AlfalfaGEDB | MS.gene43039

M. sativa cultivar XinJiangDaYe / MS.gene43039

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43039.t1	XP_024633300.1	95.9	145	6	0	1	145	1	145	1.60E-64	255.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43039.t1	Q9M280	48.1	79	33	2	73	145	38	114	1.5e-10	67.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43039.t1	G7ITT2	94.3	141	8	0	1	141	1	141	3.5e-61	243.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene43039	0.801645	8.17E-49	-1.69E-46
MS.gene049171	MS.gene43039	0.801508	8.71E-49	-1.69E-46
MS.gene04932	MS.gene43039	-0.807913	4.01E-50	-1.69E-46
MS.gene049609	MS.gene43039	0.801897	7.25E-49	-1.69E-46
MS.gene049633	MS.gene43039	0.82399	1.03E-53	-1.69E-46
MS.gene049805	MS.gene43039	0.82082	5.61E-53	-1.69E-46
MS.gene050060	MS.gene43039	0.815347	9.69E-52	-1.69E-46
MS.gene050444	MS.gene43039	0.846349	2.30E-59	-1.69E-46
MS.gene050809	MS.gene43039	-0.821506	3.89E-53	-1.69E-46
MS.gene05080	MS.gene43039	0.821547	3.81E-53	-1.69E-46
MS.gene05081	MS.gene43039	0.829372	5.34E-55	-1.69E-46
MS.gene051838	MS.gene43039	0.83294	7.09E-56	-1.69E-46
MS.gene051874	MS.gene43039	0.837944	3.85E-57	-1.69E-46
MS.gene052469	MS.gene43039	0.82968	4.50E-55	-1.69E-46
MS.gene052870	MS.gene43039	0.835274	1.85E-56	-1.69E-46
MS.gene052872	MS.gene43039	0.841431	4.77E-58	-1.69E-46
MS.gene053449	MS.gene43039	0.827271	1.72E-54	-1.69E-46
MS.gene053824	MS.gene43039	0.841188	5.53E-58	-1.69E-46
MS.gene053912	MS.gene43039	0.834763	2.48E-56	-1.69E-46
MS.gene053916	MS.gene43039	0.84346	1.38E-58	-1.69E-46
MS.gene054884	MS.gene43039	-0.837044	6.56E-57	-1.69E-46
MS.gene05494	MS.gene43039	0.836924	7.04E-57	-1.69E-46
MS.gene055206	MS.gene43039	0.82643	2.73E-54	-1.69E-46
MS.gene055539	MS.gene43039	0.80453	2.07E-49	-1.69E-46
MS.gene055941	MS.gene43039	0.817014	4.11E-52	-1.69E-46
MS.gene056387	MS.gene43039	0.80682	6.83E-50	-1.69E-46
MS.gene056511	MS.gene43039	0.802402	5.71E-49	-1.69E-46
MS.gene056697	MS.gene43039	-0.815744	7.90E-52	-1.69E-46
MS.gene057076	MS.gene43039	0.834776	2.46E-56	-1.69E-46
MS.gene057856	MS.gene43039	0.812371	4.38E-51	-1.69E-46
MS.gene057857	MS.gene43039	0.811867	5.65E-51	-1.69E-46
MS.gene058338	MS.gene43039	0.818658	1.75E-52	-1.69E-46
MS.gene058838	MS.gene43039	0.837181	6.05E-57	-1.69E-46
MS.gene059023	MS.gene43039	0.814132	1.80E-51	-1.69E-46
MS.gene05934	MS.gene43039	0.803715	3.05E-49	-1.69E-46
MS.gene059717	MS.gene43039	0.807196	5.69E-50	-1.69E-46
MS.gene060762	MS.gene43039	0.809885	1.52E-50	-1.69E-46
MS.gene060818	MS.gene43039	0.819073	1.41E-52	-1.69E-46
MS.gene060835	MS.gene43039	0.812476	4.16E-51	-1.69E-46
MS.gene060981	MS.gene43039	0.843344	1.48E-58	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43039.t1	MTR_2g086480	93.007	143	10	0	1	143	1	143	2.97e-89	262
MS.gene43039.t1	MTR_1g059990	51.613	62	29	1	71	132	49	109	9.97e-15	66.2
MS.gene43039.t1	MTR_7g104540	42.391	92	50	2	53	144	82	170	3.44e-14	66.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene43039.t1	AT3G44450	48.101	79	33	2	73	145	38	114	1.00e-18	76.6
MS.gene43039.t1	AT3G52740	46.479	71	36	1	74	144	65	133	1.06e-16	72.0

