Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50756.t1 | XP_003606958.1 | 100 | 80 | 0 | 0 | 28 | 107 | 28 | 107 | 2.20E-34 | 154.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50756.t1 | Q9SIK2 | 93.8 | 80 | 5 | 0 | 28 | 107 | 29 | 108 | 1.7e-35 | 149.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50756.t1 | B7FH10 | 100.0 | 80 | 0 | 0 | 28 | 107 | 28 | 107 | 1.6e-34 | 154.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049361 | MS.gene50756 | 0.818877 | 1.56E-52 | -1.69E-46 |
| MS.gene049387 | MS.gene50756 | 0.861421 | 1.04E-63 | -1.69E-46 |
| MS.gene050134 | MS.gene50756 | 0.902144 | 1.31E-78 | -1.69E-46 |
| MS.gene050252 | MS.gene50756 | 0.85734 | 1.74E-62 | -1.69E-46 |
| MS.gene050638 | MS.gene50756 | -0.846628 | 1.93E-59 | -1.69E-46 |
| MS.gene050791 | MS.gene50756 | 0.857576 | 1.49E-62 | -1.69E-46 |
| MS.gene050912 | MS.gene50756 | 0.843333 | 1.49E-58 | -1.69E-46 |
| MS.gene051904 | MS.gene50756 | 0.847927 | 8.48E-60 | -1.69E-46 |
| MS.gene051984 | MS.gene50756 | 0.831932 | 1.26E-55 | -1.69E-46 |
| MS.gene052412 | MS.gene50756 | 0.814841 | 1.25E-51 | -1.69E-46 |
| MS.gene052664 | MS.gene50756 | 0.898867 | 3.48E-77 | -1.69E-46 |
| MS.gene052666 | MS.gene50756 | 0.903837 | 2.30E-79 | -1.69E-46 |
| MS.gene053224 | MS.gene50756 | 0.891561 | 3.55E-74 | -1.69E-46 |
| MS.gene057237 | MS.gene50756 | 0.828379 | 9.29E-55 | -1.69E-46 |
| MS.gene057272 | MS.gene50756 | 0.888694 | 4.70E-73 | -1.69E-46 |
| MS.gene057641 | MS.gene50756 | 0.933818 | 1.05E-95 | -1.69E-46 |
| MS.gene057643 | MS.gene50756 | 0.991257 | 1.07E-186 | -1.69E-46 |
| MS.gene059340 | MS.gene50756 | 0.853586 | 2.17E-61 | -1.69E-46 |
| MS.gene059878 | MS.gene50756 | 0.825633 | 4.21E-54 | -1.69E-46 |
| MS.gene059880 | MS.gene50756 | 0.831399 | 1.71E-55 | -1.69E-46 |
| MS.gene060432 | MS.gene50756 | 0.83419 | 3.46E-56 | -1.69E-46 |
| MS.gene060483 | MS.gene50756 | 0.89715 | 1.86E-76 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50756.t1 | MTR_4g070600 | 100.000 | 107 | 0 | 0 | 1 | 107 | 1 | 107 | 1.06e-74 | 216 |
| MS.gene50756.t1 | MTR_2g086610 | 99.065 | 107 | 1 | 0 | 1 | 107 | 1 | 107 | 2.56e-74 | 215 |
| MS.gene50756.t1 | MTR_4g070600 | 99.065 | 107 | 0 | 1 | 1 | 107 | 1 | 106 | 3.00e-72 | 210 |
| MS.gene50756.t1 | MTR_6g015615 | 80.556 | 72 | 4 | 2 | 2 | 72 | 13 | 75 | 2.31e-17 | 70.9 |
| MS.gene50756.t1 | MTR_3g117040 | 80.556 | 72 | 4 | 2 | 2 | 72 | 13 | 75 | 2.31e-17 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50756.t1 | AT2G21580 | 92.593 | 108 | 7 | 1 | 1 | 107 | 1 | 108 | 6.71e-54 | 164 |
