Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53935.t1 | XP_013458768.1 | 84.7 | 249 | 32 | 3 | 4 | 252 | 3 | 245 | 5.40E-100 | 374 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53935.t1 | A0A072V3S7 | 84.7 | 249 | 32 | 3 | 4 | 252 | 3 | 245 | 3.9e-100 | 374.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049424 | MS.gene53935 | 0.821658 | 3.59E-53 | -1.69E-46 |
| MS.gene049653 | MS.gene53935 | 0.828631 | 8.08E-55 | -1.69E-46 |
| MS.gene049951 | MS.gene53935 | 0.800165 | 1.64E-48 | -1.69E-46 |
| MS.gene050105 | MS.gene53935 | 0.829986 | 3.79E-55 | -1.69E-46 |
| MS.gene050559 | MS.gene53935 | 0.804086 | 2.56E-49 | -1.69E-46 |
| MS.gene050561 | MS.gene53935 | 0.800081 | 1.70E-48 | -1.69E-46 |
| MS.gene050680 | MS.gene53935 | 0.830014 | 3.73E-55 | -1.69E-46 |
| MS.gene050987 | MS.gene53935 | 0.821302 | 4.34E-53 | -1.69E-46 |
| MS.gene051243 | MS.gene53935 | 0.802638 | 5.10E-49 | -1.69E-46 |
| MS.gene051368 | MS.gene53935 | 0.80654 | 7.83E-50 | -1.69E-46 |
| MS.gene052239 | MS.gene53935 | -0.814304 | 1.65E-51 | -1.69E-46 |
| MS.gene052426 | MS.gene53935 | 0.810094 | 1.37E-50 | -1.69E-46 |
| MS.gene052954 | MS.gene53935 | 0.809737 | 1.63E-50 | -1.69E-46 |
| MS.gene053188 | MS.gene53935 | 0.829393 | 5.28E-55 | -1.69E-46 |
| MS.gene053216 | MS.gene53935 | 0.83715 | 6.16E-57 | -1.69E-46 |
| MS.gene053565 | MS.gene53935 | 0.825305 | 5.04E-54 | -1.69E-46 |
| MS.gene05364 | MS.gene53935 | 0.804729 | 1.88E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene53935 | 0.80568 | 1.19E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene53935 | 0.806272 | 8.91E-50 | -1.69E-46 |
| MS.gene054537 | MS.gene53935 | 0.823099 | 1.66E-53 | -1.69E-46 |
| MS.gene054657 | MS.gene53935 | 0.861293 | 1.14E-63 | -1.69E-46 |
| MS.gene05510 | MS.gene53935 | 0.847444 | 1.15E-59 | -1.69E-46 |
| MS.gene055230 | MS.gene53935 | 0.811738 | 6.02E-51 | -1.69E-46 |
| MS.gene055623 | MS.gene53935 | 0.805296 | 1.43E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene53935 | 0.824526 | 7.70E-54 | -1.69E-46 |
| MS.gene056480 | MS.gene53935 | 0.833354 | 5.60E-56 | -1.69E-46 |
| MS.gene056506 | MS.gene53935 | 0.813828 | 2.10E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene53935 | 0.810035 | 1.41E-50 | -1.69E-46 |
| MS.gene057108 | MS.gene53935 | 0.826883 | 2.12E-54 | -1.69E-46 |
| MS.gene057109 | MS.gene53935 | 0.823532 | 1.32E-53 | -1.69E-46 |
| MS.gene057110 | MS.gene53935 | 0.822417 | 2.40E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene53935 | 0.816858 | 4.45E-52 | -1.69E-46 |
| MS.gene057392 | MS.gene53935 | 0.801181 | 1.02E-48 | -1.69E-46 |
| MS.gene05795 | MS.gene53935 | 0.831006 | 2.13E-55 | -1.69E-46 |
| MS.gene058634 | MS.gene53935 | 0.811588 | 6.50E-51 | -1.69E-46 |
| MS.gene059161 | MS.gene53935 | 0.828646 | 8.01E-55 | -1.69E-46 |
| MS.gene059317 | MS.gene53935 | 0.841057 | 5.99E-58 | -1.69E-46 |
| MS.gene059710 | MS.gene53935 | 0.813808 | 2.12E-51 | -1.69E-46 |
| MS.gene060322 | MS.gene53935 | 0.801725 | 7.86E-49 | -1.69E-46 |
| MS.gene060879 | MS.gene53935 | 0.803453 | 3.46E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53935.t1 | MTR_3g006350 | 91.968 | 249 | 14 | 3 | 4 | 252 | 3 | 245 | 1.30e-116 | 333 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53935.t1 | AT4G13530 | 49.541 | 109 | 43 | 3 | 147 | 252 | 171 | 270 | 9.05e-28 | 107 |
