Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059880.t1 | XP_013465818.1 | 96.2 | 319 | 10 | 1 | 1 | 319 | 1 | 317 | 1.50E-176 | 628.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059880.t1 | Q9C928 | 77.0 | 317 | 71 | 1 | 3 | 319 | 4 | 318 | 3.0e-144 | 512.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059880.t1 | A0A072VCY8 | 96.2 | 319 | 10 | 1 | 1 | 319 | 1 | 317 | 1.1e-176 | 628.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050252 | MS.gene059880 | 0.805618 | 1.22E-49 | -1.69E-46 |
| MS.gene057643 | MS.gene059880 | 0.820404 | 6.98E-53 | -1.69E-46 |
| MS.gene058994 | MS.gene059880 | 0.841177 | 5.56E-58 | -1.69E-46 |
| MS.gene059878 | MS.gene059880 | 0.99478 | 3.90E-210 | -1.69E-46 |
| MS.gene059880 | MS.gene066811 | 0.808425 | 3.12E-50 | -1.69E-46 |
| MS.gene059880 | MS.gene27003 | 0.814803 | 1.28E-51 | -1.69E-46 |
| MS.gene059880 | MS.gene27265 | 0.839573 | 1.46E-57 | -1.69E-46 |
| MS.gene059880 | MS.gene50756 | 0.831399 | 1.71E-55 | -1.69E-46 |
| MS.gene059880 | MS.gene90360 | 0.97975 | 1.17E-148 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059880.t1 | MTR_1g012990 | 98.119 | 319 | 4 | 1 | 1 | 319 | 1 | 317 | 0.0 | 646 |
| MS.gene059880.t1 | MTR_7g069430 | 97.179 | 319 | 5 | 1 | 1 | 319 | 1 | 315 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059880.t1 | AT3G15460 | 79.062 | 320 | 60 | 3 | 1 | 319 | 1 | 314 | 0.0 | 523 |
| MS.gene059880.t1 | AT1G52930 | 78.125 | 320 | 67 | 2 | 1 | 319 | 1 | 318 | 0.0 | 504 |
Find 69 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTAGGCGTATTGTTTAT+AGG | 0.224171 | 2.4:+17537775 | MS.gene059880:CDS |
| CAATTGTTGATGACCATATA+TGG | 0.275985 | 2.4:+17539825 | MS.gene059880:CDS |
| AAAATATTCGGTGGCAGTTT+TGG | 0.276214 | 2.4:+17540873 | MS.gene059880:CDS |
| CGCTTTGCAGAAGAAGAAAA+AGG | 0.301141 | 2.4:+17541054 | MS.gene059880:CDS |
| ATGGAGGAATTGAAGCTTAC+TGG | 0.304877 | 2.4:+17539165 | MS.gene059880:CDS |
| TGGTTTGGCGACACATATAA+TGG | 0.307289 | 2.4:-17540918 | None:intergenic |
| GAGACCAGTGAGGACCCTTT+TGG | 0.316595 | 2.4:+17537656 | MS.gene059880:CDS |
| GGTAATTTCGGAACCATATA+TGG | 0.326418 | 2.4:-17539838 | None:intergenic |
| TGCATACTGGAAACTGTTAA+AGG | 0.335855 | 2.4:+17539245 | MS.gene059880:CDS |
| AGACACAAACCTGGTAATTT+CGG | 0.336053 | 2.4:-17539850 | None:intergenic |
| TTGAATCCAATTAAAATATT+CGG | 0.338246 | 2.4:+17540861 | MS.gene059880:CDS |
| TGAGAATGAAGTCGAGGTTA+AGG | 0.351881 | 2.4:+17537701 | MS.gene059880:CDS |
| GTTAAAGGAGATGCTGTTAC+AGG | 0.353959 | 2.4:+17539260 | MS.gene059880:CDS |
| TTCTCTTTGTTCCTGAATAC+AGG | 0.355373 | 2.4:-17537738 | None:intergenic |
| ATGGTGCTTCACCTGTATTC+AGG | 0.357859 | 2.4:+17537727 | MS.gene059880:CDS |
| GCTTCTGCCTCATTGCAAAA+AGG | 0.366733 | 2.4:+17538312 | MS.gene059880:CDS |
| CTTACTGGGAATCACCTAAA+AGG | 0.369692 | 2.4:+17539180 | MS.gene059880:CDS |
| AGGGTCCTCACTGGTCTCTC+TGG | 0.383639 | 2.4:-17537651 | None:intergenic |
| GGAAAGGCTTAGCCTTTCTA+TGG | 0.386528 | 2.4:-17539781 | None:intergenic |
| ATAATGGTCATTACCTGGTT+TGG | 0.399636 | 2.4:-17540933 | None:intergenic |
| CAGGAACAAAGAGAAAGTTT+TGG | 0.404050 | 2.4:+17537746 | MS.gene059880:CDS |
| AATTTAACAGACGGACCGTT+GGG | 0.405139 | 2.4:-17538936 | None:intergenic |
| AGCTGTGGCTGTGCCCAAAA+AGG | 0.410300 | 2.4:+17537617 | MS.gene059880:CDS |
| CACATATCTGCAAACTCATC+AGG | 0.414305 | 2.4:-17541148 | None:intergenic |
| TTAGCCTTTCTATGGTCCTT+CGG | 0.432964 | 2.4:-17539773 | None:intergenic |
| GAGCTCAACAAGCTCGTTCA+AGG | 0.438472 | 2.4:-17538371 | None:intergenic |
| GGCTGGAACATTTGCAAAGA+AGG | 0.442018 | 2.4:+17541075 | MS.gene059880:CDS |
| AATGGATTCTCATATAAAGT+TGG | 0.442109 | 2.4:-17540900 | None:intergenic |
