Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43467.t1 | XP_013458698.1 | 88.4 | 198 | 19 | 2 | 29 | 223 | 104 | 300 | 1.00E-89 | 339.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43467.t1 | P37574 | 31.9 | 141 | 93 | 3 | 82 | 221 | 3 | 141 | 1.8e-10 | 67.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43467.t1 | A0A072V3J1 | 88.4 | 198 | 19 | 2 | 29 | 223 | 104 | 300 | 7.4e-90 | 339.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene43467 | 0.803855 | 2.86E-49 | -1.69E-46 |
| MS.gene049488 | MS.gene43467 | 0.82068 | 6.03E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene43467 | 0.836232 | 1.06E-56 | -1.69E-46 |
| MS.gene050625 | MS.gene43467 | 0.801881 | 7.30E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene43467 | 0.838635 | 2.56E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene43467 | 0.818405 | 1.99E-52 | -1.69E-46 |
| MS.gene051360 | MS.gene43467 | 0.815014 | 1.15E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene43467 | 0.814307 | 1.65E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene43467 | 0.805152 | 1.53E-49 | -1.69E-46 |
| MS.gene052011 | MS.gene43467 | -0.829424 | 5.19E-55 | -1.69E-46 |
| MS.gene052188 | MS.gene43467 | 0.821006 | 5.08E-53 | -1.69E-46 |
| MS.gene052253 | MS.gene43467 | 0.858646 | 7.14E-63 | -1.69E-46 |
| MS.gene052481 | MS.gene43467 | 0.802118 | 6.53E-49 | -1.69E-46 |
| MS.gene052485 | MS.gene43467 | 0.812207 | 4.76E-51 | -1.69E-46 |
| MS.gene052982 | MS.gene43467 | 0.801057 | 1.08E-48 | -1.69E-46 |
| MS.gene053758 | MS.gene43467 | 0.80842 | 3.13E-50 | -1.69E-46 |
| MS.gene053912 | MS.gene43467 | 0.80928 | 2.05E-50 | -1.69E-46 |
| MS.gene054011 | MS.gene43467 | 0.809108 | 2.23E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene43467 | 0.827666 | 1.38E-54 | -1.69E-46 |
| MS.gene054473 | MS.gene43467 | 0.802728 | 4.89E-49 | -1.69E-46 |
| MS.gene054920 | MS.gene43467 | 0.807987 | 3.86E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene43467 | 0.829276 | 5.64E-55 | -1.69E-46 |
| MS.gene055604 | MS.gene43467 | 0.810351 | 1.20E-50 | -1.69E-46 |
| MS.gene05594 | MS.gene43467 | 0.805126 | 1.55E-49 | -1.69E-46 |
| MS.gene056514 | MS.gene43467 | 0.800909 | 1.16E-48 | -1.69E-46 |
| MS.gene056659 | MS.gene43467 | 0.827192 | 1.79E-54 | -1.69E-46 |
| MS.gene057146 | MS.gene43467 | 0.816633 | 5.00E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene43467 | 0.808345 | 3.24E-50 | -1.69E-46 |
| MS.gene057476 | MS.gene43467 | 0.853969 | 1.68E-61 | -1.69E-46 |
