AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37321


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37321.t1 MTR_7g113030 97.179 319 9 0 1 319 1 319 0.0 649
MS.gene37321.t1 MTR_7g113050 94.357 319 18 0 1 319 1 319 0.0 633
MS.gene37321.t1 MTR_7g112615 91.850 319 26 0 1 319 1 319 0.0 616
MS.gene37321.t1 MTR_7g112620 86.834 319 42 0 1 319 1 319 0.0 589
MS.gene37321.t1 MTR_7g113020 86.207 319 44 0 1 319 1 319 0.0 587
MS.gene37321.t1 MTR_7g112960 75.862 319 77 0 1 319 1 319 0.0 520
MS.gene37321.t1 MTR_7g112963 76.176 319 76 0 1 319 1 319 0.0 513
MS.gene37321.t1 MTR_7g112970 75.549 319 75 1 1 319 1 316 0.0 511
MS.gene37321.t1 MTR_4g005160 73.684 323 80 3 1 319 1 322 0.0 508
MS.gene37321.t1 MTR_7g113050 93.249 237 16 0 1 237 1 237 3.23e-169 469
MS.gene37321.t1 MTR_7g112615 91.561 237 20 0 1 237 1 237 4.68e-166 461
MS.gene37321.t1 MTR_7g113010 72.242 281 78 0 1 281 1 281 7.64e-153 441
MS.gene37321.t1 MTR_4g120240 61.059 321 121 3 1 319 37 355 7.11e-145 412
MS.gene37321.t1 MTR_7g108825 60.815 319 123 2 1 319 1 317 8.07e-141 400
MS.gene37321.t1 MTR_8g076680 48.297 323 155 4 1 319 3 317 2.37e-106 313
MS.gene37321.t1 MTR_7g112615 90.566 159 15 0 1 159 1 159 3.48e-106 307
MS.gene37321.t1 MTR_7g108825 59.494 237 94 2 1 237 1 235 5.34e-98 289
MS.gene37321.t1 MTR_7g112910 58.635 249 48 5 72 319 1 195 1.93e-90 268
MS.gene37321.t1 MTR_1g083480 78.616 159 30 2 1 156 1 158 5.74e-90 266
MS.gene37321.t1 MTR_8g076680 49.378 241 112 3 1 237 3 237 3.57e-81 246
MS.gene37321.t1 MTR_2g090240 36.760 321 189 6 1 318 1 310 1.06e-66 212
MS.gene37321.t1 MTR_4g089060 36.760 321 188 6 1 318 1 309 2.03e-65 208
MS.gene37321.t1 MTR_3g024250 86.916 107 14 0 46 152 1 107 3.39e-65 202
MS.gene37321.t1 MTR_2g090245 35.826 321 192 7 1 318 1 310 6.64e-63 202
MS.gene37321.t1 MTR_4g089040 36.137 321 190 6 1 318 1 309 6.76e-63 202
MS.gene37321.t1 MTR_4g089060 34.195 348 187 7 1 318 1 336 2.77e-60 196
MS.gene37321.t1 MTR_4g089060 39.056 233 133 3 1 231 1 226 8.41e-54 176
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37321.t1 AT3G05600 60.185 324 124 4 1 319 1 324 2.43e-147 417
MS.gene37321.t1 AT4G02340 57.188 320 132 3 1 319 1 316 5.99e-138 394
MS.gene37321.t1 AT2G26740 61.180 322 118 4 4 319 1 321 8.06e-130 373
MS.gene37321.t1 AT4G15960 52.615 325 147 3 1 319 51 374 1.36e-124 362
MS.gene37321.t1 AT2G26750 58.567 321 127 4 4 319 1 320 2.51e-124 359
MS.gene37321.t1 AT4G15955 50.613 326 123 4 5 319 6 304 9.91e-110 321
MS.gene37321.t1 AT3G05600 61.157 242 89 4 1 237 1 242 6.76e-108 314
MS.gene37321.t1 AT3G51000 48.428 318 159 5 4 319 5 319 3.98e-103 305
MS.gene37321.t1 AT4G15955 60.920 174 58 2 5 168 6 179 8.75e-72 220
MS.gene37321.t1 AT4G15955 61.212 165 54 2 5 159 6 170 1.26e-67 209

Find 84 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATAAGCTTTGATTCTTTC+AGG 0.126719 7.2:+4247318 None:intergenic
GGCATCAACGGTCCTGATTT+TGG 0.162298 7.2:+4247263 None:intergenic
CCTCTTGTCTTGTTCCTTCA+TGG 0.187509 7.2:-4247588 MS.gene37321:CDS
TTATTACATATGTAGATTTC+AGG 0.264776 7.2:-4247217 MS.gene37321:intron
AAAATGCATATTGCTGAAAA+AGG 0.266560 7.2:-4247621 MS.gene37321:CDS
AACTCTCCCTTGGGAAATAT+TGG 0.280214 7.2:+4245876 None:intergenic
ATATTTCCCAAGGGAGAGTT+TGG 0.305783 7.2:-4245873 MS.gene37321:CDS
CGCCATGAATACCACAGTTC+GGG 0.324950 7.2:+4247561 None:intergenic