| TCTTATCCTTCCATCCCAAA+AGG | 0.448553 | 2.4:-17537671 | None:intergenic |
| GCATGAGATGGCCAATCCTC+TGG | 0.463080 | 2.4:+17541123 | MS.gene059880:CDS |
| ATGGATTCTCATATAAAGTT+GGG | 0.466075 | 2.4:-17540899 | None:intergenic |
| AGGCAAAAGATCTTTATCTC+TGG | 0.470351 | 2.4:+17538901 | MS.gene059880:CDS |
| TGATAAAATGACATTGATTG+AGG | 0.479641 | 2.4:+17540737 | MS.gene059880:CDS |
| CTCATCAGGCTCCAGAGGAT+TGG | 0.500537 | 2.4:-17541134 | None:intergenic |
| CCGACATTTGATGTTGAACC+TGG | 0.503744 | 2.4:+17538285 | MS.gene059880:CDS |
| TTTGATGAAAATGTCAAAAG+AGG | 0.513130 | 2.4:-17539210 | None:intergenic |
| TATATGGTTCCGAAATTACC+AGG | 0.519157 | 2.4:+17539841 | MS.gene059880:CDS |
| TGGAGGAATTGAAGCTTACT+GGG | 0.524362 | 2.4:+17539166 | MS.gene059880:CDS |
| CTTATCCTTCCATCCCAAAA+GGG | 0.530204 | 2.4:-17537670 | None:intergenic |
| ATTATATGTGTCGCCAAACC+AGG | 0.539453 | 2.4:+17540920 | MS.gene059880:CDS |
| AAATTTAACAGACGGACCGT+TGG | 0.547683 | 2.4:-17538937 | None:intergenic |
| AATGAGGCAGAAGCGATACC+AGG | 0.551260 | 2.4:-17538303 | None:intergenic |
| CATCCCAAAAGGGTCCTCAC+TGG | 0.551306 | 2.4:-17537660 | None:intergenic |
| GAAGTCGAGGTTAAGGAGAA+TGG | 0.558717 | 2.4:+17537708 | MS.gene059880:CDS |
| GAAGAGAAAACGAAGCGAAA+AGG | 0.560289 | 2.4:+17537590 | MS.gene059880:CDS |
| AAAAGATCTTTATCTCTGGA+TGG | 0.569362 | 2.4:+17538905 | MS.gene059880:CDS |
| TTGATGAAAATGTCAAAAGA+GGG | 0.581244 | 2.4:-17539209 | None:intergenic |
| AATCCAATTAAAATATTCGG+TGG | 0.581638 | 2.4:+17540864 | MS.gene059880:CDS |
| GCAAACTCATCAGGCTCCAG+AGG | 0.583650 | 2.4:-17541139 | None:intergenic |
| AAGGAGGAAAATGCATGAGA+TGG | 0.589573 | 2.4:+17541111 | MS.gene059880:CDS |
| GTTGAATCGAAAGAAACTAA+AGG | 0.591875 | 2.4:+17538343 | MS.gene059880:CDS |
| AACTCCGAAGGACCATAGAA+AGG | 0.592135 | 2.4:+17539769 | MS.gene059880:CDS |
| TGAAAATGTCAAAAGAGGGC+GGG | 0.598198 | 2.4:-17539205 | None:intergenic |
| TACTTGTTTAGGTTGGTCCA+CGG | 0.602021 | 2.4:+17540832 | MS.gene059880:intron |
| CTGATGAGTTTGCAGATATG+TGG | 0.604261 | 2.4:+17541149 | MS.gene059880:CDS |
| AAGCGAAAAGGCTGAAGCTG+TGG | 0.609947 | 2.4:+17537602 | MS.gene059880:CDS |
| AGAAGGTCAAAGCAAAGACA+AGG | 0.616949 | 2.4:+17541092 | MS.gene059880:CDS |
| AATTTGTCTGACTCATTGTG+AGG | 0.622655 | 2.4:-17540699 | None:intergenic |
| TGAAAATGAGAATGAAGTCG+AGG | 0.626692 | 2.4:+17537695 | MS.gene059880:CDS |
| ATTGGATTCAAGCAGAACCG+TGG | 0.628585 | 2.4:-17540849 | None:intergenic |
| ATGAAAATGTCAAAAGAGGG+CGG | 0.629935 | 2.4:-17539206 | None:intergenic |
| AGGTCAAAGCAAAGACAAGG+AGG | 0.640567 | 2.4:+17541095 | MS.gene059880:CDS |
| TGGATGGCAAAATGCCCCAA+CGG | 0.651109 | 2.4:+17538921 | MS.gene059880:CDS |
| ATGTGAATTTCAGTGCAGGA+AGG | 0.660599 | 2.4:+17538881 | MS.gene059880:intron |
| CCAGGTTCAACATCAAATGT+CGG | 0.661077 | 2.4:-17538285 | None:intergenic |
| ATTTAACAGACGGACCGTTG+GGG | 0.668767 | 2.4:-17538935 | None:intergenic |
| CTCAACAAGCTCGTTCAAGG+TGG | 0.686995 | 2.4:-17538368 | None:intergenic |
| TTGCTCCAGAGAGACCAGTG+AGG | 0.749614 | 2.4:+17537646 | MS.gene059880:CDS |
| GAGTCAGACAAATTACCCCG+AGG | 0.769107 | 2.4:+17540708 | MS.gene059880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAATTAATGTCAAA+TGG | + | chr2.4:17537963-17537982 | MS.gene059880:intron | 10.0% |
| !! | AAATACAGCAAAATATATTT+GGG | - | chr2.4:17537815-17537834 | None:intergenic | 15.0% |
| !! | AATAATATATAATCATAGCA+AGG | - | chr2.4:17539026-17539045 | None:intergenic | 15.0% |
| !! | ATTGATCATAAACTTATTAT+AGG | + | chr2.4:17538260-17538279 | MS.gene059880:intron | 15.0% |
| !! | TTGAATCCAATTAAAATATT+CGG | + | chr2.4:17540861-17540880 | MS.gene059880:CDS | 15.0% |