| MS.gene057749 | MS.gene43467 | 0.842526 | 2.45E-58 | -1.69E-46 |
| MS.gene057823 | MS.gene43467 | 0.837031 | 6.61E-57 | -1.69E-46 |
| MS.gene057825 | MS.gene43467 | 0.816524 | 5.29E-52 | -1.69E-46 |
| MS.gene057888 | MS.gene43467 | 0.814972 | 1.17E-51 | -1.69E-46 |
| MS.gene058007 | MS.gene43467 | 0.816003 | 6.92E-52 | -1.69E-46 |
| MS.gene058142 | MS.gene43467 | 0.801454 | 8.94E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene43467 | 0.832037 | 1.19E-55 | -1.69E-46 |
| MS.gene058700 | MS.gene43467 | 0.810768 | 9.78E-51 | -1.69E-46 |
| MS.gene05886 | MS.gene43467 | 0.856404 | 3.29E-62 | -1.69E-46 |
| MS.gene058928 | MS.gene43467 | 0.814557 | 1.45E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene43467 | 0.822904 | 1.85E-53 | -1.69E-46 |
| MS.gene059141 | MS.gene43467 | 0.804392 | 2.21E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene43467 | 0.841953 | 3.48E-58 | -1.69E-46 |
| MS.gene059462 | MS.gene43467 | 0.811743 | 6.01E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene43467 | 0.809219 | 2.11E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene43467 | 0.833511 | 5.11E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene43467 | 0.811276 | 7.59E-51 | -1.69E-46 |
| MS.gene059695 | MS.gene43467 | 0.809513 | 1.82E-50 | -1.69E-46 |
| MS.gene05984 | MS.gene43467 | 0.800557 | 1.36E-48 | -1.69E-46 |
| MS.gene059876 | MS.gene43467 | 0.803302 | 3.72E-49 | -1.69E-46 |
| MS.gene060247 | MS.gene43467 | 0.808294 | 3.32E-50 | -1.69E-46 |
| MS.gene060837 | MS.gene43467 | 0.802668 | 5.03E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene43467 | 0.803364 | 3.61E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43467.t1 | MTR_4g134410 | 88.384 | 198 | 19 | 2 | 29 | 223 | 104 | 300 | 6.60e-126 | 359 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43467.t1 | AT2G02410 | 71.809 | 188 | 44 | 4 | 38 | 223 | 7 | 187 | 3.16e-91 | 268 |
| MS.gene43467.t1 | AT2G02410 | 71.809 | 188 | 44 | 4 | 38 | 223 | 7 | 187 | 3.16e-91 | 268 |
| MS.gene43467.t1 | AT2G02410 | 66.986 | 209 | 54 | 5 | 23 | 223 | 7 | 208 | 4.50e-91 | 268 |
| MS.gene43467.t1 | AT2G02410 | 71.809 | 188 | 44 | 4 | 38 | 223 | 45 | 225 | 1.36e-90 | 267 |
| MS.gene43467.t1 | AT2G02410 | 71.809 | 188 | 44 | 4 | 38 | 223 | 93 | 273 | 4.83e-90 | 268 |
| MS.gene43467.t1 | AT2G02410 | 62.500 | 216 | 44 | 5 | 38 | 223 | 93 | 301 | 5.04e-84 | 253 |
| MS.gene43467.t1 | AT2G02410 | 72.327 | 159 | 35 | 4 | 38 | 194 | 45 | 196 | 1.09e-73 | 223 |