CACAGAACAGTGGAAGTAAA+TGG 0.328559 7.2:-4247648 MS.gene37321:CDS
ATTTCTTGTGGCTCATGATT+GGG 0.336317 7.2:-4247376 MS.gene37321:CDS
AGCTGATGGCACCATGGAAT+GGG 0.338259 7.2:-4245380 MS.gene37321:CDS
TATTTCTTGTGGCTCATGAT+TGG 0.353373 7.2:-4247377 MS.gene37321:CDS
GTCTCCAAATTTGAGAAAAC+AGG 0.355343 7.2:-4245780 MS.gene37321:CDS
GATAATCACTTCTTCCAGAT+TGG 0.362380 7.2:+4245248 None:intergenic
CATGATTGGGGTGCCATCAT+TGG 0.372270 7.2:-4247363 MS.gene37321:CDS
GATGCCATGCATGCTGCTTA+TGG 0.379998 7.2:-4247246 MS.gene37321:CDS
ACCCTCACAACTCGGAAAAC+TGG 0.389484 7.2:-4245903 MS.gene37321:CDS
CCCAAGGGAGAGTTTGGAAC+TGG 0.389949 7.2:-4245867 MS.gene37321:CDS
AGCCAAGAGGGTAAGGTGTC+AGG 0.390169 7.2:+4245828 None:intergenic
ATCACAGGAACCAGGCAAAA+TGG 0.395142 7.2:-4245970 MS.gene37321:intron
GCTCCGGATCTCCGTGGTTA+TGG 0.399328 7.2:-4247495 MS.gene37321:CDS
TTACTTGTATTGTAGAAATT+GGG 0.399713 7.2:-4245403 MS.gene37321:intron
TCCCCGAACTGTGGTATTCA+TGG 0.400391 7.2:-4247563 MS.gene37321:CDS
GAAGAAGTGATTATCCAAAA+AGG 0.403789 7.2:-4245240 MS.gene37321:CDS
CTCCTGACACCTTACCCTCT+TGG 0.407073 7.2:-4245830 MS.gene37321:CDS
CATAAGCTTTGATTCTTTCA+GGG 0.418162 7.2:+4247319 None:intergenic
GTGCCTGTGAAATTCATTAC+AGG 0.432209 7.2:-4245345 MS.gene37321:CDS
CAAGGAAGATGTGCCCAATC+TGG 0.434486 7.2:-4245262 MS.gene37321:CDS
TCCGTAGAAACCCCAAAATC+AGG 0.443771 7.2:-4247275 MS.gene37321:CDS
ATAATCACTTCTTCCAGATT+GGG 0.447163 7.2:+4245249 None:intergenic
TCCAGTTCCAAACTCTCCCT+TGG 0.447351 7.2:+4245866 None:intergenic
CGGCTACCGTGCTGTTGCTC+CGG 0.456232 7.2:-4247511 MS.gene37321:CDS
TTCTGTAAGCCAAGAGGGTA+AGG 0.457253 7.2:+4245821 None:intergenic
GAAAATCTATAAGTGCAATA+AGG 0.461083 7.2:+4247415 None:intergenic
GCGCCATGAATACCACAGTT+CGG 0.461173 7.2:+4247560 None:intergenic
GAGCTGATGGCACCATGGAA+TGG 0.461653 7.2:-4245381 MS.gene37321:CDS
TCACCATAACCACGGAGATC+CGG 0.490155 7.2:+4247492 None:intergenic
CCAGTTCCAAACTCTCCCTT+GGG 0.501905 7.2:+4245867 None:intergenic
ACAAAGATACCAACCAATGA+TGG 0.534758 7.2:+4247350 None:intergenic
AGGCAAAATGGAAGCTGAGA+TGG 0.540634 7.2:-4245958 MS.gene37321:CDS
ATGGAATGGGGTGAAAATCA+AGG 0.540835 7.2:-4245367 MS.gene37321:CDS
TTTCTTGTGGCTCATGATTG+GGG 0.543062 7.2:-4247375 MS.gene37321:CDS
TCTCCCTTGGGAAATATTGG+AGG 0.546141 7.2:+4245879 None:intergenic
TTGGGGTTTCTACGGAGTAG+TGG 0.547389 7.2:+4247282 None:intergenic
ATTGTAGCTCTCAGCTCCCT+CGG 0.548619 7.2:-4247531 MS.gene37321:CDS
ATCTCCATAAGCAGCATGCA+TGG 0.554133 7.2:+4247242 None:intergenic
TCTTCTTCTGTAAGCCAAGA+GGG 0.563661 7.2:+4245816 None:intergenic
GAGCAACAGCACGGTAGCCG+AGG 0.563671 7.2:+4247514 None:intergenic
TCACCTGTAATGAATTTCAC+AGG 0.570947 7.2:+4245342 None:intergenic
AGCAACAGCACGGTAGCCGA+GGG 0.572130 7.2:+4247515 None:intergenic
ATTGGGGTGCCATCATTGGT+TGG 0.574625 7.2:-4247359 MS.gene37321:CDS
ACAGTTCGGGGAAGCCATGA+AGG 0.577839 7.2:+4247574 None:intergenic
GAAGGAGTATATCCATGGTG+GGG 0.578871 7.2:-4245289 MS.gene37321:CDS
TGAAGGAGTATATCCATGGT+GGG 0.583874 7.2:-4245290 MS.gene37321:CDS
TGGTCCTCCAATATTTCCCA+AGG 0.588717 7.2:-4245883 MS.gene37321:CDS
GAAGCTGAGATGGCTGAAGT+TGG 0.590883 7.2:-4245948 MS.gene37321:CDS
AGCTGAGAGCTACAATCTGA+TGG 0.590990 7.2:+4247538 None:intergenic
AGCAGCATGCATGGCATCAA+CGG 0.592010 7.2:+4247251 None:intergenic
TGGTCCGCATCACAGGAACC+AGG 0.594410 7.2:-4245978 MS.gene37321:intron
