Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059878.t1 | XP_013465818.1 | 96.2 | 319 | 10 | 1 | 1 | 319 | 1 | 317 | 1.50E-176 | 628.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059878.t1 | Q9C928 | 77.0 | 317 | 71 | 1 | 3 | 319 | 4 | 318 | 3.0e-144 | 512.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059878.t1 | A0A072VCY8 | 96.2 | 319 | 10 | 1 | 1 | 319 | 1 | 317 | 1.1e-176 | 628.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057643 | MS.gene059878 | 0.815314 | 9.85E-52 | -1.69E-46 |
| MS.gene058994 | MS.gene059878 | 0.824799 | 6.63E-54 | -1.69E-46 |
| MS.gene059878 | MS.gene059880 | 0.99478 | 3.90E-210 | -1.69E-46 |
| MS.gene059878 | MS.gene066811 | 0.802872 | 4.56E-49 | -1.69E-46 |
| MS.gene059878 | MS.gene27003 | 0.816467 | 5.45E-52 | -1.69E-46 |
| MS.gene059878 | MS.gene27265 | 0.834051 | 3.75E-56 | -1.69E-46 |
| MS.gene059878 | MS.gene50756 | 0.825633 | 4.21E-54 | -1.69E-46 |
| MS.gene059878 | MS.gene90360 | 0.974621 | 1.77E-138 | -1.69E-46 |
| MS.gene059878 | MS.gene90945 | 0.802571 | 5.27E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059878.t1 | MTR_1g012990 | 98.119 | 319 | 4 | 1 | 1 | 319 | 1 | 317 | 0.0 | 646 |
| MS.gene059878.t1 | MTR_7g069430 | 97.179 | 319 | 5 | 1 | 1 | 319 | 1 | 315 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059878.t1 | AT3G15460 | 79.062 | 320 | 60 | 3 | 1 | 319 | 1 | 314 | 0.0 | 523 |
| MS.gene059878.t1 | AT1G52930 | 78.125 | 320 | 67 | 2 | 1 | 319 | 1 | 318 | 0.0 | 504 |
Find 69 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTAGGCGTATTGTTTAT+AGG | 0.224171 | 2.4:+17491503 | MS.gene059878:CDS |
| CAATTGTTGATGACCATATA+TGG | 0.275985 | 2.4:+17493553 | MS.gene059878:CDS |
| AAAATATTCGGTGGCAGTTT+TGG | 0.276214 | 2.4:+17494601 | MS.gene059878:CDS |
| CGCTTTGCAGAAGAAGAAAA+AGG | 0.301141 | 2.4:+17494782 | MS.gene059878:CDS |
| ATGGAGGAATTGAAGCTTAC+TGG | 0.304877 | 2.4:+17492893 | MS.gene059878:CDS |
| TGGTTTGGCGACACATATAA+TGG | 0.307289 | 2.4:-17494646 | None:intergenic |
| GAGACCAGTGAGGACCCTTT+TGG | 0.316595 | 2.4:+17491384 | MS.gene059878:CDS |
| GGTAATTTCGGAACCATATA+TGG | 0.326418 | 2.4:-17493566 | None:intergenic |
| TGCATACTGGAAACTGTTAA+AGG | 0.335855 | 2.4:+17492973 | MS.gene059878:CDS |
| AGACACAAACCTGGTAATTT+CGG | 0.336053 | 2.4:-17493578 | None:intergenic |
| TTGAATCCAATTAAAATATT+CGG | 0.338246 | 2.4:+17494589 | MS.gene059878:CDS |
| TGAGAATGAAGTCGAGGTTA+AGG | 0.351881 | 2.4:+17491429 | MS.gene059878:CDS |
| GTTAAAGGAGATGCTGTTAC+AGG | 0.353959 | 2.4:+17492988 | MS.gene059878:CDS |
| TTCTCTTTGTTCCTGAATAC+AGG | 0.355373 | 2.4:-17491466 | None:intergenic |
| ATGGTGCTTCACCTGTATTC+AGG | 0.357859 | 2.4:+17491455 | MS.gene059878:CDS |
| GCTTCTGCCTCATTGCAAAA+AGG | 0.366733 | 2.4:+17492040 | MS.gene059878:CDS |
| CTTACTGGGAATCACCTAAA+AGG | 0.369692 | 2.4:+17492908 | MS.gene059878:CDS |
| AGGGTCCTCACTGGTCTCTC+TGG | 0.383639 | 2.4:-17491379 | None:intergenic |
| GGAAAGGCTTAGCCTTTCTA+TGG | 0.386528 | 2.4:-17493509 | None:intergenic |
| ATAATGGTCATTACCTGGTT+TGG | 0.399636 | 2.4:-17494661 | None:intergenic |
| CAGGAACAAAGAGAAAGTTT+TGG | 0.404050 | 2.4:+17491474 | MS.gene059878:CDS |
| AATTTAACAGACGGACCGTT+GGG | 0.405139 | 2.4:-17492664 | None:intergenic |
| AGCTGTGGCTGTGCCCAAAA+AGG | 0.410300 | 2.4:+17491345 | MS.gene059878:CDS |
| CACATATCTGCAAACTCATC+AGG | 0.414305 | 2.4:-17494876 | None:intergenic |
| TTAGCCTTTCTATGGTCCTT+CGG | 0.432964 | 2.4:-17493501 | None:intergenic |
| GAGCTCAACAAGCTCGTTCA+AGG | 0.438472 | 2.4:-17492099 | None:intergenic |
| GGCTGGAACATTTGCAAAGA+AGG | 0.442018 | 2.4:+17494803 | MS.gene059878:CDS |
| AATGGATTCTCATATAAAGT+TGG | 0.442109 | 2.4:-17494628 | None:intergenic |