| MS.gene43467.t1 | AT2G02410 | 72.327 | 159 | 35 | 4 | 38 | 194 | 93 | 244 | 2.43e-73 | 224 |
| MS.gene43467.t1 | AT2G02410 | 72.327 | 159 | 35 | 4 | 38 | 194 | 93 | 244 | 2.43e-73 | 224 |
| MS.gene43467.t1 | AT2G02410 | 68.182 | 132 | 33 | 4 | 38 | 167 | 45 | 169 | 4.73e-53 | 169 |
| MS.gene43467.t1 | AT2G02410 | 68.182 | 132 | 33 | 4 | 38 | 167 | 93 | 217 | 7.22e-53 | 171 |
| MS.gene43467.t1 | AT2G02410 | 68.182 | 132 | 33 | 4 | 38 | 167 | 93 | 217 | 7.22e-53 | 171 |
| MS.gene43467.t1 | AT2G02410 | 56.250 | 160 | 33 | 5 | 38 | 167 | 93 | 245 | 8.10e-47 | 156 |
Find 56 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTAGGTTTCAGCTTTAA+AGG | 0.156682 | 8.4:-385987 | MS.gene43467:intron |
| AGGATGGTTGCCCCAAAGTC+TGG | 0.335763 | 8.4:-385964 | MS.gene43467:CDS |
| TTGGCGTTAGAAGTGATTCT+AGG | 0.343874 | 8.4:+386660 | None:intergenic |
| GGAAGAATATTCCTTGTGAT+TGG | 0.354869 | 8.4:+386167 | None:intergenic |
| ACACAAATCAGCTGGGTCTT+GGG | 0.361413 | 8.4:-386395 | MS.gene43467:CDS |
| TAACCATCAACAAGCAAAAC+AGG | 0.364806 | 8.4:+386345 | None:intergenic |
| GTTACAATGTCTGTGGATAT+TGG | 0.373030 | 8.4:-386326 | MS.gene43467:CDS |
| GAAGAATATTCCTTGTGATT+GGG | 0.378710 | 8.4:+386168 | None:intergenic |
| TAAGTTCGTCAATAAGCTTC+TGG | 0.389972 | 8.4:+386256 | None:intergenic |
| GAAGTGATTCTAGGAGGAGT+TGG | 0.391837 | 8.4:+386669 | None:intergenic |
| GTATTTGATGCCATGATGTC+TGG | 0.393030 | 8.4:-386195 | MS.gene43467:CDS |
| ATTCTAGGAGGAGTTGGAGT+TGG | 0.400020 | 8.4:+386675 | None:intergenic |
| GGAGGAGTTGGAGTTGGAGT+TGG | 0.403011 | 8.4:+386681 | None:intergenic |
| ACCTTCGCTTCCTCAAGATA+TGG | 0.413759 | 8.4:-386632 | MS.gene43467:CDS |
| AGAAGTGACGACCCAGACTT+TGG | 0.415939 | 8.4:+385952 | None:intergenic |
| GAAGTGACGACCCAGACTTT+GGG | 0.421042 | 8.4:+385953 | None:intergenic |
| TACACAAATCAGCTGGGTCT+TGG | 0.424310 | 8.4:-386396 | MS.gene43467:CDS |
| GTGTAGTAGAGGGAGGTTGT+TGG | 0.441657 | 8.4:+386414 | None:intergenic |
| GAGGAAGCGAAGGTTCTGTT+TGG | 0.441688 | 8.4:+386641 | None:intergenic |
| CTGATGCATCTGCTGATACA+TGG | 0.474850 | 8.4:-386122 | MS.gene43467:CDS |
| AAAGAAGAAGGCCGAGAAAG+AGG | 0.474951 | 8.4:-386463 | MS.gene43467:CDS |
| AAGAATATTCCTTGTGATTG+GGG | 0.489548 | 8.4:+386169 | None:intergenic |
| CCTCTACTACACAAATCAGC+TGG | 0.492718 | 8.4:-386403 | MS.gene43467:CDS |
| CACAAATCAGCTGGGTCTTG+GGG | 0.493462 | 8.4:-386394 | MS.gene43467:CDS |
| ATCCGCAAGATCCTCTTTCT+CGG | 0.497073 | 8.4:+386452 | None:intergenic |
| TGTTTGGAGCAGCAAGGCAT+TGG | 0.500774 | 8.4:-385658 | MS.gene43467:CDS |
