Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057956.t1 | XP_024639103.1 | 93 | 357 | 25 | 0 | 7 | 363 | 3 | 359 | 3.40E-196 | 694.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057956.t1 | B9FSC8 | 75.4 | 358 | 82 | 1 | 11 | 362 | 6 | 363 | 6.6e-164 | 578.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057956.t1 | G7K3R3 | 92.7 | 357 | 26 | 0 | 7 | 363 | 3 | 359 | 1.2e-195 | 691.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057956 | MS.gene28210 | 0.897033 | 2.08E-76 | -1.69E-46 |
| MS.gene057956 | MS.gene37321 | 0.800143 | 1.65E-48 | -1.69E-46 |
| MS.gene057956 | MS.gene50903 | 0.914312 | 2.22E-84 | -1.69E-46 |
| MS.gene057956 | MS.gene97626 | 0.913645 | 4.84E-84 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057956.t1 | MTR_5g006670 | 92.717 | 357 | 26 | 0 | 7 | 363 | 3 | 359 | 0.0 | 695 |
| MS.gene057956.t1 | MTR_5g006710 | 90.358 | 363 | 35 | 0 | 1 | 363 | 1 | 363 | 0.0 | 690 |
| MS.gene057956.t1 | MTR_5g006780 | 85.714 | 371 | 45 | 3 | 1 | 363 | 1 | 371 | 0.0 | 652 |
| MS.gene057956.t1 | MTR_5g006800 | 83.198 | 369 | 56 | 1 | 1 | 363 | 1 | 369 | 0.0 | 641 |
| MS.gene057956.t1 | MTR_5g006750 | 80.593 | 371 | 64 | 2 | 1 | 363 | 1 | 371 | 0.0 | 624 |
| MS.gene057956.t1 | MTR_5g006740 | 81.267 | 363 | 62 | 1 | 7 | 363 | 3 | 365 | 0.0 | 622 |
| MS.gene057956.t1 | MTR_5g008040 | 78.533 | 368 | 73 | 1 | 1 | 362 | 3 | 370 | 0.0 | 613 |
| MS.gene057956.t1 | MTR_5g006740 | 77.135 | 363 | 60 | 3 | 7 | 363 | 3 | 348 | 0.0 | 575 |
| MS.gene057956.t1 | MTR_3g115600 | 69.863 | 365 | 106 | 2 | 1 | 363 | 1 | 363 | 0.0 | 541 |
| MS.gene057956.t1 | MTR_5g006720 | 72.000 | 375 | 61 | 3 | 6 | 363 | 5 | 352 | 0.0 | 540 |
| MS.gene057956.t1 | MTR_4g125470 | 54.054 | 370 | 151 | 3 | 12 | 362 | 19 | 388 | 3.04e-144 | 414 |
| MS.gene057956.t1 | MTR_5g006730 | 79.310 | 116 | 24 | 0 | 1 | 116 | 1 | 116 | 1.25e-63 | 199 |
| MS.gene057956.t1 | MTR_3g096570 | 80.282 | 71 | 14 | 0 | 169 | 239 | 8 | 78 | 4.50e-32 | 121 |
| MS.gene057956.t1 | MTR_3g096562 | 70.370 | 81 | 24 | 0 | 159 | 239 | 162 | 242 | 4.26e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057956.t1 | AT1G76690 | 73.442 | 369 | 92 | 1 | 1 | 363 | 3 | 371 | 0.0 | 580 |
| MS.gene057956.t1 | AT1G76680 | 72.900 | 369 | 94 | 2 | 1 | 363 | 1 | 369 | 0.0 | 578 |
| MS.gene057956.t1 | AT1G76680 | 68.274 | 394 | 94 | 3 | 1 | 363 | 1 | 394 | 0.0 | 565 |
| MS.gene057956.t1 | AT1G09400 | 70.370 | 324 | 96 | 0 | 18 | 341 | 1 | 324 | 0.0 | 506 |
| MS.gene057956.t1 | AT1G09400 | 71.591 | 264 | 75 | 0 | 78 | 341 | 2 | 265 | 1.86e-147 | 417 |
| MS.gene057956.t1 | AT2G06050 | 51.688 | 385 | 163 | 3 | 1 | 362 | 1 | 385 | 2.10e-141 | 407 |
| MS.gene057956.t1 | AT2G06050 | 51.688 | 385 | 163 | 3 | 1 | 362 | 1 | 385 | 2.10e-141 | 407 |
| MS.gene057956.t1 | AT2G06050 | 51.688 | 385 | 163 | 3 | 1 | 362 | 1 | 385 | 2.10e-141 | 407 |
| MS.gene057956.t1 | AT1G17990 | 70.930 | 258 | 72 | 2 | 5 | 260 | 2 | 258 | 1.01e-138 | 395 |
| MS.gene057956.t1 | AT1G18020 | 70.930 | 258 | 72 | 2 | 5 | 260 | 2 | 258 | 1.01e-138 | 395 |
| MS.gene057956.t1 | AT1G17990 | 67.829 | 258 | 72 | 3 | 5 | 260 | 2 | 250 | 6.33e-130 | 373 |
Find 88 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAATCTCTTTGGCAAATC+TGG | 0.201994 | 3.4:-15354105 | None:intergenic |