| MS.gene50756.t1 | AT4G39200 | 89.815 | 108 | 10 | 1 | 1 | 107 | 1 | 108 | 2.45e-52 | 160 |
| MS.gene50756.t1 | AT2G21580 | 88.889 | 108 | 10 | 2 | 1 | 107 | 1 | 107 | 3.02e-52 | 159 |
| MS.gene50756.t1 | AT4G39200 | 87.963 | 108 | 11 | 2 | 1 | 107 | 1 | 107 | 1.13e-50 | 155 |
| MS.gene50756.t1 | AT4G34555 | 89.720 | 107 | 10 | 1 | 1 | 106 | 1 | 107 | 3.02e-50 | 154 |
| MS.gene50756.t1 | AT2G16360 | 86.667 | 105 | 13 | 1 | 2 | 105 | 2 | 106 | 1.08e-46 | 145 |
Find 38 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGGTCTATGCAGATTAA+TGG | 0.196241 | 4.3:+34427497 | MS.gene50756:intron |
| AGGAGTGATGAGCTTGTATT+TGG | 0.258319 | 4.3:-34426246 | None:intergenic |
| CTGTTTGCCACCGCCAGATT+TGG | 0.259942 | 4.3:-34425329 | None:intergenic |
| GGAGGAGGAGCTGCCTTCTT+GGG | 0.308666 | 4.3:-34425292 | None:intergenic |
| TCCTCCAAGCCAGCCAAATC+TGG | 0.317280 | 4.3:+34425316 | MS.gene50756:CDS |
| ACCGCCAGATTTGGCTGGCT+TGG | 0.348344 | 4.3:-34425320 | None:intergenic |
| AGGAGGAGGAGCTGCCTTCT+TGG | 0.379715 | 4.3:-34425293 | None:intergenic |
| TGATGGCTAAAGGTTTAATC+AGG | 0.382324 | 4.3:+34427549 | MS.gene50756:CDS |
| CTGTCCTCTCTGATCGTTTG+AGG | 0.389732 | 4.3:+34426270 | MS.gene50756:CDS |
| GAGGGCTATAAGAGACTTGA+TGG | 0.404889 | 4.3:+34427532 | MS.gene50756:CDS |
| CACCTAGGTGTTTGTAGCCC+TGG | 0.406263 | 4.3:-34427606 | None:intergenic |
| TTGCCACCGCCAGATTTGGC+TGG | 0.423311 | 4.3:-34425325 | None:intergenic |
| CAACATGGTGCTGTTTGATC+AGG | 0.424061 | 4.3:+34426193 | MS.gene50756:CDS |
| TGTCCTCTCTGATCGTTTGA+GGG | 0.452861 | 4.3:+34426271 | MS.gene50756:CDS |
| GCCAGATTTGGCTGGCTTGG+AGG | 0.465517 | 4.3:-34425317 | None:intergenic |
| ATAAGAGACTTGATGGCTAA+AGG | 0.477465 | 4.3:+34427539 | MS.gene50756:CDS |
| GTGGAGCAAGGGAAAGCAAA+AGG | 0.500179 | 4.3:+34426160 | MS.gene50756:CDS |
| GCTGGCTTGGAGGAAGGAGG+AGG | 0.501135 | 4.3:-34425307 | None:intergenic |
| TTCAGTTAAGAGCTTGTCAT+AGG | 0.503535 | 4.3:-34426219 | None:intergenic |
| GGCTAAAGGTTTAATCAGGT+TGG | 0.524410 | 4.3:+34427553 | MS.gene50756:CDS |
| TAATGGATCACTTGCAAGGA+GGG | 0.537201 | 4.3:+34427514 | MS.gene50756:CDS |
| GATTTGGCTGGCTTGGAGGA+AGG | 0.542704 | 4.3:-34425313 | None:intergenic |
| CAAGTCAGCAGATTTACACC+AGG | 0.557612 | 4.3:+34427588 | MS.gene50756:CDS |
| TGTTTAACAGAAGTGGAGCA+AGG | 0.569376 | 4.3:+34426148 | MS.gene50756:intron |
| AAGCCAGCCAAATCTGGCGG+TGG | 0.569616 | 4.3:+34425322 | MS.gene50756:CDS |
| GGAGTGATGAGCTTGTATTT+GGG | 0.571965 | 4.3:-34426245 | None:intergenic |
