAGTCATAAAATATTA+GGG | + | chr7.2:4245703-4245722 | None:intergenic | 15.0% |
!! | TTTATGAGTCATAAAATATT+AGG | + | chr7.2:4245704-4245723 | None:intergenic | 15.0% |
!!! | ATGTTGATGAAAAATTTTAT+AGG | + | chr7.2:4245815-4245834 | None:intergenic | 15.0% |
!!! | TGTTGATGAAAAATTTTATA+GGG | + | chr7.2:4245814-4245833 | None:intergenic | 15.0% |
!! | AAACTTAATTATATAGATGC+AGG | - | chr7.2:4246002-4246021 | MS.gene37321:intron | 20.0% |
!! | ACAAAACTGTGAATATTTAT+AGG | - | chr7.2:4245973-4245992 | MS.gene37321:intron | 20.0% |
!! | ATTACTTGTATTGTAGAAAT+TGG | - | chr7.2:4247423-4247442 | MS.gene37321:CDS | 20.0% |
!! | ATTGATTATTGAATACGTTA+GGG | - | chr7.2:4246585-4246604 | MS.gene37321:intron | 20.0% |
!! | CAAAACTGTGAATATTTATA+GGG | - | chr7.2:4245974-4245993 | MS.gene37321:intron | 20.0% |
!! | TATGACTCATAAAATATACA+GGG | - | chr7.2:4245711-4245730 | MS.gene37321:intron | 20.0% |
!! | TCTGTTTCAAAACATTATAT+TGG | + | chr7.2:4246761-4246780 | None:intergenic | 20.0% |
!! | TTACTTGTATTGTAGAAATT+GGG | - | chr7.2:4247424-4247443 | MS.gene37321:CDS | 20.0% |
!! | TTATGACTCATAAAATATAC+AGG | - | chr7.2:4245710-4245729 | MS.gene37321:intron | 20.0% |
!! | TTATTACATATGTAGATTTC+AGG | - | chr7.2:4245610-4245629 | MS.gene37321:intron | 20.0% |
!!! | AAAATATCCATCAACATTTT+TGG | - | chr7.2:4245882-4245901 | MS.gene37321:CDS | 20.0% |
!!! | AAAGTGTGATTTTATTTTGT+AGG | - | chr7.2:4245942-4245961 | MS.gene37321:CDS | 20.0% |
!!! | AAGTGTGATTTTATTTTGTA+GGG | - | chr7.2:4245943-4245962 | MS.gene37321:CDS | 20.0% |
!!! | ACCAATAACAGTTTTAAAAA+TGG | + | chr7.2:4247299-4247318 | None:intergenic | 20.0% |
!!! | TATTGATTATTGAATACGTT+AGG | - | chr7.2:4246584-4246603 | MS.gene37321:intron | 20.0% |
!!! | TCCATTTTTAAAACTGTTAT+TGG | - | chr7.2:4247295-4247314 | MS.gene37321:CDS | 20.0% |
!!! | TGTTAAAACATTTTACCAAA+AGG | + | chr7.2:4247172-4247191 | None:intergenic | 20.0% |
!!! | TGTTGATGGAAAATTTTTAT+AGG | + | chr7.2:4245846-4245865 | None:intergenic | 20.0% |
!!! | TTAAAAAAAGCACTTGATTA+AGG | - | chr7.2:4246305-4246324 | MS.gene37321:intron | 20.0% |
!!! | TTAATCAAGTGCTTTTTTTA+AGG | + | chr7.2:4246306-4246325 | None:intergenic | 20.0% |
!!! | TTTGTTTATCTAAAATGAAG+TGG | - | chr7.2:4246785-4246804 | MS.gene37321:intron | 20.0% |
! | AAAATGCATATTGCTGAAAA+AGG | - | chr7.2:4245206-4245225 | MS.gene37321:CDS | 25.0% |
! | AATGCATCTTTCATTAGAAT+TGG | + | chr7.2:4247403-4247422 | None:intergenic | 25.0% |
