Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45445.t1 | XP_003606842.1 | 96.3 | 429 | 13 | 1 | 1 | 426 | 1 | 429 | 5.30E-233 | 816.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45445.t1 | Q8L3W1 | 50.4 | 393 | 139 | 7 | 1 | 391 | 1 | 339 | 6.9e-96 | 352.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45445.t1 | G7JEY1 | 96.3 | 429 | 13 | 1 | 1 | 426 | 1 | 429 | 3.9e-233 | 816.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene45445.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049222 | MS.gene45445 | -0.820996 | 5.11E-53 | -1.69E-46 |
MS.gene049298 | MS.gene45445 | 0.82307 | 1.69E-53 | -1.69E-46 |
MS.gene049633 | MS.gene45445 | -0.817854 | 2.66E-52 | -1.69E-46 |
MS.gene050170 | MS.gene45445 | -0.813713 | 2.23E-51 | -1.69E-46 |
MS.gene050225 | MS.gene45445 | 0.810306 | 1.23E-50 | -1.69E-46 |
MS.gene050323 | MS.gene45445 | -0.819252 | 1.28E-52 | -1.69E-46 |
MS.gene050338 | MS.gene45445 | 0.812251 | 4.66E-51 | -1.69E-46 |
MS.gene050444 | MS.gene45445 | -0.830209 | 3.34E-55 | -1.69E-46 |
MS.gene050790 | MS.gene45445 | 0.823137 | 1.63E-53 | -1.69E-46 |
MS.gene05080 | MS.gene45445 | -0.80286 | 4.59E-49 | -1.69E-46 |
MS.gene050868 | MS.gene45445 | -0.805535 | 1.27E-49 | -1.69E-46 |
MS.gene050871 | MS.gene45445 | -0.802572 | 5.27E-49 | -1.69E-46 |
MS.gene050904 | MS.gene45445 | -0.839089 | 1.95E-57 | -1.69E-46 |
MS.gene051317 | MS.gene45445 | -0.846756 | 1.78E-59 | -1.69E-46 |
MS.gene051838 | MS.gene45445 | -0.825512 | 4.50E-54 | -1.69E-46 |
MS.gene053108 | MS.gene45445 | 0.887504 | 1.35E-72 | -1.69E-46 |
MS.gene053776 | MS.gene45445 | 0.811688 | 6.18E-51 | -1.69E-46 |
MS.gene054706 | MS.gene45445 | 0.809962 | 1.46E-50 | -1.69E-46 |
MS.gene05470 | MS.gene45445 | -0.81019 | 1.30E-50 | -1.69E-46 |
MS.gene054941 | MS.gene45445 | 0.833854 | 4.20E-56 | -1.69E-46 |
MS.gene054999 | MS.gene45445 | 0.806099 | 9.70E-50 | -1.69E-46 |
MS.gene055577 | MS.gene45445 | -0.800147 | 1.65E-48 | -1.69E-46 |
MS.gene055748 | MS.gene45445 | -0.818383 | 2.02E-52 | -1.69E-46 |
MS.gene055751 | MS.gene45445 | -0.817555 | 3.10E-52 | -1.69E-46 |
MS.gene05589 | MS.gene45445 | -0.823811 | 1.13E-53 | -1.69E-46 |
MS.gene056387 | MS.gene45445 | -0.858374 | 8.61E-63 | -1.69E-46 |
MS.gene056504 | MS.gene45445 | -0.809672 | 1.69E-50 | -1.69E-46 |
MS.gene056583 | MS.gene45445 | 0.852478 | 4.50E-61 | -1.69E-46 |
MS.gene056618 | MS.gene45445 | 0.966575 | 4.19E-126 | -1.69E-46 |
MS.gene056678 | MS.gene45445 | 0.800886 | 1.17E-48 | -1.69E-46 |
MS.gene057101 | MS.gene45445 | 0.818043 | 2.41E-52 | -1.69E-46 |
MS.gene058128 | MS.gene45445 | 0.808581 | 2.89E-50 | -1.69E-46 |
MS.gene058334 | MS.gene45445 | 0.819475 | 1.14E-52 | -1.69E-46 |
MS.gene058853 | MS.gene45445 | 0.805713 | 1.17E-49 | -1.69E-46 |
MS.gene05926 | MS.gene45445 | 0.815556 | 8.70E-52 | -1.69E-46 |
MS.gene059526 | MS.gene45445 | 0.818565 | 1.83E-52 | -1.69E-46 |
MS.gene059905 | MS.gene45445 | 0.810178 | 1.31E-50 | -1.69E-46 |
MS.gene06042 | MS.gene45445 | 0.811006 | 8.68E-51 | -1.69E-46 |
MS.gene060762 | MS.gene45445 | -0.824193 | 9.22E-54 | -1.69E-46 |
MS.gene060823 | MS.gene45445 | 0.815235 | 1.03E-51 | -1.69E-46 |
MS.gene060982 | MS.gene45445 | -0.80991 | 1.50E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45445.t1 | MTR_4g068320 | 96.270 | 429 | 13 | 1 | 1 | 426 | 1 | 429 | 0.0 | 850 |
MS.gene45445.t1 | MTR_1g034240 | 61.785 | 437 | 149 | 7 | 2 | 426 | 3 | 433 | 0.0 | 546 |
MS.gene45445.t1 | MTR_1g034210 | 47.475 | 396 | 173 | 7 | 4 | 397 | 5 | 367 | 5.11e-115 | 341 |
