AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45445


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45445.t1 MTR_4g068320 96.270 429 13 1 1 426 1 429 0.0 850
MS.gene45445.t1 MTR_1g034240 61.785 437 149 7 2 426 3 433 0.0 546
MS.gene45445.t1 MTR_1g034210 47.475 396 173 7 4 397 5 367 5.11e-115 341
MS.gene45445.t1 MTR_1g034210 45.042 353 159 7 4 354 5 324 4.90e-91 278
MS.gene45445.t1 MTR_3g005480 35.971 139 84 1 3 141 18 151 3.14e-24 101
MS.gene45445.t1 MTR_3g005480 37.241 145 71 6 257 391 129 263 6.97e-16 77.8
MS.gene45445.t1 MTR_5g070440 42.157 102 59 0 3 104 18 119 1.84e-23 99.8
MS.gene45445.t1 MTR_5g070440 36.170 141 69 4 263 388 134 268 2.10e-14 73.6
MS.gene45445.t1 MTR_3g005490 40.000 110 66 0 3 112 18 127 1.16e-22 97.1
MS.gene45445.t1 MTR_3g005490 35.821 134 70 5 267 391 136 262 1.32e-13 70.9
MS.gene45445.t1 MTR_3g061290 37.778 135 74 2 6 140 12 136 2.01e-22 94.7
MS.gene45445.t1 MTR_8g103940 40.741 108 64 0 6 113 39 146 5.68e-22 98.2
MS.gene45445.t1 MTR_8g103940 38.843 121 66 5 280 399 228 341 1.31e-17 85.1
MS.gene45445.t1 MTR_7g050720 40.909 110 63 1 1 110 5 112 6.89e-22 95.9
MS.gene45445.t1 MTR_7g050720 35.115 131 74 4 268 388 186 315 3.65e-14 73.6
MS.gene45445.t1 MTR_7g050560 41.905 105 59 1 6 110 13 115 6.98e-22 95.9
MS.gene45445.t1 MTR_7g050560 30.303 132 85 3 268 393 165 295 2.21e-11 65.1
MS.gene45445.t1 MTR_3g061310 36.364 132 74 2 6 137 12 133 7.17e-22 95.5
MS.gene45445.t1 MTR_3g061350 36.364 132 75 2 6 137 12 134 9.35e-22 95.1
MS.gene45445.t1 MTR_7g050710 41.414 99 58 0 6 104 13 111 1.55e-21 95.1
MS.gene45445.t1 MTR_7g050710 34.848 132 78 2 270 393 181 312 9.17e-15 75.5
MS.gene45445.t1 MTR_3g061320 35.606 132 75 2 6 137 12 133 9.82e-21 92.0
MS.gene45445.t1 MTR_3g098790 38.393 112 67 1 6 117 13 122 1.65e-20 92.4
MS.gene45445.t1 MTR_3g098790 36.585 123 72 2 277 393 182 304 8.45e-18 84.3
MS.gene45445.t1 MTR_1g021330 24.812 399 245 8 18 412 38 385 2.20e-20 92.8
MS.gene45445.t1 MTR_3g005420 41.176 102 60 0 3 104 286 387 3.75e-20 93.2
MS.gene45445.t1 MTR_3g005420 33.981 103 67 1 3 104 37 139 1.61e-15 79.0
MS.gene45445.t1 MTR_3g005420 34.848 132 75 4 264 391 415 539 1.61e-14 75.9
MS.gene45445.t1 MTR_3g005420 36.538 156 74 9 274 417 157 299 1.83e-11 66.2
MS.gene45445.t1 MTR_3g061330 34.848 132 76 2 6 137 12 133 4.50e-20 89.4
MS.gene45445.t1 MTR_7g050580 38.095 105 63 1 6 110 13 115 6.07e-20 90.5
MS.gene45445.t1 MTR_7g050580 34.127 126 77 2 274 393 170 295 9.12e-14 72.0
MS.gene45445.t1 MTR_1g021440 28.000 400 223 16 11 392 27 379 7.61e-20 91.3
MS.gene45445.t1 MTR_7g050590 41.667 96 54 1 22 115 2 97 1.11e-19 89.4
MS.gene45445.t1 MTR_1g035460 37.500 120 68 2 22 141 2 114 3.05e-19 89.4
MS.gene45445.t1 MTR_1g035460 36.585 123 71 3 283 405 187 302 4.56e-19 89.0
MS.gene45445.t1 MTR_3g005495 38.235 102 63 0 3 104 240 341 4.82e-19 89.4
MS.gene45445.t1 MTR_3g005495 36.957 92 58 0 21 112 28 119 5.92e-16 80.1
MS.gene45445.t1 MTR_3g005460 36.364 110 70 0 3 112 22 131 4.95e-19 89.7