! | ACAAAGACTAAAAATGTTGA+TGG | + | chr7.2:4245860-4245879 | None:intergenic | 25.0% |
! | AGAATTGTATGACATCATAA+TGG | - | chr7.2:4246642-4246661 | MS.gene37321:intron | 25.0% |
! | ATGATATGTAGCTAAAAGAA+AGG | + | chr7.2:4246695-4246714 | None:intergenic | 25.0% |
! | ATGCATCTTTCATTAGAATT+GGG | + | chr7.2:4247402-4247421 | None:intergenic | 25.0% |
! | ATTTATTTGAGAGGATTTAC+GGG | - | chr7.2:4246132-4246151 | MS.gene37321:intron | 25.0% |
! | GAAAATCTATAAGTGCAATA+AGG | + | chr7.2:4245415-4245434 | None:intergenic | 25.0% |
! | GAATTAACTGATCAACTATA+AGG | + | chr7.2:4246502-4246521 | None:intergenic | 25.0% |
! | GAATTGTCAACATATATTTG+TGG | + | chr7.2:4247150-4247169 | None:intergenic | 25.0% |
! | GATTGCTTAAAGTAAATTAG+GGG | + | chr7.2:4245681-4245700 | None:intergenic | 25.0% |
! | GATTTATTTGAGAGGATTTA+CGG | - | chr7.2:4246131-4246150 | MS.gene37321:intron | 25.0% |
! | GGATTGCTTAAAGTAAATTA+GGG | + | chr7.2:4245682-4245701 | None:intergenic | 25.0% |
! | TACAGGGTTAATTAAGTAAA+TGG | - | chr7.2:4245727-4245746 | MS.gene37321:intron | 25.0% |
! | TCAAATAAATCTATCCAAAC+AGG | + | chr7.2:4246122-4246141 | None:intergenic | 25.0% |
! | TGATTGAATATAACATGTGT+CGG | + | chr7.2:4247273-4247292 | None:intergenic | 25.0% |
! | TTTGGATAGATTTATTTGAG+AGG | - | chr7.2:4246123-4246142 | MS.gene37321:intron | 25.0% |
!! | ACATTTTCCTTAAGCATTTT+AGG | + | chr7.2:4245910-4245929 | None:intergenic | 25.0% |
!! | ATTGCACTTATAGATTTTCT+GGG | - | chr7.2:4245416-4245435 | MS.gene37321:intron | 25.0% |
!! | CATTTTCCTTAAGCATTTTA+GGG | + | chr7.2:4245909-4245928 | None:intergenic | 25.0% |
!! | CTGAATAACATAATTGCTTT+TGG | - | chr7.2:4246829-4246848 | MS.gene37321:intron | 25.0% |
!! | TATATGTTGACAATTCCTTT+TGG | - | chr7.2:4247154-4247173 | MS.gene37321:intron | 25.0% |
!! | TATTGCACTTATAGATTTTC+TGG | - | chr7.2:4245415-4245434 | MS.gene37321:intron | 25.0% |
!!! | TCTTATGATTTTAGTTTGAG+TGG | - | chr7.2:4246061-4246080 | MS.gene37321:intron | 25.0% |
AATCAAGTGTTAAATCCACT+TGG | + | chr7.2:4246439-4246458 | None:intergenic | 30.0% | |
AGTAGAGTCTAAATCAAAAG+AGG | - | chr7.2:4246473-4246492 | MS.gene37321:intron | 30.0% | |
ATAATCACTTCTTCCAGATT+GGG | + | chr7.2:4247581-4247600 | None:intergenic | 30.0% | |
ATCAAGTGTTAAATCCACTT+GGG | + | chr7.2:4246438-4246457 | None:intergenic | 30.0% | |
ATTGCTGAAAAAGGAAAAGA+AGG | - | chr7.2:4245215-4245234 | MS.gene37321:CDS | 30.0% | |
ATTTGGAGACAAAATAAGCA+AGG | + | chr7.2:4247037-4247056 | None:intergenic | 30.0% | |