| AAATGCATTGGGACTTTATA+TGG | 0.214696 | 3.4:+15353858 | MS.gene057956:CDS |
| CTCCTCTTAACAAGTATAAT+AGG | 0.228308 | 3.4:+15354136 | MS.gene057956:CDS |
| AGGGCAGATCTTGTAGTTTA+TGG | 0.251067 | 3.4:+15354063 | MS.gene057956:CDS |
| CTGAAGTCATTGACAATATC+AGG | 0.283543 | 3.4:-15352994 | None:intergenic |
| TAGTCTAATTCCAACTTTAT+CGG | 0.320112 | 3.4:-15353794 | None:intergenic |
| ATCCAGACAGCCCAGGTATA+TGG | 0.329383 | 3.4:+15352378 | MS.gene057956:CDS |
| TATAAGAAGACCACCTTTAG+AGG | 0.341560 | 3.4:-15352318 | None:intergenic |
| GGCTTTCAATGGCACTTTCA+TGG | 0.346532 | 3.4:+15353990 | MS.gene057956:CDS |
| ATATAAAGTCCCAATGCATT+TGG | 0.354102 | 3.4:-15353856 | None:intergenic |
| GCATTAAGTGCAAATCTCTT+TGG | 0.366938 | 3.4:-15354114 | None:intergenic |
| CTCATTGGCACAAGGCTGTA+AGG | 0.367432 | 3.4:-15353964 | None:intergenic |
| TCCCTATTATACTTGTTAAG+AGG | 0.369675 | 3.4:-15354138 | None:intergenic |
| TCATCTGTCCCAAGCCTTCT+CGG | 0.370065 | 3.4:-15352967 | None:intergenic |
| CAATGGCACTTTCATGGTTG+CGG | 0.371044 | 3.4:+15353996 | MS.gene057956:CDS |
| GTCCATATACCTGGGCTGTC+TGG | 0.372045 | 3.4:-15352380 | None:intergenic |
| TCAATGCTATAGCTGAAAAC+AGG | 0.375838 | 3.4:+15354043 | MS.gene057956:CDS |
| TGATCCGGTTGTAGGTTATA+CGG | 0.380846 | 3.4:+15354176 | MS.gene057956:CDS |
| TACATTTCTGATCCGGTTGT+AGG | 0.387959 | 3.4:+15354168 | MS.gene057956:CDS |
| AATGGCACTTTCATGGTTGC+GGG | 0.393208 | 3.4:+15353997 | MS.gene057956:CDS |
| TTGAATTTGCCCATCTTGTA+AGG | 0.401075 | 3.4:-15352108 | None:intergenic |
| TTCTCGCCACCGAGAAGGCT+TGG | 0.405740 | 3.4:+15352958 | MS.gene057956:CDS |
| TCCTCTTAACAAGTATAATA+GGG | 0.406224 | 3.4:+15354137 | MS.gene057956:CDS |
| GAATCGTTGTCGATTTCCTT+TGG | 0.407517 | 3.4:+15353738 | MS.gene057956:CDS |
| AAAGAATATTGTACTTATTG+AGG | 0.409340 | 3.4:-15353888 | None:intergenic |
| CCATTGAAAGCCTTTCTCAT+TGG | 0.410004 | 3.4:-15353979 | None:intergenic |
| AGGACCTTTGAGAGTAATAG+AGG | 0.421466 | 3.4:-15352298 | None:intergenic |
| GCAAATTCAATCTCTCTCAT+AGG | 0.425449 | 3.4:+15352121 | MS.gene057956:CDS |
| GCATGAACAGCATCTACAAC+AGG | 0.426710 | 3.4:-15352428 | None:intergenic |
| AACATTCTACATTTCTGATC+CGG | 0.427062 | 3.4:+15354161 | MS.gene057956:CDS |
| CAGCCTTGTGCCAATGAGAA+AGG | 0.431994 | 3.4:+15353969 | MS.gene057956:CDS |
| GAAGCAGTTGTAAATGAGAT+AGG | 0.432088 | 3.4:+15353769 | MS.gene057956:CDS |
| CTTTCTGCATATTCAGCAAA+TGG | 0.438653 | 3.4:-15353820 | None:intergenic |
| GATATCGGTGCTTGTCCATT+CGG | 0.438814 | 3.4:-15352895 | None:intergenic |
| GACTCTAATCCAAATGCATT+GGG | 0.453689 | 3.4:+15353847 | MS.gene057956:CDS |
| TGCTCTTTAGTCCATATACC+TGG | 0.459561 | 3.4:-15352389 | None:intergenic |
| AAGAATATTGTACTTATTGA+GGG | 0.462924 | 3.4:-15353887 | None:intergenic |
| AATGACAGAACAGATGAATA+TGG | 0.470052 | 3.4:+15353703 | MS.gene057956:CDS |
| GAGATAGGAGCCGATAAAGT+TGG | 0.478784 | 3.4:+15353784 | MS.gene057956:CDS |
| GTCGGATACACCAGTAGCTT+CGG | 0.479603 | 3.4:-15352342 | None:intergenic |
| CTCACTAGAATAAGATCCTA+TGG | 0.486036 | 3.4:+15352251 | MS.gene057956:CDS |
| TCTTCTTACACCTTACAAGA+TGG | 0.486533 | 3.4:+15352098 | MS.gene057956:CDS |
| TCTCGCCACCGAGAAGGCTT+GGG | 0.486835 | 3.4:+15352959 | MS.gene057956:CDS |
| ATTGCTTGTGAGTGACTTGT+CGG | 0.493116 | 3.4:-15352923 | None:intergenic |