MS.gene45445.t1 | MTR_1g034210 | 45.042 | 353 | 159 | 7 | 4 | 354 | 5 | 324 | 4.90e-91 | 278 |
MS.gene45445.t1 | MTR_3g005480 | 35.971 | 139 | 84 | 1 | 3 | 141 | 18 | 151 | 3.14e-24 | 101 |
MS.gene45445.t1 | MTR_3g005480 | 37.241 | 145 | 71 | 6 | 257 | 391 | 129 | 263 | 6.97e-16 | 77.8 |
MS.gene45445.t1 | MTR_5g070440 | 42.157 | 102 | 59 | 0 | 3 | 104 | 18 | 119 | 1.84e-23 | 99.8 |
MS.gene45445.t1 | MTR_5g070440 | 36.170 | 141 | 69 | 4 | 263 | 388 | 134 | 268 | 2.10e-14 | 73.6 |
MS.gene45445.t1 | MTR_3g005490 | 40.000 | 110 | 66 | 0 | 3 | 112 | 18 | 127 | 1.16e-22 | 97.1 |
MS.gene45445.t1 | MTR_3g005490 | 35.821 | 134 | 70 | 5 | 267 | 391 | 136 | 262 | 1.32e-13 | 70.9 |
MS.gene45445.t1 | MTR_3g061290 | 37.778 | 135 | 74 | 2 | 6 | 140 | 12 | 136 | 2.01e-22 | 94.7 |
MS.gene45445.t1 | MTR_8g103940 | 40.741 | 108 | 64 | 0 | 6 | 113 | 39 | 146 | 5.68e-22 | 98.2 |
MS.gene45445.t1 | MTR_8g103940 | 38.843 | 121 | 66 | 5 | 280 | 399 | 228 | 341 | 1.31e-17 | 85.1 |
MS.gene45445.t1 | MTR_7g050720 | 40.909 | 110 | 63 | 1 | 1 | 110 | 5 | 112 | 6.89e-22 | 95.9 |
MS.gene45445.t1 | MTR_7g050720 | 35.115 | 131 | 74 | 4 | 268 | 388 | 186 | 315 | 3.65e-14 | 73.6 |
MS.gene45445.t1 | MTR_7g050560 | 41.905 | 105 | 59 | 1 | 6 | 110 | 13 | 115 | 6.98e-22 | 95.9 |
MS.gene45445.t1 | MTR_7g050560 | 30.303 | 132 | 85 | 3 | 268 | 393 | 165 | 295 | 2.21e-11 | 65.1 |
MS.gene45445.t1 | MTR_3g061310 | 36.364 | 132 | 74 | 2 | 6 | 137 | 12 | 133 | 7.17e-22 | 95.5 |
MS.gene45445.t1 | MTR_3g061350 | 36.364 | 132 | 75 | 2 | 6 | 137 | 12 | 134 | 9.35e-22 | 95.1 |
MS.gene45445.t1 | MTR_7g050710 | 41.414 | 99 | 58 | 0 | 6 | 104 | 13 | 111 | 1.55e-21 | 95.1 |
MS.gene45445.t1 | MTR_7g050710 | 34.848 | 132 | 78 | 2 | 270 | 393 | 181 | 312 | 9.17e-15 | 75.5 |
MS.gene45445.t1 | MTR_3g061320 | 35.606 | 132 | 75 | 2 | 6 | 137 | 12 | 133 | 9.82e-21 | 92.0 |
MS.gene45445.t1 | MTR_3g098790 | 38.393 | 112 | 67 | 1 | 6 | 117 | 13 | 122 | 1.65e-20 | 92.4 |
MS.gene45445.t1 | MTR_3g098790 | 36.585 | 123 | 72 | 2 | 277 | 393 | 182 | 304 | 8.45e-18 | 84.3 |
MS.gene45445.t1 | MTR_1g021330 | 24.812 | 399 | 245 | 8 | 18 | 412 | 38 | 385 | 2.20e-20 | 92.8 |
MS.gene45445.t1 | MTR_3g005420 | 41.176 | 102 | 60 | 0 | 3 | 104 | 286 | 387 | 3.75e-20 | 93.2 |
MS.gene45445.t1 | MTR_3g005420 | 33.981 | 103 | 67 | 1 | 3 | 104 | 37 | 139 | 1.61e-15 | 79.0 |
MS.gene45445.t1 | MTR_3g005420 | 34.848 | 132 | 75 | 4 | 264 | 391 | 415 | 539 | 1.61e-14 | 75.9 |
MS.gene45445.t1 | MTR_3g005420 | 36.538 | 156 | 74 | 9 | 274 | 417 | 157 | 299 | 1.83e-11 | 66.2 |
MS.gene45445.t1 | MTR_3g061330 | 34.848 | 132 | 76 | 2 | 6 | 137 | 12 | 133 | 4.50e-20 | 89.4 |
MS.gene45445.t1 | MTR_7g050580 | 38.095 | 105 | 63 | 1 | 6 | 110 | 13 | 115 | 6.07e-20 | 90.5 |
MS.gene45445.t1 | MTR_7g050580 | 34.127 | 126 | 77 | 2 | 274 | 393 | 170 | 295 | 9.12e-14 | 72.0 |
MS.gene45445.t1 | MTR_1g021440 | 28.000 | 400 | 223 | 16 | 11 | 392 | 27 | 379 | 7.61e-20 | 91.3 |
MS.gene45445.t1 | MTR_7g050590 | 41.667 | 96 | 54 | 1 | 22 | 115 | 2 | 97 | 1.11e-19 | 89.4 |
MS.gene45445.t1 | MTR_1g035460 | 37.500 | 120 | 68 | 2 | 22 | 141 | 2 | 114 | 3.05e-19 | 89.4 |
MS.gene45445.t1 | MTR_1g035460 | 36.585 | 123 | 71 | 3 | 283 | 405 | 187 | 302 | 4.56e-19 | 89.0 |
MS.gene45445.t1 | MTR_3g005495 | 38.235 | 102 | 63 | 0 | 3 | 104 | 240 | 341 | 4.82e-19 | 89.4 |
MS.gene45445.t1 | MTR_3g005495 | 36.957 | 92 | 58 | 0 | 21 | 112 | 28 | 119 | 5.92e-16 | 80.1 |
MS.gene45445.t1 | MTR_3g005460 | 36.364 | 110 | 70 | 0 | 3 | 112 | 22 | 131 | 4.95e-19 | 89.7 |