CAACATGACAATAATCTATG+CGG | - | chr7.2:4247190-4247209 | MS.gene37321:intron | 30.0% | |
GAAGAAGTGATTATCCAAAA+AGG | - | chr7.2:4247587-4247606 | MS.gene37321:CDS | 30.0% | |
GGGATTGCTTAAAGTAAATT+AGG | + | chr7.2:4245683-4245702 | None:intergenic | 30.0% | |
TGTTGATCAAGTATTTCTTG+TGG | - | chr7.2:4245439-4245458 | MS.gene37321:intron | 30.0% | |
! | ACATAAGCTTTGATTCTTTC+AGG | + | chr7.2:4245512-4245531 | None:intergenic | 30.0% |
! | ACATGTTGTGCATTTTGTTA+GGG | - | chr7.2:4246556-4246575 | MS.gene37321:intron | 30.0% |
! | CATAAGCTTTGATTCTTTCA+GGG | + | chr7.2:4245511-4245530 | None:intergenic | 30.0% |
! | TACACAGGTTTTCATATAGT+AGG | - | chr7.2:4245386-4245405 | MS.gene37321:CDS | 30.0% |
ACAAAGATACCAACCAATGA+TGG | + | chr7.2:4245480-4245499 | None:intergenic | 35.0% | |
ACAACGCTAAACACAAACAT+TGG | + | chr7.2:4247343-4247362 | None:intergenic | 35.0% | |
AGTGATTATCCAAAAAGGAG+TGG | - | chr7.2:4247592-4247611 | MS.gene37321:CDS | 35.0% | |
ATACACCTCACTAAACATGA+AGG | - | chr7.2:4247520-4247539 | MS.gene37321:CDS | 35.0% | |
ATACTCCTTCATGTTTAGTG+AGG | + | chr7.2:4247528-4247547 | None:intergenic | 35.0% | |
ATGCTTAAGGAAAATGTCAC+AGG | - | chr7.2:4245913-4245932 | MS.gene37321:CDS | 35.0% | |
ATTTCTTGTGGCTCATGATT+GGG | - | chr7.2:4245451-4245470 | MS.gene37321:intron | 35.0% | |
CAGAGACAAAAGTAGAAAAG+TGG | + | chr7.2:4245655-4245674 | None:intergenic | 35.0% | |
GATAATCACTTCTTCCAGAT+TGG | + | chr7.2:4247582-4247601 | None:intergenic | 35.0% | |
GTCTCCAAATTTGAGAAAAC+AGG | - | chr7.2:4247047-4247066 | MS.gene37321:intron | 35.0% | |
TATCAACACGTATCAAACAC+CGG | + | chr7.2:4247243-4247262 | None:intergenic | 35.0% | |
TATTTCTTGTGGCTCATGAT+TGG | - | chr7.2:4245450-4245469 | MS.gene37321:intron | 35.0% | |
TCACCTGTAATGAATTTCAC+AGG | + | chr7.2:4247488-4247507 | None:intergenic | 35.0% | |
TCTGAGTAGGGTAATACTTT+AGG | + | chr7.2:4246719-4246738 | None:intergenic | 35.0% | |
TGCTTAAGGAAAATGTCACA+GGG | - | chr7.2:4245914-4245933 | MS.gene37321:CDS | 35.0% | |
TTAGGGACCAAAAATGTTGA+TGG | + | chr7.2:4245892-4245911 | None:intergenic | 35.0% | |
TTTGGTCCCTAAAATGCTTA+AGG | - | chr7.2:4245900-4245919 | MS.gene37321:CDS | 35.0% | |
! | AACATGAAGGAGTATATCCA+TGG | - | chr7.2:4247533-4247552 | MS.gene37321:CDS | 35.0% |
! | AATATAACATGTGTCGGTGT+CGG | + | chr7.2:4247267-4247286 | None:intergenic | 35.0% |
! | GAAGCCTGTTTTCTCAAATT+TGG | + | chr7.2:4247054-4247073 | None:intergenic | 35.0% |