| GTAGATCAAGGCATCACAAA+AGG | 0.512172 | 8.4:-385385 | MS.gene43467:intron |
| AATCACAAGGAATATTCTTC+CGG | 0.528595 | 8.4:-386165 | MS.gene43467:CDS |
| CCAGCTGATTTGTGTAGTAG+AGG | 0.530779 | 8.4:+386403 | None:intergenic |
| TGAGAAAACAATGTCGATGC+CGG | 0.535047 | 8.4:+386146 | None:intergenic |
| GTTTCAGCTTTAAAGGAGGA+TGG | 0.538423 | 8.4:-385980 | MS.gene43467:CDS |
| CACCTTTAGTATGCTTAGAG+AGG | 0.540405 | 8.4:-386232 | MS.gene43467:CDS |
| AGGTTGTTGGATCACGATAG+AGG | 0.546658 | 8.4:+386427 | None:intergenic |
| GGATGGTTGCCCCAAAGTCT+GGG | 0.556380 | 8.4:-385963 | MS.gene43467:CDS |
| TGCCTTGCTGCTCCAAACAA+AGG | 0.558029 | 8.4:+385662 | None:intergenic |
| GACCTCTCTAAGCATACTAA+AGG | 0.559341 | 8.4:+386230 | None:intergenic |
| ATTGGGGAATCCAGACATCA+TGG | 0.573403 | 8.4:+386185 | None:intergenic |
| CTCTACTACACAAATCAGCT+GGG | 0.575051 | 8.4:-386402 | MS.gene43467:CDS |
| GGCCGAGAAAGAGGATCTTG+CGG | 0.579972 | 8.4:-386454 | MS.gene43467:CDS |
| GGCCTTTGTTTGGAGCAGCA+AGG | 0.582037 | 8.4:-385664 | MS.gene43467:CDS |
| CAGCTGATTTGTGTAGTAGA+GGG | 0.582819 | 8.4:+386404 | None:intergenic |
| TCCATATCTTGAGGAAGCGA+AGG | 0.583867 | 8.4:+386631 | None:intergenic |
| AAGAGATGCTTCAAGAGCAA+AGG | 0.590832 | 8.4:-385356 | MS.gene43467:intron |
| AAGTGACGACCCAGACTTTG+GGG | 0.593977 | 8.4:+385954 | None:intergenic |
| TACCTACCTTCCATATCTTG+AGG | 0.597905 | 8.4:+386622 | None:intergenic |
| ACAAATCAGCTGGGTCTTGG+GGG | 0.604764 | 8.4:-386393 | MS.gene43467:CDS |
| TGTCAACAACAAGCAGCACA+TGG | 0.612468 | 8.4:-385923 | MS.gene43467:CDS |
| GTCTGGATTCCCCAATCACA+AGG | 0.613410 | 8.4:-386178 | MS.gene43467:CDS |
| CTGATTTGTGTAGTAGAGGG+AGG | 0.619033 | 8.4:+386407 | None:intergenic |
| GTTGATGGTTACAATGTCTG+TGG | 0.627615 | 8.4:-386333 | MS.gene43467:CDS |
| GCGTTAGAAGTGATTCTAGG+AGG | 0.630133 | 8.4:+386663 | None:intergenic |
| TCGCTTCCTCAAGATATGGA+AGG | 0.635284 | 8.4:-386628 | MS.gene43467:intron |
| TTAGGTTTCAGCTTTAAAGG+AGG | 0.636930 | 8.4:-385984 | MS.gene43467:intron |
| GATCAAGGCATCACAAAAGG+AGG | 0.644648 | 8.4:-385382 | MS.gene43467:CDS |
| AACCATCAACAAGCAAAACA+GGG | 0.648456 | 8.4:+386346 | None:intergenic |
| CAGCAAGGCATTGGTAACCG+AGG | 0.676741 | 8.4:-385649 | MS.gene43467:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATATTATTATTTATTT+AGG | - | chr8.4:385249-385268 | MS.gene43467:intron | 0.0% |
| !! | AAAATCACAATAGATAAAAC+TGG | + | chr8.4:386618-386637 | None:intergenic | 20.0% |
| !! | AACAAAACGAATATATCTAA+TGG | + | chr8.4:386493-386512 | None:intergenic | 20.0% |