| CTTCTTATAGCCGAAGCTAC+TGG | 0.505350 | 3.4:+15352332 | MS.gene057956:CDS |
| AGACTCTAATCCAAATGCAT+TGG | 0.510548 | 3.4:+15353846 | MS.gene057956:CDS |
| TAAGGTGTAAGAAGAGGAAT+GGG | 0.514396 | 3.4:-15352090 | None:intergenic |
| TTGTCCTCTATTACTCTCAA+AGG | 0.525613 | 3.4:+15352294 | MS.gene057956:CDS |
| TCATTGGCACAAGGCTGTAA+GGG | 0.525679 | 3.4:-15353963 | None:intergenic |
| GCAAGAAATGCTATTGAAGC+TGG | 0.528089 | 3.4:+15353024 | MS.gene057956:CDS |
| GTAAGGTGTAAGAAGAGGAA+TGG | 0.528759 | 3.4:-15352091 | None:intergenic |
| TACTCTCAAAGGTCCTCTAA+AGG | 0.530036 | 3.4:+15352305 | MS.gene057956:CDS |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 3.4:-15353672 | None:intergenic |
| GACTTGTCGGTAGAAGATAT+CGG | 0.533594 | 3.4:-15352910 | None:intergenic |
| GTCGAAATCCATGGAGCTCA+TGG | 0.534699 | 3.4:+15353646 | MS.gene057956:CDS |
| TTTGATGGTGTCGAAATCCA+TGG | 0.539312 | 3.4:+15353637 | MS.gene057956:CDS |
| CTTCTTACACCTTACAAGAT+GGG | 0.542433 | 3.4:+15352099 | MS.gene057956:CDS |
| GTAGATGCTGTTCATGCTAA+AGG | 0.548123 | 3.4:+15352434 | MS.gene057956:CDS |
| TGGATACCCTTGAGCTGTGT+CGG | 0.553060 | 3.4:-15352360 | None:intergenic |
| CCAATGAGAAAGGCTTTCAA+TGG | 0.561406 | 3.4:+15353979 | MS.gene057956:CDS |
| AAGCCTTTCTCATTGGCACA+AGG | 0.563142 | 3.4:-15353972 | None:intergenic |
| TAGAGGACAACATGTGGTTG+AGG | 0.573654 | 3.4:-15352281 | None:intergenic |
| GGTGTATCCGACACAGCTCA+AGG | 0.574972 | 3.4:+15352353 | MS.gene057956:CDS |
| TAGTCCGTATAACCTACAAC+CGG | 0.576852 | 3.4:-15354180 | None:intergenic |
| CAATATTCTTTACTGTCACA+TGG | 0.576936 | 3.4:+15353900 | MS.gene057956:CDS |
| AGCTTCAATAGCATTTCTTG+CGG | 0.576970 | 3.4:-15353022 | None:intergenic |
| GCTCTTTAGTCCATATACCT+GGG | 0.578858 | 3.4:-15352388 | None:intergenic |
| CAAGGGTATCCAGACAGCCC+AGG | 0.584387 | 3.4:+15352371 | MS.gene057956:CDS |
| GGCACTTTCATGGTTGCGGG+AGG | 0.587792 | 3.4:+15354000 | MS.gene057956:CDS |
| GAAATCGACAACGATTCTCA+AGG | 0.593087 | 3.4:-15353732 | None:intergenic |
| GTAGGTAGCCATGAGCTCCA+TGG | 0.595976 | 3.4:-15353654 | None:intergenic |
| GGAGGCTATGACAGACAAGA+CGG | 0.604358 | 3.4:+15354018 | MS.gene057956:CDS |
| ACTGCTTCAACAACTTCCAA+AGG | 0.607160 | 3.4:-15353754 | None:intergenic |
| TAGGATCTTATTCTAGTGAG+TGG | 0.614903 | 3.4:-15352248 | None:intergenic |
| GAGGCTATGACAGACAAGAC+GGG | 0.616560 | 3.4:+15354019 | MS.gene057956:CDS |
| CAATGCTATAGCTGAAAACA+GGG | 0.617928 | 3.4:+15354044 | MS.gene057956:CDS |
| ATCTTGTAAGGTGTAAGAAG+AGG | 0.620167 | 3.4:-15352096 | None:intergenic |
| TGGTTGAGGAACATTGCCAT+AGG | 0.622865 | 3.4:-15352267 | None:intergenic |
| AAATCGACAACGATTCTCAA+GGG | 0.633730 | 3.4:-15353731 | None:intergenic |
| TTTGCTGAATATGCAGAAAG+CGG | 0.633878 | 3.4:+15353823 | MS.gene057956:CDS |
| TCTCAAAGGTCCTCTAAAGG+TGG | 0.638482 | 3.4:+15352308 | MS.gene057956:CDS |
| CTAAAGAGCAAGTTGAGGCG+TGG | 0.641191 | 3.4:+15352402 | MS.gene057956:CDS |
| GACAGAACAGATGAATATGG+TGG | 0.647355 | 3.4:+15353706 | MS.gene057956:CDS |
| GTGTATCCGACACAGCTCAA+GGG | 0.660265 | 3.4:+15352354 | MS.gene057956:CDS |
| TATTCTTTACTGTCACATGG+TGG | 0.684787 | 3.4:+15353903 | MS.gene057956:CDS |
| ATGGACTAAAGAGCAAGTTG+AGG | 0.687634 | 3.4:+15352397 | MS.gene057956:CDS |
