Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47933.t1 | XP_003630019.2 | 99.6 | 1054 | 4 | 0 | 1 | 1054 | 36 | 1089 | 0.00E+00 | 2109 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47933.t1 | Q6QNU4 | 89.9 | 1055 | 106 | 1 | 1 | 1054 | 36 | 1090 | 0.0e+00 | 1943.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47933.t1 | G7L9M1 | 99.6 | 1054 | 4 | 0 | 1 | 1054 | 36 | 1089 | 0.0e+00 | 2109.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene47933 | 0.808954 | 2.40E-50 | -1.69E-46 |
| MS.gene049190 | MS.gene47933 | 0.827933 | 1.19E-54 | -1.69E-46 |
| MS.gene049435 | MS.gene47933 | 0.808614 | 2.84E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene47933 | 0.829686 | 4.48E-55 | -1.69E-46 |
| MS.gene050020 | MS.gene47933 | 0.805851 | 1.09E-49 | -1.69E-46 |
| MS.gene05016 | MS.gene47933 | 0.809706 | 1.66E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene47933 | 0.811715 | 6.09E-51 | -1.69E-46 |
| MS.gene050561 | MS.gene47933 | 0.809918 | 1.49E-50 | -1.69E-46 |
| MS.gene050562 | MS.gene47933 | 0.800875 | 1.17E-48 | -1.69E-46 |
| MS.gene051198 | MS.gene47933 | 0.828507 | 8.65E-55 | -1.69E-46 |
| MS.gene051279 | MS.gene47933 | 0.826685 | 2.37E-54 | -1.69E-46 |
| MS.gene05157 | MS.gene47933 | 0.81687 | 4.42E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene47933 | 0.803406 | 3.54E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene47933 | 0.824612 | 7.35E-54 | -1.69E-46 |
| MS.gene051800 | MS.gene47933 | 0.819874 | 9.23E-53 | -1.69E-46 |
| MS.gene052020 | MS.gene47933 | 0.804241 | 2.37E-49 | -1.69E-46 |
| MS.gene052239 | MS.gene47933 | -0.802389 | 5.74E-49 | -1.69E-46 |
| MS.gene052323 | MS.gene47933 | 0.806267 | 8.94E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene47933 | 0.809416 | 1.91E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene47933 | 0.841866 | 3.66E-58 | -1.69E-46 |
| MS.gene052612 | MS.gene47933 | 0.837437 | 5.20E-57 | -1.69E-46 |
| MS.gene053079 | MS.gene47933 | 0.829972 | 3.82E-55 | -1.69E-46 |
| MS.gene053226 | MS.gene47933 | 0.805307 | 1.42E-49 | -1.69E-46 |
| MS.gene053565 | MS.gene47933 | 0.860699 | 1.72E-63 | -1.69E-46 |
| MS.gene053998 | MS.gene47933 | 0.810881 | 9.24E-51 | -1.69E-46 |
| MS.gene054584 | MS.gene47933 | 0.811118 | 8.21E-51 | -1.69E-46 |
| MS.gene05462 | MS.gene47933 | 0.803443 | 3.48E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene47933 | 0.812601 | 3.90E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene47933 | 0.812054 | 5.14E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene47933 | 0.825867 | 3.71E-54 | -1.69E-46 |
| MS.gene056507 | MS.gene47933 | 0.859872 | 3.06E-63 | -1.69E-46 |
| MS.gene056553 | MS.gene47933 | 0.840083 | 1.08E-57 | -1.69E-46 |
| MS.gene056622 | MS.gene47933 | 0.811425 | 7.05E-51 | -1.69E-46 |
| MS.gene057314 | MS.gene47933 | 0.819162 | 1.34E-52 | -1.69E-46 |
| MS.gene057598 | MS.gene47933 | 0.831854 | 1.32E-55 | -1.69E-46 |
| MS.gene057869 | MS.gene47933 | 0.846574 | 1.99E-59 | -1.69E-46 |
| MS.gene057915 | MS.gene47933 | 0.821699 | 3.51E-53 | -1.69E-46 |
| MS.gene058009 | MS.gene47933 | 0.803846 | 2.87E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene47933 | 0.849826 | 2.52E-60 | -1.69E-46 |