TCTTCAGTTAGTAGCTACAC+AGG 0.594878 7.2:-4247456 MS.gene37321:CDS
AAGGAGTATATCCATGGTGG+GGG 0.600787 7.2:-4245288 MS.gene37321:CDS
TTCATGGCTTCCCCGAACTG+TGG 0.605850 7.2:-4247572 MS.gene37321:CDS
TGTTGATCAAGTATTTCTTG+TGG 0.608957 7.2:-4247388 MS.gene37321:CDS
CAACAATCAAGAAGCAGCAG+AGG 0.610084 7.2:-4245205 MS.gene37321:CDS
ACTAACTGAAGACGGAGCAT+CGG 0.615174 7.2:+4247467 None:intergenic
CCATGAAGGAACAAGACAAG+AGG 0.618716 7.2:+4247588 None:intergenic
TTGTAGAAATTGGGAGCTGA+TGG 0.619295 7.2:-4245394 MS.gene37321:intron
AACATGAAGGAGTATATCCA+TGG 0.620148 7.2:-4245294 MS.gene37321:CDS
ATACTCCTTCATGTTTAGTG+AGG 0.623538 7.2:+4245302 None:intergenic
GCTGATGGCACCATGGAATG+GGG 0.628565 7.2:-4245379 MS.gene37321:CDS
GTTTGGAACTGGATTCAACT+CGG 0.629425 7.2:-4245856 MS.gene37321:CDS
ATTTGGAGACAAAATAAGCA+AGG 0.634682 7.2:+4245793 None:intergenic
ATGAAGGAGTATATCCATGG+TGG 0.640343 7.2:-4245291 MS.gene37321:CDS
TGAAAAGTACCCTCACAACT+CGG 0.640586 7.2:-4245911 MS.gene37321:CDS
ATTGGGAGCTGATGGCACCA+TGG 0.649732 7.2:-4245386 MS.gene37321:CDS
GTCTTCTTCTGTAAGCCAAG+AGG 0.650739 7.2:+4245815 None:intergenic
GTGTAGCTACTAACTGAAGA+CGG 0.652352 7.2:+4247459 None:intergenic
ATACACCTCACTAAACATGA+AGG 0.662683 7.2:-4245307 MS.gene37321:CDS
GGAGATCCGGAGCAACAGCA+CGG 0.668358 7.2:+4247505 None:intergenic
AGGAATAGAACACAGAACAG+TGG 0.676997 7.2:-4247658 MS.gene37321:CDS
GCCATGAATACCACAGTTCG+GGG 0.692309 7.2:+4247562 None:intergenic
GGTCCTCCAATATTTCCCAA+GGG 0.706108 7.2:-4245882 MS.gene37321:CDS
GCTGTTGCTCCGGATCTCCG+TGG 0.713696 7.2:-4247501 MS.gene37321:CDS
CATCGGTGTCACCATAACCA+CGG 0.714613 7.2:+4247484 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGTGATTTTATTTTAT+AGG + chr7.2:4245786-4245805 None:intergenic 10.0%
!!! AAATGTGATTTTATTTTATA+GGG + chr7.2:4245785-4245804 None:intergenic 10.0%
!! AATACTTAATAACTAAATTC+AGG - chr7.2:4246032-4246051 MS.gene37321:intron 15.0%
!! ATACTTAATAACTAAATTCA+GGG - chr7.2:4246033-4246052 MS.gene37321:intron 15.0%
!! ATTGTTTAATATAATTAAGG+AGG - chr7.2:4246162-4246181 MS.gene37321:intron 15.0%
!! CAAAATTCTAAATATTTAGA+TGG + chr7.2:4245754-4245773 None:intergenic 15.0%
!! GAGATTGTTTAATATAATTA+AGG - chr7.2:4246159-4246178 MS.gene37321:intron 15.0%
!! TTATGAGTCATAAAATATTA+GGG + chr7.2:4245703-4245722 None:intergenic 15.0%
!! TTTATGAGTCATAAAATATT+AGG + chr7.2:4245704-4245723 None:intergenic 15.0%
!!! ATGTTGATGAAAAATTTTAT+AGG + chr7.2:4245815-4245834 None:intergenic 15.0%
!!! TGTTGATGAAAAATTTTATA+GGG + chr7.2:4245814-4245833 None:intergenic 15.0%
!! AAACTTAATTATATAGATGC+AGG - chr7.2:4246002-4246021 MS.gene37321:intron 20.0%
!! ACAAAACTGTGAATATTTAT+AGG - chr7.2:4245973-4245992 MS.gene37321:intron 20.0%
!! ATTACTTGTATTGTAGAAAT+TGG - chr7.2:4247423-4247442 MS.gene37321:CDS 20.0%
!! ATTGATTATTGAATACGTTA+GGG - chr7.2:4246585-4246604 MS.gene37321:intron 20.0%
!! CAAAACTGTGAATATTTATA+GGG - chr7.2:4245974-4245993 MS.gene37321:intron 20.0%
!! TATGACTCATAAAATATACA+GGG - chr7.2:4245711-4245730 MS.gene37321:intron 20.0%
!! TCTGTTTCAAAACATTATAT+TGG + chr7.2:4246761-4246780 None:intergenic 20.0%
!! TTACTTGTATTGTAGAAATT+GGG - chr7.2:4247424-4247443 MS.gene37321:CDS 20.0%
!! TTATGACTCATAAAATATAC+AGG - chr7.2:4245710-4245729 MS.gene37321:intron 20.0%
!! TTATTACATATGTAGATTTC+AGG - chr7.2:4245610-4245629 MS.gene37321:intron 20.0%