! | GACATGTTGTGCATTTTGTT+AGG | - | chr7.2:4246555-4246574 | MS.gene37321:intron | 35.0% |
! | TATTTTCCCTGTGCCAATTT+CGG | + | chr7.2:4246360-4246379 | None:intergenic | 35.0% |
!! | AGGGTGAAGTTCTCTTATTT+TGG | - | chr7.2:4246604-4246623 | MS.gene37321:intron | 35.0% |
!!! | GGGTGAAGTTCTCTTATTTT+GGG | - | chr7.2:4246605-4246624 | MS.gene37321:intron | 35.0% |
AACTCTCCCTTGGGAAATAT+TGG | + | chr7.2:4246954-4246973 | None:intergenic | 40.0% | |
AGGAATAGAACACAGAACAG+TGG | - | chr7.2:4245169-4245188 | MS.gene37321:CDS | 40.0% | |
AGTATCTCTCTTAAGGTGAC+AGG | + | chr7.2:4246386-4246405 | None:intergenic | 40.0% | |
AGTGTTAAATCCACTTGGGA+TGG | + | chr7.2:4246434-4246453 | None:intergenic | 40.0% | |
AGTTTGAGTGGTGTTTGATG+TGG | - | chr7.2:4246073-4246092 | MS.gene37321:intron | 40.0% | |
ATATTTCCCAAGGGAGAGTT+TGG | - | chr7.2:4246954-4246973 | MS.gene37321:intron | 40.0% | |
ATCAACACGTATCAAACACC+GGG | + | chr7.2:4247242-4247261 | None:intergenic | 40.0% | |
ATGATACTGATACGCCTGTT+TGG | - | chr7.2:4246105-4246124 | MS.gene37321:intron | 40.0% | |
ATGGAATGGGGTGAAAATCA+AGG | - | chr7.2:4247460-4247479 | MS.gene37321:CDS | 40.0% | |
CACAGAACAGTGGAAGTAAA+TGG | - | chr7.2:4245179-4245198 | MS.gene37321:CDS | 40.0% | |
GTGCCTGTGAAATTCATTAC+AGG | - | chr7.2:4247482-4247501 | MS.gene37321:CDS | 40.0% | |
GTGTAGCTACTAACTGAAGA+CGG | + | chr7.2:4245371-4245390 | None:intergenic | 40.0% | |
GTTTGAGTGGTGTTTGATGT+GGG | - | chr7.2:4246074-4246093 | MS.gene37321:intron | 40.0% | |
TCTTCAGTTAGTAGCTACAC+AGG | - | chr7.2:4245371-4245390 | MS.gene37321:CDS | 40.0% | |
TCTTCTTCTGTAAGCCAAGA+GGG | + | chr7.2:4247014-4247033 | None:intergenic | 40.0% | |
TTGTAGAAATTGGGAGCTGA+TGG | - | chr7.2:4247433-4247452 | MS.gene37321:CDS | 40.0% | |
TTTCTTGTGGCTCATGATTG+GGG | - | chr7.2:4245452-4245471 | MS.gene37321:intron | 40.0% | |
! | AGACTGGAGTATCTCTCTTA+AGG | + | chr7.2:4246393-4246412 | None:intergenic | 40.0% |
! | ATGAAGGAGTATATCCATGG+TGG | - | chr7.2:4247536-4247555 | MS.gene37321:CDS | 40.0% |
! | GTTTGGAACTGGATTCAACT+CGG | - | chr7.2:4246971-4246990 | MS.gene37321:intron | 40.0% |
! | TGAAGGAGTATATCCATGGT+GGG | - | chr7.2:4247537-4247556 | MS.gene37321:CDS | 40.0% |
! | TTGATTTTCACCCCATTCCA+TGG | + | chr7.2:4247461-4247480 | None:intergenic | 40.0% |
!! | TGAAAAGTACCCTCACAACT+CGG | - | chr7.2:4246916-4246935 | MS.gene37321:intron | 40.0% |
!!! | TCCTGATTTTGGGGTTTCTA+CGG | + | chr7.2:4245556-4245575 | None:intergenic | 40.0% |