| MS.gene058625 | MS.gene47933 | 0.800894 | 1.16E-48 | -1.69E-46 |
| MS.gene058829 | MS.gene47933 | 0.827075 | 1.91E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene47933 | 0.816186 | 6.30E-52 | -1.69E-46 |
| MS.gene059725 | MS.gene47933 | 0.803048 | 4.20E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene47933 | 0.842079 | 3.22E-58 | -1.69E-46 |
| MS.gene060355 | MS.gene47933 | 0.807639 | 4.58E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene47933 | 0.825137 | 5.52E-54 | -1.69E-46 |
| MS.gene060918 | MS.gene47933 | 0.8205 | 6.64E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 236 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTTCTGCAGTCTATTT+TGG | 0.124172 | 4.1:+11400973 | MS.gene47933:intron |
| CCACTTGACACTTATGAATA+TGG | 0.189610 | 4.1:+11409643 | MS.gene47933:CDS |
| CTTGGAAAGGTATGTCAATT+TGG | 0.198188 | 4.1:+11405920 | MS.gene47933:CDS |
| CAGATTCCAACTGTTATATT+TGG | 0.208983 | 4.1:+11410681 | MS.gene47933:CDS |
| CTCTGTGGTGTGCTTATTAT+TGG | 0.209216 | 4.1:+11404501 | MS.gene47933:CDS |
| GTTATATTTGGCACCATTAA+TGG | 0.212435 | 4.1:+11410693 | MS.gene47933:CDS |
| GGCACCATTAATGGTGTTAT+TGG | 0.214754 | 4.1:+11410702 | MS.gene47933:CDS |
| TACTGCTTGAACGCGTTTAA+TGG | 0.225069 | 4.1:+11409932 | MS.gene47933:CDS |
| CACTTGGTTTACCTCGAAAT+TGG | 0.228300 | 4.1:+11408420 | MS.gene47933:CDS |
| GATAATGCATTTGTCTATAT+TGG | 0.243996 | 4.1:+11405027 | MS.gene47933:CDS |
| TACCCCAATAACACCATTAA+TGG | 0.267127 | 4.1:-11410706 | None:intergenic |
| GCACCATTAATGGTGTTATT+GGG | 0.269623 | 4.1:+11410703 | MS.gene47933:CDS |
| AACATATGAGGTTGCTCTTA+AGG | 0.276914 | 4.1:+11404398 | MS.gene47933:CDS |
| GCTTGAGGAGCTCCAAGTTT+TGG | 0.285324 | 4.1:+11403504 | MS.gene47933:CDS |
| CTTGTATGACGGTTTGTTTA+AGG | 0.292473 | 4.1:+11402047 | MS.gene47933:CDS |
| TTGGAAAGGTATGTCAATTT+GGG | 0.296263 | 4.1:+11405921 | MS.gene47933:CDS |
| GTTATTCCCTTTGACAATAA+AGG | 0.301699 | 4.1:+11402184 | MS.gene47933:CDS |
| CATCTCCTTGTTAATCTATA+AGG | 0.308733 | 4.1:+11410120 | MS.gene47933:CDS |
| GCTCCTTTGTGATGAGATTA+AGG | 0.312120 | 4.1:-11408596 | None:intergenic |
| GCTTACTGCTCAGGGCTTGC+AGG | 0.314406 | 4.1:+11400221 | MS.gene47933:CDS |
| CTCAAAACAGTCTTGATAAT+GGG | 0.325345 | 4.1:+11404448 | MS.gene47933:CDS |
| ACGGTGCATGCCACTCATTC+AGG | 0.339662 | 4.1:-11407367 | None:intergenic |
| GTCTCAAAATAGAGCCCCTT+GGG | 0.342415 | 4.1:+11404971 | MS.gene47933:CDS |
| GTTCTTCTTTGTGCGTTTGA+AGG | 0.343825 | 4.1:+11408648 | MS.gene47933:CDS |
| GACCTTGGCCTTGCCTTTCA+AGG | 0.350635 | 4.1:-11405971 | None:intergenic |
| GAGAAAGTCCGTAGAGTAAT+AGG | 0.354675 | 4.1:-11409129 | None:intergenic |
| GATCCTGATTGTAGGTTGAT+TGG | 0.356316 | 4.1:+11402018 | MS.gene47933:CDS |
| AACACAAAACTTGTATCTTT+CGG | 0.356832 | 4.1:-11401195 | None:intergenic |
| CTCGGGACTATAATGCAAAT+TGG | 0.363149 | 4.1:+11410451 | MS.gene47933:CDS |
| CAAATATAACAGTTGGAATC+TGG | 0.372665 | 4.1:-11410680 | None:intergenic |
| TCTCAAAACAGTCTTGATAA+TGG | 0.374312 | 4.1:+11404447 | MS.gene47933:CDS |
| CTCATCACAAAGGAGCATTT+AGG | 0.375598 | 4.1:+11408603 | MS.gene47933:CDS |
| GGCTACAGGTGGTGGGCACT+TGG | 0.378105 | 4.1:+11408404 | MS.gene47933:CDS |