Find 33 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCTTTACTCTCTTCCTCTT+TGG	0.196605	2.4:+13772183	None:intergenic
ATTTACGTACATCAGCAATA+AGG	0.310452	2.4:+13771969	None:intergenic
AGGTTAAAGTACCTGAAAAC+TGG	0.340594	2.4:-13772087	MS.gene43039:CDS
ATAATAATGAAGTTGGAATA+TGG	0.362191	2.4:+13772290	None:intergenic
AAATCAAGGTCACAAAGATT+AGG	0.365491	2.4:-13771950	MS.gene43039:CDS
TGCTAGGGTAGAGGAAATTA+CGG	0.392659	2.4:-13772152	MS.gene43039:CDS
AATCAAGGTCACAAAGATTA+GGG	0.392972	2.4:-13771949	MS.gene43039:CDS
GAGGCATAGGGAAGAGATGA+AGG	0.397356	2.4:-13772113	MS.gene43039:CDS
TGAAGGGATAATAATGAAGT+TGG	0.401976	2.4:+13772283	None:intergenic
TTTACGTACATCAGCAATAA+GGG	0.413998	2.4:+13771970	None:intergenic
AGGAACAAAAGCTGAAAGAA+TGG	0.465707	2.4:-13772060	MS.gene43039:CDS
GCTAGGGTAGAGGAAATTAC+GGG	0.480315	2.4:-13772151	MS.gene43039:CDS
GGAACAAAAGCTGAAAGAAT+GGG	0.483468	2.4:-13772059	MS.gene43039:CDS
AAGTTGGAATATGGCAAGTA+GGG	0.487487	2.4:+13772299	None:intergenic
GAAGTTGGAATATGGCAAGT+AGG	0.507037	2.4:+13772298	None:intergenic
ATAAATTAAGAAACTAGGTA+TGG	0.512293	2.4:+13771924	None:intergenic
GTAAAGAGAATGGTACTGCT+AGG	0.520978	2.4:-13772168	MS.gene43039:CDS
GAATGGTACTGCTAGGGTAG+AGG	0.528884	2.4:-13772161	MS.gene43039:CDS
GAGGAAGAGAGTAAAGAGAA+TGG	0.530342	2.4:-13772178	MS.gene43039:CDS
GTGAGAGGTTGAAGAGGCAT+AGG	0.534191	2.4:-13772126	MS.gene43039:CDS
TAAAGAGAATGGTACTGCTA+GGG	0.542678	2.4:-13772167	MS.gene43039:CDS
TTGCTGATGTACGTAAATCA+AGG	0.545508	2.4:-13771964	MS.gene43039:CDS
AGGAAATTACGGGGCGTGAG+AGG	0.563528	2.4:-13772141	MS.gene43039:CDS
TAGGGAAGAGATGAAGGGAA+AGG	0.571304	2.4:-13772107	MS.gene43039:CDS
GGTTAAAGTACCTGAAAACT+GGG	0.585046	2.4:-13772086	MS.gene43039:CDS
AGGCATAGGGAAGAGATGAA+GGG	0.595639	2.4:-13772112	MS.gene43039:CDS
TGAGAGGTTGAAGAGGCATA+GGG	0.598492	2.4:-13772125	MS.gene43039:CDS
TGATGATGAAAAGGCCAAAG+AGG	0.600501	2.4:-13772197	MS.gene43039:CDS
AGTACCTGAAAACTGGGAGA+AGG	0.624441	2.4:-13772080	MS.gene43039:CDS
CGGGGCGTGAGAGGTTGAAG+AGG	0.628226	2.4:-13772132	MS.gene43039:CDS
GCATTAACAATCAATGCATG+AGG	0.666520	2.4:+13772001	None:intergenic
TGACTCATAACATCTCAACA+TGG	0.722472	2.4:-13772333	MS.gene43039:CDS
CTAGGGTAGAGGAAATTACG+GGG	0.760541	2.4:-13772150	MS.gene43039:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAATAATGAAGTTGGAATA+TGG	+	chr2.4:13772002-13772021	None:intergenic	20.0%
!!	CTTGTAATCATTTTGTTGAA+GGG	+	chr2.4:13772025-13772044	None:intergenic	25.0%
	AAATCAAGGTCACAAAGATT+AGG	-	chr2.4:13772339-13772358	MS.gene43039:CDS	30.0%
	AATCAAGGTCACAAAGATTA+GGG	-	chr2.4:13772340-13772359	MS.gene43039:CDS	30.0%
	ATTTACGTACATCAGCAATA+AGG	+	chr2.4:13772323-13772342	None:intergenic	30.0%
	TGAAGGGATAATAATGAAGT+TGG	+	chr2.4:13772009-13772028	None:intergenic	30.0%