| !!! | CTACACTTTAAAATTTAAAA+TGG | - | chr2.4:17538670-17538689 | None:intergenic | 15.0% |
| !!! | GATTATTTTTTATGACATTA+AGG | + | chr2.4:17538435-17538454 | MS.gene059880:intron | 15.0% |
| !!! | TAATGCTTTAAAAATTTGAA+AGG | - | chr2.4:17540132-17540151 | None:intergenic | 15.0% |
| !!! | TTATTTTCAGAAGAAAATTA+CGG | - | chr2.4:17540983-17541002 | None:intergenic | 15.0% |
| !!! | TTGGTTATTTTTTAATGTAT+AGG | + | chr2.4:17540528-17540547 | MS.gene059880:intron | 15.0% |
| !! | AAAAGAGAAATTAGTAAGAT+GGG | - | chr2.4:17539119-17539138 | None:intergenic | 20.0% |
| !! | AGTTCTATAAATGTTATGTT+TGG | + | chr2.4:17539515-17539534 | MS.gene059880:intron | 20.0% |
| !! | CAAATACAGCAAAATATATT+TGG | - | chr2.4:17537816-17537835 | None:intergenic | 20.0% |
| !! | CAGTTTACTTAATTTAAATC+TGG | + | chr2.4:17538744-17538763 | MS.gene059880:intron | 20.0% |
| !! | CTAACTAAAAATTTAACAGA+CGG | - | chr2.4:17538948-17538967 | None:intergenic | 20.0% |
| !! | GCTATGATTATATATTATTC+TGG | + | chr2.4:17539027-17539046 | MS.gene059880:intron | 20.0% |
| !! | TAAAAGAGAAATTAGTAAGA+TGG | - | chr2.4:17539120-17539139 | None:intergenic | 20.0% |
| !! | TGTCATAAAAAATAATCGAA+AGG | - | chr2.4:17538432-17538451 | None:intergenic | 20.0% |
| !! | TTTACTTAATTTAAATCTGG+CGG | + | chr2.4:17538747-17538766 | MS.gene059880:intron | 20.0% |
| !!! | AAAATATATTTGGGTTTTGT+GGG | - | chr2.4:17537806-17537825 | None:intergenic | 20.0% |
| !!! | AAGTAATGATTGTTTTACTA+TGG | + | chr2.4:17540302-17540321 | MS.gene059880:intron | 20.0% |
| !!! | AATTTTTAAAGCATTATCCT+TGG | + | chr2.4:17540136-17540155 | MS.gene059880:intron | 20.0% |
| !!! | ACATCAGTTAAATGAATTTT+AGG | - | chr2.4:17540804-17540823 | None:intergenic | 20.0% |
| !!! | ATTGATAGTATATAAGGTTT+TGG | - | chr2.4:17540278-17540297 | None:intergenic | 20.0% |
| !!! | ATTTTTAAAGCATTATCCTT+GGG | + | chr2.4:17540137-17540156 | MS.gene059880:intron | 20.0% |
| !!! | TTCTGAAAATAACTTCATAT+TGG | + | chr2.4:17540991-17541010 | MS.gene059880:intron | 20.0% |
| !!! | TTCTTCATGTTTATTTTTTG+AGG | + | chr2.4:17538402-17538421 | MS.gene059880:CDS | 20.0% |
| !!! | TTCTTCATTGATAGTATATA+AGG | - | chr2.4:17540284-17540303 | None:intergenic | 20.0% |
| ! | AACTCAAACTTGAGATTAAA+TGG | - | chr2.4:17538788-17538807 | None:intergenic | 25.0% |
| ! | AATACATAGAAAAGCCAATT+TGG | - | chr2.4:17538720-17538739 | None:intergenic | 25.0% |
| ! | AATCCAATTAAAATATTCGG+TGG | + | chr2.4:17540864-17540883 | MS.gene059880:CDS | 25.0% |
| ! | AATTTAAATTGAGCAGAATG+TGG | + | chr2.4:17539555-17539574 | MS.gene059880:intron | 25.0% |
| ! | ATAACCAAAATTAAGTTCAC+TGG | - | chr2.4:17540516-17540535 | None:intergenic | 25.0% |
| ! | ATACATAGAAAAGCCAATTT+GGG | - | chr2.4:17538719-17538738 | None:intergenic | 25.0% |
| ! | ATACTAAAGCCTATTTGTAA+AGG | - | chr2.4:17540165-17540184 | None:intergenic | 25.0% |
| ! | ATGGATTCTCATATAAAGTT+GGG | - | chr2.4:17540902-17540921 | None:intergenic | 25.0% |
| ! | ATTTAAATTGAGCAGAATGT+GGG | + | chr2.4:17539556-17539575 | MS.gene059880:intron | 25.0% |
| ! | CAAAAAGAAGAATAAAGAAC+TGG | - | chr2.4:17539063-17539082 | None:intergenic | 25.0% |
| ! | CAACAACATTTGTAACAAAA+TGG | - | chr2.4:17538556-17538575 | None:intergenic | 25.0% |
| ! | CTGAGTTATGTATTTGAATA+GGG | + | chr2.4:17539628-17539647 | MS.gene059880:intron | 25.0% |
| ! | GAAAATTCACTGTTTGTTTA+TGG | + | chr2.4:17538516-17538535 | MS.gene059880:intron | 25.0% |
| ! | TAATAGCTTAACTAAGTTGT+TGG | - | chr2.4:17537891-17537910 | None:intergenic | 25.0% |
| ! | TATAATCATAGCAAGGAAAT+TGG | - | chr2.4:17539019-17539038 | None:intergenic | 25.0% |
| ! | TGAGTTATGTATTTGAATAG+GGG | + | chr2.4:17539629-17539648 | MS.gene059880:intron | 25.0% |