| CATATTCGCACTATTCCATT+GGG | 0.381367 | 4.1:+11409472 | MS.gene47933:CDS |
| TTCTTCTTTGTGCGTTTGAA+GGG | 0.385679 | 4.1:+11408649 | MS.gene47933:CDS |
| ATTAGCACTGCAGTATACTA+TGG | 0.389127 | 4.1:-11404532 | None:intergenic |
| AACTTGAGGAAGGTGATTAA+AGG | 0.390385 | 4.1:+11410780 | MS.gene47933:CDS |
| GAGAGTTTATCAATCGGTTT+CGG | 0.391578 | 4.1:+11410616 | MS.gene47933:CDS |
| AAATACATGGGTAGTATTCT+TGG | 0.396304 | 4.1:-11409154 | None:intergenic |
| AGCTGTACAAGTGGGTGCTC+CGG | 0.397163 | 4.1:+11409987 | MS.gene47933:CDS |
| ATCTGGCCTACGTCGGAATC+TGG | 0.399624 | 4.1:-11410663 | None:intergenic |
| CGTGTTGTTCGTAATGGAAT+AGG | 0.401088 | 4.1:+11406035 | MS.gene47933:CDS |
| TGTAACAAGCTCGGATTTCT+CGG | 0.401571 | 4.1:-11401231 | None:intergenic |
| ATTTAACATACAGCTCTGAT+TGG | 0.401669 | 4.1:-11404570 | None:intergenic |
| GATTCACTTGCTTACTGCTC+AGG | 0.403778 | 4.1:+11400212 | MS.gene47933:CDS |
| TGCTGCTAGCTGACTCTGAT+TGG | 0.409702 | 4.1:-11408526 | None:intergenic |
| GTCTATATTGGTTCAAGCTA+TGG | 0.412748 | 4.1:+11405039 | MS.gene47933:CDS |
| ATAGTATACTGCAGTGCTAA+TGG | 0.414262 | 4.1:+11404534 | MS.gene47933:CDS |
| ATTTCTGCCATCCAGATCAA+TGG | 0.414475 | 4.1:+11401798 | MS.gene47933:intron |
| AGGCGCCACTGATGAAGAAC+GGG | 0.416102 | 4.1:+11410560 | MS.gene47933:CDS |
| GTATTATAGATCCTGATTGT+AGG | 0.416954 | 4.1:+11402010 | MS.gene47933:CDS |
| TATTTACTTGGTGACCATAC+AGG | 0.421469 | 4.1:+11404754 | MS.gene47933:CDS |
| GGTCAGGTTGTGACTTGCTC+TGG | 0.421885 | 4.1:+11405990 | MS.gene47933:CDS |
| AGAAGTAAAGCATGCCCAAC+TGG | 0.424429 | 4.1:+11408458 | MS.gene47933:CDS |
| CGAGTTAACAGATAGGAAAA+AGG | 0.425998 | 4.1:+11409089 | MS.gene47933:CDS |
| CACCAATGGGATTAATGTCT+AGG | 0.426916 | 4.1:-11408497 | None:intergenic |
| ATTTATCAATTTACCTTGGT+TGG | 0.430696 | 4.1:-11409754 | None:intergenic |
| TTTCTGCCATCCAGATCAAT+GGG | 0.431810 | 4.1:+11401799 | MS.gene47933:intron |
| TCATATTCGCACTATTCCAT+TGG | 0.434143 | 4.1:+11409471 | MS.gene47933:CDS |
| ATTCACGAGTACCGTCTTCC+CGG | 0.436927 | 4.1:-11410006 | None:intergenic |
| CCACTCATTCAGGAGCTCTC+TGG | 0.439072 | 4.1:-11407357 | None:intergenic |
| TCCCTACGTGTTGTTCGTAA+TGG | 0.439345 | 4.1:+11406029 | MS.gene47933:CDS |
| AGCTGTCCTTTATTGTCAAA+GGG | 0.442075 | 4.1:-11402190 | None:intergenic |
| TTGGACATTAAATTTCTGTA+TGG | 0.443919 | 4.1:+11403523 | MS.gene47933:CDS |
| ATTCAGGAGCTCTCTGGTTG+TGG | 0.450481 | 4.1:-11407351 | None:intergenic |
| TGGAATAGGTATCAATGAAC+AGG | 0.450725 | 4.1:+11406049 | MS.gene47933:CDS |
| AACTGAAACTTCCATCGCCT+TGG | 0.450793 | 4.1:-11410937 | None:intergenic |
| ATAGGAAGACCAACGGATAA+TGG | 0.452314 | 4.1:+11401838 | MS.gene47933:CDS |
| TGCACGGCGGATATGCCATC+AGG | 0.452950 | 4.1:+11409501 | MS.gene47933:CDS |
| TGGACACCACGGGCACATAC+TGG | 0.458407 | 4.1:+11410042 | MS.gene47933:CDS |
| CAGGCAATTACAAAAGCCTA+TGG | 0.460282 | 4.1:+11404706 | MS.gene47933:intron |
| TTGCTATGTGCCCTTGGTGA+TGG | 0.460806 | 4.1:+11409030 | MS.gene47933:CDS |
| GTGCCCGTGGTGTCCACATT+CGG | 0.461850 | 4.1:-11410035 | None:intergenic |
| TCTTACTTGCTATGTGCCCT+TGG | 0.462622 | 4.1:+11409024 | MS.gene47933:CDS |
| GACTTGCTCTGGAGCTTACA+AGG | 0.466419 | 4.1:+11406001 | MS.gene47933:CDS |