	TTTACGTACATCAGCAATAA+GGG	+	chr2.4:13772322-13772341	None:intergenic	30.0%
!	GCTTGTAATCATTTTGTTGA+AGG	+	chr2.4:13772026-13772045	None:intergenic	30.0%
!	TCATCATAGCTTTTCGTATT+TGG	+	chr2.4:13772063-13772082	None:intergenic	30.0%
!!	GATTGATGATGATGATGAAA+AGG	-	chr2.4:13772083-13772102	MS.gene43039:CDS	30.0%
	AAGTTGGAATATGGCAAGTA+GGG	+	chr2.4:13771993-13772012	None:intergenic	35.0%
	AGGAACAAAAGCTGAAAGAA+TGG	-	chr2.4:13772229-13772248	MS.gene43039:CDS	35.0%
	GCATTAACAATCAATGCATG+AGG	+	chr2.4:13772291-13772310	None:intergenic	35.0%
	GGAACAAAAGCTGAAAGAAT+GGG	-	chr2.4:13772230-13772249	MS.gene43039:CDS	35.0%
	TAAAGAGAATGGTACTGCTA+GGG	-	chr2.4:13772122-13772141	MS.gene43039:CDS	35.0%
	TGACTCATAACATCTCAACA+TGG	-	chr2.4:13771956-13771975	MS.gene43039:CDS	35.0%
	TTGCTGATGTACGTAAATCA+AGG	-	chr2.4:13772325-13772344	MS.gene43039:CDS	35.0%
!	AGGTTAAAGTACCTGAAAAC+TGG	-	chr2.4:13772202-13772221	MS.gene43039:CDS	35.0%
!	GGTTAAAGTACCTGAAAACT+GGG	-	chr2.4:13772203-13772222	MS.gene43039:CDS	35.0%
	CTCTTTACTCTCTTCCTCTT+TGG	+	chr2.4:13772109-13772128	None:intergenic	40.0%
	GAAGTTGGAATATGGCAAGT+AGG	+	chr2.4:13771994-13772013	None:intergenic	40.0%
	GAGGAAGAGAGTAAAGAGAA+TGG	-	chr2.4:13772111-13772130	MS.gene43039:CDS	40.0%
	GTAAAGAGAATGGTACTGCT+AGG	-	chr2.4:13772121-13772140	MS.gene43039:CDS	40.0%
	TGCTAGGGTAGAGGAAATTA+CGG	-	chr2.4:13772137-13772156	MS.gene43039:CDS	40.0%
!	TGATGATGAAAAGGCCAAAG+AGG	-	chr2.4:13772092-13772111	MS.gene43039:CDS	40.0%
	AGGCATAGGGAAGAGATGAA+GGG	-	chr2.4:13772177-13772196	MS.gene43039:CDS	45.0%
	AGTACCTGAAAACTGGGAGA+AGG	-	chr2.4:13772209-13772228	MS.gene43039:CDS	45.0%
	CTAGGGTAGAGGAAATTACG+GGG	-	chr2.4:13772139-13772158	MS.gene43039:CDS	45.0%
	GCTAGGGTAGAGGAAATTAC+GGG	-	chr2.4:13772138-13772157	MS.gene43039:CDS	45.0%
	TAGGGAAGAGATGAAGGGAA+AGG	-	chr2.4:13772182-13772201	MS.gene43039:CDS	45.0%
!	TGAGAGGTTGAAGAGGCATA+GGG	-	chr2.4:13772164-13772183	MS.gene43039:CDS	45.0%
!	TGTTCCTTCTCCCAGTTTTC+AGG	+	chr2.4:13772216-13772235	None:intergenic	45.0%
	GAATGGTACTGCTAGGGTAG+AGG	-	chr2.4:13772128-13772147	MS.gene43039:CDS	50.0%
	GAGGCATAGGGAAGAGATGA+AGG	-	chr2.4:13772176-13772195	MS.gene43039:CDS	50.0%
!	GTGAGAGGTTGAAGAGGCAT+AGG	-	chr2.4:13772163-13772182	MS.gene43039:CDS	50.0%
	AGGAAATTACGGGGCGTGAG+AGG	-	chr2.4:13772148-13772167	MS.gene43039:CDS	55.0%
	CGGGGCGTGAGAGGTTGAAG+AGG	-	chr2.4:13772157-13772176	MS.gene43039:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	13771937	13772374	13771937	ID=MS.gene43039
chr2.4	mRNA	13771937	13772374	13771937	ID=MS.gene43039.t1;Parent=MS.gene43039
chr2.4	exon	13771937	13772374	13771937	ID=MS.gene43039.t1.exon1;Parent=MS.gene43039.t1
chr2.4	CDS	13771937	13772374	13771937	ID=cds.MS.gene43039.t1;Parent=MS.gene43039.t1