| AAACGATCAGAGAGGACAGA+AGG | 0.576753 | 4.3:-34426266 | None:intergenic |
| TTGGCTGGCTTGGAGGAAGG+AGG | 0.587842 | 4.3:-34425310 | None:intergenic |
| CGGTGGCAAACAGAAGAAGA+AGG | 0.599544 | 4.3:+34425339 | MS.gene50756:CDS |
| GTTTAACAGAAGTGGAGCAA+GGG | 0.616121 | 4.3:+34426149 | MS.gene50756:intron |
| AACATGGTGCTGTTTGATCA+GGG | 0.617310 | 4.3:+34426194 | MS.gene50756:CDS |
| TCCAAGCCAGCCAAATCTGG+CGG | 0.632166 | 4.3:+34425319 | MS.gene50756:CDS |
| AGATTAATGGATCACTTGCA+AGG | 0.633639 | 4.3:+34427510 | MS.gene50756:intron |
| AAGTCAGCAGATTTACACCA+GGG | 0.688410 | 4.3:+34427589 | MS.gene50756:CDS |
| TTAATGGATCACTTGCAAGG+AGG | 0.700095 | 4.3:+34427513 | MS.gene50756:CDS |
| CACCAGGGCTACAAACACCT+AGG | 0.701247 | 4.3:+34427604 | MS.gene50756:CDS |
| AAAGGAGAAAGTGAACAACA+TGG | 0.737054 | 4.3:+34426178 | MS.gene50756:CDS |
| TTACCCTCAAACGATCAGAG+AGG | 0.790654 | 4.3:-34426274 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTGATGAATTAAATTT+TGG | - | chr4.3:34427466-34427485 | None:intergenic | 10.0% |
| !!! | TTTAATTTTTAAATTAGCAT+TGG | - | chr4.3:34426067-34426086 | None:intergenic | 10.0% |
| !! | ATAAACAATTAAATCTAAAC+AGG | - | chr4.3:34425483-34425502 | None:intergenic | 15.0% |
| !!! | TTTTGTATAATCTATTTCTA+AGG | - | chr4.3:34425921-34425940 | None:intergenic | 15.0% |
| !! | AAAAAAAAAACTTTACCACA+CGG | - | chr4.3:34425971-34425990 | None:intergenic | 20.0% |
| !! | AAACTAGTAATGAAAATCAT+AGG | - | chr4.3:34426619-34426638 | None:intergenic | 20.0% |
| !! | ACTAAATATTTGTGACTAAA+AGG | + | chr4.3:34427427-34427446 | MS.gene50756:intron | 20.0% |
| !! | CTAAATATTTGTGACTAAAA+GGG | + | chr4.3:34427428-34427447 | MS.gene50756:intron | 20.0% |
| !! | TAAGTACAAGAAAAGTTAAA+AGG | - | chr4.3:34425376-34425395 | None:intergenic | 20.0% |
| !!! | AAGATAATAACTGCAATTTT+CGG | - | chr4.3:34427045-34427064 | None:intergenic | 20.0% |
| !!! | AATAATGAATATGTCTTTTG+TGG | + | chr4.3:34427480-34427499 | MS.gene50756:intron | 20.0% |
| !!! | AATTTAATTTTTGGCCTTTT+TGG | + | chr4.3:34425604-34425623 | MS.gene50756:intron | 20.0% |
| !!! | ACACAAATTTAAGTTGATAA+TGG | + | chr4.3:34427100-34427119 | MS.gene50756:intron | 20.0% |
| !!! | TGATTTGTTAGTGATATTAA+GGG | + | chr4.3:34426115-34426134 | MS.gene50756:intron | 20.0% |
| ! | AAAAAGCTGTTAATCCAAAA+AGG | - | chr4.3:34425621-34425640 | None:intergenic | 25.0% |
| ! | AAATGAACTTAAAATGCACA+AGG | - | chr4.3:34427214-34427233 | None:intergenic | 25.0% |
| ! | AATGACAACGATGAAATTTA+AGG | - | chr4.3:34427151-34427170 | None:intergenic | 25.0% |