| !! | CATTTGAAAAAAAGAAGAAA+AGG | + | chr8.4:386035-386054 | None:intergenic | 20.0% |
| !!! | TTGAATCTCAAATTTTTGAA+TGG | - | chr8.4:386213-386232 | MS.gene43467:CDS | 20.0% |
| ! | ACCATGTAAAATATCATTGA+AGG | + | chr8.4:386359-386378 | None:intergenic | 25.0% |
| ! | CTTAATGAGTATCTAACTAT+GGG | - | chr8.4:386657-386676 | MS.gene43467:CDS | 25.0% |
| ! | TATTCTTTACTCCTCAATTT+AGG | - | chr8.4:385785-385804 | MS.gene43467:intron | 25.0% |
| ! | TGTAATTGAGATTTATACTC+TGG | - | chr8.4:386088-386107 | MS.gene43467:intron | 25.0% |
| ! | TTAATGAGTATCTAACTATG+GGG | - | chr8.4:386658-386677 | MS.gene43467:CDS | 25.0% |
| !! | AATTTAGGTTTCAGCTTTAA+AGG | - | chr8.4:385800-385819 | MS.gene43467:intron | 25.0% |
| !! | CTCAAAAAACATTTTCTCAA+TGG | - | chr8.4:385490-385509 | MS.gene43467:intron | 25.0% |
| !! | GTCATATTAATGTTTTACCT+CGG | + | chr8.4:386158-386177 | None:intergenic | 25.0% |
| !! | TCCTTCAATGATATTTTACA+TGG | - | chr8.4:386355-386374 | MS.gene43467:CDS | 25.0% |
| !! | TTTTATGATTTTTCGCTGTA+TGG | - | chr8.4:386520-386539 | MS.gene43467:intron | 25.0% |
| !!! | TTCTTCTTTTTTTCAAATGC+TGG | - | chr8.4:386036-386055 | MS.gene43467:intron | 25.0% |
| AAGAATATTCCTTGTGATTG+GGG | + | chr8.4:385621-385640 | None:intergenic | 30.0% | |
| AATCACAAGGAATATTCTTC+CGG | - | chr8.4:385622-385641 | MS.gene43467:intron | 30.0% | |
| CCATAGTTAGATACTCATTA+AGG | + | chr8.4:386659-386678 | None:intergenic | 30.0% | |
| CCTTAATGAGTATCTAACTA+TGG | - | chr8.4:386656-386675 | MS.gene43467:CDS | 30.0% | |
| CTTGCATTGTAATTCTTGAT+GGG | - | chr8.4:386694-386713 | MS.gene43467:CDS | 30.0% | |
| GAAGAATATTCCTTGTGATT+GGG | + | chr8.4:385622-385641 | None:intergenic | 30.0% | |
| GAGAGAACAATAGTTATGAT+TGG | + | chr8.4:385955-385974 | None:intergenic | 30.0% | |
| GTGACAAATTGACAATCATT+TGG | - | chr8.4:386320-386339 | MS.gene43467:CDS | 30.0% | |
| TAAAGCTGAAACCTAAATTG+AGG | + | chr8.4:385799-385818 | None:intergenic | 30.0% | |
| TAGTTACCGTAAAAAGAAGA+AGG | - | chr8.4:385312-385331 | MS.gene43467:intron | 30.0% | |
| TGTCACACTAATCAAAGATT+TGG | + | chr8.4:386306-386325 | None:intergenic | 30.0% | |
| ! | TGATACATGGATTGAAAAAG+AGG | - | chr8.4:385678-385697 | MS.gene43467:intron | 30.0% |
| ! | TTATACTCTGGATGTTTTCA+GGG | - | chr8.4:386100-386119 | MS.gene43467:intron | 30.0% |
| ! | TTTATACTCTGGATGTTTTC+AGG | - | chr8.4:386099-386118 | MS.gene43467:intron | 30.0% |
| ! | TTTTTACGGTAACTAGTTGA+AGG | + | chr8.4:385307-385326 | None:intergenic | 30.0% |
| !! | GGTCTTGTTTATTACTTGTT+TGG | - | chr8.4:386376-386395 | MS.gene43467:CDS | 30.0% |