| ! | TTCACTCAAGTAAAAAACTA+TGG | - | chr2.4:17540040-17540059 | None:intergenic | 25.0% |
| ! | TTGATGAAAATGTCAAAAGA+GGG | - | chr2.4:17539212-17539231 | None:intergenic | 25.0% |
| ! | TTTGATGAAAATGTCAAAAG+AGG | - | chr2.4:17539213-17539232 | None:intergenic | 25.0% |
| !! | AAAACTTCTTCCTTTTATTG+CGG | + | chr2.4:17538215-17538234 | MS.gene059880:intron | 25.0% |
| !! | AATGGATTCTCATATAAAGT+TGG | - | chr2.4:17540903-17540922 | None:intergenic | 25.0% |
| !! | AATTCTTTTACTGCACATAA+AGG | - | chr2.4:17538156-17538175 | None:intergenic | 25.0% |
| !! | ATTCTTTTACTGCACATAAA+GGG | - | chr2.4:17538155-17538174 | None:intergenic | 25.0% |
| !! | CATTTTGTTACAAATGTTGT+TGG | + | chr2.4:17538554-17538573 | MS.gene059880:intron | 25.0% |
| !! | TAATCCAGTGAACTTAATTT+TGG | + | chr2.4:17540509-17540528 | MS.gene059880:intron | 25.0% |
| !! | TATAATTATGCCAGTTGTTT+TGG | + | chr2.4:17540010-17540029 | MS.gene059880:intron | 25.0% |
| !! | TCGTGATATCATATTTCTAT+TGG | - | chr2.4:17540228-17540247 | None:intergenic | 25.0% |
| !! | TGATAAAATGACATTGATTG+AGG | + | chr2.4:17540737-17540756 | MS.gene059880:CDS | 25.0% |
| !! | TTGATAATACGATCTTAGTT+TGG | + | chr2.4:17539339-17539358 | MS.gene059880:intron | 25.0% |
| !!! | ATTTTGAAAAAGATGCATAC+TGG | + | chr2.4:17539232-17539251 | MS.gene059880:CDS | 25.0% |
| !!! | CAAAATATATTTGGGTTTTG+TGG | - | chr2.4:17537807-17537826 | None:intergenic | 25.0% |
| !!! | CAATCAATGTCATTTTATCA+AGG | - | chr2.4:17540737-17540756 | None:intergenic | 25.0% |
| !!! | GTTAAATTTTTAGTTAGTGC+CGG | + | chr2.4:17538951-17538970 | MS.gene059880:CDS | 25.0% |
| !!! | GTTTAAACTTTAAAATCCGT+TGG | + | chr2.4:17539934-17539953 | MS.gene059880:intron | 25.0% |
| !!! | TGTTTTGGATTCAAAAGTTA+AGG | + | chr2.4:17539311-17539330 | MS.gene059880:intron | 25.0% |
| !!! | TGTTTTTAACCTCTTTATGT+TGG | + | chr2.4:17541017-17541036 | MS.gene059880:intron | 25.0% |
| !!! | TTCACAATTTTCTCTAGTTT+TGG | + | chr2.4:17539596-17539615 | MS.gene059880:intron | 25.0% |
| !!! | TTGTTTATTTTGGCTATGTT+TGG | + | chr2.4:17537865-17537884 | MS.gene059880:intron | 25.0% |
| AAAAGATCTTTATCTCTGGA+TGG | + | chr2.4:17538905-17538924 | MS.gene059880:CDS | 30.0% | |
| AAACACTTGTAAGACTGTTT+GGG | - | chr2.4:17538093-17538112 | None:intergenic | 30.0% | |
| AACTAGAGAAAATTGTGAAC+AGG | - | chr2.4:17539595-17539614 | None:intergenic | 30.0% | |
| AAGAAGCTGAAAACAGTTTA+TGG | + | chr2.4:17538038-17538057 | MS.gene059880:intron | 30.0% | |
| AATCTCTTTCCTTTATGTGA+TGG | + | chr2.4:17538595-17538614 | MS.gene059880:intron | 30.0% | |
| ACTGATTATTTGTAAACCAC+TGG | + | chr2.4:17540343-17540362 | MS.gene059880:intron | 30.0% | |
| ACTTGCTTAAGATTAAGAAC+AGG | - | chr2.4:17538811-17538830 | None:intergenic | 30.0% | |
| AGTTAAGCTATTATGCTGTA+AGG | + | chr2.4:17537898-17537917 | MS.gene059880:intron | 30.0% | |
| ATCCATTATCCATCACATAA+AGG | - | chr2.4:17538607-17538626 | None:intergenic | 30.0% | |
| CAAACAGATGAGAATATTAC+CGG | - | chr2.4:17538973-17538992 | None:intergenic | 30.0% | |
| CAATTGAGAAAACAAAAACG+TGG | - | chr2.4:17539811-17539830 | None:intergenic | 30.0% | |
| CCTATTCAAATACATAACTC+AGG | - | chr2.4:17539630-17539649 | None:intergenic | 30.0% | |
| CCTGAGTTATGTATTTGAAT+AGG | + | chr2.4:17539627-17539646 | MS.gene059880:intron | 30.0% | |
| GTTAAGCTATTATGCTGTAA+GGG | + | chr2.4:17537899-17537918 | MS.gene059880:intron | 30.0% | |
| GTTGAATCGAAAGAAACTAA+AGG | + | chr2.4:17538343-17538362 | MS.gene059880:CDS | 30.0% | |
| TAAACACTTGTAAGACTGTT+TGG | - | chr2.4:17538094-17538113 | None:intergenic | 30.0% | |
| TACATAATAATAGCATCCAG+TGG | - | chr2.4:17540362-17540381 | None:intergenic | 30.0% | |