MS.gene45445.t1 MTR_3g005460 36.893 103 64 1 3 104 259 361 4.36e-17 83.6
MS.gene45445.t1 MTR_1g021270 25.000 396 234 13 4 392 14 353 5.17e-19 89.7
MS.gene45445.t1 MTR_3g061340 32.857 140 74 3 6 144 12 132 5.43e-19 87.0
MS.gene45445.t1 MTR_1g021440 27.525 396 212 15 11 392 27 361 2.27e-18 86.7
MS.gene45445.t1 MTR_5g044670 35.507 138 88 1 3 139 13 150 3.36e-18 85.5
MS.gene45445.t1 MTR_1g108780 37.405 131 74 4 270 399 178 301 4.66e-18 86.3
MS.gene45445.t1 MTR_1g108780 33.058 121 66 1 21 141 12 117 1.76e-16 81.6
MS.gene45445.t1 MTR_3g061370 31.852 135 83 2 3 137 6 131 9.31e-18 83.6
MS.gene45445.t1 MTR_3g005440 38.235 102 63 0 3 104 239 340 3.56e-17 83.6
MS.gene45445.t1 MTR_3g005440 36.559 93 59 0 20 112 34 126 2.41e-14 75.1
MS.gene45445.t1 MTR_7g050640 35.556 90 58 0 6 95 13 102 1.17e-16 76.3
MS.gene45445.t1 MTR_3g005420 33.981 103 67 1 3 104 18 120 1.48e-15 79.0
MS.gene45445.t1 MTR_3g005420 34.848 132 75 4 264 391 361 485 1.44e-14 75.9
MS.gene45445.t1 MTR_3g005420 37.500 72 45 0 3 74 267 338 3.78e-12 68.2
MS.gene45445.t1 MTR_3g005420 36.538 156 74 9 274 417 138 280 1.39e-11 66.6
MS.gene45445.t1 MTR_6g043890 37.500 112 67 2 6 116 15 124 2.74e-14 73.9
MS.gene45445.t1 MTR_1g035570 38.614 101 56 2 4 104 7 101 1.86e-13 72.0
MS.gene45445.t1 MTR_1g035640 37.624 101 57 2 4 104 7 101 2.08e-13 72.0
MS.gene45445.t1 MTR_3g061220 35.644 101 50 2 6 106 12 97 2.39e-13 66.6
MS.gene45445.t1 MTR_1g021400 38.889 90 55 0 6 95 30 119 1.28e-12 69.3
MS.gene45445.t1 MTR_1g021380 41.176 85 50 0 11 95 26 110 1.29e-12 68.9
MS.gene45445.t1 MTR_1g021350 38.636 88 54 0 9 96 24 111 1.62e-12 68.9
MS.gene45445.t1 MTR_1g021440 40.000 85 51 0 11 95 27 111 3.57e-12 67.4
MS.gene45445.t1 MTR_1g021440 40.000 85 51 0 11 95 27 111 4.24e-12 67.0
MS.gene45445.t1 MTR_1g021320 39.535 86 51 1 10 95 187 271 4.93e-12 68.6
MS.gene45445.t1 MTR_1g021320 37.778 90 56 0 6 95 25 114 3.66e-11 65.9
MS.gene45445.t1 MTR_1g021360 41.026 78 46 0 18 95 194 271 1.16e-11 66.6
MS.gene45445.t1 MTR_1g021360 37.778 90 55 1 6 95 26 114 2.19e-11 65.9
MS.gene45445.t1 MTR_1g021410 38.889 90 54 1 7 95 22 111 3.28e-11 64.7
MS.gene45445.t1 MTR_1g035500 32.143 140 90 3 6 145 25 159 8.00e-11 61.2
MS.gene45445.t1 MTR_1g050845 37.374 99 60 1 6 104 9 105 9.07e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45445.t1 AT3G18990 50.382 393 139 7 1 391 1 339 5.93e-126 368
MS.gene45445.t1 AT3G18990 50.125 399 140 8 1 394 1 345 1.21e-124 366
MS.gene45445.t1 AT1G49480 63.483 178 57 3 216 391 53 224 2.22e-72 227
MS.gene45445.t1 AT1G49480 63.483 178 57 3 216 391 53 224 2.22e-72 227
MS.gene45445.t1 AT1G49480 63.483 178 57 3 216 391 53 224 2.22e-72 227
MS.gene45445.t1 AT4G01580 39.806 103 62 0 2 104 26 128 3.12e-21 91.3
MS.gene45445.t1 AT3G18960 37.864 103 64 0 2 104 26 128 2.07e-20 89.0
MS.gene45445.t1 AT3G18960 37.864 103 64 0 2 104 26 128 2.15e-20 89.4
MS.gene45445.t1 AT1G49475 33.803 142 87 3 2 137 27 167 5.39e-18 82.0
MS.gene45445.t1 AT3G18960 34.524 84 55 0 21 104 8 91 1.30e-13 69.3