| GAGTAATAGAGGACAACATG+TGG | 0.696474 | 3.4:-15352287 | None:intergenic |
| TCTGTCCCAAGCCTTCTCGG+TGG | 0.708391 | 3.4:-15352964 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAATAATACTAAAAAATAA+CGG | - | chr3.4:15352765-15352784 | None:intergenic | 10.0% |
| !! | AATAATCTTCAAATTATATG+AGG | - | chr3.4:15352528-15352547 | None:intergenic | 15.0% |
| !!! | AATTTGAAGATTATTTTAGT+TGG | + | chr3.4:15352533-15352552 | MS.gene057956:intron | 15.0% |
| !!! | ATTGAAATTGAAAGTATAAT+AGG | - | chr3.4:15352149-15352168 | None:intergenic | 15.0% |
| !! | AAAGAATATTGTACTTATTG+AGG | - | chr3.4:15353891-15353910 | None:intergenic | 20.0% |
| !! | AAGAATATTGTACTTATTGA+GGG | - | chr3.4:15353890-15353909 | None:intergenic | 20.0% |
| !! | AGTATTATTACTACTACTAA+GGG | + | chr3.4:15352774-15352793 | MS.gene057956:intron | 20.0% |
| !! | ATACTTTCAATTTCAATGTT+AGG | + | chr3.4:15352152-15352171 | MS.gene057956:intron | 20.0% |
| !! | ATAGCTCACTATATTTATTT+AGG | + | chr3.4:15353402-15353421 | MS.gene057956:intron | 20.0% |
| !! | TAGTATTATTACTACTACTA+AGG | + | chr3.4:15352773-15352792 | MS.gene057956:intron | 20.0% |
| !!! | ATACTAAAAAATAACGGATT+TGG | - | chr3.4:15352759-15352778 | None:intergenic | 20.0% |
| !!! | TACTAAAAAATAACGGATTT+GGG | - | chr3.4:15352758-15352777 | None:intergenic | 20.0% |
| ! | AAAACCTGTTGAGAATAAAA+TGG | - | chr3.4:15352872-15352891 | None:intergenic | 25.0% |
| ! | CAAAACTATCCAATCAATAT+TGG | - | chr3.4:15352691-15352710 | None:intergenic | 25.0% |
| ! | GTATTATTACTACTACTAAG+GGG | + | chr3.4:15352775-15352794 | MS.gene057956:intron | 25.0% |
| ! | TAGTCTAATTCCAACTTTAT+CGG | - | chr3.4:15353797-15353816 | None:intergenic | 25.0% |
| ! | TCCTCTTAACAAGTATAATA+GGG | + | chr3.4:15354137-15354156 | MS.gene057956:CDS | 25.0% |
| !! | TTGTTATTGTTGGATTTAGA+TGG | + | chr3.4:15352559-15352578 | MS.gene057956:intron | 25.0% |
| !!! | AGGACTATTTGTTGATTTAA+AGG | + | chr3.4:15353558-15353577 | MS.gene057956:intron | 25.0% |
| !!! | GGACTATTTGTTGATTTAAA+GGG | + | chr3.4:15353559-15353578 | MS.gene057956:intron | 25.0% |
| !!! | TACTGATATTTTTCAGAAAC+AGG | + | chr3.4:15353106-15353125 | MS.gene057956:intron | 25.0% |
| !!! | TTGAAGATTATTTTAGTTGG+AGG | + | chr3.4:15352536-15352555 | MS.gene057956:intron | 25.0% |
| AAATGAATCACAATGAGTTG+AGG | + | chr3.4:15353298-15353317 | MS.gene057956:intron | 30.0% | |
| AAATGCATTGGGACTTTATA+TGG | + | chr3.4:15353858-15353877 | MS.gene057956:CDS | 30.0% | |
| AAATTCTTGAGCTTGAAATC+TGG | + | chr3.4:15352660-15352679 | MS.gene057956:intron | 30.0% | |
| AACATTCTACATTTCTGATC+CGG | + | chr3.4:15354161-15354180 | MS.gene057956:CDS | 30.0% | |
| AATGACAGAACAGATGAATA+TGG | + | chr3.4:15353703-15353722 | MS.gene057956:CDS | 30.0% | |
| ACTATCCAATCAATATTGGA+CGG | - | chr3.4:15352687-15352706 | None:intergenic | 30.0% | |
| ATATAAAGTCCCAATGCATT+TGG | - | chr3.4:15353859-15353878 | None:intergenic | 30.0% | |
| CAATATTCTTTACTGTCACA+TGG | + | chr3.4:15353900-15353919 | MS.gene057956:CDS | 30.0% | |
| CACATAATTCGTGTAATCAA+GGG | + | chr3.4:15353137-15353156 | MS.gene057956:intron | 30.0% | |
| CTCCTCTTAACAAGTATAAT+AGG | + | chr3.4:15354136-15354155 | MS.gene057956:CDS | 30.0% | |
| CTTTCATGAATTGTTCAAGT+AGG | - | chr3.4:15353675-15353694 | None:intergenic | 30.0% | |