!!! AAAATATCCATCAACATTTT+TGG - chr7.2:4245882-4245901 MS.gene37321:CDS 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG - chr7.2:4245942-4245961 MS.gene37321:CDS 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG - chr7.2:4245943-4245962 MS.gene37321:CDS 20.0%
!!! ACCAATAACAGTTTTAAAAA+TGG + chr7.2:4247299-4247318 None:intergenic 20.0%
!!! TATTGATTATTGAATACGTT+AGG - chr7.2:4246584-4246603 MS.gene37321:intron 20.0%
!!! TCCATTTTTAAAACTGTTAT+TGG - chr7.2:4247295-4247314 MS.gene37321:CDS 20.0%
!!! TGTTAAAACATTTTACCAAA+AGG + chr7.2:4247172-4247191 None:intergenic 20.0%
!!! TGTTGATGGAAAATTTTTAT+AGG + chr7.2:4245846-4245865 None:intergenic 20.0%
!!! TTAAAAAAAGCACTTGATTA+AGG - chr7.2:4246305-4246324 MS.gene37321:intron 20.0%
!!! TTAATCAAGTGCTTTTTTTA+AGG + chr7.2:4246306-4246325 None:intergenic 20.0%
!!! TTTGTTTATCTAAAATGAAG+TGG - chr7.2:4246785-4246804 MS.gene37321:intron 20.0%
! AAAATGCATATTGCTGAAAA+AGG - chr7.2:4245206-4245225 MS.gene37321:CDS 25.0%
! AATGCATCTTTCATTAGAAT+TGG + chr7.2:4247403-4247422 None:intergenic 25.0%
! ACAAAGACTAAAAATGTTGA+TGG + chr7.2:4245860-4245879 None:intergenic 25.0%
! AGAATTGTATGACATCATAA+TGG - chr7.2:4246642-4246661 MS.gene37321:intron 25.0%
! ATGATATGTAGCTAAAAGAA+AGG + chr7.2:4246695-4246714 None:intergenic 25.0%
! ATGCATCTTTCATTAGAATT+GGG + chr7.2:4247402-4247421 None:intergenic 25.0%
! ATTTATTTGAGAGGATTTAC+GGG - chr7.2:4246132-4246151 MS.gene37321:intron 25.0%
! GAAAATCTATAAGTGCAATA+AGG + chr7.2:4245415-4245434 None:intergenic 25.0%
! GAATTAACTGATCAACTATA+AGG + chr7.2:4246502-4246521 None:intergenic 25.0%
! GAATTGTCAACATATATTTG+TGG + chr7.2:4247150-4247169 None:intergenic 25.0%
! GATTGCTTAAAGTAAATTAG+GGG + chr7.2:4245681-4245700 None:intergenic 25.0%
! GATTTATTTGAGAGGATTTA+CGG - chr7.2:4246131-4246150 MS.gene37321:intron 25.0%
! GGATTGCTTAAAGTAAATTA+GGG + chr7.2:4245682-4245701 None:intergenic 25.0%
! TACAGGGTTAATTAAGTAAA+TGG - chr7.2:4245727-4245746 MS.gene37321:intron 25.0%
! TCAAATAAATCTATCCAAAC+AGG + chr7.2:4246122-4246141 None:intergenic 25.0%
! TGATTGAATATAACATGTGT+CGG + chr7.2:4247273-4247292 None:intergenic 25.0%
! TTTGGATAGATTTATTTGAG+AGG - chr7.2:4246123-4246142 MS.gene37321:intron 25.0%
!! ACATTTTCCTTAAGCATTTT+AGG + chr7.2:4245910-4245929 None:intergenic 25.0%
!! ATTGCACTTATAGATTTTCT+GGG - chr7.2:4245416-4245435 MS.gene37321:intron 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG + chr7.2:4245909-4245928 None:intergenic 25.0%
!! CTGAATAACATAATTGCTTT+TGG - chr7.2:4246829-4246848 MS.gene37321:intron 25.0%
!! TATATGTTGACAATTCCTTT+TGG - chr7.2:4247154-4247173 MS.gene37321:intron 25.0%
!! TATTGCACTTATAGATTTTC+TGG - chr7.2:4245415-4245434 MS.gene37321:intron 25.0%
!!! TCTTATGATTTTAGTTTGAG+TGG - chr7.2:4246061-4246080 MS.gene37321:intron 25.0%
AATCAAGTGTTAAATCCACT+TGG + chr7.2:4246439-4246458 None:intergenic 30.0%
AGTAGAGTCTAAATCAAAAG+AGG - chr7.2:4246473-4246492 MS.gene37321:intron 30.0%
ATAATCACTTCTTCCAGATT+GGG + chr7.2:4247581-4247600 None:intergenic 30.0%
ATCAAGTGTTAAATCCACTT+GGG + chr7.2:4246438-4246457 None:intergenic 30.0%
ATTGCTGAAAAAGGAAAAGA+AGG - chr7.2:4245215-4245234 MS.gene37321:CDS 30.0%
ATTTGGAGACAAAATAAGCA+AGG + chr7.2:4247037-4247056 None:intergenic 30.0%
CAACATGACAATAATCTATG+CGG - chr7.2:4247190-4247209 MS.gene37321:intron 30.0%
GAAGAAGTGATTATCCAAAA+AGG - chr7.2:4247587-4247606 MS.gene37321:CDS 30.0%