| ! | AATGTCATCATAAAGTAAAG+AGG | + | chr4.3:34427125-34427144 | MS.gene50756:intron | 25.0% |
| ! | AGAAGATGAAATGTTAACTA+GGG | + | chr4.3:34426966-34426985 | MS.gene50756:intron | 25.0% |
| ! | ATGTTAAAAGCTTATGTAAG+TGG | - | chr4.3:34425506-34425525 | None:intergenic | 25.0% |
| ! | CTAAATCACAGAACATATAT+TGG | + | chr4.3:34426733-34426752 | MS.gene50756:intron | 25.0% |
| ! | CTTACACCAAATAATACATT+AGG | - | chr4.3:34427289-34427308 | None:intergenic | 25.0% |
| ! | CTTTAGTTGTAAAAATGTTG+TGG | + | chr4.3:34427316-34427335 | MS.gene50756:intron | 25.0% |
| ! | TCTTGAAGATTCTATTGTTT+AGG | + | chr4.3:34427061-34427080 | MS.gene50756:intron | 25.0% |
| !! | GAAAACAACGAATTTTCAAT+CGG | - | chr4.3:34426045-34426064 | None:intergenic | 25.0% |
| !! | TTTACTAATGCCTTTTCTTA+TGG | + | chr4.3:34426301-34426320 | MS.gene50756:intron | 25.0% |
| !!! | AAATTTTTCAGTCCTAGTAT+TGG | + | chr4.3:34426510-34426529 | MS.gene50756:intron | 25.0% |
| !!! | AGTTGTTTTGTAAGCTATAT+TGG | + | chr4.3:34425756-34425775 | MS.gene50756:intron | 25.0% |
| !!! | GTGATTTGTTAGTGATATTA+AGG | + | chr4.3:34426114-34426133 | MS.gene50756:intron | 25.0% |
| !!! | GTTCATTTTTTTGCAATCTT+AGG | + | chr4.3:34427226-34427245 | MS.gene50756:intron | 25.0% |
| !!! | TTTTTTGTGTTTAACAGAAG+TGG | + | chr4.3:34426141-34426160 | MS.gene50756:intron | 25.0% |
| AAACTAATTCCACCAATACT+AGG | - | chr4.3:34426525-34426544 | None:intergenic | 30.0% | |
| AAATCATAGGTTCAATACAG+TGG | - | chr4.3:34426606-34426625 | None:intergenic | 30.0% | |
| AGAACATTAAGGCTAAAAAG+TGG | - | chr4.3:34426648-34426667 | None:intergenic | 30.0% | |
| ATATTAAACAGACCAAAACG+CGG | - | chr4.3:34426673-34426692 | None:intergenic | 30.0% | |
| ATGAATTACAGAGATGAGTA+TGG | - | chr4.3:34425260-34425279 | None:intergenic | 30.0% | |
| CTAGGACTGAAAAATTTAGA+TGG | - | chr4.3:34426507-34426526 | None:intergenic | 30.0% | |
| GAGAAGATGAAATGTTAACT+AGG | + | chr4.3:34426965-34426984 | MS.gene50756:intron | 30.0% | |
| GTTTGGCCTAATGTATTATT+TGG | + | chr4.3:34427280-34427299 | MS.gene50756:intron | 30.0% | |
| TCTAACAAAACTTATGCAAG+TGG | + | chr4.3:34425852-34425871 | MS.gene50756:intron | 30.0% | |
| TTAAGAGATGCTCATTTCTA+GGG | + | chr4.3:34426797-34426816 | MS.gene50756:intron | 30.0% | |
| TTATACCACACCATAAGAAA+AGG | - | chr4.3:34426314-34426333 | None:intergenic | 30.0% | |
| TTTAAGAGATGCTCATTTCT+AGG | + | chr4.3:34426796-34426815 | MS.gene50756:intron | 30.0% | |
| ! | ATGTTTTCACAAAGTAACTG+AGG | - | chr4.3:34426858-34426877 | None:intergenic | 30.0% |