| TCTTATCCTTCCATCCCAAA+AGG | 0.448553 | 2.4:-17491399 | None:intergenic |
| GCATGAGATGGCCAATCCTC+TGG | 0.463080 | 2.4:+17494851 | MS.gene059878:CDS |
| ATGGATTCTCATATAAAGTT+GGG | 0.466075 | 2.4:-17494627 | None:intergenic |
| AGGCAAAAGATCTTTATCTC+TGG | 0.470351 | 2.4:+17492629 | MS.gene059878:CDS |
| TGATAAAATGACATTGATTG+AGG | 0.479641 | 2.4:+17494465 | MS.gene059878:CDS |
| CTCATCAGGCTCCAGAGGAT+TGG | 0.500537 | 2.4:-17494862 | None:intergenic |
| CCGACATTTGATGTTGAACC+TGG | 0.503744 | 2.4:+17492013 | MS.gene059878:CDS |
| TTTGATGAAAATGTCAAAAG+AGG | 0.513130 | 2.4:-17492938 | None:intergenic |
| TATATGGTTCCGAAATTACC+AGG | 0.519157 | 2.4:+17493569 | MS.gene059878:CDS |
| TGGAGGAATTGAAGCTTACT+GGG | 0.524362 | 2.4:+17492894 | MS.gene059878:CDS |
| CTTATCCTTCCATCCCAAAA+GGG | 0.530204 | 2.4:-17491398 | None:intergenic |
| ATTATATGTGTCGCCAAACC+AGG | 0.539453 | 2.4:+17494648 | MS.gene059878:CDS |
| AAATTTAACAGACGGACCGT+TGG | 0.547683 | 2.4:-17492665 | None:intergenic |
| AATGAGGCAGAAGCGATACC+AGG | 0.551260 | 2.4:-17492031 | None:intergenic |
| CATCCCAAAAGGGTCCTCAC+TGG | 0.551306 | 2.4:-17491388 | None:intergenic |
| GAAGTCGAGGTTAAGGAGAA+TGG | 0.558717 | 2.4:+17491436 | MS.gene059878:CDS |
| GAAGAGAAAACGAAGCGAAA+AGG | 0.560289 | 2.4:+17491318 | MS.gene059878:CDS |
| AAAAGATCTTTATCTCTGGA+TGG | 0.569362 | 2.4:+17492633 | MS.gene059878:CDS |
| TTGATGAAAATGTCAAAAGA+GGG | 0.581244 | 2.4:-17492937 | None:intergenic |
| AATCCAATTAAAATATTCGG+TGG | 0.581638 | 2.4:+17494592 | MS.gene059878:CDS |
| GCAAACTCATCAGGCTCCAG+AGG | 0.583650 | 2.4:-17494867 | None:intergenic |
| AAGGAGGAAAATGCATGAGA+TGG | 0.589573 | 2.4:+17494839 | MS.gene059878:CDS |
| GTTGAATCGAAAGAAACTAA+AGG | 0.591875 | 2.4:+17492071 | MS.gene059878:CDS |
| AACTCCGAAGGACCATAGAA+AGG | 0.592135 | 2.4:+17493497 | MS.gene059878:CDS |
| TGAAAATGTCAAAAGAGGGC+GGG | 0.598198 | 2.4:-17492933 | None:intergenic |
| TACTTGTTTAGGTTGGTCCA+CGG | 0.602021 | 2.4:+17494560 | MS.gene059878:intron |
| CTGATGAGTTTGCAGATATG+TGG | 0.604261 | 2.4:+17494877 | MS.gene059878:CDS |
| AAGCGAAAAGGCTGAAGCTG+TGG | 0.609947 | 2.4:+17491330 | MS.gene059878:CDS |
| AGAAGGTCAAAGCAAAGACA+AGG | 0.616949 | 2.4:+17494820 | MS.gene059878:CDS |
| AATTTGTCTGACTCATTGTG+AGG | 0.622655 | 2.4:-17494427 | None:intergenic |
| TGAAAATGAGAATGAAGTCG+AGG | 0.626692 | 2.4:+17491423 | MS.gene059878:CDS |
| ATTGGATTCAAGCAGAACCG+TGG | 0.628585 | 2.4:-17494577 | None:intergenic |
| ATGAAAATGTCAAAAGAGGG+CGG | 0.629935 | 2.4:-17492934 | None:intergenic |
| AGGTCAAAGCAAAGACAAGG+AGG | 0.640567 | 2.4:+17494823 | MS.gene059878:CDS |
| TGGATGGCAAAATGCCCCAA+CGG | 0.651109 | 2.4:+17492649 | MS.gene059878:CDS |
| ATGTGAATTTCAGTGCAGGA+AGG | 0.660599 | 2.4:+17492609 | MS.gene059878:intron |
| CCAGGTTCAACATCAAATGT+CGG | 0.661077 | 2.4:-17492013 | None:intergenic |
| ATTTAACAGACGGACCGTTG+GGG | 0.668767 | 2.4:-17492663 | None:intergenic |
| CTCAACAAGCTCGTTCAAGG+TGG | 0.686995 | 2.4:-17492096 | None:intergenic |
| TTGCTCCAGAGAGACCAGTG+AGG | 0.749614 | 2.4:+17491374 | MS.gene059878:CDS |
| GAGTCAGACAAATTACCCCG+AGG | 0.769107 | 2.4:+17494436 | MS.gene059878:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAATTAATGTCAAA+TGG | + | chr2.4:17491691-17491710 | MS.gene059878:intron | 10.0% |
| !! | AAATACAGCAAAATATATTT+GGG | - | chr2.4:17491543-17491562 | None:intergenic | 15.0% |
| !! | AATAATATATAATCATAGCA+AGG | - | chr2.4:17492754-17492773 | None:intergenic | 15.0% |
| !! | ATTGATCATAAACTTATTAT+AGG | + | chr2.4:17491988-17492007 | MS.gene059878:intron | 15.0% |
| !! | TTGAATCCAATTAAAATATT+CGG | + | chr2.4:17494589-17494608 | MS.gene059878:CDS | 15.0% |