| TATAGAACTTCTCAAGTCAA+CGG | - | chr2.4:17539504-17539523 | None:intergenic | 30.0% | |
| TCATTGCAAAAAGGATAACA+AGG | + | chr2.4:17538321-17538340 | MS.gene059880:CDS | 30.0% | |
| TCTAGTCTATTTGTGACATT+TGG | + | chr2.4:17538830-17538849 | MS.gene059880:intron | 30.0% | |
| TGTTGAAAACAACAAACCAA+CGG | - | chr2.4:17539953-17539972 | None:intergenic | 30.0% | |
| ! | AAACTTCTTCCTTTTATTGC+GGG | + | chr2.4:17538216-17538235 | MS.gene059880:intron | 30.0% |
| ! | ATAATACGATCTTAGTTTGG+TGG | + | chr2.4:17539342-17539361 | MS.gene059880:intron | 30.0% |
| ! | TTGTTATCCTTTTTGCAATG+AGG | - | chr2.4:17538322-17538341 | None:intergenic | 30.0% |
| !! | ATTGTTTTACTATGGTTGCA+TGG | + | chr2.4:17540310-17540329 | MS.gene059880:intron | 30.0% |
| !! | CAATTGTTGATGACCATATA+TGG | + | chr2.4:17539825-17539844 | MS.gene059880:CDS | 30.0% |
| !! | CTCATCTGTTTGTTATCTTA+AGG | + | chr2.4:17538981-17539000 | MS.gene059880:intron | 30.0% |
| !! | GAGTTCGGATTTGTTTATTT+TGG | + | chr2.4:17537855-17537874 | MS.gene059880:intron | 30.0% |
| !! | TTCCTTTATGTGATGGATAA+TGG | + | chr2.4:17538602-17538621 | MS.gene059880:intron | 30.0% |
| !!! | GGGTTATTGGTTTTTGATTA+TGG | + | chr2.4:17538236-17538255 | MS.gene059880:intron | 30.0% |
| AAAAATAAGCGCAAGCATCT+TGG | + | chr2.4:17539986-17540005 | MS.gene059880:intron | 35.0% | |
| AAACTACCTTGAAGAGCTTA+TGG | + | chr2.4:17538015-17538034 | MS.gene059880:intron | 35.0% | |
| AACATTGCCGATGGATAAAT+TGG | + | chr2.4:17540097-17540116 | MS.gene059880:intron | 35.0% | |
| AACCAATAACCCGCAATAAA+AGG | - | chr2.4:17538228-17538247 | None:intergenic | 35.0% | |
| AATTTGTCTGACTCATTGTG+AGG | - | chr2.4:17540702-17540721 | None:intergenic | 35.0% | |
| ACATTGCCGATGGATAAATT+GGG | + | chr2.4:17540098-17540117 | MS.gene059880:intron | 35.0% | |
| AGAAAACAAAAACGTGGTCA+TGG | - | chr2.4:17539805-17539824 | None:intergenic | 35.0% | |
| AGAACATAATGGTCATTACC+TGG | - | chr2.4:17540941-17540960 | None:intergenic | 35.0% | |
| AGACACAAACCTGGTAATTT+CGG | - | chr2.4:17539853-17539872 | None:intergenic | 35.0% | |
| AGGCAAAAGATCTTTATCTC+TGG | + | chr2.4:17538901-17538920 | MS.gene059880:CDS | 35.0% | |
| ATAATGGTCATTACCTGGTT+TGG | - | chr2.4:17540936-17540955 | None:intergenic | 35.0% | |
| ATAGAAAAGCCAATTTGGGA+GGG | - | chr2.4:17538715-17538734 | None:intergenic | 35.0% | |
| ATGAAAATGTCAAAAGAGGG+CGG | - | chr2.4:17539209-17539228 | None:intergenic | 35.0% | |
| ATTGATTGAGGTCTGCAAAT+TGG | + | chr2.4:17540749-17540768 | MS.gene059880:intron | 35.0% | |
| ATTGTCTACACTTCTAGTCT+AGG | + | chr2.4:17540387-17540406 | MS.gene059880:intron | 35.0% | |
| CACAAACCCAATTTATCCAT+CGG | - | chr2.4:17540107-17540126 | None:intergenic | 35.0% | |
| CATTCGCAAAAAAATGCAAG+TGG | - | chr2.4:17540574-17540593 | None:intergenic | 35.0% | |
| CTACAACAACCAACATAAAG+AGG | - | chr2.4:17541029-17541048 | None:intergenic | 35.0% | |
| CTGAAATTCACATACACAGA+AGG | - | chr2.4:17538874-17538893 | None:intergenic | 35.0% | |
| GGTAATTTCGGAACCATATA+TGG | - | chr2.4:17539841-17539860 | None:intergenic | 35.0% | |
| TATATGGTTCCGAAATTACC+AGG | + | chr2.4:17539841-17539860 | MS.gene059880:CDS | 35.0% | |
| TCTGCATGAGAATAAAAACG+TGG | - | chr2.4:17540671-17540690 | None:intergenic | 35.0% | |
| TGAAAATGAGAATGAAGTCG+AGG | + | chr2.4:17537695-17537714 | MS.gene059880:CDS | 35.0% | |
| TGCAAACTACTTGTTTAGGT+TGG | + | chr2.4:17540825-17540844 | MS.gene059880:intron | 35.0% | |
| TGCATACTGGAAACTGTTAA+AGG | + | chr2.4:17539245-17539264 | MS.gene059880:CDS | 35.0% | |
| TGTGTGCAAACTACTTGTTT+AGG | + | chr2.4:17540821-17540840 | MS.gene059880:intron | 35.0% | |