| ! | CTCCTGTGAATGAATTTTAT+GGG | + | chr4.3:34425457-34425476 | MS.gene50756:intron | 30.0% |
| ! | TCTGGACTTGTTTATAAGTT+TGG | + | chr4.3:34427263-34427282 | MS.gene50756:intron | 30.0% |
| !! | TTTCTAGGGCAATATGTATT+TGG | + | chr4.3:34426811-34426830 | MS.gene50756:intron | 30.0% |
| !!! | CTCTGTAATTCATTTTTTGC+AGG | + | chr4.3:34425267-34425286 | MS.gene50756:intron | 30.0% |
| AAAACGCGGATAGAACATTA+AGG | - | chr4.3:34426659-34426678 | None:intergenic | 35.0% | |
| AAAATGATGAGCATCAGGAT+AGG | - | chr4.3:34426458-34426477 | None:intergenic | 35.0% | |
| AAACATCACTGTAAATGCAG+AGG | - | chr4.3:34427178-34427197 | None:intergenic | 35.0% | |
| AAAGGAGAAAGTGAACAACA+TGG | + | chr4.3:34426178-34426197 | MS.gene50756:CDS | 35.0% | |
| CAAAAGATTAAGCGCATGTT+TGG | - | chr4.3:34425898-34425917 | None:intergenic | 35.0% | |
| CTTGAAAAATGATGAGCATC+AGG | - | chr4.3:34426463-34426482 | None:intergenic | 35.0% | |
| GCCATTTAGCACAAAAATTC+TGG | - | chr4.3:34426714-34426733 | None:intergenic | 35.0% | |
| GTATGCGTGCATTATTATGT+TGG | + | chr4.3:34426357-34426376 | MS.gene50756:intron | 35.0% | |
| TGATGGCTAAAGGTTTAATC+AGG | + | chr4.3:34427549-34427568 | MS.gene50756:CDS | 35.0% | |
| TTCAGTTAAGAGCTTGTCAT+AGG | - | chr4.3:34426222-34426241 | None:intergenic | 35.0% | |
| TTGTGGTCTATGCAGATTAA+TGG | + | chr4.3:34427497-34427516 | MS.gene50756:intron | 35.0% | |
| ! | AACTGCAATTTTCGGAAACA+GGG | - | chr4.3:34427037-34427056 | None:intergenic | 35.0% |
| ! | AGATTAATGGATCACTTGCA+AGG | + | chr4.3:34427510-34427529 | MS.gene50756:intron | 35.0% |
| ! | ATAAGAGACTTGATGGCTAA+AGG | + | chr4.3:34427539-34427558 | MS.gene50756:CDS | 35.0% |
| ! | ATTTTCGGAAACAGGGAAAA+TGG | - | chr4.3:34427030-34427049 | None:intergenic | 35.0% |
| ! | CTCTTGTATTGTTGTTCAAG+TGG | + | chr4.3:34426559-34426578 | MS.gene50756:intron | 35.0% |
| ! | GCCAGAATTTTTGTGCTAAA+TGG | + | chr4.3:34426710-34426729 | MS.gene50756:intron | 35.0% |
| ! | GCTCCTGTGAATGAATTTTA+TGG | + | chr4.3:34425456-34425475 | MS.gene50756:intron | 35.0% |
| ! | GGCTTTTTGAACAATCTCTT+TGG | + | chr4.3:34426016-34426035 | MS.gene50756:intron | 35.0% |
| ! | TAACTGCAATTTTCGGAAAC+AGG | - | chr4.3:34427038-34427057 | None:intergenic | 35.0% |
| ! | TAATGCCTTTTCTTATGGTG+TGG | + | chr4.3:34426306-34426325 | MS.gene50756:intron | 35.0% |
| ! | TTAATGTTCTATCCGCGTTT+TGG | + | chr4.3:34426658-34426677 | MS.gene50756:intron | 35.0% |
| ! | TTTTGGCAAAATGATTGCTC+TGG | + | chr4.3:34425995-34426014 | MS.gene50756:intron | 35.0% |