| !!! | CTACACTTTAAAATTTAAAA+TGG | - | chr2.4:17492398-17492417 | None:intergenic | 15.0% |
| !!! | GATTATTTTTTATGACATTA+AGG | + | chr2.4:17492163-17492182 | MS.gene059878:intron | 15.0% |
| !!! | TAATGCTTTAAAAATTTGAA+AGG | - | chr2.4:17493860-17493879 | None:intergenic | 15.0% |
| !!! | TTATTTTCAGAAGAAAATTA+CGG | - | chr2.4:17494711-17494730 | None:intergenic | 15.0% |
| !!! | TTGGTTATTTTTTAATGTAT+AGG | + | chr2.4:17494256-17494275 | MS.gene059878:intron | 15.0% |
| !! | AAAAGAGAAATTAGTAAGAT+GGG | - | chr2.4:17492847-17492866 | None:intergenic | 20.0% |
| !! | AGTTCTATAAATGTTATGTT+TGG | + | chr2.4:17493243-17493262 | MS.gene059878:intron | 20.0% |
| !! | CAAATACAGCAAAATATATT+TGG | - | chr2.4:17491544-17491563 | None:intergenic | 20.0% |
| !! | CAGTTTACTTAATTTAAATC+TGG | + | chr2.4:17492472-17492491 | MS.gene059878:intron | 20.0% |
| !! | CTAACTAAAAATTTAACAGA+CGG | - | chr2.4:17492676-17492695 | None:intergenic | 20.0% |
| !! | GCTATGATTATATATTATTC+TGG | + | chr2.4:17492755-17492774 | MS.gene059878:intron | 20.0% |
| !! | TAAAAGAGAAATTAGTAAGA+TGG | - | chr2.4:17492848-17492867 | None:intergenic | 20.0% |
| !! | TGTCATAAAAAATAATCGAA+AGG | - | chr2.4:17492160-17492179 | None:intergenic | 20.0% |
| !! | TTTACTTAATTTAAATCTGG+CGG | + | chr2.4:17492475-17492494 | MS.gene059878:intron | 20.0% |
| !!! | AAAATATATTTGGGTTTTGT+GGG | - | chr2.4:17491534-17491553 | None:intergenic | 20.0% |
| !!! | AAGTAATGATTGTTTTACTA+TGG | + | chr2.4:17494030-17494049 | MS.gene059878:intron | 20.0% |
| !!! | AATTTTTAAAGCATTATCCT+TGG | + | chr2.4:17493864-17493883 | MS.gene059878:intron | 20.0% |
| !!! | ACATCAGTTAAATGAATTTT+AGG | - | chr2.4:17494532-17494551 | None:intergenic | 20.0% |
| !!! | ATTGATAGTATATAAGGTTT+TGG | - | chr2.4:17494006-17494025 | None:intergenic | 20.0% |
| !!! | ATTTTTAAAGCATTATCCTT+GGG | + | chr2.4:17493865-17493884 | MS.gene059878:intron | 20.0% |
| !!! | TTCTGAAAATAACTTCATAT+TGG | + | chr2.4:17494719-17494738 | MS.gene059878:intron | 20.0% |
| !!! | TTCTTCATGTTTATTTTTTG+AGG | + | chr2.4:17492130-17492149 | MS.gene059878:CDS | 20.0% |
| !!! | TTCTTCATTGATAGTATATA+AGG | - | chr2.4:17494012-17494031 | None:intergenic | 20.0% |
| ! | AACTCAAACTTGAGATTAAA+TGG | - | chr2.4:17492516-17492535 | None:intergenic | 25.0% |
| ! | AATACATAGAAAAGCCAATT+TGG | - | chr2.4:17492448-17492467 | None:intergenic | 25.0% |
| ! | AATCCAATTAAAATATTCGG+TGG | + | chr2.4:17494592-17494611 | MS.gene059878:CDS | 25.0% |
| ! | AATTTAAATTGAGCAGAATG+TGG | + | chr2.4:17493283-17493302 | MS.gene059878:intron | 25.0% |
| ! | ATAACCAAAATTAAGTTCAC+TGG | - | chr2.4:17494244-17494263 | None:intergenic | 25.0% |
| ! | ATACATAGAAAAGCCAATTT+GGG | - | chr2.4:17492447-17492466 | None:intergenic | 25.0% |
| ! | ATACTAAAGCCTATTTGTAA+AGG | - | chr2.4:17493893-17493912 | None:intergenic | 25.0% |
| ! | ATGGATTCTCATATAAAGTT+GGG | - | chr2.4:17494630-17494649 | None:intergenic | 25.0% |
| ! | ATTTAAATTGAGCAGAATGT+GGG | + | chr2.4:17493284-17493303 | MS.gene059878:intron | 25.0% |
| ! | CAAAAAGAAGAATAAAGAAC+TGG | - | chr2.4:17492791-17492810 | None:intergenic | 25.0% |
| ! | CAACAACATTTGTAACAAAA+TGG | - | chr2.4:17492284-17492303 | None:intergenic | 25.0% |
| ! | CTGAGTTATGTATTTGAATA+GGG | + | chr2.4:17493356-17493375 | MS.gene059878:intron | 25.0% |
| ! | GAAAATTCACTGTTTGTTTA+TGG | + | chr2.4:17492244-17492263 | MS.gene059878:intron | 25.0% |
| ! | TAATAGCTTAACTAAGTTGT+TGG | - | chr2.4:17491619-17491638 | None:intergenic | 25.0% |
| ! | TATAATCATAGCAAGGAAAT+TGG | - | chr2.4:17492747-17492766 | None:intergenic | 25.0% |
| ! | TGAGTTATGTATTTGAATAG+GGG | + | chr2.4:17493357-17493376 | MS.gene059878:intron | 25.0% |