| MS.gene53935.t1 | AT4G13530 | 47.706 | 109 | 44 | 3 | 147 | 252 | 171 | 269 | 3.55e-26 | 103 |
| MS.gene53935.t1 | AT4G10080 | 47.222 | 108 | 51 | 2 | 145 | 252 | 224 | 325 | 3.65e-26 | 104 |
Find 50 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAACGAGGAAGATTATT+AGG | 0.226770 | 3.2:+1052946 | None:intergenic |
| GGCATCGAAACCACCGAAAA+AGG | 0.271341 | 3.2:+1052715 | None:intergenic |
| AGAACTACTGGAAATCGAAT+TGG | 0.319373 | 3.2:+1053029 | None:intergenic |
| GGTGGAGGAAGAGGGGAAGG+AGG | 0.366973 | 3.2:-1052797 | MS.gene53935:CDS |
| AGAATTTGAACTAGAACTAC+TGG | 0.379756 | 3.2:+1053017 | None:intergenic |
| TAACCTTGCTCTTGATGATA+AGG | 0.392529 | 3.2:-1052599 | MS.gene53935:intron |
| CTTCATCTCATACTCATAAC+AGG | 0.393455 | 3.2:+1049686 | None:intergenic |
| TCCAACGAGGAAGATTATTA+GGG | 0.407060 | 3.2:+1052947 | None:intergenic |
| GGAATTTGATTAATCTGAAT+CGG | 0.415503 | 3.2:+1053051 | None:intergenic |
| TTCGGCGGTGGTGGAGGAAG+AGG | 0.439590 | 3.2:-1052806 | MS.gene53935:CDS |
| GCAGCTGCAGCAACAGACAA+AGG | 0.445749 | 3.2:+1052694 | None:intergenic |
| TGGTATTGATTCGGCGGTGG+TGG | 0.446978 | 3.2:-1052815 | MS.gene53935:CDS |
| GAACTACTGGAAATCGAATT+GGG | 0.452405 | 3.2:+1053030 | None:intergenic |
| TGTTGAAAGTGGTATTGATT+CGG | 0.452839 | 3.2:-1052824 | MS.gene53935:CDS |
| AAGAAATCGAAGCTGGTGAA+TGG | 0.460369 | 3.2:-1053176 | MS.gene53935:CDS |
| GAAGGAGGATGAGAAGAGAT+TGG | 0.468996 | 3.2:-1052782 | MS.gene53935:CDS |
| TATTGATTCGGCGGTGGTGG+AGG | 0.476393 | 3.2:-1052812 | MS.gene53935:CDS |
| AACGCTAACAACGTCGCTAT+CGG | 0.480370 | 3.2:+1052912 | None:intergenic |
| ACCCTAATAATCTTCCTCGT+TGG | 0.489503 | 3.2:-1052948 | MS.gene53935:CDS |
| TCGGCGGTGGTGGAGGAAGA+GGG | 0.509828 | 3.2:-1052805 | MS.gene53935:CDS |
| AGAAATCGAAGCTGGTGAAT+GGG | 0.512521 | 3.2:-1053175 | MS.gene53935:CDS |
| GTAGAAGCAGCTGGAAGAGA+TGG | 0.515825 | 3.2:+1049722 | None:intergenic |
| CTGTTATGAGTATGAGATGA+AGG | 0.521354 | 3.2:-1049685 | None:intergenic |
| TGTCGGTGTAATTGATGATA+AGG | 0.528085 | 3.2:-1052866 | MS.gene53935:CDS |
| GGAAGAGATGGCCGTACCAC+AGG | 0.529983 | 3.2:+1049734 | None:intergenic |
| CATTGGAAGTGTTGAAACAT+TGG | 0.536933 | 3.2:-1052744 | MS.gene53935:CDS |
| AGAGTTATAGTAGAAGCAGC+TGG | 0.541321 | 3.2:+1049713 | None:intergenic |
| TAGGGCTTCTTATATTGGGA+AGG | 0.541352 | 3.2:-1052663 | MS.gene53935:CDS |
| ATGAGAAGAGATTGGTGTGG+TGG | 0.547065 | 3.2:-1052774 | MS.gene53935:CDS |
| GGTGGTGGAGGAAGAGGGGA+AGG | 0.547169 | 3.2:-1052800 | MS.gene53935:CDS |
| ATTGGAAGTGTTGAAACATT+GGG | 0.555110 | 3.2:-1052743 | MS.gene53935:CDS |
| GCAGAAGGTATCTCAGCTCA+AGG | 0.556362 | 3.2:-1049804 | MS.gene53935:intron |
| CAATGTTTCAACACTTCCAA+TGG | 0.558000 | 3.2:+1052745 | None:intergenic |
| GATGATGAGGTTGTTGAAAG+TGG | 0.576993 | 3.2:-1052835 | MS.gene53935:CDS |
| GATGAAGAAGAAATCGAAGC+TGG | 0.580562 | 3.2:-1053183 | MS.gene53935:CDS |
| CGGCGGTGGTGGAGGAAGAG+GGG | 0.591095 | 3.2:-1052804 | MS.gene53935:CDS |
| TAAGGTGGTTGTTGATGATG+AGG | 0.605001 | 3.2:-1052848 | MS.gene53935:CDS |
| GTTGCTAACAACGTCGCTGT+CGG | 0.607836 | 3.2:-1052883 | MS.gene53935:CDS |