MS.gene45445.t1 AT2G16210 34.314 102 62 4 5 102 18 118 8.18e-11 62.0

Find 0 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTATTTATTTTTGTAGT+GGG - 23895:741-760 MS.gene45445:CDS 10.0%
!!! TTATTTATTTATTTTTGTAG+TGG - 23895:740-759 MS.gene45445:CDS 10.0%
!!! TTCGATTTTTTTTTTTTAAA+TGG - 23895:1296-1315 MS.gene45445:intron 10.0%
!!! TTTAAATTTTTAGATTAGAT+GGG - 23895:876-895 MS.gene45445:CDS 10.0%
!! AAAAATTTAAACTTGATGAA+AGG + 23895:867-886 None:intergenic 15.0%
!! AAAATTTAAACTTGATGAAA+GGG + 23895:866-885 None:intergenic 15.0%
!! ATATAATTAATAGTGTACTT+TGG - 23895:1168-1187 MS.gene45445:CDS 15.0%
!! TAAAAAAAAAAAATCGAACT+CGG + 23895:1294-1313 None:intergenic 15.0%
!!! AAAAGAGTCATAAATATTTT+TGG - 23895:908-927 MS.gene45445:CDS 15.0%
!!! AAAGAGTCATAAATATTTTT+GGG - 23895:909-928 MS.gene45445:CDS 15.0%
!!! ATCTTTTGTGTATTATTTTT+TGG - 23895:678-697 MS.gene45445:CDS 15.0%
!!! GTTTAAATTTTTAGATTAGA+TGG - 23895:875-894 MS.gene45445:CDS 15.0%
!! AAAAAAAAAAAATCGAACTC+GGG + 23895:1293-1312 None:intergenic 20.0%
!! ACATTGAAATAGTTTAAATC+AGG - 23895:1263-1282 MS.gene45445:intron 20.0%
!! CTTAGTTATTGTTTATAACT+CGG - 23895:2499-2518 MS.gene45445:intron 20.0%
!! GATAAATTCGAAAAAGATAT+AGG + 23895:1580-1599 None:intergenic 20.0%
!! TAAACTTAATAGCATAAACT+GGG - 23895:2300-2319 MS.gene45445:intron 20.0%
!! TTAAAGTCAAATCATAAAGT+GGG - 23895:960-979 MS.gene45445:intron 20.0%
!!! AAAATCCTTTTTTTTTTGTG+TGG + 23895:1066-1085 None:intergenic 20.0%
!!! ACACAAAAGATTGAATTTTT+AGG + 23895:669-688 None:intergenic 20.0%
!!! TACTTGAAATTAGAGTTTTT+TGG - 23895:1090-1109 MS.gene45445:CDS 20.0%
!!! TTTAAAGTCAAATCATAAAG+TGG - 23895:959-978 MS.gene45445:intron 20.0%
! AAACTTAATAGCATAAACTG+GGG - 23895:2301-2320 MS.gene45445:intron 25.0%
! ATTCTCCACACAAAAAAAAA+AGG - 23895:1058-1077 MS.gene45445:CDS 25.0%
! CAAAAATATTCCATTAGTAC+TGG - 23895:1974-1993 MS.gene45445:CDS 25.0%
! CATGGCAATTTACAAATATT+TGG - 23895:1778-1797 MS.gene45445:CDS 25.0%
! CTAAACTTAATAGCATAAAC+TGG - 23895:2299-2318 MS.gene45445:intron 25.0%
! GAATGAAAAAAAAGTTGTGT+TGG + 23895:2806-2825 None:intergenic 25.0%
! TAAACTCAACTACATTAAAC+TGG + 23895:2396-2415 None:intergenic 25.0%
! TAAAGTCAAATCATAAAGTG+GGG - 23895:961-980 MS.gene45445:intron 25.0%
! TATTTCCTCATAAAATCATC+TGG + 23895:1836-1855 None:intergenic 25.0%
! TGCAATTCACAAATCATATT+AGG + 23895:1806-1825 None:intergenic 25.0%
! TTGAAATAGTTTAAATCAGG+AGG - 23895:1266-1285 MS.gene45445:intron 25.0%
! TTGTTGGTATTCAAATATGA+AGG - 23895:2001-2020 MS.gene45445:intron 25.0%
!! AAAAGATATAGGTTTAGTTC+AGG + 23895:1569-1588 None:intergenic 25.0%
!! AAAAGGTAGACAACAAATTT+TGG - 23895:1924-1943 MS.gene45445:CDS 25.0%
!! GATGATTTTATGAGGAAATA+TGG - 23895:1836-1855 MS.gene45445:CDS 25.0%
!! TCTTACTATTTTCGAAGAAA+TGG - 23895:2126-2145 MS.gene45445:intron 25.0%
!! TTCTTAGATGAATTTTTGCA+TGG - 23895:716-735 MS.gene45445:CDS 25.0%
!!! AAAGGGTTTGATAATTTTTC+TGG - 23895:790-809 MS.gene45445:CDS 25.0%
!!! AAGGGTTTGATAATTTTTCT+GGG - 23895:791-810 MS.gene45445:CDS 25.0%