| ! | TTCACTCAAGTAAAAAACTA+TGG | - | chr2.4:17493768-17493787 | None:intergenic | 25.0% |
| ! | TTGATGAAAATGTCAAAAGA+GGG | - | chr2.4:17492940-17492959 | None:intergenic | 25.0% |
| ! | TTTGATGAAAATGTCAAAAG+AGG | - | chr2.4:17492941-17492960 | None:intergenic | 25.0% |
| !! | AAAACTTCTTCCTTTTATTG+CGG | + | chr2.4:17491943-17491962 | MS.gene059878:intron | 25.0% |
| !! | AATGGATTCTCATATAAAGT+TGG | - | chr2.4:17494631-17494650 | None:intergenic | 25.0% |
| !! | AATTCTTTTACTGCACATAA+AGG | - | chr2.4:17491884-17491903 | None:intergenic | 25.0% |
| !! | ATTCTTTTACTGCACATAAA+GGG | - | chr2.4:17491883-17491902 | None:intergenic | 25.0% |
| !! | CATTTTGTTACAAATGTTGT+TGG | + | chr2.4:17492282-17492301 | MS.gene059878:intron | 25.0% |
| !! | TAATCCAGTGAACTTAATTT+TGG | + | chr2.4:17494237-17494256 | MS.gene059878:intron | 25.0% |
| !! | TATAATTATGCCAGTTGTTT+TGG | + | chr2.4:17493738-17493757 | MS.gene059878:intron | 25.0% |
| !! | TCGTGATATCATATTTCTAT+TGG | - | chr2.4:17493956-17493975 | None:intergenic | 25.0% |
| !! | TGATAAAATGACATTGATTG+AGG | + | chr2.4:17494465-17494484 | MS.gene059878:CDS | 25.0% |
| !! | TTGATAATACGATCTTAGTT+TGG | + | chr2.4:17493067-17493086 | MS.gene059878:intron | 25.0% |
| !!! | ATTTTGAAAAAGATGCATAC+TGG | + | chr2.4:17492960-17492979 | MS.gene059878:CDS | 25.0% |
| !!! | CAAAATATATTTGGGTTTTG+TGG | - | chr2.4:17491535-17491554 | None:intergenic | 25.0% |
| !!! | CAATCAATGTCATTTTATCA+AGG | - | chr2.4:17494465-17494484 | None:intergenic | 25.0% |
| !!! | GTTAAATTTTTAGTTAGTGC+CGG | + | chr2.4:17492679-17492698 | MS.gene059878:CDS | 25.0% |
| !!! | GTTTAAACTTTAAAATCCGT+TGG | + | chr2.4:17493662-17493681 | MS.gene059878:intron | 25.0% |
| !!! | TGTTTTGGATTCAAAAGTTA+AGG | + | chr2.4:17493039-17493058 | MS.gene059878:intron | 25.0% |
| !!! | TGTTTTTAACCTCTTTATGT+TGG | + | chr2.4:17494745-17494764 | MS.gene059878:intron | 25.0% |
| !!! | TTCACAATTTTCTCTAGTTT+TGG | + | chr2.4:17493324-17493343 | MS.gene059878:intron | 25.0% |
| !!! | TTGTTTATTTTGGCTATGTT+TGG | + | chr2.4:17491593-17491612 | MS.gene059878:intron | 25.0% |
| AAAAGATCTTTATCTCTGGA+TGG | + | chr2.4:17492633-17492652 | MS.gene059878:CDS | 30.0% | |
| AAACACTTGTAAGACTGTTT+GGG | - | chr2.4:17491821-17491840 | None:intergenic | 30.0% | |
| AACTAGAGAAAATTGTGAAC+AGG | - | chr2.4:17493323-17493342 | None:intergenic | 30.0% | |
| AAGAAGCTGAAAACAGTTTA+TGG | + | chr2.4:17491766-17491785 | MS.gene059878:intron | 30.0% | |
| AATCTCTTTCCTTTATGTGA+TGG | + | chr2.4:17492323-17492342 | MS.gene059878:intron | 30.0% | |
| ACTGATTATTTGTAAACCAC+TGG | + | chr2.4:17494071-17494090 | MS.gene059878:intron | 30.0% | |
| ACTTGCTTAAGATTAAGAAC+AGG | - | chr2.4:17492539-17492558 | None:intergenic | 30.0% | |
| AGTTAAGCTATTATGCTGTA+AGG | + | chr2.4:17491626-17491645 | MS.gene059878:intron | 30.0% | |
| ATCCATTATCCATCACATAA+AGG | - | chr2.4:17492335-17492354 | None:intergenic | 30.0% | |
| CAAACAGATGAGAATATTAC+CGG | - | chr2.4:17492701-17492720 | None:intergenic | 30.0% | |
| CAATTGAGAAAACAAAAACG+TGG | - | chr2.4:17493539-17493558 | None:intergenic | 30.0% | |
| CCTATTCAAATACATAACTC+AGG | - | chr2.4:17493358-17493377 | None:intergenic | 30.0% | |
| CCTGAGTTATGTATTTGAAT+AGG | + | chr2.4:17493355-17493374 | MS.gene059878:intron | 30.0% | |
| GTTAAGCTATTATGCTGTAA+GGG | + | chr2.4:17491627-17491646 | MS.gene059878:intron | 30.0% | |
| GTTGAATCGAAAGAAACTAA+AGG | + | chr2.4:17492071-17492090 | MS.gene059878:CDS | 30.0% | |
| TAAACACTTGTAAGACTGTT+TGG | - | chr2.4:17491822-17491841 | None:intergenic | 30.0% | |
| TACATAATAATAGCATCCAG+TGG | - | chr2.4:17494090-17494109 | None:intergenic | 30.0% | |