| GGTGTGGTGGAAGGTACCAT+TGG | 0.609486 | 3.2:-1052761 | MS.gene53935:CDS |
| GAAGAGATTGGTGTGGTGGA+AGG | 0.610983 | 3.2:-1052770 | MS.gene53935:CDS |
| AAGTGGTATTGATTCGGCGG+TGG | 0.616167 | 3.2:-1052818 | MS.gene53935:CDS |
| TGACCTTATCATCAAGAGCA+AGG | 0.618665 | 3.2:+1052596 | None:intergenic |
| TGAGACGCATTCCTGTGGTA+CGG | 0.626161 | 3.2:-1049745 | MS.gene53935:CDS |
| CAGAAGGTATCTCAGCTCAA+GGG | 0.640337 | 3.2:-1049803 | MS.gene53935:CDS |
| CGGTGTAATTGATGATAAGG+TGG | 0.657270 | 3.2:-1052863 | MS.gene53935:CDS |
| AGTAGTGAGACGCATTCCTG+TGG | 0.658009 | 3.2:-1049750 | MS.gene53935:CDS |
| TGAAAGTGGTATTGATTCGG+CGG | 0.681398 | 3.2:-1052821 | MS.gene53935:CDS |
| CTGCTTCTACTATAACTCTG+AGG | 0.707236 | 3.2:-1049709 | MS.gene53935:CDS |
| AGGATGAGAAGAGATTGGTG+TGG | 0.742642 | 3.2:-1052777 | MS.gene53935:CDS |
| GAATCAGAATCATTCCAACG+AGG | 0.813094 | 3.2:+1052934 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTATATTTAAACTTTAAA+AGG | + | chr3.2:1051184-1051203 | None:intergenic | 10.0% |
| !!! | AAGAATTTTGATTATTAATT+TGG | - | chr3.2:1051444-1051463 | MS.gene53935:intron | 10.0% |
| !!! | ATTTTCTCATATTATATTAT+TGG | + | chr3.2:1050774-1050793 | None:intergenic | 10.0% |
| !!! | TATTTATCGTTTTTAAATTA+TGG | - | chr3.2:1050544-1050563 | MS.gene53935:intron | 10.0% |
| !! | AATTATTTCACTTATTCTTA+TGG | - | chr3.2:1051873-1051892 | MS.gene53935:intron | 15.0% |
| !! | ATAAATATATGATGAGATAA+GGG | + | chr3.2:1051560-1051579 | None:intergenic | 15.0% |
| !! | TAAGAATAAGTGAAATAATT+TGG | + | chr3.2:1051873-1051892 | None:intergenic | 15.0% |
| !! | TATTCAATCATGTTAATTTA+TGG | - | chr3.2:1051288-1051307 | MS.gene53935:intron | 15.0% |
| !! | TGTTGATATTCAATTATAAA+AGG | + | chr3.2:1051631-1051650 | None:intergenic | 15.0% |
| !!! | ATTACTTTAATAAGCTATTT+TGG | + | chr3.2:1051356-1051375 | None:intergenic | 15.0% |
| !!! | ATTCATTTTAGAATTGTTTA+TGG | - | chr3.2:1052709-1052728 | MS.gene53935:CDS | 15.0% |
| !!! | ATTTCATTTTCTCATATTAT+TGG | + | chr3.2:1051027-1051046 | None:intergenic | 15.0% |
| !! | AACACAAAATTTCAATTTGA+AGG | + | chr3.2:1050918-1050937 | None:intergenic | 20.0% |
| !! | CATAAATATATGATGAGATA+AGG | + | chr3.2:1051561-1051580 | None:intergenic | 20.0% |
| !! | TACTCAATCTCATTAATTTA+AGG | - | chr3.2:1051393-1051412 | MS.gene53935:intron | 20.0% |
| !! | TAGATATTAATCGTGAAAAA+CGG | + | chr3.2:1052292-1052311 | None:intergenic | 20.0% |
| !!! | AAATAAACTATTTTCTCTGT+AGG | - | chr3.2:1052735-1052754 | MS.gene53935:CDS | 20.0% |
| !!! | ACTTTTAATTTGAAGTGTTA+TGG | - | chr3.2:1050472-1050491 | MS.gene53935:intron | 20.0% |
| !!! | ATATTATATTATTGGTGTCT+AGG | + | chr3.2:1050830-1050849 | None:intergenic | 20.0% |
| !!! | ATCTCATTAATTTAAGGTTA+AGG | - | chr3.2:1051399-1051418 | MS.gene53935:intron | 20.0% |
| !!! | TTAATTTGGTTTGATATGAT+TGG | - | chr3.2:1051458-1051477 | MS.gene53935:intron | 20.0% |
| !!! | TTGAACCTAATTTATTTTCA+CGG | + | chr3.2:1051960-1051979 | None:intergenic | 20.0% |
| ! | AGGTTAAGGTATAGATAAAA+AGG | - | chr3.2:1051413-1051432 | MS.gene53935:intron | 25.0% |
| ! | AGTATTGCATAAATGATAGA+AGG | - | chr3.2:1051595-1051614 | MS.gene53935:intron | 25.0% |
| ! | ATATAGTCCTTGCATATAAA+TGG | - | chr3.2:1051121-1051140 | MS.gene53935:intron | 25.0% |