!!! AATTTTGATAGAGTGAAGAA+AGG - 23895:772-791 MS.gene45445:CDS 25.0%
!!! ATTTTGATAGAGTGAAGAAA+GGG - 23895:773-792 MS.gene45445:CDS 25.0%
!!! TCATAAATATTTTTGGGTCA+AGG - 23895:915-934 MS.gene45445:CDS 25.0%
!!! TGGTGTTTTTTATACTATCA+TGG - 23895:1760-1779 MS.gene45445:CDS 25.0%
!!! TTGCACTTTTTGAAATGAAA+TGG - 23895:1740-1759 MS.gene45445:CDS 25.0%
AATATATGTGTGTTGCATGT+TGG + 23895:1010-1029 None:intergenic 30.0%
AGAACAAGCTTATGAAATGA+AGG + 23895:613-632 None:intergenic 30.0%
AGCATATGTTAGTAAATTGC+TGG + 23895:1484-1503 None:intergenic 30.0%
ATCAAACTTCAAATCTCTGA+TGG - 23895:2924-2943 MS.gene45445:intron 30.0%
TACTGTATTTCGTATTACAG+AGG - 23895:3094-3113 MS.gene45445:intron 30.0%
TCAAACTTCAAATCTCTGAT+GGG - 23895:2925-2944 MS.gene45445:intron 30.0%
TGAAGATTCTGTTGAAATCA+TGG - 23895:2153-2172 MS.gene45445:intron 30.0%
TGATAGTTAATCTCAGATGT+AGG + 23895:2061-2080 None:intergenic 30.0%
TTGTAATAAGTTCGTCGAAT+CGG + 23895:1713-1732 None:intergenic 30.0%
! AATTGTTTCTCACTGTAACT+CGG + 23895:1526-1545 None:intergenic 30.0%
! ATATGATTTGTGAATTGCAG+AGG - 23895:1807-1826 MS.gene45445:CDS 30.0%
! GATTTTATGAGGAAATATGG+TGG - 23895:1839-1858 MS.gene45445:CDS 30.0%
! TTTTACTGGTGGAATTTTTG+AGG - 23895:1128-1147 MS.gene45445:CDS 30.0%
!! AAATGATTTTGCAGCATTGA+TGG + 23895:2703-2722 None:intergenic 30.0%
!!! AACAAATTTTGGTTCCTTGA+TGG - 23895:1935-1954 MS.gene45445:CDS 30.0%
!!! TAACTGCTTTGTTTTGCAAT+AGG + 23895:2207-2226 None:intergenic 30.0%
!!! TTTCGTGGGTTTGTTTTTAT+CGG + 23895:1425-1444 None:intergenic 30.0%
AACCATCTAATCCTTTCTGT+CGG - 23895:2724-2743 MS.gene45445:intron 35.0%
ACGACCCTCCTATTTATATA+GGG - 23895:2755-2774 MS.gene45445:intron 35.0%
AGAAAACTGCTGTAAAGAAG+AGG - 23895:2467-2486 MS.gene45445:intron 35.0%
AGCTTATGAAATGAAGGAGA+AGG + 23895:607-626 None:intergenic 35.0%
CAACAAGTATCCAGTACTAA+TGG + 23895:1987-2006 None:intergenic 35.0%
GAAAGGGAAACAATACAACA+AGG - 23895:1372-1391 MS.gene45445:CDS 35.0%
TAATCAGTTTAGTTGAAGCG+AGG + 23895:3196-3215 None:intergenic 35.0%
TACGACCCTCCTATTTATAT+AGG - 23895:2754-2773 MS.gene45445:intron 35.0%
TATATAAATAGGAGGGTCGT+AGG + 23895:2755-2774 None:intergenic 35.0%
TATGCACCCCCTATATAAAT+AGG + 23895:2766-2785 None:intergenic 35.0%
TTACCCATCGATACCTTATT+TGG + 23895:1450-1469 None:intergenic 35.0%
TTGCAAAACAAAGCAGTTAC+CGG - 23895:2208-2227 MS.gene45445:intron 35.0%
TTTCGCTGGAGAACAATTTA+GGG - 23895:3015-3034 MS.gene45445:intron 35.0%
TTTCGTATTACAGAGGATGA+AGG - 23895:3101-3120 MS.gene45445:intron 35.0%
TTTGCAGAGAAGAACTTGAA+TGG - 23895:2888-2907 MS.gene45445:intron 35.0%
! CATTAGTACTGGATACTTGT+TGG - 23895:1985-2004 MS.gene45445:intron 35.0%
! TACCCATCGATACCTTATTT+GGG + 23895:1449-1468 None:intergenic 35.0%
! TTTATATAGGGGGTGCATAA+TGG - 23895:2767-2786 MS.gene45445:intron 35.0%
! TTTTCGCTGGAGAACAATTT+AGG - 23895:3014-3033 MS.gene45445:intron 35.0%
!! AAACCCAAATAAGGTATCGA+TGG - 23895:1443-1462 MS.gene45445:CDS 35.0%
!! AACCCAAATAAGGTATCGAT+GGG - 23895:1444-1463 MS.gene45445:CDS 35.0%
!! AAGTTCCGTGATTCTGAAAT+TGG - 23895:1670-1689 MS.gene45445:CDS 35.0%