| GAAATTTAATGTCCAAAACT+TGG | 0.469071 | 4.1:-11403516 | None:intergenic |
| AGAACCACGATAGTTGGCTT+TGG | 0.470356 | 4.1:-11403550 | None:intergenic |
| CCGATATGAAGTCAAAAGTC+TGG | 0.472227 | 4.1:-11409615 | None:intergenic |
| AACTATCGTGGTTCTTTACC+AGG | 0.475287 | 4.1:+11403558 | MS.gene47933:CDS |
| GGTCAGATGCAGCAAATACA+TGG | 0.476544 | 4.1:-11409167 | None:intergenic |
| AAAGAAGGTGAGCTTACTAT+TGG | 0.478013 | 4.1:+11409424 | MS.gene47933:CDS |
| AATCTTCAGCCTGATTCAAA+AGG | 0.479108 | 4.1:+11405882 | MS.gene47933:CDS |
| AGTCAACTCTTCTACTCTCT+TGG | 0.479215 | 4.1:-11410970 | None:intergenic |
| CCGTCATGTTAAAACATATG+AGG | 0.485421 | 4.1:+11404386 | MS.gene47933:CDS |
| GGGGATGTTTCTGATCGTAT+AGG | 0.485443 | 4.1:+11401820 | MS.gene47933:CDS |
| AGGTTCTTATGTGGAAGTCT+TGG | 0.486834 | 4.1:+11405902 | MS.gene47933:CDS |
| TGGGGCTGATTTATTGATAC+CGG | 0.489580 | 4.1:+11404467 | MS.gene47933:CDS |
| GTAGACTAAGCAACCCTGTA+TGG | 0.490396 | 4.1:-11404768 | None:intergenic |
| GCATGAGGAAGGTGCTATTG+AGG | 0.491604 | 4.1:+11410422 | MS.gene47933:intron |
| GCTGTACAAGTGGGTGCTCC+GGG | 0.493964 | 4.1:+11409988 | MS.gene47933:CDS |
| GATGGTTCTAGATATTTACT+TGG | 0.497991 | 4.1:+11404742 | MS.gene47933:CDS |
| GTGCTATTGAGGAGAGAGCT+CGG | 0.499902 | 4.1:+11410433 | MS.gene47933:CDS |
| CTGGAAGAAACTGAGATTGA+GGG | 0.502406 | 4.1:+11406344 | MS.gene47933:CDS |
| GAGCTGTCCTTTATTGTCAA+AGG | 0.502418 | 4.1:-11402191 | None:intergenic |
| AAATCAAACCTGGGTTGCAT+TGG | 0.503640 | 4.1:-11407417 | None:intergenic |
| TGATCTCAAACGCAGTAAGA+TGG | 0.507168 | 4.1:+11410905 | MS.gene47933:CDS |
| GCTGCTAGCTGACTCTGATT+GGG | 0.509055 | 4.1:-11408525 | None:intergenic |
| TGCCTAGACATTAATCCCAT+TGG | 0.509950 | 4.1:+11408495 | MS.gene47933:CDS |
| TATGCCATCAGGAGCAAACT+AGG | 0.511422 | 4.1:+11409512 | MS.gene47933:CDS |
| CACTTATAAAACTTACAACC+AGG | 0.512183 | 4.1:-11406286 | None:intergenic |
| AGGAAGGTGATTAAAGGCGT+TGG | 0.513962 | 4.1:+11410786 | MS.gene47933:CDS |
| TTACTACTATAAATCACAGT+TGG | 0.517519 | 4.1:-11409192 | None:intergenic |
| TGAAAGGCAAGGCCAAGGTC+AGG | 0.521844 | 4.1:+11405974 | MS.gene47933:CDS |
| ATGAGATTTCATACTCCAGT+TGG | 0.522760 | 4.1:-11408473 | None:intergenic |
| GCTGGAAGAAACTGAGATTG+AGG | 0.523648 | 4.1:+11406343 | MS.gene47933:CDS |
| TATAGACAAATGCATTATCA+AGG | 0.524077 | 4.1:-11405023 | None:intergenic |
| ATGTATTTGCTGCATCTGAC+CGG | 0.524765 | 4.1:+11409169 | MS.gene47933:CDS |
| ATGTCCTAGTTTGCTCCTGA+TGG | 0.525861 | 4.1:-11409516 | None:intergenic |
| CACCATTAATGGTGTTATTG+GGG | 0.526170 | 4.1:+11410704 | MS.gene47933:CDS |
| ATGGTGCCAAATATAACAGT+TGG | 0.526265 | 4.1:-11410687 | None:intergenic |
| TGAGATTTCATACTCCAGTT+GGG | 0.526292 | 4.1:-11408472 | None:intergenic |
| GAAAAGCAGCGGAGTTGAAA+GGG | 0.526389 | 4.1:-11409266 | None:intergenic |
| AGTCCAATCAACCTACAATC+AGG | 0.527246 | 4.1:-11402021 | None:intergenic |
| ATTCACTTGCTTACTGCTCA+GGG | 0.529196 | 4.1:+11400213 | MS.gene47933:CDS |
| ACCTTGGAGAGTTTATCAAT+CGG | 0.530210 | 4.1:+11410610 | MS.gene47933:CDS |
| CAGAGTCAGCTAGCAGCAGT+TGG | 0.530439 | 4.1:+11408531 | MS.gene47933:CDS |
| AAGACCAACGGATAATGGTC+AGG | 0.533767 | 4.1:+11401843 | MS.gene47933:CDS |