| GAAACTTGGTAGAAGAAATT+AGG | + | chr3.4:15353359-15353378 | MS.gene057956:intron | 30.0% | |
| TATTGAAGCTGGTAAATTTG+TGG | + | chr3.4:15353035-15353054 | MS.gene057956:intron | 30.0% | |
| TCACATAATTCGTGTAATCA+AGG | + | chr3.4:15353136-15353155 | MS.gene057956:intron | 30.0% | |
| TTACACGAATTATGTGACTA+TGG | - | chr3.4:15353133-15353152 | None:intergenic | 30.0% | |
| ! | CTACATTCTTTTGTCAGATT+TGG | + | chr3.4:15352459-15352478 | MS.gene057956:CDS | 30.0% |
| ! | GATTGAAGCACATTTCATTT+TGG | - | chr3.4:15353077-15353096 | None:intergenic | 30.0% |
| ! | GTTGGAAGATTTTCAAATTC+AGG | + | chr3.4:15352485-15352504 | MS.gene057956:CDS | 30.0% |
| ! | TCCCTATTATACTTGTTAAG+AGG | - | chr3.4:15354141-15354160 | None:intergenic | 30.0% |
| !! | TCAGAAGCTGATTTTATTCT+TGG | - | chr3.4:15353931-15353950 | None:intergenic | 30.0% |
| AAATCGACAACGATTCTCAA+GGG | - | chr3.4:15353734-15353753 | None:intergenic | 35.0% | |
| AGAAGAACATGAACAAAGAG+TGG | + | chr3.4:15353329-15353348 | MS.gene057956:intron | 35.0% | |
| AGAAGAATTCGGTACGTATA+GGG | - | chr3.4:15353470-15353489 | None:intergenic | 35.0% | |
| AGACTCTAATCCAAATGCAT+TGG | + | chr3.4:15353846-15353865 | MS.gene057956:CDS | 35.0% | |
| AGCTTCAATAGCATTTCTTG+CGG | - | chr3.4:15353025-15353044 | None:intergenic | 35.0% | |
| ATCTTGTAAGGTGTAAGAAG+AGG | - | chr3.4:15352099-15352118 | None:intergenic | 35.0% | |
| ATTGTTGGATTTAGATGGTG+TGG | + | chr3.4:15352564-15352583 | MS.gene057956:intron | 35.0% | |
| CAATGCTATAGCTGAAAACA+GGG | + | chr3.4:15354044-15354063 | MS.gene057956:CDS | 35.0% | |
| CTCAATTTGATGCAAATTGC+AGG | + | chr3.4:15353613-15353632 | MS.gene057956:intron | 35.0% | |
| CTCACTAGAATAAGATCCTA+TGG | + | chr3.4:15352251-15352270 | MS.gene057956:CDS | 35.0% | |
| CTGAAGTCATTGACAATATC+AGG | - | chr3.4:15352997-15353016 | None:intergenic | 35.0% | |
| CTTCTTACACCTTACAAGAT+GGG | + | chr3.4:15352099-15352118 | MS.gene057956:CDS | 35.0% | |
| CTTTCTGCATATTCAGCAAA+TGG | - | chr3.4:15353823-15353842 | None:intergenic | 35.0% | |
| GAAGCAGTTGTAAATGAGAT+AGG | + | chr3.4:15353769-15353788 | MS.gene057956:CDS | 35.0% | |
| GACTCTAATCCAAATGCATT+GGG | + | chr3.4:15353847-15353866 | MS.gene057956:CDS | 35.0% | |
| GCAAATTCAATCTCTCTCAT+AGG | + | chr3.4:15352121-15352140 | MS.gene057956:CDS | 35.0% | |
| GCATTAAGTGCAAATCTCTT+TGG | - | chr3.4:15354117-15354136 | None:intergenic | 35.0% | |
| GGAGGTTAATTAGCAAAACA+AGG | - | chr3.4:15352206-15352225 | None:intergenic | 35.0% | |
| TAAGGTGTAAGAAGAGGAAT+GGG | - | chr3.4:15352093-15352112 | None:intergenic | 35.0% | |
| TAGGATCTTATTCTAGTGAG+TGG | - | chr3.4:15352251-15352270 | None:intergenic | 35.0% | |
| TATAAGAAGACCACCTTTAG+AGG | - | chr3.4:15352321-15352340 | None:intergenic | 35.0% | |
| TATTCTTTACTGTCACATGG+TGG | + | chr3.4:15353903-15353922 | MS.gene057956:CDS | 35.0% | |
| TCAATGCTATAGCTGAAAAC+AGG | + | chr3.4:15354043-15354062 | MS.gene057956:CDS | 35.0% | |
| TCTTCTTACACCTTACAAGA+TGG | + | chr3.4:15352098-15352117 | MS.gene057956:CDS | 35.0% | |
| TGCGAATTATGACTATGAAC+AGG | + | chr3.4:15353538-15353557 | MS.gene057956:intron | 35.0% | |
| TTGAATTTGCCCATCTTGTA+AGG | - | chr3.4:15352111-15352130 | None:intergenic | 35.0% | |
| TTGTCCTCTATTACTCTCAA+AGG | + | chr3.4:15352294-15352313 | MS.gene057956:CDS | 35.0% | |