AAGAGAGATACTCCAGTCTC+AGG | - | chr7.2:4246394-4246413 | MS.gene37321:intron | 45.0% | |
ACGAGCGATTCAATCTGAGT+AGG | + | chr7.2:4246732-4246751 | None:intergenic | 45.0% | |
ACTAACTGAAGACGGAGCAT+CGG | + | chr7.2:4245363-4245382 | None:intergenic | 45.0% | |
AGCTGAGAGCTACAATCTGA+TGG | + | chr7.2:4245292-4245311 | None:intergenic | 45.0% | |
AGGCAAAATGGAAGCTGAGA+TGG | - | chr7.2:4246869-4246888 | MS.gene37321:intron | 45.0% | |
ATCACAGGAACCAGGCAAAA+TGG | - | chr7.2:4246857-4246876 | MS.gene37321:intron | 45.0% | |
ATCTCCATAAGCAGCATGCA+TGG | + | chr7.2:4245588-4245607 | None:intergenic | 45.0% | |
CAACAATCAAGAAGCAGCAG+AGG | - | chr7.2:4247622-4247641 | MS.gene37321:CDS | 45.0% | |
CCATGAAGGAACAAGACAAG+AGG | + | chr7.2:4245242-4245261 | None:intergenic | 45.0% | |
CGAGCGATTCAATCTGAGTA+GGG | + | chr7.2:4246731-4246750 | None:intergenic | 45.0% | |
GGTCCTCCAATATTTCCCAA+GGG | - | chr7.2:4246945-4246964 | MS.gene37321:intron | 45.0% | |
GTCTTCTTCTGTAAGCCAAG+AGG | + | chr7.2:4247015-4247034 | None:intergenic | 45.0% | |
TCCGTAGAAACCCCAAAATC+AGG | - | chr7.2:4245552-4245571 | MS.gene37321:intron | 45.0% | |
TCGATCTATCCCACCGAAAT+TGG | - | chr7.2:4246344-4246363 | MS.gene37321:intron | 45.0% | |
TCTCCCTTGGGAAATATTGG+AGG | + | chr7.2:4246951-4246970 | None:intergenic | 45.0% | |
TGGTCCTCCAATATTTCCCA+AGG | - | chr7.2:4246944-4246963 | MS.gene37321:intron | 45.0% | |
TTCTGTAAGCCAAGAGGGTA+AGG | + | chr7.2:4247009-4247028 | None:intergenic | 45.0% | |
TTTCAGTTTGAAGACGTGCC+CGG | - | chr7.2:4247221-4247240 | MS.gene37321:CDS | 45.0% | |
! | AAGGAGTATATCCATGGTGG+GGG | - | chr7.2:4247539-4247558 | MS.gene37321:CDS | 45.0% |
! | ACCAGTTTTCCGAGTTGTGA+GGG | + | chr7.2:4246928-4246947 | None:intergenic | 45.0% |
! | ATCTCAGCTTCCATTTTGCC+TGG | + | chr7.2:4246870-4246889 | None:intergenic | 45.0% |
! | CATCAACGGTCCTGATTTTG+GGG | + | chr7.2:4245565-4245584 | None:intergenic | 45.0% |
! | CCTCTTGTCTTGTTCCTTCA+TGG | - | chr7.2:4245239-4245258 | MS.gene37321:CDS | 45.0% |
! | GAAGGAGTATATCCATGGTG+GGG | - | chr7.2:4247538-4247557 | MS.gene37321:CDS | 45.0% |
! | GCATCAACGGTCCTGATTTT+GGG | + | chr7.2:4245566-4245585 | None:intergenic | 45.0% |
ACCCTCACAACTCGGAAAAC+TGG | - | chr7.2:4246924-4246943 | MS.gene37321:intron | 50.0% | |
AGCAGCATGCATGGCATCAA+CGG | + | chr7.2:4245579-4245598 | None:intergenic | 50.0% | |
AGCTGATGGCACCATGGAAT+GGG | - | chr7.2:4247447-4247466 | MS.gene37321:CDS | 50.0% | |