GGGATTGCTTAAAGTAAATT+AGG + chr7.2:4245683-4245702 None:intergenic 30.0%
TGTTGATCAAGTATTTCTTG+TGG - chr7.2:4245439-4245458 MS.gene37321:intron 30.0%
! ACATAAGCTTTGATTCTTTC+AGG + chr7.2:4245512-4245531 None:intergenic 30.0%
! ACATGTTGTGCATTTTGTTA+GGG - chr7.2:4246556-4246575 MS.gene37321:intron 30.0%
! CATAAGCTTTGATTCTTTCA+GGG + chr7.2:4245511-4245530 None:intergenic 30.0%
! TACACAGGTTTTCATATAGT+AGG - chr7.2:4245386-4245405 MS.gene37321:CDS 30.0%
ACAAAGATACCAACCAATGA+TGG + chr7.2:4245480-4245499 None:intergenic 35.0%
ACAACGCTAAACACAAACAT+TGG + chr7.2:4247343-4247362 None:intergenic 35.0%
AGTGATTATCCAAAAAGGAG+TGG - chr7.2:4247592-4247611 MS.gene37321:CDS 35.0%
ATACACCTCACTAAACATGA+AGG - chr7.2:4247520-4247539 MS.gene37321:CDS 35.0%
ATACTCCTTCATGTTTAGTG+AGG + chr7.2:4247528-4247547 None:intergenic 35.0%
ATGCTTAAGGAAAATGTCAC+AGG - chr7.2:4245913-4245932 MS.gene37321:CDS 35.0%
ATTTCTTGTGGCTCATGATT+GGG - chr7.2:4245451-4245470 MS.gene37321:intron 35.0%
CAGAGACAAAAGTAGAAAAG+TGG + chr7.2:4245655-4245674 None:intergenic 35.0%
GATAATCACTTCTTCCAGAT+TGG + chr7.2:4247582-4247601 None:intergenic 35.0%
GTCTCCAAATTTGAGAAAAC+AGG - chr7.2:4247047-4247066 MS.gene37321:intron 35.0%
TATCAACACGTATCAAACAC+CGG + chr7.2:4247243-4247262 None:intergenic 35.0%
TATTTCTTGTGGCTCATGAT+TGG - chr7.2:4245450-4245469 MS.gene37321:intron 35.0%
TCACCTGTAATGAATTTCAC+AGG + chr7.2:4247488-4247507 None:intergenic 35.0%
TCTGAGTAGGGTAATACTTT+AGG + chr7.2:4246719-4246738 None:intergenic 35.0%
TGCTTAAGGAAAATGTCACA+GGG - chr7.2:4245914-4245933 MS.gene37321:CDS 35.0%
TTAGGGACCAAAAATGTTGA+TGG + chr7.2:4245892-4245911 None:intergenic 35.0%
TTTGGTCCCTAAAATGCTTA+AGG - chr7.2:4245900-4245919 MS.gene37321:CDS 35.0%
! AACATGAAGGAGTATATCCA+TGG - chr7.2:4247533-4247552 MS.gene37321:CDS 35.0%
! AATATAACATGTGTCGGTGT+CGG + chr7.2:4247267-4247286 None:intergenic 35.0%
! GAAGCCTGTTTTCTCAAATT+TGG + chr7.2:4247054-4247073 None:intergenic 35.0%
! GACATGTTGTGCATTTTGTT+AGG - chr7.2:4246555-4246574 MS.gene37321:intron 35.0%
! TATTTTCCCTGTGCCAATTT+CGG + chr7.2:4246360-4246379 None:intergenic 35.0%
!! AGGGTGAAGTTCTCTTATTT+TGG - chr7.2:4246604-4246623 MS.gene37321:intron 35.0%
!!! GGGTGAAGTTCTCTTATTTT+GGG - chr7.2:4246605-4246624 MS.gene37321:intron 35.0%
AACTCTCCCTTGGGAAATAT+TGG + chr7.2:4246954-4246973 None:intergenic 40.0%
AGGAATAGAACACAGAACAG+TGG - chr7.2:4245169-4245188 MS.gene37321:CDS 40.0%
AGTATCTCTCTTAAGGTGAC+AGG + chr7.2:4246386-4246405 None:intergenic 40.0%
AGTGTTAAATCCACTTGGGA+TGG + chr7.2:4246434-4246453 None:intergenic 40.0%
AGTTTGAGTGGTGTTTGATG+TGG - chr7.2:4246073-4246092 MS.gene37321:intron 40.0%
ATATTTCCCAAGGGAGAGTT+TGG - chr7.2:4246954-4246973 MS.gene37321:intron 40.0%
ATCAACACGTATCAAACACC+GGG + chr7.2:4247242-4247261 None:intergenic 40.0%
ATGATACTGATACGCCTGTT+TGG - chr7.2:4246105-4246124 MS.gene37321:intron 40.0%
ATGGAATGGGGTGAAAATCA+AGG - chr7.2:4247460-4247479 MS.gene37321:CDS 40.0%
CACAGAACAGTGGAAGTAAA+TGG - chr7.2:4245179-4245198 MS.gene37321:CDS 40.0%
GTGCCTGTGAAATTCATTAC+AGG - chr7.2:4247482-4247501 MS.gene37321:CDS 40.0%
GTGTAGCTACTAACTGAAGA+CGG + chr7.2:4245371-4245390 None:intergenic 40.0%
GTTTGAGTGGTGTTTGATGT+GGG - chr7.2:4246074-4246093 MS.gene37321:intron 40.0%
TCTTCAGTTAGTAGCTACAC+AGG - chr7.2:4245371-4245390 MS.gene37321:CDS 40.0%