| TGCTATTGAGGAGAGAGCTC+GGG | 0.534621 | 4.1:+11410434 | MS.gene47933:CDS |
| TTCAAGCTATGGAGATTCAC+AGG | 0.534786 | 4.1:+11405050 | MS.gene47933:CDS |
| GGATGAGATTTCCAAGGCGA+TGG | 0.534862 | 4.1:+11410926 | MS.gene47933:CDS |
| AGTAAATATCTAGAACCATC+GGG | 0.535099 | 4.1:-11404739 | None:intergenic |
| GCACGGGCGAGTTAACAGAT+AGG | 0.538982 | 4.1:+11409082 | MS.gene47933:CDS |
| TTATAGTAATGTTAATCTGA+AGG | 0.539122 | 4.1:+11409227 | MS.gene47933:CDS |
| ACCACACAGAAGTCAACAAT+GGG | 0.539394 | 4.1:-11405945 | None:intergenic |
| TGATTCAAAAGGTTCTTATG+TGG | 0.540128 | 4.1:+11405893 | MS.gene47933:CDS |
| TACTATAAATCACAGTTGGC+CGG | 0.540250 | 4.1:-11409188 | None:intergenic |
| CTTATAGATTAACAAGGAGA+TGG | 0.540637 | 4.1:-11410119 | None:intergenic |
| TAGGCATCAGTAGAACTTCA+AGG | 0.541758 | 4.1:+11406209 | MS.gene47933:intron |
| GGAAAAGCAGCGGAGTTGAA+AGG | 0.541858 | 4.1:-11409267 | None:intergenic |
| CGGGGTCGTCTTGAAGTGGC+TGG | 0.542845 | 4.1:+11410579 | MS.gene47933:CDS |
| TGCTCTGGAGCTTACAAGGA+TGG | 0.543423 | 4.1:+11406005 | MS.gene47933:CDS |
| GGTCTCAAAATAGAGCCCCT+TGG | 0.545517 | 4.1:+11404970 | MS.gene47933:CDS |
| ACAACCAGGAAAGTGTCAAA+AGG | 0.545952 | 4.1:-11406272 | None:intergenic |
| AATGAATCTCGAGGATGAGC+TGG | 0.549604 | 4.1:+11406325 | MS.gene47933:CDS |
| AGTTTAGCGATTGCAAAAGA+AGG | 0.550027 | 4.1:+11409409 | MS.gene47933:intron |
| TGGTAAAGAACCACGATAGT+TGG | 0.550533 | 4.1:-11403556 | None:intergenic |
| AGCACACCACAGAGTGGTGG+GGG | 0.551042 | 4.1:-11404492 | None:intergenic |
| ATTGGACTCCACTTGTATGA+CGG | 0.551218 | 4.1:+11402036 | MS.gene47933:CDS |
| AGAAGCTTCAGTCAAACTTG+AGG | 0.552351 | 4.1:+11410766 | MS.gene47933:CDS |
| GTTTACCTCGAAATTGGAGA+TGG | 0.552837 | 4.1:+11408426 | MS.gene47933:CDS |
| GTAGAACTTCAAGGTATCAA+AGG | 0.553027 | 4.1:+11406218 | MS.gene47933:CDS |
| GTAGCAATTCTTCCATATAA+CGG | 0.553139 | 4.1:-11401001 | None:intergenic |
| AGCAAGTCACAACCTGACCT+TGG | 0.554672 | 4.1:-11405986 | None:intergenic |
| AAGGTGATTAAAGGCGTTGG+AGG | 0.556474 | 4.1:+11410789 | MS.gene47933:CDS |
| AATACCTGACCATTATCCGT+TGG | 0.558143 | 4.1:-11401847 | None:intergenic |
| GAGGACTCAGCCACGAGCAG+TGG | 0.559645 | 4.1:+11410808 | MS.gene47933:CDS |
| AAGTAAATATCTAGAACCAT+CGG | 0.560049 | 4.1:-11404740 | None:intergenic |
| TGCATACCGTGTAACAAGCT+CGG | 0.560183 | 4.1:-11401240 | None:intergenic |
| ATATACCATCTCCAATTTCG+AGG | 0.562164 | 4.1:-11408431 | None:intergenic |
| GTATGAAATCGTAGATGCAA+TGG | 0.563213 | 4.1:-11405001 | None:intergenic |
| CACGTTATTATCATCTGAGA+AGG | 0.563580 | 4.1:-11409686 | None:intergenic |
| AGTCCGAATGTGGACACCAC+GGG | 0.565397 | 4.1:+11410032 | MS.gene47933:CDS |
| TCAACATAAAGTTTAAGAGA+TGG | 0.567060 | 4.1:-11409053 | None:intergenic |
| TAAGCACACCACAGAGTGGT+GGG | 0.568719 | 4.1:-11404494 | None:intergenic |
| GAACACAACCTATTACTCTA+CGG | 0.569345 | 4.1:+11409121 | MS.gene47933:CDS |
| TAAACAAACCGTCATACAAG+TGG | 0.570098 | 4.1:-11402044 | None:intergenic |
| ATTTACTTGGTGACCATACA+GGG | 0.570110 | 4.1:+11404755 | MS.gene47933:CDS |
| TGACAATAAAGGACAGCTCA+AGG | 0.570702 | 4.1:+11402195 | MS.gene47933:CDS |
| GTTGCCGAGAAAGAGACAAA+AGG | 0.576433 | 4.1:+11409902 | MS.gene47933:CDS |
| TCTGTGTGGTAGACCTTGAA+AGG | 0.576761 | 4.1:+11405958 | MS.gene47933:CDS |