| TTCTCTTTGTTCCTGAATAC+AGG | - | chr2.4:17537741-17537760 | None:intergenic | 35.0% | |
| ! | AGAAATTAGTAAGATGGGCT+CGG | - | chr2.4:17539114-17539133 | None:intergenic | 35.0% |
| ! | CAGGAACAAAGAGAAAGTTT+TGG | + | chr2.4:17537746-17537765 | MS.gene059880:CDS | 35.0% |
| ! | GTATGATTGATGGATCTACA+GGG | + | chr2.4:17540470-17540489 | MS.gene059880:intron | 35.0% |
| ! | TACTCTTCTATGCACTGTTT+TGG | + | chr2.4:17539296-17539315 | MS.gene059880:intron | 35.0% |
| ! | TCATTTTATCAAGGCTTCCT+CGG | - | chr2.4:17540728-17540747 | None:intergenic | 35.0% |
| !! | AAAATATTCGGTGGCAGTTT+TGG | + | chr2.4:17540873-17540892 | MS.gene059880:CDS | 35.0% |
| !! | TTCCTTTTATTGCGGGTTAT+TGG | + | chr2.4:17538223-17538242 | MS.gene059880:intron | 35.0% |
| !!! | AAGTTTTGGTTACTTGCTCT+AGG | + | chr2.4:17537760-17537779 | MS.gene059880:CDS | 35.0% |
| !!! | CTGCCACCGAATATTTTAAT+TGG | - | chr2.4:17540870-17540889 | None:intergenic | 35.0% |
| !!! | CTTGCATTTTTTTGCGAATG+TGG | + | chr2.4:17540574-17540593 | MS.gene059880:intron | 35.0% |
| !!! | GTCTGTGTTTGTTTTGAGTT+CGG | + | chr2.4:17537840-17537859 | MS.gene059880:intron | 35.0% |
| AAATTTAACAGACGGACCGT+TGG | - | chr2.4:17538940-17538959 | None:intergenic | 40.0% | |
| AAGGAGGAAAATGCATGAGA+TGG | + | chr2.4:17541111-17541130 | MS.gene059880:CDS | 40.0% | |
| AATTTAACAGACGGACCGTT+GGG | - | chr2.4:17538939-17538958 | None:intergenic | 40.0% | |
| ACAAAAACGTGGTCATGGAA+AGG | - | chr2.4:17539800-17539819 | None:intergenic | 40.0% | |
| AGAAGGTCAAAGCAAAGACA+AGG | + | chr2.4:17541092-17541111 | MS.gene059880:CDS | 40.0% | |
| AGTGTGCACAGAGAACATAA+TGG | - | chr2.4:17540952-17540971 | None:intergenic | 40.0% | |
| ATGGAGGAATTGAAGCTTAC+TGG | + | chr2.4:17539165-17539184 | MS.gene059880:CDS | 40.0% | |
| ATGTGAATTTCAGTGCAGGA+AGG | + | chr2.4:17538881-17538900 | MS.gene059880:intron | 40.0% | |
| ATTATATGTGTCGCCAAACC+AGG | + | chr2.4:17540920-17540939 | MS.gene059880:CDS | 40.0% | |
| CAATTTGGGAGGGAAAACAA+AGG | - | chr2.4:17538705-17538724 | None:intergenic | 40.0% | |
| CACATATCTGCAAACTCATC+AGG | - | chr2.4:17541151-17541170 | None:intergenic | 40.0% | |
| CATAGAAAAGCCAATTTGGG+AGG | - | chr2.4:17538716-17538735 | None:intergenic | 40.0% | |
| CCAGGTTCAACATCAAATGT+CGG | - | chr2.4:17538288-17538307 | None:intergenic | 40.0% | |
| CCTATTTGTAAAGGAACCCA+AGG | - | chr2.4:17540156-17540175 | None:intergenic | 40.0% | |
| CCTTCGGAGTTTCAAAAATC+TGG | - | chr2.4:17539760-17539779 | None:intergenic | 40.0% | |
| CCTTGGGTTCCTTTACAAAT+AGG | + | chr2.4:17540153-17540172 | MS.gene059880:intron | 40.0% | |
| CGCTTTGCAGAAGAAGAAAA+AGG | + | chr2.4:17541054-17541073 | MS.gene059880:CDS | 40.0% | |
| CTATGGCTAACCAAAACAAC+TGG | - | chr2.4:17540023-17540042 | None:intergenic | 40.0% | |
| CTGATGAGTTTGCAGATATG+TGG | + | chr2.4:17541149-17541168 | MS.gene059880:CDS | 40.0% | |
| CTTACTGGGAATCACCTAAA+AGG | + | chr2.4:17539180-17539199 | MS.gene059880:CDS | 40.0% | |
| CTTATCCTTCCATCCCAAAA+GGG | - | chr2.4:17537673-17537692 | None:intergenic | 40.0% | |
| CTTCTTCCATAAGCTCTTCA+AGG | - | chr2.4:17538024-17538043 | None:intergenic | 40.0% | |
| GAAGAGAAAACGAAGCGAAA+AGG | + | chr2.4:17537590-17537609 | MS.gene059880:CDS | 40.0% | |
| GAGATGCTGTTACAGGTATT+TGG | + | chr2.4:17539267-17539286 | MS.gene059880:intron | 40.0% | |
| GTAGATCCATCAATCATACG+TGG | - | chr2.4:17540469-17540488 | None:intergenic | 40.0% | |
| GTGTATGTGAATTTCAGTGC+AGG | + | chr2.4:17538877-17538896 | MS.gene059880:intron | 40.0% | |
| GTTAAAGGAGATGCTGTTAC+AGG | + | chr2.4:17539260-17539279 | MS.gene059880:CDS | 40.0% | |
| TCTTATCCTTCCATCCCAAA+AGG | - | chr2.4:17537674-17537693 | None:intergenic | 40.0% | |