TCTTCTTCTGTAAGCCAAGA+GGG + chr7.2:4247014-4247033 None:intergenic 40.0%
TTGTAGAAATTGGGAGCTGA+TGG - chr7.2:4247433-4247452 MS.gene37321:CDS 40.0%
TTTCTTGTGGCTCATGATTG+GGG - chr7.2:4245452-4245471 MS.gene37321:intron 40.0%
! AGACTGGAGTATCTCTCTTA+AGG + chr7.2:4246393-4246412 None:intergenic 40.0%
! ATGAAGGAGTATATCCATGG+TGG - chr7.2:4247536-4247555 MS.gene37321:CDS 40.0%
! GTTTGGAACTGGATTCAACT+CGG - chr7.2:4246971-4246990 MS.gene37321:intron 40.0%
! TGAAGGAGTATATCCATGGT+GGG - chr7.2:4247537-4247556 MS.gene37321:CDS 40.0%
! TTGATTTTCACCCCATTCCA+TGG + chr7.2:4247461-4247480 None:intergenic 40.0%
!! TGAAAAGTACCCTCACAACT+CGG - chr7.2:4246916-4246935 MS.gene37321:intron 40.0%
!!! TCCTGATTTTGGGGTTTCTA+CGG + chr7.2:4245556-4245575 None:intergenic 40.0%
AAGAGAGATACTCCAGTCTC+AGG - chr7.2:4246394-4246413 MS.gene37321:intron 45.0%
ACGAGCGATTCAATCTGAGT+AGG + chr7.2:4246732-4246751 None:intergenic 45.0%
ACTAACTGAAGACGGAGCAT+CGG + chr7.2:4245363-4245382 None:intergenic 45.0%
AGCTGAGAGCTACAATCTGA+TGG + chr7.2:4245292-4245311 None:intergenic 45.0%
AGGCAAAATGGAAGCTGAGA+TGG - chr7.2:4246869-4246888 MS.gene37321:intron 45.0%
ATCACAGGAACCAGGCAAAA+TGG - chr7.2:4246857-4246876 MS.gene37321:intron 45.0%
ATCTCCATAAGCAGCATGCA+TGG + chr7.2:4245588-4245607 None:intergenic 45.0%
CAACAATCAAGAAGCAGCAG+AGG - chr7.2:4247622-4247641 MS.gene37321:CDS 45.0%
CCATGAAGGAACAAGACAAG+AGG + chr7.2:4245242-4245261 None:intergenic 45.0%
CGAGCGATTCAATCTGAGTA+GGG + chr7.2:4246731-4246750 None:intergenic 45.0%
GGTCCTCCAATATTTCCCAA+GGG - chr7.2:4246945-4246964 MS.gene37321:intron 45.0%
GTCTTCTTCTGTAAGCCAAG+AGG + chr7.2:4247015-4247034 None:intergenic 45.0%
TCCGTAGAAACCCCAAAATC+AGG - chr7.2:4245552-4245571 MS.gene37321:intron 45.0%
TCGATCTATCCCACCGAAAT+TGG - chr7.2:4246344-4246363 MS.gene37321:intron 45.0%
TCTCCCTTGGGAAATATTGG+AGG + chr7.2:4246951-4246970 None:intergenic 45.0%
TGGTCCTCCAATATTTCCCA+AGG - chr7.2:4246944-4246963 MS.gene37321:intron 45.0%
TTCTGTAAGCCAAGAGGGTA+AGG + chr7.2:4247009-4247028 None:intergenic 45.0%
TTTCAGTTTGAAGACGTGCC+CGG - chr7.2:4247221-4247240 MS.gene37321:CDS 45.0%
! AAGGAGTATATCCATGGTGG+GGG - chr7.2:4247539-4247558 MS.gene37321:CDS 45.0%
! ACCAGTTTTCCGAGTTGTGA+GGG + chr7.2:4246928-4246947 None:intergenic 45.0%
! ATCTCAGCTTCCATTTTGCC+TGG + chr7.2:4246870-4246889 None:intergenic 45.0%
! CATCAACGGTCCTGATTTTG+GGG + chr7.2:4245565-4245584 None:intergenic 45.0%
! CCTCTTGTCTTGTTCCTTCA+TGG - chr7.2:4245239-4245258 MS.gene37321:CDS 45.0%
! GAAGGAGTATATCCATGGTG+GGG - chr7.2:4247538-4247557 MS.gene37321:CDS 45.0%
! GCATCAACGGTCCTGATTTT+GGG + chr7.2:4245566-4245585 None:intergenic 45.0%
ACCCTCACAACTCGGAAAAC+TGG - chr7.2:4246924-4246943 MS.gene37321:intron 50.0%
AGCAGCATGCATGGCATCAA+CGG + chr7.2:4245579-4245598 None:intergenic 50.0%
AGCTGATGGCACCATGGAAT+GGG - chr7.2:4247447-4247466 MS.gene37321:CDS 50.0%
ATCCCACCGAAATTGGCACA+GGG - chr7.2:4246351-4246370 MS.gene37321:intron 50.0%
ATTGTAGCTCTCAGCTCCCT+CGG - chr7.2:4245296-4245315 MS.gene37321:CDS 50.0%
CAAGGAAGATGTGCCCAATC+TGG - chr7.2:4247565-4247584 MS.gene37321:CDS 50.0%
CCAGTTCCAAACTCTCCCTT+GGG + chr7.2:4246963-4246982 None:intergenic 50.0%
CGCCATGAATACCACAGTTC+GGG + chr7.2:4245269-4245288 None:intergenic 50.0%
GAAGCTGAGATGGCTGAAGT+TGG - chr7.2:4246879-4246898 MS.gene37321:intron 50.0%
GCCATGAATACCACAGTTCG+GGG + chr7.2:4245268-4245287 None:intergenic 50.0%