| AACCATCAACAAGCAAAACA+GGG | + | chr8.4:385444-385463 | None:intergenic | 35.0% | |
| ACATGACCATACAGTTAAAG+AGG | - | chr8.4:386271-386290 | MS.gene43467:CDS | 35.0% | |
| CTTGTTTGGATAGTAGATCA+AGG | - | chr8.4:386390-386409 | MS.gene43467:CDS | 35.0% | |
| GCTTGCATTGTAATTCTTGA+TGG | - | chr8.4:386693-386712 | MS.gene43467:CDS | 35.0% | |
| GGAAGAATATTCCTTGTGAT+TGG | + | chr8.4:385623-385642 | None:intergenic | 35.0% | |
| GTTACAATGTCTGTGGATAT+TGG | - | chr8.4:385461-385480 | MS.gene43467:intron | 35.0% | |
| TAACCATCAACAAGCAAAAC+AGG | + | chr8.4:385445-385464 | None:intergenic | 35.0% | |
| TAAGTTCGTCAATAAGCTTC+TGG | + | chr8.4:385534-385553 | None:intergenic | 35.0% | |
| TCTGAACCTCTTTAACTGTA+TGG | + | chr8.4:386280-386299 | None:intergenic | 35.0% | |
| TTGTTGATCTGTGCAAACTA+AGG | - | chr8.4:385976-385995 | MS.gene43467:CDS | 35.0% | |
| ! | TATACTCTGGATGTTTTCAG+GGG | - | chr8.4:386101-386120 | MS.gene43467:intron | 35.0% |
| !! | TTAGGTTTCAGCTTTAAAGG+AGG | - | chr8.4:385803-385822 | MS.gene43467:intron | 35.0% |
| !! | TTAGTTTGCACAGATCAACA+AGG | + | chr8.4:385977-385996 | None:intergenic | 35.0% |
| AAGAGATGCTTCAAGAGCAA+AGG | - | chr8.4:386431-386450 | MS.gene43467:CDS | 40.0% | |
| CACCTTTAGTATGCTTAGAG+AGG | - | chr8.4:385555-385574 | MS.gene43467:intron | 40.0% | |
| CTCTACTACACAAATCAGCT+GGG | - | chr8.4:385385-385404 | MS.gene43467:intron | 40.0% | |
| GACCTCTCTAAGCATACTAA+AGG | + | chr8.4:385560-385579 | None:intergenic | 40.0% | |
| GTATTTGATGCCATGATGTC+TGG | - | chr8.4:385592-385611 | MS.gene43467:intron | 40.0% | |
| TACCTACCTTCCATATCTTG+AGG | + | chr8.4:385168-385187 | None:intergenic | 40.0% | |
| TGAGAAAACAATGTCGATGC+CGG | + | chr8.4:385644-385663 | None:intergenic | 40.0% | |
| TGCACAGGCAATTAATACAC+AGG | + | chr8.4:386553-386572 | None:intergenic | 40.0% | |
| TTCCTCAAGATATGGAAGGT+AGG | - | chr8.4:385163-385182 | MS.gene43467:intron | 40.0% | |
| TTGGCGTTAGAAGTGATTCT+AGG | + | chr8.4:385130-385149 | None:intergenic | 40.0% | |
| ! | GTAGATCAAGGCATCACAAA+AGG | - | chr8.4:386402-386421 | MS.gene43467:CDS | 40.0% |
| ! | TATTGCATCTCAAGTTGCAC+AGG | + | chr8.4:386568-386587 | None:intergenic | 40.0% |
| ! | TCTCGGCCTTCTTCTTTTTA+CGG | + | chr8.4:385321-385340 | None:intergenic | 40.0% |
| ! | TTATGGCAGAACTTTTCTGC+AGG | + | chr8.4:386722-386741 | None:intergenic | 40.0% |
| !! | ATACTCTGGATGTTTTCAGG+GGG | - | chr8.4:386102-386121 | MS.gene43467:intron | 40.0% |
| !! | CAGCTGATTTGTGTAGTAGA+GGG | + | chr8.4:385386-385405 | None:intergenic | 40.0% |