ATCCCACCGAAATTGGCACA+GGG | - | chr7.2:4246351-4246370 | MS.gene37321:intron | 50.0% | |
ATTGTAGCTCTCAGCTCCCT+CGG | - | chr7.2:4245296-4245315 | MS.gene37321:CDS | 50.0% | |
CAAGGAAGATGTGCCCAATC+TGG | - | chr7.2:4247565-4247584 | MS.gene37321:CDS | 50.0% | |
CCAGTTCCAAACTCTCCCTT+GGG | + | chr7.2:4246963-4246982 | None:intergenic | 50.0% | |
CGCCATGAATACCACAGTTC+GGG | + | chr7.2:4245269-4245288 | None:intergenic | 50.0% | |
GAAGCTGAGATGGCTGAAGT+TGG | - | chr7.2:4246879-4246898 | MS.gene37321:intron | 50.0% | |
GCCATGAATACCACAGTTCG+GGG | + | chr7.2:4245268-4245287 | None:intergenic | 50.0% | |
GCGCCATGAATACCACAGTT+CGG | + | chr7.2:4245270-4245289 | None:intergenic | 50.0% | |
TAAATCCACTTGGGATGGCC+TGG | + | chr7.2:4246429-4246448 | None:intergenic | 50.0% | |
TATCCCACCGAAATTGGCAC+AGG | - | chr7.2:4246350-4246369 | MS.gene37321:intron | 50.0% | |
TCACCATAACCACGGAGATC+CGG | + | chr7.2:4245338-4245357 | None:intergenic | 50.0% | |
TCCAGTTCCAAACTCTCCCT+TGG | + | chr7.2:4246964-4246983 | None:intergenic | 50.0% | |
TCCCCGAACTGTGGTATTCA+TGG | - | chr7.2:4245264-4245283 | MS.gene37321:CDS | 50.0% | |
TTCCCTGTGCCAATTTCGGT+GGG | + | chr7.2:4246356-4246375 | None:intergenic | 50.0% | |
TTGGGGTTTCTACGGAGTAG+TGG | + | chr7.2:4245548-4245567 | None:intergenic | 50.0% | |
TTTCCCTGTGCCAATTTCGG+TGG | + | chr7.2:4246357-4246376 | None:intergenic | 50.0% | |
TTTGCCTGGTTCCTGTGATG+CGG | + | chr7.2:4246856-4246875 | None:intergenic | 50.0% | |
! | ATTGGGGTGCCATCATTGGT+TGG | - | chr7.2:4245468-4245487 | MS.gene37321:intron | 50.0% |
! | CATGATTGGGGTGCCATCAT+TGG | - | chr7.2:4245464-4245483 | MS.gene37321:intron | 50.0% |
! | GACCAGTTTTCCGAGTTGTG+AGG | + | chr7.2:4246929-4246948 | None:intergenic | 50.0% |
! | GATGCCATGCATGCTGCTTA+TGG | - | chr7.2:4245581-4245600 | MS.gene37321:intron | 50.0% |
! | GGCATCAACGGTCCTGATTT+TGG | + | chr7.2:4245567-4245586 | None:intergenic | 50.0% |
! | TATCCATGGTGGGGGATTCA+AGG | - | chr7.2:4247547-4247566 | MS.gene37321:CDS | 50.0% |
! | TGAAGTGCGCCACTCCTTTT+TGG | + | chr7.2:4247604-4247623 | None:intergenic | 50.0% |
!! | CATCGGTGTCACCATAACCA+CGG | + | chr7.2:4245346-4245365 | None:intergenic | 50.0% |
!! | TTGCTTTTGGTCCGCATCAC+AGG | - | chr7.2:4246842-4246861 | MS.gene37321:intron | 50.0% |
ACAGTTCGGGGAAGCCATGA+AGG | + | chr7.2:4245256-4245275 | None:intergenic | 55.0% | |
ATTGGGAGCTGATGGCACCA+TGG | - | chr7.2:4247441-4247460 | MS.gene37321:CDS | 55.0% | |