| ! | ATTGAATGTAAACACATGAT+TGG | - | chr3.2:1050801-1050820 | MS.gene53935:intron | 25.0% |
| ! | CAATTATTTGATTAAGAGGT+TGG | - | chr3.2:1052643-1052662 | MS.gene53935:CDS | 25.0% |
| ! | GGAATTTGATTAATCTGAAT+CGG | + | chr3.2:1049841-1049860 | None:intergenic | 25.0% |
| ! | TGTTCTCTTCTACTTATTTA+CGG | - | chr3.2:1052848-1052867 | MS.gene53935:CDS | 25.0% |
| !! | ACTTATCTACTCAAAAGTAT+AGG | + | chr3.2:1052890-1052909 | None:intergenic | 25.0% |
| !! | ATTTTCCTATACTCATTTAG+TGG | - | chr3.2:1052134-1052153 | MS.gene53935:intron | 25.0% |
| !! | TCATTTTCTCATATTATTGG+TGG | + | chr3.2:1051024-1051043 | None:intergenic | 25.0% |
| !! | TTTCAATTTGAAGGTGTATT+TGG | + | chr3.2:1050909-1050928 | None:intergenic | 25.0% |
| !! | TTTCATTTTCATTATCGTTG+TGG | + | chr3.2:1049747-1049766 | None:intergenic | 25.0% |
| !! | TTTTCCTTGATTTTATCGTA+TGG | - | chr3.2:1052911-1052930 | MS.gene53935:CDS | 25.0% |
| !!! | CAAATTAAAAGTGTTGTTTC+CGG | + | chr3.2:1050464-1050483 | None:intergenic | 25.0% |
| !!! | CAATTCTAAAATGAATTCCA+AGG | + | chr3.2:1052705-1052724 | None:intergenic | 25.0% |
| !!! | GAATTTTTCAATTCAACGAT+TGG | + | chr3.2:1049772-1049791 | None:intergenic | 25.0% |
| !!! | TAAACTTTAAAAGGTACCAT+AGG | + | chr3.2:1051175-1051194 | None:intergenic | 25.0% |
| !!! | TTTTTAGGGCTTCTTATATT+GGG | - | chr3.2:1050222-1050241 | MS.gene53935:intron | 25.0% |
| AAATAAGGTGTGCCAATTTA+TGG | + | chr3.2:1052165-1052184 | None:intergenic | 30.0% | |
| AACACAACACTTGAAATTGA+AGG | + | chr3.2:1051089-1051108 | None:intergenic | 30.0% | |
| AACAGAACAAAATTGGATGA+AGG | + | chr3.2:1052832-1052851 | None:intergenic | 30.0% | |
| ACAACATTCTTAAGTTTCTG+AGG | - | chr3.2:1053043-1053062 | MS.gene53935:CDS | 30.0% | |
| AGAAACTTAAGAATGTTGTG+AGG | + | chr3.2:1053042-1053061 | None:intergenic | 30.0% | |
| AGAAGAGAACAGAACAAAAT+TGG | + | chr3.2:1052839-1052858 | None:intergenic | 30.0% | |
| AGAATTTGAACTAGAACTAC+TGG | + | chr3.2:1049875-1049894 | None:intergenic | 30.0% | |
| ATAACAGATATACAGTGGAA+TGG | + | chr3.2:1052790-1052809 | None:intergenic | 30.0% | |
| ATCACCATACGATAAAATCA+AGG | + | chr3.2:1052918-1052937 | None:intergenic | 30.0% | |
| ATGTATCACATGTATCACTA+AGG | + | chr3.2:1050735-1050754 | None:intergenic | 30.0% | |
| ATGTGAGGAAGAATAAGAAA+CGG | - | chr3.2:1052541-1052560 | MS.gene53935:intron | 30.0% | |
| CAAGTGTCAAAACTGAATAT+CGG | + | chr3.2:1051906-1051925 | None:intergenic | 30.0% | |
| CTGAAATAACAGATATACAG+TGG | + | chr3.2:1052795-1052814 | None:intergenic | 30.0% | |
| GAAATCAGCTAGTGTAAATA+AGG | + | chr3.2:1052180-1052199 | None:intergenic | 30.0% | |
| GACTACCGTGAAAATAAATT+AGG | - | chr3.2:1051952-1051971 | MS.gene53935:intron | 30.0% | |
| GGGACAATTATTTGATTAAG+AGG | - | chr3.2:1052639-1052658 | MS.gene53935:CDS | 30.0% | |
| GTTGGTTATTTGAGTAGTAT+GGG | - | chr3.2:1052661-1052680 | MS.gene53935:CDS | 30.0% | |
| GTTTACTTGAGTTTATCCTA+TGG | - | chr3.2:1051156-1051175 | MS.gene53935:intron | 30.0% | |
| TAACAGATATACAGTGGAAT+GGG | + | chr3.2:1052789-1052808 | None:intergenic | 30.0% | |
| TGTATCACATGTATCACTAA+GGG | + | chr3.2:1050734-1050753 | None:intergenic | 30.0% | |