!! ATACCTTATTTGGGTTTTCG+TGG + 23895:1440-1459 None:intergenic 35.0%
!! ATTTTTAGATTAGATGGGCG+TGG - 23895:881-900 MS.gene45445:CDS 35.0%
!! TACCTTATTTGGGTTTTCGT+GGG + 23895:1439-1458 None:intergenic 35.0%
!!! AGAGTTTTTTGGATGACTGA+TGG - 23895:1101-1120 MS.gene45445:CDS 35.0%
!!! GAGTTTTTTGGATGACTGAT+GGG - 23895:1102-1121 MS.gene45445:CDS 35.0%
!!! TTCGTGGGTTTGTTTTTATC+GGG + 23895:1424-1443 None:intergenic 35.0%
AAAAAACTCGTGGCAACGAA+AGG - 23895:1355-1374 MS.gene45445:CDS 40.0%
AAAAACTCGTGGCAACGAAA+GGG - 23895:1356-1375 MS.gene45445:CDS 40.0%
AAACAATTCCCATGCATTGG+AGG - 23895:1538-1557 MS.gene45445:CDS 40.0%
AAACTGGAGACCTATATCTC+TGG + 23895:2380-2399 None:intergenic 40.0%
AACAGCTGAAGAAAGAGAGA+AGG - 23895:2677-2696 MS.gene45445:intron 40.0%
AACCAGTTGACCAGAGATAT+AGG - 23895:2367-2386 MS.gene45445:intron 40.0%
AACCCACGAAAACCCAAATA+AGG - 23895:1434-1453 MS.gene45445:CDS 40.0%
AAGAACTTGAATGGCGTTTC+AGG - 23895:2897-2916 MS.gene45445:intron 40.0%
AATAGCATAAACTGGGGTGA+AGG - 23895:2307-2326 MS.gene45445:intron 40.0%
ACCATCTAATCCTTTCTGTC+GGG - 23895:2725-2744 MS.gene45445:intron 40.0%
ACCTCATCTTCATGTTCAGA+AGG + 23895:2606-2625 None:intergenic 40.0%
ACTTGATGAAAGGGATGACA+AGG + 23895:857-876 None:intergenic 40.0%
AGTAAGTTTATCAGCTGAGC+CGG + 23895:2230-2249 None:intergenic 40.0%
ATAAGTTCGTCGAATCGGTT+TGG + 23895:1708-1727 None:intergenic 40.0%
ATGAGGTAGAAATGCGCAAT+AGG - 23895:2619-2638 MS.gene45445:intron 40.0%
CAAAGCAAGATGGTAGATAC+TGG + 23895:2872-2891 None:intergenic 40.0%
CAAATTCATTCCAGCCATCA+AGG + 23895:1952-1971 None:intergenic 40.0%
CACCCCCTATATAAATAGGA+GGG + 23895:2762-2781 None:intergenic 40.0%
CGACCCTCCTATTTATATAG+GGG - 23895:2756-2775 MS.gene45445:intron 40.0%
CGTTTACCAGTTTCACATGT+TGG + 23895:3157-3176 None:intergenic 40.0%
GACCCTCCTATTTATATAGG+GGG - 23895:2757-2776 MS.gene45445:intron 40.0%
GAGAAACAATTCCCATGCAT+TGG - 23895:1535-1554 MS.gene45445:CDS 40.0%
GCACTGCAGAATCTGTTTAA+TGG - 23895:2274-2293 MS.gene45445:intron 40.0%
GCTGTAAAGAAGAGGAAATC+AGG - 23895:2475-2494 MS.gene45445:intron 40.0%
GCTTGAGTGTTTGTGTGTTA+CGG - 23895:1636-1655 MS.gene45445:CDS 40.0%
GTCAAATCATAAAGTGGGGT+TGG - 23895:965-984 MS.gene45445:intron 40.0%
GTGTGTTGCATGTTGGAAAT+AGG + 23895:1003-1022 None:intergenic 40.0%
GTTACTCTCAAAGTTCCTGA+TGG - 23895:1878-1897 MS.gene45445:CDS 40.0%
GTTGTAACATGAAGGTAGCT+CGG - 23895:1225-1244 MS.gene45445:intron 40.0%
TCATCTTCATGTTCAGAAGG+AGG + 23895:2603-2622 None:intergenic 40.0%
TCCTTCTGAACATGAAGATG+AGG - 23895:2602-2621 MS.gene45445:intron 40.0%
TGTGCTAGGTTGTAACATGA+AGG - 23895:1217-1236 MS.gene45445:intron 40.0%
TTAAACAGATTCTGCAGTGC+TGG + 23895:2274-2293 None:intergenic 40.0%
TTCGCTGGAGAACAATTTAG+GGG - 23895:3016-3035 MS.gene45445:intron 40.0%
TTCTTCTCTGCAAAGCAAGA+TGG + 23895:2882-2901 None:intergenic 40.0%
TTTGCAATAGGCTAGGAGTA+AGG + 23895:2195-2214 None:intergenic 40.0%
! AGTAATGAAGCGTCTCTCTT+TGG - 23895:2097-2116 MS.gene45445:intron 40.0%
! CAAGGTCTCAAGATTAGTCA+TGG - 23895:933-952 MS.gene45445:intron 40.0%