| AGCTAGCAGCAGTTGGAATG+TGG | 0.579983 | 4.1:+11408538 | MS.gene47933:CDS |
| AGAGAGTAGAAGAGTTGACT+AGG | 0.582187 | 4.1:+11410973 | MS.gene47933:CDS |
| TCCATTACGAACAACACGTA+GGG | 0.584653 | 4.1:-11406030 | None:intergenic |
| ACCGATTGATAAACTCTCCA+AGG | 0.587479 | 4.1:-11410611 | None:intergenic |
| TTTATCAATCGGTTTCGGCA+TGG | 0.590347 | 4.1:+11410621 | MS.gene47933:CDS |
| AATAACGTGTATTACTGTGT+TGG | 0.590857 | 4.1:+11409700 | MS.gene47933:CDS |
| AGCTACTGCCAATGCAACCC+AGG | 0.591282 | 4.1:+11407409 | MS.gene47933:CDS |
| CCAGAGAGCTCCTGAATGAG+TGG | 0.591702 | 4.1:+11407357 | MS.gene47933:CDS |
| AAAAGATTCAGCTGTACAAG+TGG | 0.592478 | 4.1:+11409978 | MS.gene47933:CDS |
| TATTCGCACTATTCCATTGG+GGG | 0.593012 | 4.1:+11409474 | MS.gene47933:CDS |
| CCATATTCATAAGTGTCAAG+TGG | 0.594109 | 4.1:-11409643 | None:intergenic |
| TGCAATGGAAGTCTCCCCAA+GGG | 0.594926 | 4.1:-11404986 | None:intergenic |
| TTTGTGATGAGATTAAGGTC+AGG | 0.595391 | 4.1:-11408591 | None:intergenic |
| AAGAATACATACTGCTCATG+AGG | 0.595780 | 4.1:-11410741 | None:intergenic |
| AAGTGGGTGCTCCGGGAAGA+CGG | 0.597239 | 4.1:+11409995 | MS.gene47933:CDS |
| AAGGCGCCACTGATGAAGAA+CGG | 0.598090 | 4.1:+11410559 | MS.gene47933:CDS |
| TCTTCTTTGTGCGTTTGAAG+GGG | 0.600024 | 4.1:+11408650 | MS.gene47933:CDS |
| GTCAAAAGGATCATCTGTTG+AGG | 0.600103 | 4.1:-11406258 | None:intergenic |
| CTTTATGTTGAACACAAGCA+CGG | 0.604008 | 4.1:+11409065 | MS.gene47933:CDS |
| CGTGAATTACAGTCCGAATG+TGG | 0.606634 | 4.1:+11410022 | MS.gene47933:CDS |
| GCTTTATATGTGCAAACTAG+AGG | 0.606872 | 4.1:+11410064 | MS.gene47933:CDS |
| ATCACAAAGGAGCATTTAGG+AGG | 0.610354 | 4.1:+11408606 | MS.gene47933:CDS |
| ATCGGGATCAACTCTTCCAT+AGG | 0.610920 | 4.1:-11404722 | None:intergenic |
| CTCGATGATGATGTATACCT+TGG | 0.611867 | 4.1:+11410492 | MS.gene47933:CDS |
| TCAAAACAGTCTTGATAATG+GGG | 0.617072 | 4.1:+11404449 | MS.gene47933:CDS |
| TTTATGTTGAACACAAGCAC+GGG | 0.617201 | 4.1:+11409066 | MS.gene47933:CDS |
| TAAGAGATGGCCATCACCAA+GGG | 0.617601 | 4.1:-11409040 | None:intergenic |
| GGCGATGGAAGTTTCAGTTG+AGG | 0.620659 | 4.1:+11410941 | MS.gene47933:CDS |
| TCTCAAACAGGGTGAAACAC+AGG | 0.620922 | 4.1:+11401154 | MS.gene47933:intron |
| CTTATGTGGAAGTCTTGGAA+AGG | 0.622163 | 4.1:+11405907 | MS.gene47933:CDS |
| GACCTTGAAAGGCAAGGCCA+AGG | 0.622215 | 4.1:+11405969 | MS.gene47933:CDS |
| TGGAAAGGTATGTCAATTTG+GGG | 0.626097 | 4.1:+11405922 | MS.gene47933:CDS |
| TACCACACAGAAGTCAACAA+TGG | 0.626309 | 4.1:-11405946 | None:intergenic |
| GTGGTAGACCTTGAAAGGCA+AGG | 0.626438 | 4.1:+11405963 | MS.gene47933:CDS |
| AATATTAGCAATGAATCTCG+AGG | 0.628669 | 4.1:+11406316 | MS.gene47933:CDS |
| AGAACGGGGTCGTCTTGAAG+TGG | 0.628760 | 4.1:+11410575 | MS.gene47933:CDS |
| GCTTCAGTCAAACTTGAGGA+AGG | 0.634483 | 4.1:+11410770 | MS.gene47933:CDS |
| GTTGATTGTGAACTGCATCA+TGG | 0.634822 | 4.1:-11406397 | None:intergenic |
| TAAATGATCTCCACTGCTCG+TGG | 0.635705 | 4.1:-11410818 | None:intergenic |
| ATAAGCACACCACAGAGTGG+TGG | 0.635800 | 4.1:-11404495 | None:intergenic |
| AAGTCTGGTCATCCAGCAAG+CGG | 0.636118 | 4.1:-11409600 | None:intergenic |
| ATACTGCTCATGAGGAAGAG+AGG | 0.637193 | 4.1:-11410733 | None:intergenic |