| TTGGTTATTTGAGTAGTATG+GGG | - | chr3.2:1052662-1052681 | MS.gene53935:CDS | 30.0% | |
| ! | AAGGGACTGTTATTTGATTA+AGG | - | chr3.2:1052618-1052637 | MS.gene53935:CDS | 30.0% |
| ! | AGGGACTGTTATTTGATTAA+GGG | - | chr3.2:1052619-1052638 | MS.gene53935:CDS | 30.0% |
| ! | GCATTTTGCAGTATCTTAAA+AGG | + | chr3.2:1052105-1052124 | None:intergenic | 30.0% |
| ! | TAAACTGCCATTTATATGCA+AGG | + | chr3.2:1051131-1051150 | None:intergenic | 30.0% |
| !! | ATTGGAAGTGTTGAAACATT+GGG | - | chr3.2:1050146-1050165 | MS.gene53935:intron | 30.0% |
| !! | ATTTGGTTTGATATGATTGG+TGG | - | chr3.2:1051461-1051480 | MS.gene53935:intron | 30.0% |
| !! | TGTTGAAAGTGGTATTGATT+CGG | - | chr3.2:1050065-1050084 | MS.gene53935:intron | 30.0% |
| !!! | AGGCTATTTTTGGCTTATTT+TGG | - | chr3.2:1051222-1051241 | MS.gene53935:intron | 30.0% |
| !!! | GTTTTTAGGGCTTCTTATAT+TGG | - | chr3.2:1050221-1050240 | MS.gene53935:intron | 30.0% |
| AAGAAATCAGTCAGCTATAC+TGG | + | chr3.2:1051256-1051275 | None:intergenic | 35.0% | |
| AATATGGGGAAGAGAGAAAA+TGG | - | chr3.2:1052576-1052595 | MS.gene53935:intron | 35.0% | |
| ACATCATAGACAGTTATGCA+AGG | + | chr3.2:1052331-1052350 | None:intergenic | 35.0% | |
| ACGGAGGACAAATGATAATA+TGG | - | chr3.2:1052560-1052579 | MS.gene53935:intron | 35.0% | |
| ACTGTCTATGATGTCTATAG+TGG | - | chr3.2:1052337-1052356 | MS.gene53935:intron | 35.0% | |
| AGAACTACTGGAAATCGAAT+TGG | + | chr3.2:1049863-1049882 | None:intergenic | 35.0% | |
| ATAACAGAGAAGAGAGAGAA+AGG | - | chr3.2:1052496-1052515 | MS.gene53935:intron | 35.0% | |
| ATAAGCACATATCCCAAATG+AGG | - | chr3.2:1052379-1052398 | MS.gene53935:intron | 35.0% | |
| ATATGGGGAAGAGAGAAAAT+GGG | - | chr3.2:1052577-1052596 | MS.gene53935:intron | 35.0% | |
| CAATGTTTCAACACTTCCAA+TGG | + | chr3.2:1050147-1050166 | None:intergenic | 35.0% | |
| CATCATAGACAGTTATGCAA+GGG | + | chr3.2:1052330-1052349 | None:intergenic | 35.0% | |
| CGGAGGACAAATGATAATAT+GGG | - | chr3.2:1052561-1052580 | MS.gene53935:intron | 35.0% | |
| GAACTACTGGAAATCGAATT+GGG | + | chr3.2:1049862-1049881 | None:intergenic | 35.0% | |
| GACTGATCTTCAGTAAAAGA+AGG | - | chr3.2:1052064-1052083 | MS.gene53935:intron | 35.0% | |
| GATATGTGCTTATGTGGTTT+AGG | + | chr3.2:1052372-1052391 | None:intergenic | 35.0% | |
| GGAGGACAAATGATAATATG+GGG | - | chr3.2:1052562-1052581 | MS.gene53935:intron | 35.0% | |
| GGTGTATTGCAATATGGAAT+TGG | + | chr3.2:1052212-1052231 | None:intergenic | 35.0% | |
| GTCTCTTCTTACTGAATTAC+AGG | + | chr3.2:1051845-1051864 | None:intergenic | 35.0% | |
| GTGATACATGTGATACATAG+CGG | - | chr3.2:1050737-1050756 | MS.gene53935:intron | 35.0% | |
| TAACAGAGAAGAGAGAGAAA+GGG | - | chr3.2:1052497-1052516 | MS.gene53935:intron | 35.0% | |
| TCCAACGAGGAAGATTATTA+GGG | + | chr3.2:1049945-1049964 | None:intergenic | 35.0% | |
| TGACTGTCATAGTAGTTGAT+TGG | - | chr3.2:1051805-1051824 | MS.gene53935:intron | 35.0% | |
| TGGTTATTTGAGTAGTATGG+GGG | - | chr3.2:1052663-1052682 | MS.gene53935:CDS | 35.0% | |
| TTAAAAGGCTCAACTGATCA+TGG | + | chr3.2:1052090-1052109 | None:intergenic | 35.0% | |
| TTCCAACGAGGAAGATTATT+AGG | + | chr3.2:1049946-1049965 | None:intergenic | 35.0% | |
| ! | ACATTGGGTGAATCCTTTTT+CGG | - | chr3.2:1050161-1050180 | MS.gene53935:intron | 35.0% |