| !! | TAGGTGTCATTCTAAGTTTC+TGG | + | chr4.3:34427245-34427264 | MS.gene50756:intron | 35.0% |
| !! | TTTTTCAGTCCTAGTATTGG+TGG | + | chr4.3:34426513-34426532 | MS.gene50756:intron | 35.0% |
| AACTTTACCACACGGCATTA+AGG | - | chr4.3:34425963-34425982 | None:intergenic | 40.0% | |
| AAGTCAGCAGATTTACACCA+GGG | + | chr4.3:34427589-34427608 | MS.gene50756:CDS | 40.0% | |
| AGGAGTGATGAGCTTGTATT+TGG | - | chr4.3:34426249-34426268 | None:intergenic | 40.0% | |
| CTAGGGCAATATGTATTTGG+AGG | + | chr4.3:34426814-34426833 | MS.gene50756:intron | 40.0% | |
| GGAGTGATGAGCTTGTATTT+GGG | - | chr4.3:34426248-34426267 | None:intergenic | 40.0% | |
| GGCCCATAAAATTCATTCAC+AGG | - | chr4.3:34425462-34425481 | None:intergenic | 40.0% | |
| GGCTAAAGGTTTAATCAGGT+TGG | + | chr4.3:34427553-34427572 | MS.gene50756:CDS | 40.0% | |
| GTTTAACAGAAGTGGAGCAA+GGG | + | chr4.3:34426149-34426168 | MS.gene50756:intron | 40.0% | |
| TGTTTAACAGAAGTGGAGCA+AGG | + | chr4.3:34426148-34426167 | MS.gene50756:intron | 40.0% | |
| TTATCTTCCTTAATGCCGTG+TGG | + | chr4.3:34425953-34425972 | MS.gene50756:intron | 40.0% | |
| ! | GGCTCGTATTTTCTGATAAG+TGG | + | chr4.3:34426580-34426599 | MS.gene50756:intron | 40.0% |
| ! | TAATGGATCACTTGCAAGGA+GGG | + | chr4.3:34427514-34427533 | MS.gene50756:CDS | 40.0% |
| ! | TTAATGGATCACTTGCAAGG+AGG | + | chr4.3:34427513-34427532 | MS.gene50756:CDS | 40.0% |
| !! | AACATGGTGCTGTTTGATCA+GGG | + | chr4.3:34426194-34426213 | MS.gene50756:CDS | 40.0% |
| !! | GGAGGTGTTTCTGAGAATAT+AGG | + | chr4.3:34426832-34426851 | MS.gene50756:intron | 40.0% |
| AAACGATCAGAGAGGACAGA+AGG | - | chr4.3:34426269-34426288 | None:intergenic | 45.0% | |
| CAAGTCAGCAGATTTACACC+AGG | + | chr4.3:34427588-34427607 | MS.gene50756:CDS | 45.0% | |
| CATCACTGTAAATGCAGAGG+TGG | - | chr4.3:34427175-34427194 | None:intergenic | 45.0% | |
| GAGGGCTATAAGAGACTTGA+TGG | + | chr4.3:34427532-34427551 | MS.gene50756:CDS | 45.0% | |
| TCTAGTGTGATGCACACCTT+TGG | + | chr4.3:34427371-34427390 | MS.gene50756:intron | 45.0% | |
| TGTCCTCTCTGATCGTTTGA+GGG | + | chr4.3:34426271-34426290 | MS.gene50756:CDS | 45.0% | |
| TTACCCTCAAACGATCAGAG+AGG | - | chr4.3:34426277-34426296 | None:intergenic | 45.0% | |
| ! | GTGAAAGTGCAAGCAACCAA+AGG | - | chr4.3:34427390-34427409 | None:intergenic | 45.0% |
| !! | CAACATGGTGCTGTTTGATC+AGG | + | chr4.3:34426193-34426212 | MS.gene50756:CDS | 45.0% |
| !!! | TTTTTTGCAGGCACCCAAGA+AGG | + | chr4.3:34425279-34425298 | MS.gene50756:intron | 45.0% |