GCGCCATGAATACCACAGTT+CGG + chr7.2:4245270-4245289 None:intergenic 50.0%
TAAATCCACTTGGGATGGCC+TGG + chr7.2:4246429-4246448 None:intergenic 50.0%
TATCCCACCGAAATTGGCAC+AGG - chr7.2:4246350-4246369 MS.gene37321:intron 50.0%
TCACCATAACCACGGAGATC+CGG + chr7.2:4245338-4245357 None:intergenic 50.0%
TCCAGTTCCAAACTCTCCCT+TGG + chr7.2:4246964-4246983 None:intergenic 50.0%
TCCCCGAACTGTGGTATTCA+TGG - chr7.2:4245264-4245283 MS.gene37321:CDS 50.0%
TTCCCTGTGCCAATTTCGGT+GGG + chr7.2:4246356-4246375 None:intergenic 50.0%
TTGGGGTTTCTACGGAGTAG+TGG + chr7.2:4245548-4245567 None:intergenic 50.0%
TTTCCCTGTGCCAATTTCGG+TGG + chr7.2:4246357-4246376 None:intergenic 50.0%
TTTGCCTGGTTCCTGTGATG+CGG + chr7.2:4246856-4246875 None:intergenic 50.0%
! ATTGGGGTGCCATCATTGGT+TGG - chr7.2:4245468-4245487 MS.gene37321:intron 50.0%
! CATGATTGGGGTGCCATCAT+TGG - chr7.2:4245464-4245483 MS.gene37321:intron 50.0%
! GACCAGTTTTCCGAGTTGTG+AGG + chr7.2:4246929-4246948 None:intergenic 50.0%
! GATGCCATGCATGCTGCTTA+TGG - chr7.2:4245581-4245600 MS.gene37321:intron 50.0%
! GGCATCAACGGTCCTGATTT+TGG + chr7.2:4245567-4245586 None:intergenic 50.0%
! TATCCATGGTGGGGGATTCA+AGG - chr7.2:4247547-4247566 MS.gene37321:CDS 50.0%
! TGAAGTGCGCCACTCCTTTT+TGG + chr7.2:4247604-4247623 None:intergenic 50.0%
!! CATCGGTGTCACCATAACCA+CGG + chr7.2:4245346-4245365 None:intergenic 50.0%
!! TTGCTTTTGGTCCGCATCAC+AGG - chr7.2:4246842-4246861 MS.gene37321:intron 50.0%
ACAGTTCGGGGAAGCCATGA+AGG + chr7.2:4245256-4245275 None:intergenic 55.0%
ATTGGGAGCTGATGGCACCA+TGG - chr7.2:4247441-4247460 MS.gene37321:CDS 55.0%
CTCCTGACACCTTACCCTCT+TGG - chr7.2:4246997-4247016 MS.gene37321:intron 55.0%
CTTCCTTGAATCCCCCACCA+TGG + chr7.2:4247553-4247572 None:intergenic 55.0%
GAGCTGATGGCACCATGGAA+TGG - chr7.2:4247446-4247465 MS.gene37321:CDS 55.0%
GCTGATGGCACCATGGAATG+GGG - chr7.2:4247448-4247467 MS.gene37321:CDS 55.0%
TTCATGGCTTCCCCGAACTG+TGG - chr7.2:4245255-4245274 MS.gene37321:CDS 55.0%
! AGCCAAGAGGGTAAGGTGTC+AGG + chr7.2:4247002-4247021 None:intergenic 55.0%
! CCCAAGGGAGAGTTTGGAAC+TGG - chr7.2:4246960-4246979 MS.gene37321:intron 55.0%
AGCAACAGCACGGTAGCCGA+GGG + chr7.2:4245315-4245334 None:intergenic 60.0%
AGTCTCAGGACACCACCACC+AGG - chr7.2:4246408-4246427 MS.gene37321:intron 60.0%
ATCCACTTGGGATGGCCTGG+TGG + chr7.2:4246426-4246445 None:intergenic 60.0%
GCTCCGGATCTCCGTGGTTA+TGG - chr7.2:4245332-4245351 MS.gene37321:CDS 60.0%
GGAGATCCGGAGCAACAGCA+CGG + chr7.2:4245325-4245344 None:intergenic 60.0%
TGGTCCGCATCACAGGAACC+AGG - chr7.2:4246849-4246868 MS.gene37321:intron 60.0%
!! TGGTGGTGGTGTCCTGAGAC+TGG + chr7.2:4246409-4246428 None:intergenic 60.0%
CACCACCAGGCCATCCCAAG+TGG - chr7.2:4246421-4246440 MS.gene37321:intron 65.0%
CACTTGGGATGGCCTGGTGG+TGG + chr7.2:4246423-4246442 None:intergenic 65.0%
GAGCAACAGCACGGTAGCCG+AGG + chr7.2:4245316-4245335 None:intergenic 65.0%
GCTGTTGCTCCGGATCTCCG+TGG - chr7.2:4245326-4245345 MS.gene37321:CDS 65.0%
! CGGCTACCGTGCTGTTGCTC+CGG - chr7.2:4245316-4245335 MS.gene37321:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 4245164 4247685 4245164 ID=MS.gene37321
chr7.2 mRNA 4245164 4247685 4245164 ID=MS.gene37321.t1;Parent=MS.gene37321
chr7.2 exon 4247218 4247685 4247218 ID=MS.gene37321.t1.exon1;Parent=MS.gene37321.t1
chr7.2 CDS 4247218 4247685 4247218 ID=cds.MS.gene37321.t1;Parent=MS.gene37321.t1