| TTTGCTGAATATGCAGAAAG+CGG | + | chr3.4:15353823-15353842 | MS.gene057956:CDS | 35.0% | |
| ! | AAAACAACTCTGAAAATGGG+AGG | - | chr3.4:15352224-15352243 | None:intergenic | 35.0% |
| ! | GCCAAAACAACTCTGAAAAT+GGG | - | chr3.4:15352227-15352246 | None:intergenic | 35.0% |
| ! | GTGTCCATTTTATTCTCAAC+AGG | + | chr3.4:15352865-15352884 | MS.gene057956:intron | 35.0% |
| ! | TAGTTGGAGGTTGTTATTGT+TGG | + | chr3.4:15352549-15352568 | MS.gene057956:intron | 35.0% |
| ! | TCCCATTTTCAGAGTTGTTT+TGG | + | chr3.4:15352223-15352242 | MS.gene057956:intron | 35.0% |
| ! | TGCCAAAACAACTCTGAAAA+TGG | - | chr3.4:15352228-15352247 | None:intergenic | 35.0% |
| ! | TTTTGTCAGATTTGGCATGT+TGG | + | chr3.4:15352467-15352486 | MS.gene057956:CDS | 35.0% |
| !! | ATGCAAATTGCAGGTTTTGA+TGG | + | chr3.4:15353622-15353641 | MS.gene057956:intron | 35.0% |
| !!! | CCTTTTTTTCAACCAATCAG+CGG | - | chr3.4:15353256-15353275 | None:intergenic | 35.0% |
| ACTGCTTCAACAACTTCCAA+AGG | - | chr3.4:15353757-15353776 | None:intergenic | 40.0% | |
| AGGGCAGATCTTGTAGTTTA+TGG | + | chr3.4:15354063-15354082 | MS.gene057956:CDS | 40.0% | |
| ATCAAGGGAGAATTGCGAAT+TGG | + | chr3.4:15353152-15353171 | MS.gene057956:intron | 40.0% | |
| CCAATGAGAAAGGCTTTCAA+TGG | + | chr3.4:15353979-15353998 | MS.gene057956:CDS | 40.0% | |
| CCATTGAAAGCCTTTCTCAT+TGG | - | chr3.4:15353982-15354001 | None:intergenic | 40.0% | |
| GAAATCGACAACGATTCTCA+AGG | - | chr3.4:15353735-15353754 | None:intergenic | 40.0% | |
| GAAGAATTCGGTACGTATAG+GGG | - | chr3.4:15353469-15353488 | None:intergenic | 40.0% | |
| GACAGAACAGATGAATATGG+TGG | + | chr3.4:15353706-15353725 | MS.gene057956:CDS | 40.0% | |
| GACTTGTCGGTAGAAGATAT+CGG | - | chr3.4:15352913-15352932 | None:intergenic | 40.0% | |
| GAGAAGAATTCGGTACGTAT+AGG | - | chr3.4:15353471-15353490 | None:intergenic | 40.0% | |
| GAGTAATAGAGGACAACATG+TGG | - | chr3.4:15352290-15352309 | None:intergenic | 40.0% | |
| GCAAATCTCTTTGGCAAATC+TGG | - | chr3.4:15354108-15354127 | None:intergenic | 40.0% | |
| GCAAGAAATGCTATTGAAGC+TGG | + | chr3.4:15353024-15353043 | MS.gene057956:CDS | 40.0% | |
| GCTCTTTAGTCCATATACCT+GGG | - | chr3.4:15352391-15352410 | None:intergenic | 40.0% | |
| GTAAGGTGTAAGAAGAGGAA+TGG | - | chr3.4:15352094-15352113 | None:intergenic | 40.0% | |
| GTAGATGCTGTTCATGCTAA+AGG | + | chr3.4:15352434-15352453 | MS.gene057956:CDS | 40.0% | |
| TACATTTCTGATCCGGTTGT+AGG | + | chr3.4:15354168-15354187 | MS.gene057956:CDS | 40.0% | |
| TACTCTCAAAGGTCCTCTAA+AGG | + | chr3.4:15352305-15352324 | MS.gene057956:CDS | 40.0% | |
| TAGTCCGTATAACCTACAAC+CGG | - | chr3.4:15354183-15354202 | None:intergenic | 40.0% | |
| TCATAATTCGCAGTTCGTTC+CGG | - | chr3.4:15353530-15353549 | None:intergenic | 40.0% | |
| TGATCCGGTTGTAGGTTATA+CGG | + | chr3.4:15354176-15354195 | MS.gene057956:CDS | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | chr3.4:15352392-15352411 | None:intergenic | 40.0% | |
| ! | AGGACCTTTGAGAGTAATAG+AGG | - | chr3.4:15352301-15352320 | None:intergenic | 40.0% |
| ! | ATGGACTAAAGAGCAAGTTG+AGG | + | chr3.4:15352397-15352416 | MS.gene057956:CDS | 40.0% |
| ! | ATTGCTTGTGAGTGACTTGT+CGG | - | chr3.4:15352926-15352945 | None:intergenic | 40.0% |
| ! | CCGCTGATTGGTTGAAAAAA+AGG | + | chr3.4:15353253-15353272 | MS.gene057956:intron | 40.0% |