| !!! | AAACAATTAAATTTAATTTT+TGG | + | chr4.3:34425595-34425614 | MS.gene50756:intron | 5.0% |
| !!! | AAGTTTTTTTTTTTTTTTTT+TGG | + | chr4.3:34425978-34425997 | MS.gene50756:intron | 5.0% |
| CGGTGGCAAACAGAAGAAGA+AGG | + | chr4.3:34425339-34425358 | MS.gene50756:CDS | 50.0% | |
| CTGTCCTCTCTGATCGTTTG+AGG | + | chr4.3:34426270-34426289 | MS.gene50756:CDS | 50.0% | |
| GTGGAGCAAGGGAAAGCAAA+AGG | + | chr4.3:34426160-34426179 | MS.gene50756:CDS | 50.0% | |
| CTGTTTGCCACCGCCAGATT+TGG | - | chr4.3:34425332-34425351 | None:intergenic | 55.0% | |
| TCCAAGCCAGCCAAATCTGG+CGG | + | chr4.3:34425319-34425338 | MS.gene50756:CDS | 55.0% | |
| TCCTCCAAGCCAGCCAAATC+TGG | + | chr4.3:34425316-34425335 | MS.gene50756:CDS | 55.0% | |
| !! | GATTTGGCTGGCTTGGAGGA+AGG | - | chr4.3:34425316-34425335 | None:intergenic | 55.0% |
| AAGCCAGCCAAATCTGGCGG+TGG | + | chr4.3:34425322-34425341 | MS.gene50756:CDS | 60.0% | |
| AGGAGGAGGAGCTGCCTTCT+TGG | - | chr4.3:34425296-34425315 | None:intergenic | 60.0% | |
| GGAGGAGGAGCTGCCTTCTT+GGG | - | chr4.3:34425295-34425314 | None:intergenic | 60.0% | |
| TTGCCACCGCCAGATTTGGC+TGG | - | chr4.3:34425328-34425347 | None:intergenic | 60.0% | |
| ! | ACCGCCAGATTTGGCTGGCT+TGG | - | chr4.3:34425323-34425342 | None:intergenic | 60.0% |
| !! | GCCAGATTTGGCTGGCTTGG+AGG | - | chr4.3:34425320-34425339 | None:intergenic | 60.0% |
| !! | TTGGCTGGCTTGGAGGAAGG+AGG | - | chr4.3:34425313-34425332 | None:intergenic | 60.0% |
| !! | GCTGGCTTGGAGGAAGGAGG+AGG | - | chr4.3:34425310-34425329 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 34425204 | 34427625 | 34425204 | ID=MS.gene50756 |
| chr4.3 | mRNA | 34425204 | 34427625 | 34425204 | ID=MS.gene50756.t1;Parent=MS.gene50756 |
| chr4.3 | exon | 34425204 | 34425206 | 34425204 | ID=MS.gene50756.t1.exon1;Parent=MS.gene50756.t1 |
| chr4.3 | CDS | 34425204 | 34425206 | 34425204 | ID=cds.MS.gene50756.t1;Parent=MS.gene50756.t1 |
| chr4.3 | exon | 34425289 | 34425360 | 34425289 | ID=MS.gene50756.t1.exon2;Parent=MS.gene50756.t1 |
| chr4.3 | CDS | 34425289 | 34425360 | 34425289 | ID=cds.MS.gene50756.t1;Parent=MS.gene50756.t1 |
| chr4.3 | exon | 34426158 | 34426292 | 34426158 | ID=MS.gene50756.t1.exon3;Parent=MS.gene50756.t1 |
| chr4.3 | CDS | 34426158 | 34426292 | 34426158 | ID=cds.MS.gene50756.t1;Parent=MS.gene50756.t1 |
| chr4.3 | exon | 34427512 | 34427625 | 34427512 | ID=MS.gene50756.t1.exon4;Parent=MS.gene50756.t1 |
| chr4.3 | CDS | 34427512 | 34427625 | 34427512 | ID=cds.MS.gene50756.t1;Parent=MS.gene50756.t1 |
| Gene Sequence |
| Protein sequence |