| TATAGAACTTCTCAAGTCAA+CGG | - | chr2.4:17493232-17493251 | None:intergenic | 30.0% | |
| TCATTGCAAAAAGGATAACA+AGG | + | chr2.4:17492049-17492068 | MS.gene059878:CDS | 30.0% | |
| TCTAGTCTATTTGTGACATT+TGG | + | chr2.4:17492558-17492577 | MS.gene059878:intron | 30.0% | |
| TGTTGAAAACAACAAACCAA+CGG | - | chr2.4:17493681-17493700 | None:intergenic | 30.0% | |
| ! | AAACTTCTTCCTTTTATTGC+GGG | + | chr2.4:17491944-17491963 | MS.gene059878:intron | 30.0% |
| ! | ATAATACGATCTTAGTTTGG+TGG | + | chr2.4:17493070-17493089 | MS.gene059878:intron | 30.0% |
| ! | TTGTTATCCTTTTTGCAATG+AGG | - | chr2.4:17492050-17492069 | None:intergenic | 30.0% |
| !! | ATTGTTTTACTATGGTTGCA+TGG | + | chr2.4:17494038-17494057 | MS.gene059878:intron | 30.0% |
| !! | CAATTGTTGATGACCATATA+TGG | + | chr2.4:17493553-17493572 | MS.gene059878:CDS | 30.0% |
| !! | CTCATCTGTTTGTTATCTTA+AGG | + | chr2.4:17492709-17492728 | MS.gene059878:intron | 30.0% |
| !! | GAGTTCGGATTTGTTTATTT+TGG | + | chr2.4:17491583-17491602 | MS.gene059878:intron | 30.0% |
| !! | TTCCTTTATGTGATGGATAA+TGG | + | chr2.4:17492330-17492349 | MS.gene059878:intron | 30.0% |
| !!! | GGGTTATTGGTTTTTGATTA+TGG | + | chr2.4:17491964-17491983 | MS.gene059878:intron | 30.0% |
| AAAAATAAGCGCAAGCATCT+TGG | + | chr2.4:17493714-17493733 | MS.gene059878:intron | 35.0% | |
| AAACTACCTTGAAGAGCTTA+TGG | + | chr2.4:17491743-17491762 | MS.gene059878:intron | 35.0% | |
| AACATTGCCGATGGATAAAT+TGG | + | chr2.4:17493825-17493844 | MS.gene059878:intron | 35.0% | |
| AACCAATAACCCGCAATAAA+AGG | - | chr2.4:17491956-17491975 | None:intergenic | 35.0% | |
| AATTTGTCTGACTCATTGTG+AGG | - | chr2.4:17494430-17494449 | None:intergenic | 35.0% | |
| ACATTGCCGATGGATAAATT+GGG | + | chr2.4:17493826-17493845 | MS.gene059878:intron | 35.0% | |
| AGAAAACAAAAACGTGGTCA+TGG | - | chr2.4:17493533-17493552 | None:intergenic | 35.0% | |
| AGAACATAATGGTCATTACC+TGG | - | chr2.4:17494669-17494688 | None:intergenic | 35.0% | |
| AGACACAAACCTGGTAATTT+CGG | - | chr2.4:17493581-17493600 | None:intergenic | 35.0% | |
| AGGCAAAAGATCTTTATCTC+TGG | + | chr2.4:17492629-17492648 | MS.gene059878:CDS | 35.0% | |
| ATAATGGTCATTACCTGGTT+TGG | - | chr2.4:17494664-17494683 | None:intergenic | 35.0% | |
| ATAGAAAAGCCAATTTGGGA+GGG | - | chr2.4:17492443-17492462 | None:intergenic | 35.0% | |
| ATGAAAATGTCAAAAGAGGG+CGG | - | chr2.4:17492937-17492956 | None:intergenic | 35.0% | |
| ATTGATTGAGGTCTGCAAAT+TGG | + | chr2.4:17494477-17494496 | MS.gene059878:intron | 35.0% | |
| ATTGTCTACACTTCTAGTCT+AGG | + | chr2.4:17494115-17494134 | MS.gene059878:intron | 35.0% | |
| CACAAACCCAATTTATCCAT+CGG | - | chr2.4:17493835-17493854 | None:intergenic | 35.0% | |
| CATTCGCAAAAAAATGCAAG+TGG | - | chr2.4:17494302-17494321 | None:intergenic | 35.0% | |
| CTACAACAACCAACATAAAG+AGG | - | chr2.4:17494757-17494776 | None:intergenic | 35.0% | |
| CTGAAATTCACATACACAGA+AGG | - | chr2.4:17492602-17492621 | None:intergenic | 35.0% | |
| GGTAATTTCGGAACCATATA+TGG | - | chr2.4:17493569-17493588 | None:intergenic | 35.0% | |
| TATATGGTTCCGAAATTACC+AGG | + | chr2.4:17493569-17493588 | MS.gene059878:CDS | 35.0% | |
| TCTGCATGAGAATAAAAACG+TGG | - | chr2.4:17494399-17494418 | None:intergenic | 35.0% | |
| TGAAAATGAGAATGAAGTCG+AGG | + | chr2.4:17491423-17491442 | MS.gene059878:CDS | 35.0% | |
| TGCAAACTACTTGTTTAGGT+TGG | + | chr2.4:17494553-17494572 | MS.gene059878:intron | 35.0% | |
| TGCATACTGGAAACTGTTAA+AGG | + | chr2.4:17492973-17492992 | MS.gene059878:CDS | 35.0% | |
| TGTGTGCAAACTACTTGTTT+AGG | + | chr2.4:17494549-17494568 | MS.gene059878:intron | 35.0% | |