| ACGACCCCGTTCTTCATCAG+TGG | 0.639453 | 4.1:-11410565 | None:intergenic |
| TTAAGAGATGGCCATCACCA+AGG | 0.643603 | 4.1:-11409041 | None:intergenic |
| ATATTCGCACTATTCCATTG+GGG | 0.646014 | 4.1:+11409473 | MS.gene47933:CDS |
| TAAGATGGATGAGATTTCCA+AGG | 0.648525 | 4.1:+11410920 | MS.gene47933:CDS |
| TTCAAGGTATCAAAGGAATG+TGG | 0.648680 | 4.1:+11406225 | MS.gene47933:CDS |
| AAAGATTCAGCTGTACAAGT+GGG | 0.651626 | 4.1:+11409979 | MS.gene47933:CDS |
| ATGCAATGGAAGTCTCCCCA+AGG | 0.653448 | 4.1:-11404987 | None:intergenic |
| GTCAGATGCAGCAAATACAT+GGG | 0.655484 | 4.1:-11409166 | None:intergenic |
| TATGGAAGAGTTGATCCCGA+TGG | 0.657170 | 4.1:+11404724 | MS.gene47933:CDS |
| ACATTTACTGAATAGTCTGA+CGG | 0.659621 | 4.1:-11407386 | None:intergenic |
| AAGCACACCACAGAGTGGTG+GGG | 0.659719 | 4.1:-11404493 | None:intergenic |
| ATACCTGTCGGGAAAAGCAG+CGG | 0.660425 | 4.1:-11409277 | None:intergenic |
| ATAAAGCCAGTATGTGCCCG+TGG | 0.667188 | 4.1:-11410048 | None:intergenic |
| TTGTCCAAAGCCAACTATCG+TGG | 0.667457 | 4.1:+11403546 | MS.gene47933:CDS |
| CGCTTGCCAGATTCCGACGT+AGG | 0.669993 | 4.1:+11410657 | MS.gene47933:CDS |
| TGAGGAAAATGAACCAACCA+AGG | 0.671084 | 4.1:+11409741 | MS.gene47933:CDS |
| GTGGCTGGTGAGTATCACCT+TGG | 0.674283 | 4.1:+11410594 | MS.gene47933:CDS |
| ACTTACCTTATAGATTAACA+AGG | 0.677737 | 4.1:-11410125 | None:intergenic |
| GCCCATTGTTGACTTCTGTG+TGG | 0.680795 | 4.1:+11405944 | MS.gene47933:CDS |
| TGATCGTATAGGAAGACCAA+CGG | 0.681863 | 4.1:+11401831 | MS.gene47933:CDS |
| AGTTGGAATCTGGCCTACGT+CGG | 0.682964 | 4.1:-11410670 | None:intergenic |
| TGACCTTAATCTCATCACAA+AGG | 0.685342 | 4.1:+11408593 | MS.gene47933:CDS |
| TCTGCCATCCAGATCAATGG+GGG | 0.693266 | 4.1:+11401801 | MS.gene47933:intron |
| AGAAATCCGAGCTTGTTACA+CGG | 0.698318 | 4.1:+11401234 | MS.gene47933:CDS |
| CAGTCCGAATGTGGACACCA+CGG | 0.701088 | 4.1:+11410031 | MS.gene47933:CDS |
| GCACAAAGAAGAACAGATCG+AGG | 0.713582 | 4.1:-11408639 | None:intergenic |
| GCAATGGAAGTCTCCCCAAG+GGG | 0.729886 | 4.1:-11404985 | None:intergenic |
| TTCTGCCATCCAGATCAATG+GGG | 0.734840 | 4.1:+11401800 | MS.gene47933:intron |
| TTCCATTACGAACAACACGT+AGG | 0.739243 | 4.1:-11406031 | None:intergenic |
| AACTGCATATGTATTGCCTG+AGG | 0.740158 | 4.1:+11409723 | MS.gene47933:CDS |
| TCTCAAAATAGAGCCCCTTG+GGG | 0.740613 | 4.1:+11404972 | MS.gene47933:CDS |
| ATAATAAGCACACCACAGAG+TGG | 0.754539 | 4.1:-11404498 | None:intergenic |
| GGCGCCACTGATGAAGAACG+GGG | 0.758258 | 4.1:+11410561 | MS.gene47933:CDS |
| CAAGGTATACATCATCATCG+AGG | 0.761046 | 4.1:-11410491 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 11400194 | 11411004 | 11400194 | ID=MS.gene47933 |
| chr4.1 | mRNA | 11400194 | 11411004 | 11400194 | ID=MS.gene47933.t1;Parent=MS.gene47933 |