chr7.2 exon 4245741 4245985 4245741 ID=MS.gene37321.t1.exon2;Parent=MS.gene37321.t1
chr7.2 CDS 4245741 4245985 4245741 ID=cds.MS.gene37321.t1;Parent=MS.gene37321.t1
chr7.2 exon 4245164 4245410 4245164 ID=MS.gene37321.t1.exon3;Parent=MS.gene37321.t1
chr7.2 CDS 4245164 4245410 4245164 ID=cds.MS.gene37321.t1;Parent=MS.gene37321.t1
Gene Sequence

>MS.gene37321

ATGGAAGGAATAGAACACAGAACAGTGGAAGTAAATGGAATCAAAATGCATATTGCTGAAAAAGGAAAAGAAGGTCCTCTTGTCTTGTTCCTTCATGGCTTCCCCGAACTGTGGTATTCATGGCGCCATCAGATTGTAGCTCTCAGCTCCCTCGGCTACCGTGCTGTTGCTCCGGATCTCCGTGGTTATGGTGACACCGATGCTCCGTCTTCAGTTAGTAGCTACACAGGTTTTCATATAGTAGGTGACCTTATTGCACTTATAGATTTTCTGGGTGTTGATCAAGTATTTCTTGTGGCTCATGATTGGGGTGCCATCATTGGTTGGTATCTTTGTATGTTTCGCCCTGAAAGAATCAAAGCTTATGTTTGTCTCAGTGTTCCACTACTCCGTAGAAACCCCAAAATCAGGACCGTTGATGCCATGCATGCTGCTTATGGAGATGATTATTACATATGTAGATTTCAGGTTATTCTTTTTCTTTACTACCACTTTTCTACTTTTGTCTCTGTAGCCCCTAATTTACTTTAAGCAATCCCTAATATTTTATGACTCATAAAATATACAGGGTTAATTAAGTAAATGGTCCATCTAAATATTTAGAATTTTGTTTTTAGTCCCTATAAAATAAAATCACATTTTTTAGTCCCTATAAAATTTTTCATCAACATTTTTATTTCCTATAAAAATTTTCCATCAACATTTTTAGTCTTTGTCAAAAATATCCATCAACATTTTTGGTCCCTAAAATGCTTAAGGAAAATGTCACAGGGACTAAAAAGTGTGATTTTATTTTGTAGGGACTAAAAACAAAACTGTGAATATTTATAGGGACTAAAAACTTAATTATATAGATGCAGGAGAGAGTAATACTTAATAACTAAATTCAGGGATTACTCTTATGATTTTAGTTTGAGTGGTGTTTGATGTGGGCTATTGACATGATACTGATACGCCTGTTTGGATAGATTTATTTGAGAGGATTTACGGGTTGTGAGATTGTTTAATATAATTAAGGAGGTTGTTTTGAGATGCTTATTTTCATAAGCTCTTCAAATAGCATGTGAAAATAACTTAAAACTTATATAAAAATAATTTGACTTTATTTTATCTTTTGCTATAAGCACTTGATTAAGTTTCCTTAAAAAAAGCACTTGATTAAGGTTTTTTTGTTAAGAAGTCGATCTATCCCACCGAAATTGGCACAGGGAAAATAGAACCTGTCACCTTAAGAGAGATACTCCAGTCTCAGGACACCACCACCAGGCCATCCCAAGTGGATTTAACACTTGATTAACTTGTTTATTTAAGTAGAGTCTAAATCAAAAGAGGAAACCTTATAGTTGATCAGTTAATTCTAGAAGCAAGCATGACTCAACTTAATATAGAATGACATGTTGTGCATTTTGTTAGGGAGTAATATTGATTATTGAATACGTTAGGGTGAAGTTCTCTTATTTTGGGTCTGCATCAACTTTAGAATTGTATGACATCATAATGGTCATGAATGTAGAAGTTAATCTGTTTTCCTTTCTTTTAGCTACATATCATTCCTAAAGTATTACCCTACTCAGATTGAATCGCTCGTGAAGCTCCAATATAATGTTTTGAAACAGAGTTCTTTGTTTATCTAAAATGAAGTGGAAAGTTGCTGTAATGATAGATCTGAATAACATAATTGCTTTTGGTCCGCATCACAGGAACCAGGCAAAATGGAAGCTGAGATGGCTGAAGTTGGCACTGCATATGTGATGAAAAGTACCCTCACAACTCGGAAAACTGGTCCTCCAATATTTCCCAAGGGAGAGTTTGGAACTGGATTCAACTCGGATACTCCTGACACCTTACCCTCTTGGCTTACAGAAGAAGACCTTGCTTATTTTGTCTCCAAATTTGAGAAAACAGGCTTCACTGCAGCATTGAACTACTATAGAAACTTGAACTCGTAATCTTTTGATTCTTTGTGTTATCTCTGTTTGTTTTCCACAAATATATGTTGACAATTCCTTTTGGTAAAATGTTTTAACAACATGACAATAATCTATGCGGCATTAACATTTCAGTTTGAAGACGTGCCCGGTGTTTGATACGTGTTGATATCCGACACCGACACATGTTATATTCAATCACTTCCATTTTTAAAACTGTTATTGGTATCTACTTGTCAATGTCGCGTCCAATGTTTGTGTTTAGCGTTGTTTTCAATGTATGTGTTAGTGTTTCATAAATAGAGATCCCAATTCTAATGAAAGATGCATTATTACTTGTATTGTAGAAATTGGGAGCTGATGGCACCATGGAATGGGGTGAAAATCAAGGTGCCTGTGAAATTCATTACAGGTGATTTAGACAGTGTATACACCTCACTAAACATGAAGGAGTATATCCATGGTGGGGGATTCAAGGAAGATGTGCCCAATCTGGAAGAAGTGATTATCCAAAAAGGAGTGGCGCACTTCAACAATCAAGAAGCAGCAGAGGAAATAAGTAATCACATTTATGAATTCATCAAAAAGTTCTGA

Protein sequence

>MS.gene37321.t1

MEGIEHRTVEVNGIKMHIAEKGKEGPLVLFLHGFPELWYSWRHQIVALSSLGYRAVAPDLRGYGDTDAPSSVSSYTGFHIVGDLIALIDFLGVDQVFLVAHDWGAIIGWYLCMFRPERIKAYVCLSVPLLRRNPKIRTVDAMHAAYGDDYYICRFQEPGKMEAEMAEVGTAYVMKSTLTTRKTGPPIFPKGEFGTGFNSDTPDTLPSWLTEEDLAYFVSKFEKTGFTAALNYYRNLNSNWELMAPWNGVKIKVPVKFITGDLDSVYTSLNMKEYIHGGGFKEDVPNLEEVIIQKGVAHFNNQEAAEEISNHIYEFIKKF