| TTCTCTTTGTTCCTGAATAC+AGG | - | chr2.4:17491469-17491488 | None:intergenic | 35.0% | |
| ! | AGAAATTAGTAAGATGGGCT+CGG | - | chr2.4:17492842-17492861 | None:intergenic | 35.0% |
| ! | CAGGAACAAAGAGAAAGTTT+TGG | + | chr2.4:17491474-17491493 | MS.gene059878:CDS | 35.0% |
| ! | GTATGATTGATGGATCTACA+GGG | + | chr2.4:17494198-17494217 | MS.gene059878:intron | 35.0% |
| ! | TACTCTTCTATGCACTGTTT+TGG | + | chr2.4:17493024-17493043 | MS.gene059878:intron | 35.0% |
| ! | TCATTTTATCAAGGCTTCCT+CGG | - | chr2.4:17494456-17494475 | None:intergenic | 35.0% |
| !! | AAAATATTCGGTGGCAGTTT+TGG | + | chr2.4:17494601-17494620 | MS.gene059878:CDS | 35.0% |
| !! | TTCCTTTTATTGCGGGTTAT+TGG | + | chr2.4:17491951-17491970 | MS.gene059878:intron | 35.0% |
| !!! | AAGTTTTGGTTACTTGCTCT+AGG | + | chr2.4:17491488-17491507 | MS.gene059878:CDS | 35.0% |
| !!! | CTGCCACCGAATATTTTAAT+TGG | - | chr2.4:17494598-17494617 | None:intergenic | 35.0% |
| !!! | CTTGCATTTTTTTGCGAATG+TGG | + | chr2.4:17494302-17494321 | MS.gene059878:intron | 35.0% |
| !!! | GTCTGTGTTTGTTTTGAGTT+CGG | + | chr2.4:17491568-17491587 | MS.gene059878:intron | 35.0% |
| AAATTTAACAGACGGACCGT+TGG | - | chr2.4:17492668-17492687 | None:intergenic | 40.0% | |
| AAGGAGGAAAATGCATGAGA+TGG | + | chr2.4:17494839-17494858 | MS.gene059878:CDS | 40.0% | |
| AATTTAACAGACGGACCGTT+GGG | - | chr2.4:17492667-17492686 | None:intergenic | 40.0% | |
| ACAAAAACGTGGTCATGGAA+AGG | - | chr2.4:17493528-17493547 | None:intergenic | 40.0% | |
| AGAAGGTCAAAGCAAAGACA+AGG | + | chr2.4:17494820-17494839 | MS.gene059878:CDS | 40.0% | |
| AGTGTGCACAGAGAACATAA+TGG | - | chr2.4:17494680-17494699 | None:intergenic | 40.0% | |
| ATGGAGGAATTGAAGCTTAC+TGG | + | chr2.4:17492893-17492912 | MS.gene059878:CDS | 40.0% | |
| ATGTGAATTTCAGTGCAGGA+AGG | + | chr2.4:17492609-17492628 | MS.gene059878:intron | 40.0% | |
| ATTATATGTGTCGCCAAACC+AGG | + | chr2.4:17494648-17494667 | MS.gene059878:CDS | 40.0% | |
| CAATTTGGGAGGGAAAACAA+AGG | - | chr2.4:17492433-17492452 | None:intergenic | 40.0% | |
| CACATATCTGCAAACTCATC+AGG | - | chr2.4:17494879-17494898 | None:intergenic | 40.0% | |
| CATAGAAAAGCCAATTTGGG+AGG | - | chr2.4:17492444-17492463 | None:intergenic | 40.0% | |
| CCAGGTTCAACATCAAATGT+CGG | - | chr2.4:17492016-17492035 | None:intergenic | 40.0% | |
| CCTATTTGTAAAGGAACCCA+AGG | - | chr2.4:17493884-17493903 | None:intergenic | 40.0% | |
| CCTTCGGAGTTTCAAAAATC+TGG | - | chr2.4:17493488-17493507 | None:intergenic | 40.0% | |
| CCTTGGGTTCCTTTACAAAT+AGG | + | chr2.4:17493881-17493900 | MS.gene059878:intron | 40.0% | |
| CGCTTTGCAGAAGAAGAAAA+AGG | + | chr2.4:17494782-17494801 | MS.gene059878:CDS | 40.0% | |
| CTATGGCTAACCAAAACAAC+TGG | - | chr2.4:17493751-17493770 | None:intergenic | 40.0% | |
| CTGATGAGTTTGCAGATATG+TGG | + | chr2.4:17494877-17494896 | MS.gene059878:CDS | 40.0% | |
| CTTACTGGGAATCACCTAAA+AGG | + | chr2.4:17492908-17492927 | MS.gene059878:CDS | 40.0% | |
| CTTATCCTTCCATCCCAAAA+GGG | - | chr2.4:17491401-17491420 | None:intergenic | 40.0% | |
| CTTCTTCCATAAGCTCTTCA+AGG | - | chr2.4:17491752-17491771 | None:intergenic | 40.0% | |
| GAAGAGAAAACGAAGCGAAA+AGG | + | chr2.4:17491318-17491337 | MS.gene059878:CDS | 40.0% | |
| GAGATGCTGTTACAGGTATT+TGG | + | chr2.4:17492995-17493014 | MS.gene059878:intron | 40.0% | |
| GTAGATCCATCAATCATACG+TGG | - | chr2.4:17494197-17494216 | None:intergenic | 40.0% | |
| GTGTATGTGAATTTCAGTGC+AGG | + | chr2.4:17492605-17492624 | MS.gene059878:intron | 40.0% | |
| GTTAAAGGAGATGCTGTTAC+AGG | + | chr2.4:17492988-17493007 | MS.gene059878:CDS | 40.0% | |
| TCTTATCCTTCCATCCCAAA+AGG | - | chr2.4:17491402-17491421 | None:intergenic | 40.0% | |