MS.gene45445.t1 | MTR_3g005460 | 36.893 | 103 | 64 | 1 | 3 | 104 | 259 | 361 | 4.36e-17 | 83.6 |
MS.gene45445.t1 | MTR_1g021270 | 25.000 | 396 | 234 | 13 | 4 | 392 | 14 | 353 | 5.17e-19 | 89.7 |
MS.gene45445.t1 | MTR_3g061340 | 32.857 | 140 | 74 | 3 | 6 | 144 | 12 | 132 | 5.43e-19 | 87.0 |
MS.gene45445.t1 | MTR_1g021440 | 27.525 | 396 | 212 | 15 | 11 | 392 | 27 | 361 | 2.27e-18 | 86.7 |
MS.gene45445.t1 | MTR_5g044670 | 35.507 | 138 | 88 | 1 | 3 | 139 | 13 | 150 | 3.36e-18 | 85.5 |
MS.gene45445.t1 | MTR_1g108780 | 37.405 | 131 | 74 | 4 | 270 | 399 | 178 | 301 | 4.66e-18 | 86.3 |
MS.gene45445.t1 | MTR_1g108780 | 33.058 | 121 | 66 | 1 | 21 | 141 | 12 | 117 | 1.76e-16 | 81.6 |
MS.gene45445.t1 | MTR_3g061370 | 31.852 | 135 | 83 | 2 | 3 | 137 | 6 | 131 | 9.31e-18 | 83.6 |
MS.gene45445.t1 | MTR_3g005440 | 38.235 | 102 | 63 | 0 | 3 | 104 | 239 | 340 | 3.56e-17 | 83.6 |
MS.gene45445.t1 | MTR_3g005440 | 36.559 | 93 | 59 | 0 | 20 | 112 | 34 | 126 | 2.41e-14 | 75.1 |
MS.gene45445.t1 | MTR_7g050640 | 35.556 | 90 | 58 | 0 | 6 | 95 | 13 | 102 | 1.17e-16 | 76.3 |
MS.gene45445.t1 | MTR_3g005420 | 33.981 | 103 | 67 | 1 | 3 | 104 | 18 | 120 | 1.48e-15 | 79.0 |
MS.gene45445.t1 | MTR_3g005420 | 34.848 | 132 | 75 | 4 | 264 | 391 | 361 | 485 | 1.44e-14 | 75.9 |
MS.gene45445.t1 | MTR_3g005420 | 37.500 | 72 | 45 | 0 | 3 | 74 | 267 | 338 | 3.78e-12 | 68.2 |
MS.gene45445.t1 | MTR_3g005420 | 36.538 | 156 | 74 | 9 | 274 | 417 | 138 | 280 | 1.39e-11 | 66.6 |
MS.gene45445.t1 | MTR_6g043890 | 37.500 | 112 | 67 | 2 | 6 | 116 | 15 | 124 | 2.74e-14 | 73.9 |
MS.gene45445.t1 | MTR_1g035570 | 38.614 | 101 | 56 | 2 | 4 | 104 | 7 | 101 | 1.86e-13 | 72.0 |
MS.gene45445.t1 | MTR_1g035640 | 37.624 | 101 | 57 | 2 | 4 | 104 | 7 | 101 | 2.08e-13 | 72.0 |
MS.gene45445.t1 | MTR_3g061220 | 35.644 | 101 | 50 | 2 | 6 | 106 | 12 | 97 | 2.39e-13 | 66.6 |
MS.gene45445.t1 | MTR_1g021400 | 38.889 | 90 | 55 | 0 | 6 | 95 | 30 | 119 | 1.28e-12 | 69.3 |
MS.gene45445.t1 | MTR_1g021380 | 41.176 | 85 | 50 | 0 | 11 | 95 | 26 | 110 | 1.29e-12 | 68.9 |
MS.gene45445.t1 | MTR_1g021350 | 38.636 | 88 | 54 | 0 | 9 | 96 | 24 | 111 | 1.62e-12 | 68.9 |
MS.gene45445.t1 | MTR_1g021440 | 40.000 | 85 | 51 | 0 | 11 | 95 | 27 | 111 | 3.57e-12 | 67.4 |
MS.gene45445.t1 | MTR_1g021440 | 40.000 | 85 | 51 | 0 | 11 | 95 | 27 | 111 | 4.24e-12 | 67.0 |
MS.gene45445.t1 | MTR_1g021320 | 39.535 | 86 | 51 | 1 | 10 | 95 | 187 | 271 | 4.93e-12 | 68.6 |
MS.gene45445.t1 | MTR_1g021320 | 37.778 | 90 | 56 | 0 | 6 | 95 | 25 | 114 | 3.66e-11 | 65.9 |
MS.gene45445.t1 | MTR_1g021360 | 41.026 | 78 | 46 | 0 | 18 | 95 | 194 | 271 | 1.16e-11 | 66.6 |
MS.gene45445.t1 | MTR_1g021360 | 37.778 | 90 | 55 | 1 | 6 | 95 | 26 | 114 | 2.19e-11 | 65.9 |
MS.gene45445.t1 | MTR_1g021410 | 38.889 | 90 | 54 | 1 | 7 | 95 | 22 | 111 | 3.28e-11 | 64.7 |
MS.gene45445.t1 | MTR_1g035500 | 32.143 | 140 | 90 | 3 | 6 | 145 | 25 | 159 | 8.00e-11 | 61.2 |
MS.gene45445.t1 | MTR_1g050845 | 37.374 | 99 | 60 | 1 | 6 | 104 | 9 | 105 | 9.07e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45445.t1 | AT3G18990 | 50.382 | 393 | 139 | 7 | 1 | 391 | 1 | 339 | 5.93e-126 | 368 |
MS.gene45445.t1 | AT3G18990 | 50.125 | 399 | 140 | 8 | 1 | 394 | 1 | 345 | 1.21e-124 | 366 |
MS.gene45445.t1 | AT1G49480 | 63.483 | 178 | 57 | 3 | 216 | 391 | 53 | 224 | 2.22e-72 | 227 |
MS.gene45445.t1 | AT1G49480 | 63.483 | 178 | 57 | 3 | 216 | 391 | 53 | 224 | 2.22e-72 | 227 |
MS.gene45445.t1 | AT1G49480 | 63.483 | 178 | 57 | 3 | 216 | 391 | 53 | 224 | 2.22e-72 | 227 |
MS.gene45445.t1 | AT4G01580 | 39.806 | 103 | 62 | 0 | 2 | 104 | 26 | 128 | 3.12e-21 | 91.3 |