| TGAAAATGTCAAAAGAGGGC+GGG | - | chr2.4:17539208-17539227 | None:intergenic | 40.0% | |
| TGAGAATGAAGTCGAGGTTA+AGG | + | chr2.4:17537701-17537720 | MS.gene059880:CDS | 40.0% | |
| TGCAAATTCAGACACAAACC+TGG | - | chr2.4:17539862-17539881 | None:intergenic | 40.0% | |
| TGGAGGAATTGAAGCTTACT+GGG | + | chr2.4:17539166-17539185 | MS.gene059880:CDS | 40.0% | |
| TTCTTTGCTAACATTGCCGA+TGG | + | chr2.4:17540088-17540107 | MS.gene059880:intron | 40.0% | |
| TTGCAGAAGAAGAAAAAGGC+TGG | + | chr2.4:17541058-17541077 | MS.gene059880:CDS | 40.0% | |
| ! | ATTTTATCAAGGCTTCCTCG+GGG | - | chr2.4:17540726-17540745 | None:intergenic | 40.0% |
| ! | CATTTTATCAAGGCTTCCTC+GGG | - | chr2.4:17540727-17540746 | None:intergenic | 40.0% |
| ! | CGTATGATTGATGGATCTAC+AGG | + | chr2.4:17540469-17540488 | MS.gene059880:intron | 40.0% |
| ! | GCTCTAGGCGTATTGTTTAT+AGG | + | chr2.4:17537775-17537794 | MS.gene059880:CDS | 40.0% |
| ! | GGAGCAACATCTTCCTTTTT+GGG | - | chr2.4:17537633-17537652 | None:intergenic | 40.0% |
| ! | TGGAGCAACATCTTCCTTTT+TGG | - | chr2.4:17537634-17537653 | None:intergenic | 40.0% |
| ! | TGGTTTGGCGACACATATAA+TGG | - | chr2.4:17540921-17540940 | None:intergenic | 40.0% |
| ! | TTAGCCTTTCTATGGTCCTT+CGG | - | chr2.4:17539776-17539795 | None:intergenic | 40.0% |
| ! | TTTATGTGCGCACTTTTCTG+AGG | + | chr2.4:17539415-17539434 | MS.gene059880:intron | 40.0% |
| !! | TACTTGTTTAGGTTGGTCCA+CGG | + | chr2.4:17540832-17540851 | MS.gene059880:intron | 40.0% |
| !!! | CCAGATTTTTGAAACTCCGA+AGG | + | chr2.4:17539757-17539776 | MS.gene059880:intron | 40.0% |
| !!! | CTTAGTTTGGTGGTGCTTTT+GGG | + | chr2.4:17539352-17539371 | MS.gene059880:intron | 40.0% |
| !!! | CTTTGTTTTCCCTCCCAAAT+TGG | + | chr2.4:17538703-17538722 | MS.gene059880:intron | 40.0% |
| !!! | GCGCACATGCATTTTTTTCT+TGG | + | chr2.4:17539670-17539689 | MS.gene059880:intron | 40.0% |
| !!! | TCTTAGTTTGGTGGTGCTTT+TGG | + | chr2.4:17539351-17539370 | MS.gene059880:intron | 40.0% |
| !!! | TTAGTTTGGTGGTGCTTTTG+GGG | + | chr2.4:17539353-17539372 | MS.gene059880:intron | 40.0% |
| AACTCCGAAGGACCATAGAA+AGG | + | chr2.4:17539769-17539788 | MS.gene059880:CDS | 45.0% | |
| ACGCTACCACGTATGATTGA+TGG | + | chr2.4:17540460-17540479 | MS.gene059880:intron | 45.0% | |
| AGGTCAAAGCAAAGACAAGG+AGG | + | chr2.4:17541095-17541114 | MS.gene059880:CDS | 45.0% | |
| ATGGTGCTTCACCTGTATTC+AGG | + | chr2.4:17537727-17537746 | MS.gene059880:CDS | 45.0% | |
| ATTGGATTCAAGCAGAACCG+TGG | - | chr2.4:17540852-17540871 | None:intergenic | 45.0% | |
| ATTTAACAGACGGACCGTTG+GGG | - | chr2.4:17538938-17538957 | None:intergenic | 45.0% | |
| CCGACATTTGATGTTGAACC+TGG | + | chr2.4:17538285-17538304 | MS.gene059880:CDS | 45.0% | |
| GAAGTCGAGGTTAAGGAGAA+TGG | + | chr2.4:17537708-17537727 | MS.gene059880:CDS | 45.0% | |
| GCAAGACACAAGAGTCAGAT+GGG | - | chr2.4:17538632-17538651 | None:intergenic | 45.0% | |
| GCTTCTGCCTCATTGCAAAA+AGG | + | chr2.4:17538312-17538331 | MS.gene059880:CDS | 45.0% | |
| GGCTGGAACATTTGCAAAGA+AGG | + | chr2.4:17541075-17541094 | MS.gene059880:CDS | 45.0% | |
| TGCAAGACACAAGAGTCAGA+TGG | - | chr2.4:17538633-17538652 | None:intergenic | 45.0% | |
| TGTGCACTGAAAAGCAGTGA+AGG | - | chr2.4:17539143-17539162 | None:intergenic | 45.0% | |
| ! | AATCATACGTGGTAGCGTCA+TGG | - | chr2.4:17540458-17540477 | None:intergenic | 45.0% |
| ! | CTGCACATAAAGGGCTTGTT+TGG | - | chr2.4:17538146-17538165 | None:intergenic | 45.0% |
| ! | CTTTTCAGTGCACACAATGG+AGG | + | chr2.4:17539149-17539168 | MS.gene059880:intron | 45.0% |
| ! | GGAAAGGCTTAGCCTTTCTA+TGG | - | chr2.4:17539784-17539803 | None:intergenic | 45.0% |