| TGAAAATGTCAAAAGAGGGC+GGG | - | chr2.4:17492936-17492955 | None:intergenic | 40.0% | |
| TGAGAATGAAGTCGAGGTTA+AGG | + | chr2.4:17491429-17491448 | MS.gene059878:CDS | 40.0% | |
| TGCAAATTCAGACACAAACC+TGG | - | chr2.4:17493590-17493609 | None:intergenic | 40.0% | |
| TGGAGGAATTGAAGCTTACT+GGG | + | chr2.4:17492894-17492913 | MS.gene059878:CDS | 40.0% | |
| TTCTTTGCTAACATTGCCGA+TGG | + | chr2.4:17493816-17493835 | MS.gene059878:intron | 40.0% | |
| TTGCAGAAGAAGAAAAAGGC+TGG | + | chr2.4:17494786-17494805 | MS.gene059878:CDS | 40.0% | |
| ! | ATTTTATCAAGGCTTCCTCG+GGG | - | chr2.4:17494454-17494473 | None:intergenic | 40.0% |
| ! | CATTTTATCAAGGCTTCCTC+GGG | - | chr2.4:17494455-17494474 | None:intergenic | 40.0% |
| ! | CGTATGATTGATGGATCTAC+AGG | + | chr2.4:17494197-17494216 | MS.gene059878:intron | 40.0% |
| ! | GCTCTAGGCGTATTGTTTAT+AGG | + | chr2.4:17491503-17491522 | MS.gene059878:CDS | 40.0% |
| ! | GGAGCAACATCTTCCTTTTT+GGG | - | chr2.4:17491361-17491380 | None:intergenic | 40.0% |
| ! | TGGAGCAACATCTTCCTTTT+TGG | - | chr2.4:17491362-17491381 | None:intergenic | 40.0% |
| ! | TGGTTTGGCGACACATATAA+TGG | - | chr2.4:17494649-17494668 | None:intergenic | 40.0% |
| ! | TTAGCCTTTCTATGGTCCTT+CGG | - | chr2.4:17493504-17493523 | None:intergenic | 40.0% |
| ! | TTTATGTGCGCACTTTTCTG+AGG | + | chr2.4:17493143-17493162 | MS.gene059878:intron | 40.0% |
| !! | TACTTGTTTAGGTTGGTCCA+CGG | + | chr2.4:17494560-17494579 | MS.gene059878:intron | 40.0% |
| !!! | CCAGATTTTTGAAACTCCGA+AGG | + | chr2.4:17493485-17493504 | MS.gene059878:intron | 40.0% |
| !!! | CTTAGTTTGGTGGTGCTTTT+GGG | + | chr2.4:17493080-17493099 | MS.gene059878:intron | 40.0% |
| !!! | CTTTGTTTTCCCTCCCAAAT+TGG | + | chr2.4:17492431-17492450 | MS.gene059878:intron | 40.0% |
| !!! | GCGCACATGCATTTTTTTCT+TGG | + | chr2.4:17493398-17493417 | MS.gene059878:intron | 40.0% |
| !!! | TCTTAGTTTGGTGGTGCTTT+TGG | + | chr2.4:17493079-17493098 | MS.gene059878:intron | 40.0% |
| !!! | TTAGTTTGGTGGTGCTTTTG+GGG | + | chr2.4:17493081-17493100 | MS.gene059878:intron | 40.0% |
| AACTCCGAAGGACCATAGAA+AGG | + | chr2.4:17493497-17493516 | MS.gene059878:CDS | 45.0% | |
| ACGCTACCACGTATGATTGA+TGG | + | chr2.4:17494188-17494207 | MS.gene059878:intron | 45.0% | |
| AGGTCAAAGCAAAGACAAGG+AGG | + | chr2.4:17494823-17494842 | MS.gene059878:CDS | 45.0% | |
| ATGGTGCTTCACCTGTATTC+AGG | + | chr2.4:17491455-17491474 | MS.gene059878:CDS | 45.0% | |
| ATTGGATTCAAGCAGAACCG+TGG | - | chr2.4:17494580-17494599 | None:intergenic | 45.0% | |
| ATTTAACAGACGGACCGTTG+GGG | - | chr2.4:17492666-17492685 | None:intergenic | 45.0% | |
| CCGACATTTGATGTTGAACC+TGG | + | chr2.4:17492013-17492032 | MS.gene059878:CDS | 45.0% | |
| GAAGTCGAGGTTAAGGAGAA+TGG | + | chr2.4:17491436-17491455 | MS.gene059878:CDS | 45.0% | |
| GCAAGACACAAGAGTCAGAT+GGG | - | chr2.4:17492360-17492379 | None:intergenic | 45.0% | |
| GCTTCTGCCTCATTGCAAAA+AGG | + | chr2.4:17492040-17492059 | MS.gene059878:CDS | 45.0% | |
| GGCTGGAACATTTGCAAAGA+AGG | + | chr2.4:17494803-17494822 | MS.gene059878:CDS | 45.0% | |
| TGCAAGACACAAGAGTCAGA+TGG | - | chr2.4:17492361-17492380 | None:intergenic | 45.0% | |
| TGTGCACTGAAAAGCAGTGA+AGG | - | chr2.4:17492871-17492890 | None:intergenic | 45.0% | |
| ! | AATCATACGTGGTAGCGTCA+TGG | - | chr2.4:17494186-17494205 | None:intergenic | 45.0% |
| ! | CTGCACATAAAGGGCTTGTT+TGG | - | chr2.4:17491874-17491893 | None:intergenic | 45.0% |
| ! | CTTTTCAGTGCACACAATGG+AGG | + | chr2.4:17492877-17492896 | MS.gene059878:intron | 45.0% |
| ! | GGAAAGGCTTAGCCTTTCTA+TGG | - | chr2.4:17493512-17493531 | None:intergenic | 45.0% |