MS.gene45445.t1 | AT3G18960 | 37.864 | 103 | 64 | 0 | 2 | 104 | 26 | 128 | 2.07e-20 | 89.0 |
MS.gene45445.t1 | AT3G18960 | 37.864 | 103 | 64 | 0 | 2 | 104 | 26 | 128 | 2.15e-20 | 89.4 |
MS.gene45445.t1 | AT1G49475 | 33.803 | 142 | 87 | 3 | 2 | 137 | 27 | 167 | 5.39e-18 | 82.0 |
MS.gene45445.t1 | AT3G18960 | 34.524 | 84 | 55 | 0 | 21 | 104 | 8 | 91 | 1.30e-13 | 69.3 |
MS.gene45445.t1 | AT2G16210 | 34.314 | 102 | 62 | 4 | 5 | 102 | 18 | 118 | 8.18e-11 | 62.0 |
Find 0 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTATTTATTTTTGTAGT+GGG | - | 23895:741-760 | MS.gene45445:CDS | 10.0% |
!!! | TTATTTATTTATTTTTGTAG+TGG | - | 23895:740-759 | MS.gene45445:CDS | 10.0% |
!!! | TTCGATTTTTTTTTTTTAAA+TGG | - | 23895:1296-1315 | MS.gene45445:intron | 10.0% |
!!! | TTTAAATTTTTAGATTAGAT+GGG | - | 23895:876-895 | MS.gene45445:CDS | 10.0% |
!! | AAAAATTTAAACTTGATGAA+AGG | + | 23895:867-886 | None:intergenic | 15.0% |
!! | AAAATTTAAACTTGATGAAA+GGG | + | 23895:866-885 | None:intergenic | 15.0% |
!! | ATATAATTAATAGTGTACTT+TGG | - | 23895:1168-1187 | MS.gene45445:CDS | 15.0% |
!! | TAAAAAAAAAAAATCGAACT+CGG | + | 23895:1294-1313 | None:intergenic | 15.0% |
!!! | AAAAGAGTCATAAATATTTT+TGG | - | 23895:908-927 | MS.gene45445:CDS | 15.0% |
!!! | AAAGAGTCATAAATATTTTT+GGG | - | 23895:909-928 | MS.gene45445:CDS | 15.0% |
!!! | ATCTTTTGTGTATTATTTTT+TGG | - | 23895:678-697 | MS.gene45445:CDS | 15.0% |
!!! | GTTTAAATTTTTAGATTAGA+TGG | - | 23895:875-894 | MS.gene45445:CDS | 15.0% |
!! | AAAAAAAAAAAATCGAACTC+GGG | + | 23895:1293-1312 | None:intergenic | 20.0% |
!! | ACATTGAAATAGTTTAAATC+AGG | - | 23895:1263-1282 | MS.gene45445:intron | 20.0% |
!! | CTTAGTTATTGTTTATAACT+CGG | - | 23895:2499-2518 | MS.gene45445:intron | 20.0% |
!! | GATAAATTCGAAAAAGATAT+AGG | + | 23895:1580-1599 | None:intergenic | 20.0% |
!! | TAAACTTAATAGCATAAACT+GGG | - | 23895:2300-2319 | MS.gene45445:intron | 20.0% |
!! | TTAAAGTCAAATCATAAAGT+GGG | - | 23895:960-979 | MS.gene45445:intron | 20.0% |
!!! | AAAATCCTTTTTTTTTTGTG+TGG | + | 23895:1066-1085 | None:intergenic | 20.0% |
!!! | ACACAAAAGATTGAATTTTT+AGG | + | 23895:669-688 | None:intergenic | 20.0% |
!!! | TACTTGAAATTAGAGTTTTT+TGG | - | 23895:1090-1109 | MS.gene45445:CDS | 20.0% |
!!! | TTTAAAGTCAAATCATAAAG+TGG | - | 23895:959-978 | MS.gene45445:intron | 20.0% |
! | AAACTTAATAGCATAAACTG+GGG | - | 23895:2301-2320 | MS.gene45445:intron | 25.0% |
! | ATTCTCCACACAAAAAAAAA+AGG | - | 23895:1058-1077 | MS.gene45445:CDS | 25.0% |
! | CAAAAATATTCCATTAGTAC+TGG | - | 23895:1974-1993 | MS.gene45445:CDS | 25.0% |
! | CATGGCAATTTACAAATATT+TGG | - | 23895:1778-1797 | MS.gene45445:CDS | 25.0% |
! | CTAAACTTAATAGCATAAAC+TGG | - | 23895:2299-2318 | MS.gene45445:intron | 25.0% |
! | GAATGAAAAAAAAGTTGTGT+TGG | + | 23895:2806-2825 | None:intergenic | 25.0% |
! | TAAACTCAACTACATTAAAC+TGG | + | 23895:2396-2415 | None:intergenic | 25.0% |
! | TAAAGTCAAATCATAAAGTG+GGG | - | 23895:961-980 | MS.gene45445:intron | 25.0% |
! | TATTTCCTCATAAAATCATC+TGG | + | 23895:1836-1855 | None:intergenic | 25.0% |
! | TGCAATTCACAAATCATATT+AGG | + | 23895:1806-1825 | None:intergenic | 25.0% |
! | TTGAAATAGTTTAAATCAGG+AGG | - | 23895:1266-1285 | MS.gene45445:intron | 25.0% |
! | TTGTTGGTATTCAAATATGA+AGG | - | 23895:2001-2020 | MS.gene45445:intron | 25.0% |
!! | AAAAGATATAGGTTTAGTTC+AGG | + | 23895:1569-1588 | None:intergenic | 25.0% |
!! | AAAAGGTAGACAACAAATTT+TGG | - | 23895:1924-1943 | MS.gene45445:CDS | 25.0% |
!! | GATGATTTTATGAGGAAATA+TGG | - | 23895:1836-1855 | MS.gene45445:CDS | 25.0% |