| ! | AGAGCAAAGTGTCATCTAAT+CGG | - | chr3.2:1051671-1051690 | MS.gene53935:intron | 35.0% |
| ! | ATTTGGGATATGTGCTTATG+TGG | + | chr3.2:1052378-1052397 | None:intergenic | 35.0% |
| ! | CTTGAAATTGAAGGCGTATT+TGG | + | chr3.2:1051080-1051099 | None:intergenic | 35.0% |
| ! | CTTGTAACAATTTTCGCAGA+AGG | - | chr3.2:1053070-1053089 | MS.gene53935:CDS | 35.0% |
| ! | GGTTGGTTATTTGAGTAGTA+TGG | - | chr3.2:1052660-1052679 | MS.gene53935:CDS | 35.0% |
| ! | TAACCTTGCTCTTGATGATA+AGG | - | chr3.2:1050290-1050309 | MS.gene53935:intron | 35.0% |
| ! | TACACTAGCTGATTTCAATC+TGG | - | chr3.2:1052184-1052203 | MS.gene53935:intron | 35.0% |
| ! | TGGTTTTCAACATGTATCAG+AGG | + | chr3.2:1050889-1050908 | None:intergenic | 35.0% |
| ! | TGTCGGTGTAATTGATGATA+AGG | - | chr3.2:1050023-1050042 | MS.gene53935:intron | 35.0% |
| !! | CATTGGAAGTGTTGAAACAT+TGG | - | chr3.2:1050145-1050164 | MS.gene53935:intron | 35.0% |
| AAGAAATCGAAGCTGGTGAA+TGG | - | chr3.2:1049713-1049732 | MS.gene53935:CDS | 40.0% | |
| AAGGCGTATTTGGTTGTGAA+TGG | + | chr3.2:1051070-1051089 | None:intergenic | 40.0% | |
| AAGTAGATCACCTGTCATCA+GGG | - | chr3.2:1051998-1052017 | MS.gene53935:intron | 40.0% | |
| ACACTTTGCTCTCTGTTTAG+CGG | + | chr3.2:1051663-1051682 | None:intergenic | 40.0% | |
| ACATATCCCAAATGAGGACA+CGG | - | chr3.2:1052385-1052404 | MS.gene53935:intron | 40.0% | |
| ACCCTAATAATCTTCCTCGT+TGG | - | chr3.2:1049941-1049960 | MS.gene53935:intron | 40.0% | |
| AGAAATCGAAGCTGGTGAAT+GGG | - | chr3.2:1049714-1049733 | MS.gene53935:CDS | 40.0% | |
| AGAGTTATAGTAGAAGCAGC+TGG | + | chr3.2:1053179-1053198 | None:intergenic | 40.0% | |
| AGATACTGCAAAATGCACTC+TGG | - | chr3.2:1052109-1052128 | MS.gene53935:intron | 40.0% | |
| ATGACAGGTGATCTACTTCA+GGG | + | chr3.2:1051996-1052015 | None:intergenic | 40.0% | |
| CATATGTGTCAGAATGACAC+CGG | - | chr3.2:1050442-1050461 | MS.gene53935:intron | 40.0% | |
| CATGGCCACTAAATGAGTAT+AGG | + | chr3.2:1052142-1052161 | None:intergenic | 40.0% | |
| CGAGGAACAATAAGAAACAG+AGG | - | chr3.2:1052466-1052485 | MS.gene53935:intron | 40.0% | |
| CTGCTTCTACTATAACTCTG+AGG | - | chr3.2:1053180-1053199 | MS.gene53935:CDS | 40.0% | |
| GAATCAGAATCATTCCAACG+AGG | + | chr3.2:1049958-1049977 | None:intergenic | 40.0% | |
| GAGTGAGTGAAAAGTTACCT+TGG | - | chr3.2:1052685-1052704 | MS.gene53935:CDS | 40.0% | |
| GATGAAGAAGAAATCGAAGC+TGG | - | chr3.2:1049706-1049725 | MS.gene53935:CDS | 40.0% | |
| GATGATGAGGTTGTTGAAAG+TGG | - | chr3.2:1050054-1050073 | MS.gene53935:intron | 40.0% | |
| GTTTATGATGACATGTGCGA+AGG | - | chr3.2:1051202-1051221 | MS.gene53935:intron | 40.0% | |
| TACAGTAGAATGACAGCTGA+GGG | - | chr3.2:1052237-1052256 | MS.gene53935:intron | 40.0% | |
| TAGGGCTTCTTATATTGGGA+AGG | - | chr3.2:1050226-1050245 | MS.gene53935:intron | 40.0% | |
| TCAGCTGTCATTCTACTGTA+GGG | + | chr3.2:1052237-1052256 | None:intergenic | 40.0% | |
| TCGGAGAGGCTTAATATATC+TGG | - | chr3.2:1051690-1051709 | MS.gene53935:intron | 40.0% | |
| TGACCTTATCATCAAGAGCA+AGG | + | chr3.2:1050296-1050315 | None:intergenic | 40.0% | |
| TGAGGAAGAATAAGAAACGG+AGG | - | chr3.2:1052544-1052563 | MS.gene53935:intron | 40.0% | |
| TGTGTTTGGATTGAGGGTTT+AGG | + | chr3.2:1050711-1050730 | None:intergenic | 40.0% | |