Gene Sequence

>MS.gene43039

ATGGATCAGGAAAATAGATTGACTCATAACATCTCAACATGGAAGAGAAGAAACCCTACTTGCCATATTCCAACTTCATTATTATCCCTTCAACAAAATGATTACAAGCTCGAGTGCAACTCTCCAAATACGAAAAGCTATGATGAGATTGATGATGATGATGAAAAGGCCAAAGAGGAAGAGAGTAAAGAGAATGGTACTGCTAGGGTAGAGGAAATTACGGGGCGTGAGAGGTTGAAGAGGCATAGGGAAGAGATGAAGGGAAAGGTTAAAGTACCTGAAAACTGGGAGAAGGAACAAAAGCTGAAAGAATGGGTTGACTATACTACGTTTGATGCATTGATATTTGCTCCTCATGCATTGATTGTTAATGCTCGTGATGCCCTTATTGCTGATGTACGTAAATCAAGGTCACAAAGATTAGGGATCCATACCTAG

Protein sequence

>MS.gene43039.t1

MDQENRLTHNISTWKRRNPTCHIPTSLLSLQQNDYKLECNSPNTKSYDEIDDDDEKAKEEESKENGTARVEEITGRERLKRHREEMKGKVKVPENWEKEQKLKEWVDYTTFDALIFAPHALIVNARDALIADVRKSRSQRLGIHT