| !! | GTTGATGGTTACAATGTCTG+TGG | - | chr8.4:385454-385473 | MS.gene43467:intron | 40.0% |
| !! | GTTTCAGCTTTAAAGGAGGA+TGG | - | chr8.4:385807-385826 | MS.gene43467:intron | 40.0% |
| !!! | GAGTGCTGGATTTTCGTTTT+TGG | + | chr8.4:385279-385298 | None:intergenic | 40.0% |
| AAAGAAGAAGGCCGAGAAAG+AGG | - | chr8.4:385324-385343 | MS.gene43467:intron | 45.0% | |
| ACACAAATCAGCTGGGTCTT+GGG | - | chr8.4:385392-385411 | MS.gene43467:intron | 45.0% | |
| ACCTTCGCTTCCTCAAGATA+TGG | - | chr8.4:385155-385174 | MS.gene43467:intron | 45.0% | |
| AGGTTGTTGGATCACGATAG+AGG | + | chr8.4:385363-385382 | None:intergenic | 45.0% | |
| ATCCGCAAGATCCTCTTTCT+CGG | + | chr8.4:385338-385357 | None:intergenic | 45.0% | |
| ATTGGGGAATCCAGACATCA+TGG | + | chr8.4:385605-385624 | None:intergenic | 45.0% | |
| CCTCTACTACACAAATCAGC+TGG | - | chr8.4:385384-385403 | MS.gene43467:CDS | 45.0% | |
| CGGTAACTAGTTGAAGGTCT+TGG | + | chr8.4:385301-385320 | None:intergenic | 45.0% | |
| CTGATGCATCTGCTGATACA+TGG | - | chr8.4:385665-385684 | MS.gene43467:CDS | 45.0% | |
| GCGTTAGAAGTGATTCTAGG+AGG | + | chr8.4:385127-385146 | None:intergenic | 45.0% | |
| TACACAAATCAGCTGGGTCT+TGG | - | chr8.4:385391-385410 | MS.gene43467:intron | 45.0% | |
| TCCATATCTTGAGGAAGCGA+AGG | + | chr8.4:385159-385178 | None:intergenic | 45.0% | |
| TCGCTTCCTCAAGATATGGA+AGG | - | chr8.4:385159-385178 | MS.gene43467:intron | 45.0% | |
| TGTCAACAACAAGCAGCACA+TGG | - | chr8.4:385864-385883 | MS.gene43467:intron | 45.0% | |
| ! | ATTCTAGGAGGAGTTGGAGT+TGG | + | chr8.4:385115-385134 | None:intergenic | 45.0% |
| ! | CTGATTTGTGTAGTAGAGGG+AGG | + | chr8.4:385383-385402 | None:intergenic | 45.0% |
| ! | GAAGTGATTCTAGGAGGAGT+TGG | + | chr8.4:385121-385140 | None:intergenic | 45.0% |
| ! | GATCAAGGCATCACAAAAGG+AGG | - | chr8.4:386405-386424 | MS.gene43467:CDS | 45.0% |
| !! | CCAGCTGATTTGTGTAGTAG+AGG | + | chr8.4:385387-385406 | None:intergenic | 45.0% |
| !! | GTCCCTGTTTTGCTTGTTGA+TGG | - | chr8.4:385439-385458 | MS.gene43467:intron | 45.0% |
| !! | ATAAATTAAATAAATAAGTA+AGG | + | chr8.4:385191-385210 | None:intergenic | 5.0% |
| AAGTGACGACCCAGACTTTG+GGG | + | chr8.4:385836-385855 | None:intergenic | 50.0% | |
| ACAAATCAGCTGGGTCTTGG+GGG | - | chr8.4:385394-385413 | MS.gene43467:intron | 50.0% | |
| AGAAGTGACGACCCAGACTT+TGG | + | chr8.4:385838-385857 | None:intergenic | 50.0% | |
| AGTTGAAGGTCTTGGAGTGC+TGG | + | chr8.4:385293-385312 | None:intergenic | 50.0% | |
| CACAAATCAGCTGGGTCTTG+GGG | - | chr8.4:385393-385412 | MS.gene43467:intron | 50.0% | |