!! | TCTTACTATTTTCGAAGAAA+TGG | - | 23895:2126-2145 | MS.gene45445:intron | 25.0% |
!! | TTCTTAGATGAATTTTTGCA+TGG | - | 23895:716-735 | MS.gene45445:CDS | 25.0% |
!!! | AAAGGGTTTGATAATTTTTC+TGG | - | 23895:790-809 | MS.gene45445:CDS | 25.0% |
!!! | AAGGGTTTGATAATTTTTCT+GGG | - | 23895:791-810 | MS.gene45445:CDS | 25.0% |
!!! | AATTTTGATAGAGTGAAGAA+AGG | - | 23895:772-791 | MS.gene45445:CDS | 25.0% |
!!! | ATTTTGATAGAGTGAAGAAA+GGG | - | 23895:773-792 | MS.gene45445:CDS | 25.0% |
!!! | TCATAAATATTTTTGGGTCA+AGG | - | 23895:915-934 | MS.gene45445:CDS | 25.0% |
!!! | TGGTGTTTTTTATACTATCA+TGG | - | 23895:1760-1779 | MS.gene45445:CDS | 25.0% |
!!! | TTGCACTTTTTGAAATGAAA+TGG | - | 23895:1740-1759 | MS.gene45445:CDS | 25.0% |
AATATATGTGTGTTGCATGT+TGG | + | 23895:1010-1029 | None:intergenic | 30.0% | |
AGAACAAGCTTATGAAATGA+AGG | + | 23895:613-632 | None:intergenic | 30.0% | |
AGCATATGTTAGTAAATTGC+TGG | + | 23895:1484-1503 | None:intergenic | 30.0% | |
ATCAAACTTCAAATCTCTGA+TGG | - | 23895:2924-2943 | MS.gene45445:intron | 30.0% | |
TACTGTATTTCGTATTACAG+AGG | - | 23895:3094-3113 | MS.gene45445:intron | 30.0% | |
TCAAACTTCAAATCTCTGAT+GGG | - | 23895:2925-2944 | MS.gene45445:intron | 30.0% | |
TGAAGATTCTGTTGAAATCA+TGG | - | 23895:2153-2172 | MS.gene45445:intron | 30.0% | |
TGATAGTTAATCTCAGATGT+AGG | + | 23895:2061-2080 | None:intergenic | 30.0% | |
TTGTAATAAGTTCGTCGAAT+CGG | + | 23895:1713-1732 | None:intergenic | 30.0% | |
! | AATTGTTTCTCACTGTAACT+CGG | + | 23895:1526-1545 | None:intergenic | 30.0% |
! | ATATGATTTGTGAATTGCAG+AGG | - | 23895:1807-1826 | MS.gene45445:CDS | 30.0% |
! | GATTTTATGAGGAAATATGG+TGG | - | 23895:1839-1858 | MS.gene45445:CDS | 30.0% |
! | TTTTACTGGTGGAATTTTTG+AGG | - | 23895:1128-1147 | MS.gene45445:CDS | 30.0% |
!! | AAATGATTTTGCAGCATTGA+TGG | + | 23895:2703-2722 | None:intergenic | 30.0% |
!!! | AACAAATTTTGGTTCCTTGA+TGG | - | 23895:1935-1954 | MS.gene45445:CDS | 30.0% |
!!! | TAACTGCTTTGTTTTGCAAT+AGG | + | 23895:2207-2226 | None:intergenic | 30.0% |
!!! | TTTCGTGGGTTTGTTTTTAT+CGG | + | 23895:1425-1444 | None:intergenic | 30.0% |
AACCATCTAATCCTTTCTGT+CGG | - | 23895:2724-2743 | MS.gene45445:intron | 35.0% | |
ACGACCCTCCTATTTATATA+GGG | - | 23895:2755-2774 | MS.gene45445:intron | 35.0% | |
AGAAAACTGCTGTAAAGAAG+AGG | - | 23895:2467-2486 | MS.gene45445:intron | 35.0% | |
AGCTTATGAAATGAAGGAGA+AGG | + | 23895:607-626 | None:intergenic | 35.0% | |
CAACAAGTATCCAGTACTAA+TGG | + | 23895:1987-2006 | None:intergenic | 35.0% | |
GAAAGGGAAACAATACAACA+AGG | - | 23895:1372-1391 | MS.gene45445:CDS | 35.0% | |
TAATCAGTTTAGTTGAAGCG+AGG | + | 23895:3196-3215 | None:intergenic | 35.0% | |
TACGACCCTCCTATTTATAT+AGG | - | 23895:2754-2773 | MS.gene45445:intron | 35.0% | |
TATATAAATAGGAGGGTCGT+AGG | + | 23895:2755-2774 | None:intergenic | 35.0% | |
TATGCACCCCCTATATAAAT+AGG | + | 23895:2766-2785 | None:intergenic | 35.0% | |
TTACCCATCGATACCTTATT+TGG | + | 23895:1450-1469 | None:intergenic | 35.0% | |
TTGCAAAACAAAGCAGTTAC+CGG | - | 23895:2208-2227 | MS.gene45445:intron | 35.0% | |
TTTCGCTGGAGAACAATTTA+GGG | - | 23895:3015-3034 | MS.gene45445:intron | 35.0% | |
TTTCGTATTACAGAGGATGA+AGG | - | 23895:3101-3120 | MS.gene45445:intron | 35.0% | |
TTTGCAGAGAAGAACTTGAA+TGG | - | 23895:2888-2907 | MS.gene45445:intron | 35.0% | |
! | CATTAGTACTGGATACTTGT+TGG | - | 23895:1985-2004 | MS.gene45445:intron | 35.0% |
! | TACCCATCGATACCTTATTT+GGG | + | 23895:1449-1468 | None:intergenic | 35.0% |
! | TTTATATAGGGGGTGCATAA+TGG | - | 23895:2767-2786 | MS.gene45445:intron | 35.0% |