CTCCTGACACCTTACCCTCT+TGG | - | chr7.2:4246997-4247016 | MS.gene37321:intron | 55.0% | |
CTTCCTTGAATCCCCCACCA+TGG | + | chr7.2:4247553-4247572 | None:intergenic | 55.0% | |
GAGCTGATGGCACCATGGAA+TGG | - | chr7.2:4247446-4247465 | MS.gene37321:CDS | 55.0% | |
GCTGATGGCACCATGGAATG+GGG | - | chr7.2:4247448-4247467 | MS.gene37321:CDS | 55.0% | |
TTCATGGCTTCCCCGAACTG+TGG | - | chr7.2:4245255-4245274 | MS.gene37321:CDS | 55.0% | |
! | AGCCAAGAGGGTAAGGTGTC+AGG | + | chr7.2:4247002-4247021 | None:intergenic | 55.0% |
! | CCCAAGGGAGAGTTTGGAAC+TGG | - | chr7.2:4246960-4246979 | MS.gene37321:intron | 55.0% |
AGCAACAGCACGGTAGCCGA+GGG | + | chr7.2:4245315-4245334 | None:intergenic | 60.0% | |
AGTCTCAGGACACCACCACC+AGG | - | chr7.2:4246408-4246427 | MS.gene37321:intron | 60.0% | |
ATCCACTTGGGATGGCCTGG+TGG | + | chr7.2:4246426-4246445 | None:intergenic | 60.0% | |
GCTCCGGATCTCCGTGGTTA+TGG | - | chr7.2:4245332-4245351 | MS.gene37321:CDS | 60.0% | |
GGAGATCCGGAGCAACAGCA+CGG | + | chr7.2:4245325-4245344 | None:intergenic | 60.0% | |
TGGTCCGCATCACAGGAACC+AGG | - | chr7.2:4246849-4246868 | MS.gene37321:intron | 60.0% | |
!! | TGGTGGTGGTGTCCTGAGAC+TGG | + | chr7.2:4246409-4246428 | None:intergenic | 60.0% |
CACCACCAGGCCATCCCAAG+TGG | - | chr7.2:4246421-4246440 | MS.gene37321:intron | 65.0% | |
CACTTGGGATGGCCTGGTGG+TGG | + | chr7.2:4246423-4246442 | None:intergenic | 65.0% | |
GAGCAACAGCACGGTAGCCG+AGG | + | chr7.2:4245316-4245335 | None:intergenic | 65.0% | |
GCTGTTGCTCCGGATCTCCG+TGG | - | chr7.2:4245326-4245345 | MS.gene37321:CDS | 65.0% | |
! | CGGCTACCGTGCTGTTGCTC+CGG | - | chr7.2:4245316-4245335 | MS.gene37321:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 4245164 | 4247685 | 4245164 | ID=MS.gene37321 |
chr7.2 | mRNA | 4245164 | 4247685 | 4245164 | ID=MS.gene37321.t1;Parent=MS.gene37321 |
chr7.2 | exon | 4247218 | 4247685 | 4247218 | ID=MS.gene37321.t1.exon1;Parent=MS.gene37321.t1 |
chr7.2 | CDS | 4247218 | 4247685 | 4247218 | ID=cds.MS.gene37321.t1;Parent=MS.gene37321.t1 |
chr7.2 | exon | 4245741 | 4245985 | 4245741 | ID=MS.gene37321.t1.exon2;Parent=MS.gene37321.t1 |
chr7.2 | CDS | 4245741 | 4245985 | 4245741 | ID=cds.MS.gene37321.t1;Parent=MS.gene37321.t1 |
chr7.2 | exon | 4245164 | 4245410 | 4245164 | ID=MS.gene37321.t1.exon3;Parent=MS.gene37321.t1 |
chr7.2 | CDS | 4245164 | 4245410 | 4245164 | ID=cds.MS.gene37321.t1;Parent=MS.gene37321.t1 |
Gene Sequence |
Protein sequence |