! GGAACTTTGAGAGTAACCAT+TGG + 23895:1875-1894 None:intergenic 40.0%
! GGAGGTGTAACTTATATAGG+CGG + 23895:1400-1419 None:intergenic 40.0%
! GGCTTCCAGATGATTTTATG+AGG - 23895:1828-1847 MS.gene45445:CDS 40.0%
! TAGCTCTACCACCTCTATAA+AGG + 23895:2971-2990 None:intergenic 40.0%
! TGGTGGTGATATTTCTCCAA+TGG - 23895:1856-1875 MS.gene45445:CDS 40.0%
! TGTTGCAGTTCTTTTCCTTG+CGG + 23895:2661-2680 None:intergenic 40.0%
! TTTATGAAAGTGCATCCGCA+AGG - 23895:2643-2662 MS.gene45445:intron 40.0%
!! TTTTGAAAGTGCAGATGTCC+AGG - 23895:2575-2594 MS.gene45445:intron 40.0%
!!! AATTTTGGTTCCTTGATGGC+TGG - 23895:1939-1958 MS.gene45445:CDS 40.0%
!!! GCTTTGTTTTGCAATAGGCT+AGG + 23895:2202-2221 None:intergenic 40.0%
!!! TGACTGATGGGTTGTTTTAC+TGG - 23895:1114-1133 MS.gene45445:CDS 40.0%
AAATCTCTGATGGGAGACAG+TGG - 23895:2934-2953 MS.gene45445:intron 45.0%
ACCCGACAGAAAGGATTAGA+TGG + 23895:2729-2748 None:intergenic 45.0%
CAAGACGCACAAAAAACTCG+TGG - 23895:1345-1364 MS.gene45445:CDS 45.0%
CACTCTTCAAGCTAAGCAAC+TGG - 23895:639-658 MS.gene45445:CDS 45.0%
CTCTGTATGAAGCATGTGCT+AGG - 23895:1203-1222 MS.gene45445:CDS 45.0%
CTGGAGAACAATTTAGGGGA+AGG - 23895:3020-3039 MS.gene45445:intron 45.0%
GAAAGGGATGACAAGGTTTG+AGG + 23895:850-869 None:intergenic 45.0%
GACCTATATCTCTGGTCAAC+TGG + 23895:2372-2391 None:intergenic 45.0%
GCACCCCCTATATAAATAGG+AGG + 23895:2763-2782 None:intergenic 45.0%
GCAGAACCAACATGTGAAAC+TGG - 23895:3148-3167 MS.gene45445:intron 45.0%
GCTTCATTACTTCTTTGCGC+AGG + 23895:2088-2107 None:intergenic 45.0%
GGCAGCCAATTTCAGAATCA+CGG + 23895:1678-1697 None:intergenic 45.0%
GGTAGAGCTAAGTTAAGCCA+GGG - 23895:2981-3000 MS.gene45445:intron 45.0%
GTAGAGCTAAGTTAAGCCAG+GGG - 23895:2982-3001 MS.gene45445:intron 45.0%
GTGGCGTGTAGGAATGAAAA+AGG - 23895:1907-1926 MS.gene45445:CDS 45.0%
TAACATGAAGGTAGCTCGGT+TGG - 23895:1229-1248 MS.gene45445:intron 45.0%
TCCTTCCAGAAATGCCAACT+CGG - 23895:2339-2358 MS.gene45445:intron 45.0%
TGGTAGAGCTAAGTTAAGCC+AGG - 23895:2980-2999 MS.gene45445:intron 45.0%
! CAGTTGCTTAGCTTGAAGAG+TGG + 23895:641-660 None:intergenic 45.0%
! GATGACAAGGTTTGAGGTTG+TGG + 23895:844-863 None:intergenic 45.0%
! GGCGGAGGTGTAACTTATAT+AGG + 23895:1403-1422 None:intergenic 45.0%
! GGTTTGAGGTTGTGGATGAT+TGG + 23895:836-855 None:intergenic 45.0%
! TGCTTAGCTTGAAGAGTGGA+GGG + 23895:637-656 None:intergenic 45.0%
! TTGCTTAGCTTGAAGAGTGG+AGG + 23895:638-657 None:intergenic 45.0%
!! ACATGTTGGTTCTGCTGCAA+CGG + 23895:3143-3162 None:intergenic 45.0%
!! TAGCTCGGTTGGTGAGTTAA+GGG - 23895:1240-1259 MS.gene45445:intron 45.0%
!! TCGAATCGGTTTGGCAAGAT+TGG + 23895:1699-1718 None:intergenic 45.0%
!!! CTGATGGGTTGTTTTACTGG+TGG - 23895:1117-1136 MS.gene45445:CDS 45.0%
!!! GTGGGTTTGTTTTTATCGGG+CGG + 23895:1421-1440 None:intergenic 45.0%
AACGAAGGAAGTAGTGCTGC+AGG - 23895:3070-3089 MS.gene45445:intron 50.0%
AGCATAAACTGGGGTGAAGG+TGG - 23895:2310-2329 MS.gene45445:intron 50.0%
AGGCTAGGAGTAAGGTTCGT+AGG + 23895:2187-2206 None:intergenic 50.0%
AGGTTCCTCCTCCAATGCAT+GGG + 23895:1549-1568 None:intergenic 50.0%