| TTAGTGGCCATGCCATAAAT+TGG | - | chr3.2:1052150-1052169 | MS.gene53935:intron | 40.0% | |
| TTTGGATTGAGGGTTTAGGA+GGG | + | chr3.2:1050707-1050726 | None:intergenic | 40.0% | |
| ! | AAAGTGTCATCTAATCGGAG+AGG | - | chr3.2:1051676-1051695 | MS.gene53935:intron | 40.0% |
| ! | AGGTATTTTGCGATGCCAAT+TGG | + | chr3.2:1052032-1052051 | None:intergenic | 40.0% |
| ! | CGGTGTAATTGATGATAAGG+TGG | - | chr3.2:1050026-1050045 | MS.gene53935:intron | 40.0% |
| ! | GATCAGTCACATCGTTTTAC+AGG | + | chr3.2:1052052-1052071 | None:intergenic | 40.0% |
| ! | GGTATTTTGCGATGCCAATT+GGG | + | chr3.2:1052031-1052050 | None:intergenic | 40.0% |
| ! | TAAGGGTGTGTTTGGATTGA+GGG | + | chr3.2:1050717-1050736 | None:intergenic | 40.0% |
| ! | TGAAGTGTTATGGCGTGTTT+GGG | - | chr3.2:1050482-1050501 | MS.gene53935:intron | 40.0% |
| ! | TGTATCACTAAGGGTGTGTT+TGG | + | chr3.2:1050725-1050744 | None:intergenic | 40.0% |
| ! | TTGAAGTGTTATGGCGTGTT+TGG | - | chr3.2:1050481-1050500 | MS.gene53935:intron | 40.0% |
| !! | AAAGGCACTAAGAAATGTGC+TGG | + | chr3.2:1052948-1052967 | None:intergenic | 40.0% |
| !! | ACATGTGCGAAGGCTATTTT+TGG | - | chr3.2:1051212-1051231 | MS.gene53935:intron | 40.0% |
| !! | TAAGGTGGTTGTTGATGATG+AGG | - | chr3.2:1050041-1050060 | MS.gene53935:intron | 40.0% |
| !! | TGAAAGTGGTATTGATTCGG+CGG | - | chr3.2:1050068-1050087 | MS.gene53935:intron | 40.0% |
| AACGCTAACAACGTCGCTAT+CGG | + | chr3.2:1049980-1049999 | None:intergenic | 45.0% | |
| AACGGTGCCTACAGCATTTA+TGG | + | chr3.2:1052274-1052293 | None:intergenic | 45.0% | |
| AGAGAAGAGAGAGAAAGGGA+TGG | - | chr3.2:1052501-1052520 | MS.gene53935:intron | 45.0% | |
| AGGATGAGAAGAGATTGGTG+TGG | - | chr3.2:1050112-1050131 | MS.gene53935:intron | 45.0% | |
| AGGGCAGGTGTATTGCAATA+TGG | + | chr3.2:1052218-1052237 | None:intergenic | 45.0% | |
| AGGTGTGCCAATTTATGGCA+TGG | + | chr3.2:1052160-1052179 | None:intergenic | 45.0% | |
| ATATCCCAAATGAGGACACG+GGG | - | chr3.2:1052387-1052406 | MS.gene53935:intron | 45.0% | |
| ATCAGGGTCAGATTCCCAAT+TGG | - | chr3.2:1052014-1052033 | MS.gene53935:intron | 45.0% | |
| ATGAGAAGAGATTGGTGTGG+TGG | - | chr3.2:1050115-1050134 | MS.gene53935:intron | 45.0% | |
| ATTTGCTCTTGTGGACAGCA+GGG | - | chr3.2:1052761-1052780 | MS.gene53935:CDS | 45.0% | |
| CACAATCCTGTTCACAGACA+AGG | + | chr3.2:1051766-1051785 | None:intergenic | 45.0% | |
| CATATCCCAAATGAGGACAC+GGG | - | chr3.2:1052386-1052405 | MS.gene53935:intron | 45.0% | |
| CCATGTGCCATAAATGCTGT+AGG | - | chr3.2:1052264-1052283 | MS.gene53935:intron | 45.0% | |
| CCTACAGCATTTATGGCACA+TGG | + | chr3.2:1052267-1052286 | None:intergenic | 45.0% | |
| CGGCTGAACATGTCTCAAAA+AGG | + | chr3.2:1052966-1052985 | None:intergenic | 45.0% | |
| CTACAGTAGAATGACAGCTG+AGG | - | chr3.2:1052236-1052255 | MS.gene53935:intron | 45.0% | |
| CTCAGCTGTCATTCTACTGT+AGG | + | chr3.2:1052238-1052257 | None:intergenic | 45.0% | |
| GAAGGAGGATGAGAAGAGAT+TGG | - | chr3.2:1050107-1050126 | MS.gene53935:intron | 45.0% | |
| GAAGTAGATCACCTGTCATC+AGG | - | chr3.2:1051997-1052016 | MS.gene53935:intron | 45.0% | |
| GAGAAGAGAGAGAAAGGGAT+GGG | - | chr3.2:1052502-1052521 | MS.gene53935:intron | 45.0% | |
| GATGACAGGTGATCTACTTC+AGG | + | chr3.2:1051997-1052016 | None:intergenic | 45.0% | |