| !! | GAATCGTTGTCGATTTCCTT+TGG | + | chr3.4:15353738-15353757 | MS.gene057956:CDS | 40.0% |
| !! | TTTGATGGTGTCGAAATCCA+TGG | + | chr3.4:15353637-15353656 | MS.gene057956:CDS | 40.0% |
| AAAAATTCTCGCCACCGAGA+AGG | + | chr3.4:15352953-15352972 | MS.gene057956:CDS | 45.0% | |
| AAAGCATGGTTACCGCTGAT+TGG | + | chr3.4:15353241-15353260 | MS.gene057956:intron | 45.0% | |
| AAGCCTTTCTCATTGGCACA+AGG | - | chr3.4:15353975-15353994 | None:intergenic | 45.0% | |
| AATCAGCGGTAACCATGCTT+TGG | - | chr3.4:15353242-15353261 | None:intergenic | 45.0% | |
| AATGGCACTTTCATGGTTGC+GGG | + | chr3.4:15353997-15354016 | MS.gene057956:CDS | 45.0% | |
| AGAGTGGAGAGTGAGAAACT+TGG | + | chr3.4:15353345-15353364 | MS.gene057956:intron | 45.0% | |
| CAATGGCACTTTCATGGTTG+CGG | + | chr3.4:15353996-15354015 | MS.gene057956:CDS | 45.0% | |
| CTAGACAACCGATCTTGATG+TGG | - | chr3.4:15352609-15352628 | None:intergenic | 45.0% | |
| CTGGACCGTCCAATATTGAT+TGG | + | chr3.4:15352679-15352698 | MS.gene057956:intron | 45.0% | |
| CTTCTTATAGCCGAAGCTAC+TGG | + | chr3.4:15352332-15352351 | MS.gene057956:CDS | 45.0% | |
| GAGATAGGAGCCGATAAAGT+TGG | + | chr3.4:15353784-15353803 | MS.gene057956:CDS | 45.0% | |
| GCAGTCAACCACATCAAGAT+CGG | + | chr3.4:15352598-15352617 | MS.gene057956:intron | 45.0% | |
| GCATGAACAGCATCTACAAC+AGG | - | chr3.4:15352431-15352450 | None:intergenic | 45.0% | |
| GGCTTTCAATGGCACTTTCA+TGG | + | chr3.4:15353990-15354009 | MS.gene057956:CDS | 45.0% | |
| TAACCATGCTTTGGTACGCT+TGG | - | chr3.4:15353233-15353252 | None:intergenic | 45.0% | |
| TACGCGACAGGAGAAGAATT+CGG | - | chr3.4:15353481-15353500 | None:intergenic | 45.0% | |
| TAGAGGACAACATGTGGTTG+AGG | - | chr3.4:15352284-15352303 | None:intergenic | 45.0% | |
| TCATTGGCACAAGGCTGTAA+GGG | - | chr3.4:15353966-15353985 | None:intergenic | 45.0% | |
| TGGTTGAGGAACATTGCCAT+AGG | - | chr3.4:15352270-15352289 | None:intergenic | 45.0% | |
| ! | AGTACCGAATTCGGGTACTT+CGG | + | chr3.4:15353181-15353200 | MS.gene057956:intron | 45.0% |
| ! | CGTATAGGGGTATACAGCTT+CGG | - | chr3.4:15353456-15353475 | None:intergenic | 45.0% |
| ! | GATATCGGTGCTTGTCCATT+CGG | - | chr3.4:15352898-15352917 | None:intergenic | 45.0% |
| ! | TCAACAGGTTTTCAGCCGAA+TGG | + | chr3.4:15352880-15352899 | MS.gene057956:intron | 45.0% |
| ! | TCTCAAAGGTCCTCTAAAGG+TGG | + | chr3.4:15352308-15352327 | MS.gene057956:CDS | 45.0% |
| !! | TGGTACGTGAGTACCGAATT+CGG | + | chr3.4:15353172-15353191 | MS.gene057956:intron | 45.0% |
| ATCCAGACAGCCCAGGTATA+TGG | + | chr3.4:15352378-15352397 | MS.gene057956:CDS | 50.0% | |
| ATTCGGGTACTTCGGCGTAT+TGG | + | chr3.4:15353189-15353208 | MS.gene057956:intron | 50.0% | |
| CTCATTGGCACAAGGCTGTA+AGG | - | chr3.4:15353967-15353986 | None:intergenic | 50.0% | |
| GAACCAAGCGTACCAAAGCA+TGG | + | chr3.4:15353227-15353246 | MS.gene057956:intron | 50.0% | |
| GAGGCTATGACAGACAAGAC+GGG | + | chr3.4:15354019-15354038 | MS.gene057956:CDS | 50.0% | |
| GGAGGCTATGACAGACAAGA+CGG | + | chr3.4:15354018-15354037 | MS.gene057956:CDS | 50.0% | |
| GTCGAAATCCATGGAGCTCA+TGG | + | chr3.4:15353646-15353665 | MS.gene057956:CDS | 50.0% | |
| GTCGGATACACCAGTAGCTT+CGG | - | chr3.4:15352345-15352364 | None:intergenic | 50.0% | |