CAACTGGTTGTCTACCGAGT+TGG + 23895:2356-2375 None:intergenic 50.0%
CAATTCCCATGCATTGGAGG+AGG - 23895:1541-1560 MS.gene45445:CDS 50.0%
CATGTTCAGAAGGAGGTTCC+TGG + 23895:2596-2615 None:intergenic 50.0%
CCAGTTCGCTGCCTTTATAG+AGG - 23895:2957-2976 MS.gene45445:intron 50.0%
CCTCTATAAAGGCAGCGAAC+TGG + 23895:2960-2979 None:intergenic 50.0%
CGATGTGTGTGTGTTTGAGC+TGG - 23895:3043-3062 MS.gene45445:intron 50.0%
GAAGCGAGGTGATGCTGAAA+CGG + 23895:3182-3201 None:intergenic 50.0%
GCATAAACTGGGGTGAAGGT+GGG - 23895:2311-2330 MS.gene45445:intron 50.0%
GTTCGCTGCCTTTATAGAGG+TGG - 23895:2960-2979 MS.gene45445:intron 50.0%
GTTTGAGCTGGTTGCAACGA+AGG - 23895:3055-3074 MS.gene45445:intron 50.0%
TGAAGAGTTGAAGTTGCGCG+CGG - 23895:2426-2445 MS.gene45445:intron 50.0%
! AACAGATTCTGCAGTGCTGG+AGG + 23895:2271-2290 None:intergenic 50.0%
! ACCGAGTTGGCATTTCTGGA+AGG + 23895:2343-2362 None:intergenic 50.0%
! GTCTACCGAGTTGGCATTTC+TGG + 23895:2347-2366 None:intergenic 50.0%
!! GTAGCTCGGTTGGTGAGTTA+AGG - 23895:1239-1258 MS.gene45445:intron 50.0%
!!! GGTTTGTTTTTATCGGGCGG+AGG + 23895:1418-1437 None:intergenic 50.0%
AAGTTCCTGATGGCAGTGCG+TGG - 23895:1888-1907 MS.gene45445:CDS 55.0%
CAGGTTCCTCCTCCAATGCA+TGG + 23895:1550-1569 None:intergenic 55.0%
CGTAGGACAACCCGACAGAA+AGG + 23895:2738-2757 None:intergenic 55.0%
GAGCTAAGTTAAGCCAGGGG+TGG - 23895:2985-3004 MS.gene45445:intron 55.0%
GCGAAAACTCATACCACCCC+TGG + 23895:3001-3020 None:intergenic 55.0%
! AGATTCTGCAGTGCTGGAGG+CGG + 23895:2268-2287 None:intergenic 55.0%
! GGGGTGGTATGAGTTTTCGC+TGG - 23895:3001-3020 MS.gene45445:intron 55.0%
GCGCGCGGCTACTGATGAAA+AGG - 23895:2441-2460 MS.gene45445:intron 60.0%
GGTTCTGCTGCAACGGCTGT+GGG + 23895:3136-3155 None:intergenic 60.0%
TGCAACGGCTGTGGGCTCAA+CGG + 23895:3128-3147 None:intergenic 60.0%
! TGGTTCTGCTGCAACGGCTG+TGG + 23895:3137-3156 None:intergenic 60.0%
ACACGCCACGCACTGCCATC+AGG + 23895:1896-1915 None:intergenic 65.0%
GATGGCAGTGCGTGGCGTGT+AGG - 23895:1896-1915 MS.gene45445:CDS 65.0%
GGAGGCGGACGAGACTTGCA+AGG + 23895:2253-2272 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
23895 gene 601 3223 601 ID=MS.gene45445
23895 mRNA 601 3223 601 ID=MS.gene45445.t1;Parent=MS.gene45445
23895 exon 3164 3223 3164 ID=MS.gene45445.t1.exon1;Parent=MS.gene45445.t1
23895 CDS 3164 3223 3164 ID=cds.MS.gene45445.t1;Parent=MS.gene45445.t1
23895 exon 1328 1997 1328 ID=MS.gene45445.t1.exon2;Parent=MS.gene45445.t1
23895 CDS 1328 1997 1328 ID=cds.MS.gene45445.t1;Parent=MS.gene45445.t1
23895 exon 1036 1235 1036 ID=MS.gene45445.t1.exon3;Parent=MS.gene45445.t1
23895 CDS 1036 1235 1036 ID=cds.MS.gene45445.t1;Parent=MS.gene45445.t1
23895 exon 601 951 601 ID=MS.gene45445.t1.exon4;Parent=MS.gene45445.t1
23895 CDS 601 951 601 ID=cds.MS.gene45445.t1;Parent=MS.gene45445.t1
Gene Sequence

>MS.gene45445