! | TTTTCGCTGGAGAACAATTT+AGG | - | 23895:3014-3033 | MS.gene45445:intron | 35.0% |
!! | AAACCCAAATAAGGTATCGA+TGG | - | 23895:1443-1462 | MS.gene45445:CDS | 35.0% |
!! | AACCCAAATAAGGTATCGAT+GGG | - | 23895:1444-1463 | MS.gene45445:CDS | 35.0% |
!! | AAGTTCCGTGATTCTGAAAT+TGG | - | 23895:1670-1689 | MS.gene45445:CDS | 35.0% |
!! | ATACCTTATTTGGGTTTTCG+TGG | + | 23895:1440-1459 | None:intergenic | 35.0% |
!! | ATTTTTAGATTAGATGGGCG+TGG | - | 23895:881-900 | MS.gene45445:CDS | 35.0% |
!! | TACCTTATTTGGGTTTTCGT+GGG | + | 23895:1439-1458 | None:intergenic | 35.0% |
!!! | AGAGTTTTTTGGATGACTGA+TGG | - | 23895:1101-1120 | MS.gene45445:CDS | 35.0% |
!!! | GAGTTTTTTGGATGACTGAT+GGG | - | 23895:1102-1121 | MS.gene45445:CDS | 35.0% |
!!! | TTCGTGGGTTTGTTTTTATC+GGG | + | 23895:1424-1443 | None:intergenic | 35.0% |
AAAAAACTCGTGGCAACGAA+AGG | - | 23895:1355-1374 | MS.gene45445:CDS | 40.0% | |
AAAAACTCGTGGCAACGAAA+GGG | - | 23895:1356-1375 | MS.gene45445:CDS | 40.0% | |
AAACAATTCCCATGCATTGG+AGG | - | 23895:1538-1557 | MS.gene45445:CDS | 40.0% | |
AAACTGGAGACCTATATCTC+TGG | + | 23895:2380-2399 | None:intergenic | 40.0% | |
AACAGCTGAAGAAAGAGAGA+AGG | - | 23895:2677-2696 | MS.gene45445:intron | 40.0% | |
AACCAGTTGACCAGAGATAT+AGG | - | 23895:2367-2386 | MS.gene45445:intron | 40.0% | |
AACCCACGAAAACCCAAATA+AGG | - | 23895:1434-1453 | MS.gene45445:CDS | 40.0% | |
AAGAACTTGAATGGCGTTTC+AGG | - | 23895:2897-2916 | MS.gene45445:intron | 40.0% | |
AATAGCATAAACTGGGGTGA+AGG | - | 23895:2307-2326 | MS.gene45445:intron | 40.0% | |
ACCATCTAATCCTTTCTGTC+GGG | - | 23895:2725-2744 | MS.gene45445:intron | 40.0% | |
ACCTCATCTTCATGTTCAGA+AGG | + | 23895:2606-2625 | None:intergenic | 40.0% | |
ACTTGATGAAAGGGATGACA+AGG | + | 23895:857-876 | None:intergenic | 40.0% | |
AGTAAGTTTATCAGCTGAGC+CGG | + | 23895:2230-2249 | None:intergenic | 40.0% | |
ATAAGTTCGTCGAATCGGTT+TGG | + | 23895:1708-1727 | None:intergenic | 40.0% | |
ATGAGGTAGAAATGCGCAAT+AGG | - | 23895:2619-2638 | MS.gene45445:intron | 40.0% | |
CAAAGCAAGATGGTAGATAC+TGG | + | 23895:2872-2891 | None:intergenic | 40.0% | |
CAAATTCATTCCAGCCATCA+AGG | + | 23895:1952-1971 | None:intergenic | 40.0% | |
CACCCCCTATATAAATAGGA+GGG | + | 23895:2762-2781 | None:intergenic | 40.0% | |
CGACCCTCCTATTTATATAG+GGG | - | 23895:2756-2775 | MS.gene45445:intron | 40.0% | |
CGTTTACCAGTTTCACATGT+TGG | + | 23895:3157-3176 | None:intergenic | 40.0% | |
GACCCTCCTATTTATATAGG+GGG | - | 23895:2757-2776 | MS.gene45445:intron | 40.0% | |
GAGAAACAATTCCCATGCAT+TGG | - | 23895:1535-1554 | MS.gene45445:CDS | 40.0% | |
GCACTGCAGAATCTGTTTAA+TGG | - | 23895:2274-2293 | MS.gene45445:intron | 40.0% | |
GCTGTAAAGAAGAGGAAATC+AGG | - | 23895:2475-2494 | MS.gene45445:intron | 40.0% | |
GCTTGAGTGTTTGTGTGTTA+CGG | - | 23895:1636-1655 | MS.gene45445:CDS | 40.0% | |
GTCAAATCATAAAGTGGGGT+TGG | - | 23895:965-984 | MS.gene45445:intron | 40.0% | |
GTGTGTTGCATGTTGGAAAT+AGG | + | 23895:1003-1022 | None:intergenic | 40.0% | |
GTTACTCTCAAAGTTCCTGA+TGG | - | 23895:1878-1897 | MS.gene45445:CDS | 40.0% | |
GTTGTAACATGAAGGTAGCT+CGG | - | 23895:1225-1244 | MS.gene45445:intron | 40.0% | |
TCATCTTCATGTTCAGAAGG+AGG | + | 23895:2603-2622 | None:intergenic | 40.0% | |
TCCTTCTGAACATGAAGATG+AGG | - | 23895:2602-2621 | MS.gene45445:intron | 40.0% | |
TGTGCTAGGTTGTAACATGA+AGG | - | 23895:1217-1236 | MS.gene45445:intron | 40.0% | |
TTAAACAGATTCTGCAGTGC+TGG | + | 23895:2274-2293 | None:intergenic | 40.0% | |
TTCGCTGGAGAACAATTTAG+GGG | - | 23895:3016-3035 | MS.gene45445:intron | 40.0% | |