| !! | ATATTCGGTGGCAGTTTTGG+AGG | + | chr2.4:17540876-17540895 | MS.gene059880:CDS | 45.0% |
| !! | CTGCTTTTCAGTGCACACAA+TGG | + | chr2.4:17539146-17539165 | MS.gene059880:intron | 45.0% |
| AAGCGAAAAGGCTGAAGCTG+TGG | + | chr2.4:17537602-17537621 | MS.gene059880:CDS | 50.0% | |
| AATGAGGCAGAAGCGATACC+AGG | - | chr2.4:17538306-17538325 | None:intergenic | 50.0% | |
| CTCAACAAGCTCGTTCAAGG+TGG | - | chr2.4:17538371-17538390 | None:intergenic | 50.0% | |
| GAGCTCAACAAGCTCGTTCA+AGG | - | chr2.4:17538374-17538393 | None:intergenic | 50.0% | |
| GAGTCAGACAAATTACCCCG+AGG | + | chr2.4:17540708-17540727 | MS.gene059880:CDS | 50.0% | |
| TGGATGGCAAAATGCCCCAA+CGG | + | chr2.4:17538921-17538940 | MS.gene059880:CDS | 50.0% | |
| ! | AGACCAGTGAGGACCCTTTT+GGG | + | chr2.4:17537657-17537676 | MS.gene059880:CDS | 50.0% |
| AGCTGTGGCTGTGCCCAAAA+AGG | + | chr2.4:17537617-17537636 | MS.gene059880:CDS | 55.0% | |
| CATCCCAAAAGGGTCCTCAC+TGG | - | chr2.4:17537663-17537682 | None:intergenic | 55.0% | |
| CTCATCAGGCTCCAGAGGAT+TGG | - | chr2.4:17541137-17541156 | None:intergenic | 55.0% | |
| GCAAACTCATCAGGCTCCAG+AGG | - | chr2.4:17541142-17541161 | None:intergenic | 55.0% | |
| GCATGAGATGGCCAATCCTC+TGG | + | chr2.4:17541123-17541142 | MS.gene059880:CDS | 55.0% | |
| TTGCTCCAGAGAGACCAGTG+AGG | + | chr2.4:17537646-17537665 | MS.gene059880:CDS | 55.0% | |
| ! | AAAGAGGGCGGGAGCCTTTT+AGG | - | chr2.4:17539197-17539216 | None:intergenic | 55.0% |
| ! | GAGACCAGTGAGGACCCTTT+TGG | + | chr2.4:17537656-17537675 | MS.gene059880:CDS | 55.0% |
| !! | CAGTGAGGACCCTTTTGGGA+TGG | + | chr2.4:17537661-17537680 | MS.gene059880:CDS | 55.0% |
| !!! | GAGGACCCTTTTGGGATGGA+AGG | + | chr2.4:17537665-17537684 | MS.gene059880:CDS | 55.0% |
| ! | AGGGTCCTCACTGGTCTCTC+TGG | - | chr2.4:17537654-17537673 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 17537585 | 17541180 | 17537585 | ID=MS.gene059880 |
| chr2.4 | mRNA | 17537585 | 17541180 | 17537585 | ID=MS.gene059880.t1;Parent=MS.gene059880 |
| chr2.4 | exon | 17537585 | 17537796 | 17537585 | ID=MS.gene059880.t1.exon1;Parent=MS.gene059880.t1 |
| chr2.4 | CDS | 17537585 | 17537796 | 17537585 | ID=cds.MS.gene059880.t1;Parent=MS.gene059880.t1 |
| chr2.4 | exon | 17538282 | 17538423 | 17538282 | ID=MS.gene059880.t1.exon2;Parent=MS.gene059880.t1 |
| chr2.4 | CDS | 17538282 | 17538423 | 17538282 | ID=cds.MS.gene059880.t1;Parent=MS.gene059880.t1 |
| chr2.4 | exon | 17538894 | 17538972 | 17538894 | ID=MS.gene059880.t1.exon3;Parent=MS.gene059880.t1 |
| chr2.4 | CDS | 17538894 | 17538972 | 17538894 | ID=cds.MS.gene059880.t1;Parent=MS.gene059880.t1 |
| chr2.4 | exon | 17539157 | 17539281 | 17539157 | ID=MS.gene059880.t1.exon4;Parent=MS.gene059880.t1 |
| chr2.4 | CDS | 17539157 | 17539281 | 17539157 | ID=cds.MS.gene059880.t1;Parent=MS.gene059880.t1 |
| chr2.4 | exon | 17539761 | 17539862 | 17539761 | ID=MS.gene059880.t1.exon5;Parent=MS.gene059880.t1 |
| chr2.4 | CDS | 17539761 | 17539862 | 17539761 | ID=cds.MS.gene059880.t1;Parent=MS.gene059880.t1 |
| chr2.4 | exon | 17540690 | 17540758 | 17540690 | ID=MS.gene059880.t1.exon6;Parent=MS.gene059880.t1 |
| chr2.4 | CDS | 17540690 | 17540758 | 17540690 | ID=cds.MS.gene059880.t1;Parent=MS.gene059880.t1 |
| chr2.4 | exon | 17540843 | 17540941 | 17540843 | ID=MS.gene059880.t1.exon7;Parent=MS.gene059880.t1 |
| chr2.4 | CDS | 17540843 | 17540941 | 17540843 | ID=cds.MS.gene059880.t1;Parent=MS.gene059880.t1 |
| chr2.4 | exon | 17541049 | 17541180 | 17541049 | ID=MS.gene059880.t1.exon8;Parent=MS.gene059880.t1 |
| chr2.4 | CDS | 17541049 | 17541180 | 17541049 | ID=cds.MS.gene059880.t1;Parent=MS.gene059880.t1 |
| Gene Sequence |
| Protein sequence |