ATGCCTTCTCCTTCATTTCATAAGCTTGTTCTACCCTCCACTCTTCAAGCTAAGCAACTGGTATACCTAAAAATTCAATCTTTTGTGTATTATTTTTTGGTTTTTTGACTCTATTTTCTTAGATGAATTTTTGCATGGTTTATTTATTTATTTTTGTAGTGGGTTTATGAGAATTTTGATAGAGTGAAGAAAGGGTTTGATAATTTTTCTGGGTTTTTACTTTTTATTTTCACCAATCATCCACAACCTCAAACCTTGTCATCCCTTTCATCAAGTTTAAATTTTTAGATTAGATGGGCGTGGAAAAAAAAGAGTCATAAATATTTTTGGGTCAAGGTCTCAAGATTAGTCATGGACTTTTAAAGTCAAATCATAAAGTGGGGTTGGCTAATTTTATGTCCTATTTCCAACATGCAACACACATATATTTAAGTTTTCTCAAATTTATTAATTGAAAATTCTCCACACAAAAAAAAAAGGATTTTTTTCTACTTGAAATTAGAGTTTTTTGGATGACTGATGGGTTGTTTTACTGGTGGAATTTTTGAGGAAATTTATGCTGAGTAAATATAATTAATAGTGTACTTTGGTTTAGAGATCTACTCTGTATGAAGCATGTGCTAGGTTGTAACATGAAGGTAGCTCGGTTGGTGAGTTAAGGGACATTGAAATAGTTTAAATCAGGAGGTCCCGAGTTCGATTTTTTTTTTTTAAATGGCTAATTTTATTCTCGACGAGTTTATGCAAGACGCACAAAAAACTCGTGGCAACGAAAGGGAAACAATACAACAAGGTGCCGCCTATATAAGTTACACCTCCGCCCGATAAAAACAAACCCACGAAAACCCAAATAAGGTATCGATGGGTAAAACTAATATAACCAGCAATTTACTAACATATGCTTATAAAAAAAATGCATTAGCCGAGTTACAGTGAGAAACAATTCCCATGCATTGGAGGAGGAACCTGAACTAAACCTATATCTTTTTCGAATTTATCTTTGCAATTAGAATTTTAGCTTTGTTTGTCAGATTAGCTTGAGTGTTTGTGTGTTACGGTGCAATTTATGAAGTTCCGTGATTCTGAAATTGGCTGCCAATCTTGCCAAACCGATTCGACGAACTTATTACAATAGAACATTGCACTTTTTGAAATGAAATGGTGTTTTTTATACTATCATGGCAATTTACAAATATTTGGAACCTAATATGATTTGTGAATTGCAGAGGCTTCCAGATGATTTTATGAGGAAATATGGTGGTGATATTTCTCCAATGGTTACTCTCAAAGTTCCTGATGGCAGTGCGTGGCGTGTAGGAATGAAAAAGGTAGACAACAAATTTTGGTTCCTTGATGGCTGGAATGAATTTGTTCAAAAATATTCCATTAGTACTGGATACTTGTTGGTATTCAAATATGAAGGAAAGTCGTATTTCACTGTTAATATTTTTAGTTTGCCTACATCTGAGATTAACTATCAATCACCTGCGCAAAGAAGTAATGAAGCGTCTCTCTTTGGAAAACGTCTTACTATTTTCGAAGAAATGGAAGATGAAGATTCTGTTGAAATCATGGACTCGTCGCCTACGAACCTTACTCCTAGCCTATTGCAAAACAAAGCAGTTACCGGCTCAGCTGATAAACTTACTCCTTGCAAGTCTCGTCCGCCTCCAGCACTGCAGAATCTGTTTAATGGATCTAAACTTAATAGCATAAACTGGGGTGAAGGTGGGAATACTCCTTCCAGAAATGCCAACTCGGTAGACAACCAGTTGACCAGAGATATAGGTCTCCAGTTTAATGTAGTTGAGTTTAAAAAGTCTAATGAAGAGTTGAAGTTGCGCGCGGCTACTGATGAAAAGGTTAAGAAAACTGCTGTAAAGAAGAGGAAATCAGGTCTTAGTTATTGTTTATAACTCGGTTTTCTTTATCTGATCTCGTTATCTGAATTGAAATTTATAATCAAAATGCTATTTTTGAAAGTGCAGATGTCCAGGAACCTCCTTCTGAACATGAAGATGAGGTAGAAATGCGCAATAGGTTTTATGAAAGTGCATCCGCAAGGAAAAGAACTGCAACAGCTGAAGAAAGAGAGAAGGCCATCAATGCTGCAAAATCATTTGAACCATCTAATCCTTTCTGTCGGGTTGTCCTACGACCCTCCTATTTATATAGGGGGTGCATAATGGTGAATCATTGAATCCAACACAACTTTTTTTTCATTCTCTTATAACATTTTGATCTTGCATGCTAAATTCTTTCTGTTTTCCAGTATCTACCATCTTGCTTTGCAGAGAAGAACTTGAATGGCGTTTCAGGAATTATCAAACTTCAAATCTCTGATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGAGGTGGTAGAGCTAAGTTAAGCCAGGGGTGGTATGAGTTTTCGCTGGAGAACAATTTAGGGGAAGGCGATGTGTGTGTGTTTGAGCTGGTTGCAACGAAGGAAGTAGTGCTGCAGGTTACTGTATTTCGTATTACAGAGGATGAAGGACCGTTGAGCCCACAGCCGTTGCAGCAGAACCAACATGTGAAACTGGTAAACGTTCCGTTTCAGCATCACCTCGCTTCAACTAAACTGATTAGAAATTAA

Protein sequence

>MS.gene45445.t1

MPSPSFHKLVLPSTLQAKQLRLPDDFMRKYGGDISPMVTLKVPDGSAWRVGMKKVDNKFWFLDGWNEFVQKYSISTGYLLVFKYEGKSYFTVNIFSLPTSEINYQSPAQRSNEASLFGKRLTIFEEMEDEDSVEIMDSSPTNLTPSLLQNKAVTGSADKLTPCKSRPPPALQNLFNGSKLNSINWGEGGNTPSRNANSVDNQLTRDIGLQFNVVEFKKSNEELKLRAATDEKVKKTAVKKRKSDVQEPPSEHEDEVEMRNRFYESASARKRTATAEEREKAINAAKSFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGIIKLQISDGRQWPVRCLYRGGRAKLSQGWYEFSLENNLGEGDVCVFELVATKEVVLQVTVFRITEDEGPLSPQPLQQNQHVKLVNVPFQHHLASTKLIRN