| GAAGTGACGACCCAGACTTT+GGG | + | chr8.4:385837-385856 | None:intergenic | 50.0% | |
| GAGGAAGCGAAGGTTCTGTT+TGG | + | chr8.4:385149-385168 | None:intergenic | 50.0% | |
| GTCTGGATTCCCCAATCACA+AGG | - | chr8.4:385609-385628 | MS.gene43467:intron | 50.0% | |
| GTGTAGTAGAGGGAGGTTGT+TGG | + | chr8.4:385376-385395 | None:intergenic | 50.0% | |
| TGCCTTGCTGCTCCAAACAA+AGG | + | chr8.4:386128-386147 | None:intergenic | 50.0% | |
| ! | TGTTTGGAGCAGCAAGGCAT+TGG | - | chr8.4:386129-386148 | MS.gene43467:CDS | 50.0% |
| !! | GTTTTCAGGGGGCCTTTGTT+TGG | - | chr8.4:386113-386132 | MS.gene43467:CDS | 50.0% |
| AGGATGGTTGCCCCAAAGTC+TGG | - | chr8.4:385823-385842 | MS.gene43467:intron | 55.0% | |
| GGAGGAGTTGGAGTTGGAGT+TGG | + | chr8.4:385109-385128 | None:intergenic | 55.0% | |
| GGATGGTTGCCCCAAAGTCT+GGG | - | chr8.4:385824-385843 | MS.gene43467:intron | 55.0% | |
| GGCCGAGAAAGAGGATCTTG+CGG | - | chr8.4:385333-385352 | MS.gene43467:intron | 55.0% | |
| ! | GGCCTTTGTTTGGAGCAGCA+AGG | - | chr8.4:386123-386142 | MS.gene43467:CDS | 55.0% |
| !! | CAGCAAGGCATTGGTAACCG+AGG | - | chr8.4:386138-386157 | MS.gene43467:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 385068 | 386741 | 385068 | ID=MS.gene43467 |
| chr8.4 | mRNA | 385068 | 386741 | 385068 | ID=MS.gene43467.t1;Parent=MS.gene43467 |
| chr8.4 | exon | 386629 | 386741 | 386629 | ID=MS.gene43467.t1.exon1;Parent=MS.gene43467.t1 |
| chr8.4 | CDS | 386629 | 386741 | 386629 | ID=cds.MS.gene43467.t1;Parent=MS.gene43467.t1 |
| chr8.4 | exon | 386110 | 386494 | 386110 | ID=MS.gene43467.t1.exon2;Parent=MS.gene43467.t1 |
| chr8.4 | CDS | 386110 | 386494 | 386110 | ID=cds.MS.gene43467.t1;Parent=MS.gene43467.t1 |
| chr8.4 | exon | 385919 | 386002 | 385919 | ID=MS.gene43467.t1.exon3;Parent=MS.gene43467.t1 |
| chr8.4 | CDS | 385919 | 386002 | 385919 | ID=cds.MS.gene43467.t1;Parent=MS.gene43467.t1 |
| chr8.4 | exon | 385650 | 385688 | 385650 | ID=MS.gene43467.t1.exon4;Parent=MS.gene43467.t1 |
| chr8.4 | CDS | 385650 | 385688 | 385650 | ID=cds.MS.gene43467.t1;Parent=MS.gene43467.t1 |
| chr8.4 | exon | 385357 | 385403 | 385357 | ID=MS.gene43467.t1.exon5;Parent=MS.gene43467.t1 |
| chr8.4 | CDS | 385357 | 385403 | 385357 | ID=cds.MS.gene43467.t1;Parent=MS.gene43467.t1 |
| chr8.4 | exon | 385068 | 385083 | 385068 | ID=MS.gene43467.t1.exon6;Parent=MS.gene43467.t1 |
| chr8.4 | CDS | 385068 | 385083 | 385068 | ID=cds.MS.gene43467.t1;Parent=MS.gene43467.t1 |
| Gene Sequence |
| Protein sequence |