| !! | ATATTCGGTGGCAGTTTTGG+AGG | + | chr2.4:17494604-17494623 | MS.gene059878:CDS | 45.0% |
| !! | CTGCTTTTCAGTGCACACAA+TGG | + | chr2.4:17492874-17492893 | MS.gene059878:intron | 45.0% |
| AAGCGAAAAGGCTGAAGCTG+TGG | + | chr2.4:17491330-17491349 | MS.gene059878:CDS | 50.0% | |
| AATGAGGCAGAAGCGATACC+AGG | - | chr2.4:17492034-17492053 | None:intergenic | 50.0% | |
| CTCAACAAGCTCGTTCAAGG+TGG | - | chr2.4:17492099-17492118 | None:intergenic | 50.0% | |
| GAGCTCAACAAGCTCGTTCA+AGG | - | chr2.4:17492102-17492121 | None:intergenic | 50.0% | |
| GAGTCAGACAAATTACCCCG+AGG | + | chr2.4:17494436-17494455 | MS.gene059878:CDS | 50.0% | |
| TGGATGGCAAAATGCCCCAA+CGG | + | chr2.4:17492649-17492668 | MS.gene059878:CDS | 50.0% | |
| ! | AGACCAGTGAGGACCCTTTT+GGG | + | chr2.4:17491385-17491404 | MS.gene059878:CDS | 50.0% |
| AGCTGTGGCTGTGCCCAAAA+AGG | + | chr2.4:17491345-17491364 | MS.gene059878:CDS | 55.0% | |
| CATCCCAAAAGGGTCCTCAC+TGG | - | chr2.4:17491391-17491410 | None:intergenic | 55.0% | |
| CTCATCAGGCTCCAGAGGAT+TGG | - | chr2.4:17494865-17494884 | None:intergenic | 55.0% | |
| GCAAACTCATCAGGCTCCAG+AGG | - | chr2.4:17494870-17494889 | None:intergenic | 55.0% | |
| GCATGAGATGGCCAATCCTC+TGG | + | chr2.4:17494851-17494870 | MS.gene059878:CDS | 55.0% | |
| TTGCTCCAGAGAGACCAGTG+AGG | + | chr2.4:17491374-17491393 | MS.gene059878:CDS | 55.0% | |
| ! | AAAGAGGGCGGGAGCCTTTT+AGG | - | chr2.4:17492925-17492944 | None:intergenic | 55.0% |
| ! | GAGACCAGTGAGGACCCTTT+TGG | + | chr2.4:17491384-17491403 | MS.gene059878:CDS | 55.0% |
| !! | CAGTGAGGACCCTTTTGGGA+TGG | + | chr2.4:17491389-17491408 | MS.gene059878:CDS | 55.0% |
| !!! | GAGGACCCTTTTGGGATGGA+AGG | + | chr2.4:17491393-17491412 | MS.gene059878:CDS | 55.0% |
| ! | AGGGTCCTCACTGGTCTCTC+TGG | - | chr2.4:17491382-17491401 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 17491313 | 17494908 | 17491313 | ID=MS.gene059878 |
| chr2.4 | mRNA | 17491313 | 17494908 | 17491313 | ID=MS.gene059878.t1;Parent=MS.gene059878 |
| chr2.4 | exon | 17491313 | 17491524 | 17491313 | ID=MS.gene059878.t1.exon1;Parent=MS.gene059878.t1 |
| chr2.4 | CDS | 17491313 | 17491524 | 17491313 | ID=cds.MS.gene059878.t1;Parent=MS.gene059878.t1 |
| chr2.4 | exon | 17492010 | 17492151 | 17492010 | ID=MS.gene059878.t1.exon2;Parent=MS.gene059878.t1 |
| chr2.4 | CDS | 17492010 | 17492151 | 17492010 | ID=cds.MS.gene059878.t1;Parent=MS.gene059878.t1 |
| chr2.4 | exon | 17492622 | 17492700 | 17492622 | ID=MS.gene059878.t1.exon3;Parent=MS.gene059878.t1 |
| chr2.4 | CDS | 17492622 | 17492700 | 17492622 | ID=cds.MS.gene059878.t1;Parent=MS.gene059878.t1 |
| chr2.4 | exon | 17492885 | 17493009 | 17492885 | ID=MS.gene059878.t1.exon4;Parent=MS.gene059878.t1 |
| chr2.4 | CDS | 17492885 | 17493009 | 17492885 | ID=cds.MS.gene059878.t1;Parent=MS.gene059878.t1 |
| chr2.4 | exon | 17493489 | 17493590 | 17493489 | ID=MS.gene059878.t1.exon5;Parent=MS.gene059878.t1 |
| chr2.4 | CDS | 17493489 | 17493590 | 17493489 | ID=cds.MS.gene059878.t1;Parent=MS.gene059878.t1 |
| chr2.4 | exon | 17494418 | 17494486 | 17494418 | ID=MS.gene059878.t1.exon6;Parent=MS.gene059878.t1 |
| chr2.4 | CDS | 17494418 | 17494486 | 17494418 | ID=cds.MS.gene059878.t1;Parent=MS.gene059878.t1 |
| chr2.4 | exon | 17494571 | 17494669 | 17494571 | ID=MS.gene059878.t1.exon7;Parent=MS.gene059878.t1 |
| chr2.4 | CDS | 17494571 | 17494669 | 17494571 | ID=cds.MS.gene059878.t1;Parent=MS.gene059878.t1 |
| chr2.4 | exon | 17494777 | 17494908 | 17494777 | ID=MS.gene059878.t1.exon8;Parent=MS.gene059878.t1 |
| chr2.4 | CDS | 17494777 | 17494908 | 17494777 | ID=cds.MS.gene059878.t1;Parent=MS.gene059878.t1 |
| Gene Sequence |
| Protein sequence |