| GTGTATCCGACACAGCTCAA+GGG | + | chr3.4:15352354-15352373 | MS.gene057956:CDS | 50.0% | |
| TATACAGCTTCGGTACGCTC+TGG | - | chr3.4:15353446-15353465 | None:intergenic | 50.0% | |
| TCATCTGTCCCAAGCCTTCT+CGG | - | chr3.4:15352970-15352989 | None:intergenic | 50.0% | |
| TGGATACCCTTGAGCTGTGT+CGG | - | chr3.4:15352363-15352382 | None:intergenic | 50.0% | |
| ! | CAGCCTTGTGCCAATGAGAA+AGG | + | chr3.4:15353969-15353988 | MS.gene057956:CDS | 50.0% |
| ! | CTAAAGAGCAAGTTGAGGCG+TGG | + | chr3.4:15352402-15352421 | MS.gene057956:CDS | 50.0% |
| ! | TACGCCGAAGTACCCGAATT+CGG | - | chr3.4:15353188-15353207 | None:intergenic | 50.0% |
| !! | GGTACGTGAGTACCGAATTC+GGG | + | chr3.4:15353173-15353192 | MS.gene057956:intron | 50.0% |
| GGTGTATCCGACACAGCTCA+AGG | + | chr3.4:15352353-15352372 | MS.gene057956:CDS | 55.0% | |
| GTAGGTAGCCATGAGCTCCA+TGG | - | chr3.4:15353657-15353676 | None:intergenic | 55.0% | |
| GTCCATATACCTGGGCTGTC+TGG | - | chr3.4:15352383-15352402 | None:intergenic | 55.0% | |
| ! | CTTTGGTACGCTTGGTTCGC+TGG | - | chr3.4:15353225-15353244 | None:intergenic | 55.0% |
| GGCACTTTCATGGTTGCGGG+AGG | + | chr3.4:15354000-15354019 | MS.gene057956:CDS | 60.0% | |
| GTTCGTTCCGGTACGCGGTA+CGG | - | chr3.4:15353518-15353537 | None:intergenic | 60.0% | |
| TCGCAGTTCGTTCCGGTACG+CGG | - | chr3.4:15353523-15353542 | None:intergenic | 60.0% | |
| TCTCGCCACCGAGAAGGCTT+GGG | + | chr3.4:15352959-15352978 | MS.gene057956:CDS | 60.0% | |
| TCTGTCCCAAGCCTTCTCGG+TGG | - | chr3.4:15352967-15352986 | None:intergenic | 60.0% | |
| TTCGTTCCGGTACGCGGTAC+GGG | - | chr3.4:15353517-15353536 | None:intergenic | 60.0% | |
| TTCTCGCCACCGAGAAGGCT+TGG | + | chr3.4:15352958-15352977 | MS.gene057956:CDS | 60.0% | |
| !! | CAAGGGTATCCAGACAGCCC+AGG | + | chr3.4:15352371-15352390 | MS.gene057956:CDS | 60.0% |
| TCCGGTACGCGGTACGGGTA+CGG | - | chr3.4:15353512-15353531 | None:intergenic | 65.0% | |
| ACGGGTTCGCGGTACGCGAC+AGG | - | chr3.4:15353493-15353512 | None:intergenic | 70.0% | |
| CCCGTACCCGTACCGCGTAC+CGG | + | chr3.4:15353508-15353527 | MS.gene057956:intron | 70.0% | |
| CCGGTACGCGGTACGGGTAC+GGG | - | chr3.4:15353511-15353530 | None:intergenic | 70.0% | |
| GCGGTACGGGTACGGGTTCG+CGG | - | chr3.4:15353504-15353523 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 15352066 | 15354218 | 15352066 | ID=MS.gene057956 |
| chr3.4 | mRNA | 15352066 | 15354218 | 15352066 | ID=MS.gene057956.t1;Parent=MS.gene057956 |
| chr3.4 | exon | 15352066 | 15352142 | 15352066 | ID=MS.gene057956.t1.exon1;Parent=MS.gene057956.t1 |
| chr3.4 | CDS | 15352066 | 15352142 | 15352066 | ID=cds.MS.gene057956.t1;Parent=MS.gene057956.t1 |
| chr3.4 | exon | 15352235 | 15352506 | 15352235 | ID=MS.gene057956.t1.exon2;Parent=MS.gene057956.t1 |
| chr3.4 | CDS | 15352235 | 15352506 | 15352235 | ID=cds.MS.gene057956.t1;Parent=MS.gene057956.t1 |
| chr3.4 | exon | 15352887 | 15353045 | 15352887 | ID=MS.gene057956.t1.exon3;Parent=MS.gene057956.t1 |
| chr3.4 | CDS | 15352887 | 15353045 | 15352887 | ID=cds.MS.gene057956.t1;Parent=MS.gene057956.t1 |
| chr3.4 | exon | 15353635 | 15354218 | 15353635 | ID=MS.gene057956.t1.exon4;Parent=MS.gene057956.t1 |
| chr3.4 | CDS | 15353635 | 15354218 | 15353635 | ID=cds.MS.gene057956.t1;Parent=MS.gene057956.t1 |
| Gene Sequence |
| Protein sequence |