TTCTTCTCTGCAAAGCAAGA+TGG | + | 23895:2882-2901 | None:intergenic | 40.0% | |
TTTGCAATAGGCTAGGAGTA+AGG | + | 23895:2195-2214 | None:intergenic | 40.0% | |
! | AGTAATGAAGCGTCTCTCTT+TGG | - | 23895:2097-2116 | MS.gene45445:intron | 40.0% |
! | CAAGGTCTCAAGATTAGTCA+TGG | - | 23895:933-952 | MS.gene45445:intron | 40.0% |
! | GGAACTTTGAGAGTAACCAT+TGG | + | 23895:1875-1894 | None:intergenic | 40.0% |
! | GGAGGTGTAACTTATATAGG+CGG | + | 23895:1400-1419 | None:intergenic | 40.0% |
! | GGCTTCCAGATGATTTTATG+AGG | - | 23895:1828-1847 | MS.gene45445:CDS | 40.0% |
! | TAGCTCTACCACCTCTATAA+AGG | + | 23895:2971-2990 | None:intergenic | 40.0% |
! | TGGTGGTGATATTTCTCCAA+TGG | - | 23895:1856-1875 | MS.gene45445:CDS | 40.0% |
! | TGTTGCAGTTCTTTTCCTTG+CGG | + | 23895:2661-2680 | None:intergenic | 40.0% |
! | TTTATGAAAGTGCATCCGCA+AGG | - | 23895:2643-2662 | MS.gene45445:intron | 40.0% |
!! | TTTTGAAAGTGCAGATGTCC+AGG | - | 23895:2575-2594 | MS.gene45445:intron | 40.0% |
!!! | AATTTTGGTTCCTTGATGGC+TGG | - | 23895:1939-1958 | MS.gene45445:CDS | 40.0% |
!!! | GCTTTGTTTTGCAATAGGCT+AGG | + | 23895:2202-2221 | None:intergenic | 40.0% |
!!! | TGACTGATGGGTTGTTTTAC+TGG | - | 23895:1114-1133 | MS.gene45445:CDS | 40.0% |
AAATCTCTGATGGGAGACAG+TGG | - | 23895:2934-2953 | MS.gene45445:intron | 45.0% | |
ACCCGACAGAAAGGATTAGA+TGG | + | 23895:2729-2748 | None:intergenic | 45.0% | |
CAAGACGCACAAAAAACTCG+TGG | - | 23895:1345-1364 | MS.gene45445:CDS | 45.0% | |
CACTCTTCAAGCTAAGCAAC+TGG | - | 23895:639-658 | MS.gene45445:CDS | 45.0% | |
CTCTGTATGAAGCATGTGCT+AGG | - | 23895:1203-1222 | MS.gene45445:CDS | 45.0% | |
CTGGAGAACAATTTAGGGGA+AGG | - | 23895:3020-3039 | MS.gene45445:intron | 45.0% | |
GAAAGGGATGACAAGGTTTG+AGG | + | 23895:850-869 | None:intergenic | 45.0% | |
GACCTATATCTCTGGTCAAC+TGG | + | 23895:2372-2391 | None:intergenic | 45.0% | |
GCACCCCCTATATAAATAGG+AGG | + | 23895:2763-2782 | None:intergenic | 45.0% | |
GCAGAACCAACATGTGAAAC+TGG | - | 23895:3148-3167 | MS.gene45445:intron | 45.0% | |
GCTTCATTACTTCTTTGCGC+AGG | + | 23895:2088-2107 | None:intergenic | 45.0% | |
GGCAGCCAATTTCAGAATCA+CGG | + | 23895:1678-1697 | None:intergenic | 45.0% | |
GGTAGAGCTAAGTTAAGCCA+GGG | - | 23895:2981-3000 | MS.gene45445:intron | 45.0% | |
GTAGAGCTAAGTTAAGCCAG+GGG | - | 23895:2982-3001 | MS.gene45445:intron | 45.0% | |
GTGGCGTGTAGGAATGAAAA+AGG | - | 23895:1907-1926 | MS.gene45445:CDS | 45.0% | |
TAACATGAAGGTAGCTCGGT+TGG | - | 23895:1229-1248 | MS.gene45445:intron | 45.0% | |
TCCTTCCAGAAATGCCAACT+CGG | - | 23895:2339-2358 | MS.gene45445:intron | 45.0% | |
TGGTAGAGCTAAGTTAAGCC+AGG | - | 23895:2980-2999 | MS.gene45445:intron | 45.0% | |
! | CAGTTGCTTAGCTTGAAGAG+TGG | + | 23895:641-660 | None:intergenic | 45.0% |
! | GATGACAAGGTTTGAGGTTG+TGG | + | 23895:844-863 | None:intergenic | 45.0% |
! | GGCGGAGGTGTAACTTATAT+AGG | + | 23895:1403-1422 | None:intergenic | 45.0% |
! | GGTTTGAGGTTGTGGATGAT+TGG | + | 23895:836-855 | None:intergenic | 45.0% |
! | TGCTTAGCTTGAAGAGTGGA+GGG | + | 23895:637-656 | None:intergenic | 45.0% |
! | TTGCTTAGCTTGAAGAGTGG+AGG | + | 23895:638-657 | None:intergenic | 45.0% |
!! | ACATGTTGGTTCTGCTGCAA+CGG | + | 23895:3143-3162 | None:intergenic | 45.0% |
!! | TAGCTCGGTTGGTGAGTTAA+GGG | - | 23895:1240-1259 | MS.gene45445:intron | 45.0% |
!! | TCGAATCGGTTTGGCAAGAT+TGG | + | 23895:1699-1718 | None:intergenic | 45.0% |
!!! | CTGATGGGTTGTTTTACTGG+TGG | - | 23895:1117-1136 | MS.gene45445:CDS | 45.0% |
!!! | GTGGGTTTGTTTTTATCGGG+CGG | + | 23895:1421-1440 | None:intergenic | 45.0% |