| chr4.1 | exon | 11400194 | 11400242 | 11400194 | ID=MS.gene47933.t1.exon1;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11400194 | 11400242 | 11400194 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11400986 | 11401045 | 11400986 | ID=MS.gene47933.t1.exon2;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11400986 | 11401045 | 11400986 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11401164 | 11401255 | 11401164 | ID=MS.gene47933.t1.exon3;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11401164 | 11401255 | 11401164 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11401813 | 11401864 | 11401813 | ID=MS.gene47933.t1.exon4;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11401813 | 11401864 | 11401813 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11402006 | 11402068 | 11402006 | ID=MS.gene47933.t1.exon5;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11402006 | 11402068 | 11402006 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11402184 | 11402233 | 11402184 | ID=MS.gene47933.t1.exon6;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11402184 | 11402233 | 11402184 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11403504 | 11403579 | 11403504 | ID=MS.gene47933.t1.exon7;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11403504 | 11403579 | 11403504 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11404372 | 11404581 | 11404372 | ID=MS.gene47933.t1.exon8;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11404372 | 11404581 | 11404372 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11404709 | 11404815 | 11404709 | ID=MS.gene47933.t1.exon9;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11404709 | 11404815 | 11404709 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11404963 | 11405071 | 11404963 | ID=MS.gene47933.t1.exon10;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11404963 | 11405071 | 11404963 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11405870 | 11406070 | 11405870 | ID=MS.gene47933.t1.exon11;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11405870 | 11406070 | 11405870 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11406212 | 11406427 | 11406212 | ID=MS.gene47933.t1.exon12;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11406212 | 11406427 | 11406212 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11407320 | 11407430 | 11407320 | ID=MS.gene47933.t1.exon13;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11407320 | 11407430 | 11407320 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11408396 | 11408671 | 11408396 | ID=MS.gene47933.t1.exon14;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11408396 | 11408671 | 11408396 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11409021 | 11409295 | 11409021 | ID=MS.gene47933.t1.exon15;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11409021 | 11409295 | 11409021 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11409411 | 11409762 | 11409411 | ID=MS.gene47933.t1.exon16;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11409411 | 11409762 | 11409411 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11409857 | 11410141 | 11409857 | ID=MS.gene47933.t1.exon17;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11409857 | 11410141 | 11409857 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| chr4.1 | exon | 11410423 | 11411004 | 11410423 | ID=MS.gene47933.t1.exon18;Parent=MS.gene47933.t1 |
| chr4.1 | CDS | 11410423 | 11411004 | 11410423 | ID=cds.MS.gene47933.t1;Parent=MS.gene47933.t1 |
| Gene Sequence |
| Protein sequence |