AACGAAGGAAGTAGTGCTGC+AGG | - | 23895:3070-3089 | MS.gene45445:intron | 50.0% | |
AGCATAAACTGGGGTGAAGG+TGG | - | 23895:2310-2329 | MS.gene45445:intron | 50.0% | |
AGGCTAGGAGTAAGGTTCGT+AGG | + | 23895:2187-2206 | None:intergenic | 50.0% | |
AGGTTCCTCCTCCAATGCAT+GGG | + | 23895:1549-1568 | None:intergenic | 50.0% | |
CAACTGGTTGTCTACCGAGT+TGG | + | 23895:2356-2375 | None:intergenic | 50.0% | |
CAATTCCCATGCATTGGAGG+AGG | - | 23895:1541-1560 | MS.gene45445:CDS | 50.0% | |
CATGTTCAGAAGGAGGTTCC+TGG | + | 23895:2596-2615 | None:intergenic | 50.0% | |
CCAGTTCGCTGCCTTTATAG+AGG | - | 23895:2957-2976 | MS.gene45445:intron | 50.0% | |
CCTCTATAAAGGCAGCGAAC+TGG | + | 23895:2960-2979 | None:intergenic | 50.0% | |
CGATGTGTGTGTGTTTGAGC+TGG | - | 23895:3043-3062 | MS.gene45445:intron | 50.0% | |
GAAGCGAGGTGATGCTGAAA+CGG | + | 23895:3182-3201 | None:intergenic | 50.0% | |
GCATAAACTGGGGTGAAGGT+GGG | - | 23895:2311-2330 | MS.gene45445:intron | 50.0% | |
GTTCGCTGCCTTTATAGAGG+TGG | - | 23895:2960-2979 | MS.gene45445:intron | 50.0% | |
GTTTGAGCTGGTTGCAACGA+AGG | - | 23895:3055-3074 | MS.gene45445:intron | 50.0% | |
TGAAGAGTTGAAGTTGCGCG+CGG | - | 23895:2426-2445 | MS.gene45445:intron | 50.0% | |
! | AACAGATTCTGCAGTGCTGG+AGG | + | 23895:2271-2290 | None:intergenic | 50.0% |
! | ACCGAGTTGGCATTTCTGGA+AGG | + | 23895:2343-2362 | None:intergenic | 50.0% |
! | GTCTACCGAGTTGGCATTTC+TGG | + | 23895:2347-2366 | None:intergenic | 50.0% |
!! | GTAGCTCGGTTGGTGAGTTA+AGG | - | 23895:1239-1258 | MS.gene45445:intron | 50.0% |
!!! | GGTTTGTTTTTATCGGGCGG+AGG | + | 23895:1418-1437 | None:intergenic | 50.0% |
AAGTTCCTGATGGCAGTGCG+TGG | - | 23895:1888-1907 | MS.gene45445:CDS | 55.0% | |
CAGGTTCCTCCTCCAATGCA+TGG | + | 23895:1550-1569 | None:intergenic | 55.0% | |
CGTAGGACAACCCGACAGAA+AGG | + | 23895:2738-2757 | None:intergenic | 55.0% | |
GAGCTAAGTTAAGCCAGGGG+TGG | - | 23895:2985-3004 | MS.gene45445:intron | 55.0% | |
GCGAAAACTCATACCACCCC+TGG | + | 23895:3001-3020 | None:intergenic | 55.0% | |
! | AGATTCTGCAGTGCTGGAGG+CGG | + | 23895:2268-2287 | None:intergenic | 55.0% |
! | GGGGTGGTATGAGTTTTCGC+TGG | - | 23895:3001-3020 | MS.gene45445:intron | 55.0% |
GCGCGCGGCTACTGATGAAA+AGG | - | 23895:2441-2460 | MS.gene45445:intron | 60.0% | |
GGTTCTGCTGCAACGGCTGT+GGG | + | 23895:3136-3155 | None:intergenic | 60.0% | |
TGCAACGGCTGTGGGCTCAA+CGG | + | 23895:3128-3147 | None:intergenic | 60.0% | |
! | TGGTTCTGCTGCAACGGCTG+TGG | + | 23895:3137-3156 | None:intergenic | 60.0% |
ACACGCCACGCACTGCCATC+AGG | + | 23895:1896-1915 | None:intergenic | 65.0% | |
GATGGCAGTGCGTGGCGTGT+AGG | - | 23895:1896-1915 | MS.gene45445:CDS | 65.0% | |
GGAGGCGGACGAGACTTGCA+AGG | + | 23895:2253-2272 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
23895 | gene | 601 | 3223 | 601 | ID=MS.gene45445 |
23895 | mRNA | 601 | 3223 | 601 | ID=MS.gene45445.t1;Parent=MS.gene45445 |
23895 | exon | 3164 | 3223 | 3164 | ID=MS.gene45445.t1.exon1;Parent=MS.gene45445.t1 |
23895 | CDS | 3164 | 3223 | 3164 | ID=cds.MS.gene45445.t1;Parent=MS.gene45445.t1 |
23895 | exon | 1328 | 1997 | 1328 | ID=MS.gene45445.t1.exon2;Parent=MS.gene45445.t1 |
23895 | CDS | 1328 | 1997 | 1328 | ID=cds.MS.gene45445.t1;Parent=MS.gene45445.t1 |
23895 | exon | 1036 | 1235 | 1036 | ID=MS.gene45445.t1.exon3;Parent=MS.gene45445.t1 |
23895 | CDS | 1036 | 1235 | 1036 | ID=cds.MS.gene45445.t1;Parent=MS.gene45445.t1 |
23895 | exon | 601 | 951 | 601 | ID=MS.gene45445.t1.exon4;Parent=MS.gene45445.t1 |
23895 | CDS | 601 | 951 | 601 | ID=cds.MS.gene45445.t1;Parent=MS.gene45445.t1 |
Gene Sequence |
Protein sequence |