| GCATACACTCTTCACACTGT+GGG | + | chr3.2:1052447-1052466 | None:intergenic | 45.0% | |
| GTTTGGATTGAGGGTTTAGG+AGG | + | chr3.2:1050708-1050727 | None:intergenic | 45.0% | |
| TAGTATACGAGTCACAGCCA+GGG | - | chr3.2:1051728-1051747 | MS.gene53935:intron | 45.0% | |
| TCAACAAAAGCAGCCGTCAA+CGG | + | chr3.2:1052986-1053005 | None:intergenic | 45.0% | |
| TTAGTATACGAGTCACAGCC+AGG | - | chr3.2:1051727-1051746 | MS.gene53935:intron | 45.0% | |
| TTGGATTGAGGGTTTAGGAG+GGG | + | chr3.2:1050706-1050725 | None:intergenic | 45.0% | |
| TTTGGGTGGAGGGTTTAAGA+GGG | - | chr3.2:1050499-1050518 | MS.gene53935:intron | 45.0% | |
| ! | ATCGAGGTCATGGACTTTTG+TGG | + | chr3.2:1050978-1050997 | None:intergenic | 45.0% |
| ! | CTAAGGGTGTGTTTGGATTG+AGG | + | chr3.2:1050718-1050737 | None:intergenic | 45.0% |
| !! | CAAGGTGCTGAATAAATCCC+TGG | + | chr3.2:1051748-1051767 | None:intergenic | 45.0% |
| !! | CAGAAGGTATCTCAGCTCAA+GGG | - | chr3.2:1053086-1053105 | MS.gene53935:CDS | 45.0% |
| !! | GTGATACATAGCGGACACAT+AGG | - | chr3.2:1050746-1050765 | MS.gene53935:intron | 45.0% |
| !! | TGTAGGAGCATTTGCTCTTG+TGG | - | chr3.2:1052752-1052771 | MS.gene53935:CDS | 45.0% |
| !!! | TTGGGTGAATCCTTTTTCGG+TGG | - | chr3.2:1050164-1050183 | MS.gene53935:intron | 45.0% |
| AGTAGTGAGACGCATTCCTG+TGG | - | chr3.2:1053139-1053158 | MS.gene53935:CDS | 50.0% | |
| AGTGTTATGGCGTGTTTGGG+TGG | - | chr3.2:1050485-1050504 | MS.gene53935:intron | 50.0% | |
| CATTTGCTCTTGTGGACAGC+AGG | - | chr3.2:1052760-1052779 | MS.gene53935:CDS | 50.0% | |
| CGCATACACTCTTCACACTG+TGG | + | chr3.2:1052448-1052467 | None:intergenic | 50.0% | |
| CTGTCATTCTACTGTAGGGC+AGG | + | chr3.2:1052233-1052252 | None:intergenic | 50.0% | |
| GAGACATGTTCAGCCGTTGA+CGG | - | chr3.2:1052970-1052989 | MS.gene53935:CDS | 50.0% | |
| GGGAAGAGAGAAAATGGGAC+GGG | - | chr3.2:1052582-1052601 | MS.gene53935:intron | 50.0% | |
| GGGGAAGAGAGAAAATGGGA+CGG | - | chr3.2:1052581-1052600 | MS.gene53935:intron | 50.0% | |
| GGTTTAAGAGGGGAAGGGAA+GGG | - | chr3.2:1050510-1050529 | MS.gene53935:intron | 50.0% | |
| GTAGAAGCAGCTGGAAGAGA+TGG | + | chr3.2:1053170-1053189 | None:intergenic | 50.0% | |
| GTGAACAGGATTGTGACACG+AGG | - | chr3.2:1051771-1051790 | MS.gene53935:intron | 50.0% | |
| GTGACTATGCATCGAGGTCA+TGG | + | chr3.2:1050988-1051007 | None:intergenic | 50.0% | |
| GTGTCAGTGACTATGCATCG+AGG | + | chr3.2:1050994-1051013 | None:intergenic | 50.0% | |
| GTTGCTAACAACGTCGCTGT+CGG | - | chr3.2:1050006-1050025 | MS.gene53935:intron | 50.0% | |
| GTTTGGGTGGAGGGTTTAAG+AGG | - | chr3.2:1050498-1050517 | MS.gene53935:intron | 50.0% | |
| TCAGCACCTTGTCTGTGAAC+AGG | - | chr3.2:1051757-1051776 | MS.gene53935:intron | 50.0% | |
| TGAGACGCATTCCTGTGGTA+CGG | - | chr3.2:1053144-1053163 | MS.gene53935:CDS | 50.0% | |
| TGGAGGGTTTAAGAGGGGAA+GGG | - | chr3.2:1050505-1050524 | MS.gene53935:intron | 50.0% | |
| TGGATTGAGGGTTTAGGAGG+GGG | + | chr3.2:1050705-1050724 | None:intergenic | 50.0% | |
| TGGGCTGCAGACTTGCAATT+GGG | + | chr3.2:1052422-1052441 | None:intergenic | 50.0% | |
| TTATGGCGTGTTTGGGTGGA+GGG | - | chr3.2:1050489-1050508 | MS.gene53935:intron | 50.0% | |
| TTCGTGTCAGTGTCGTGTCT+TGG | + | chr3.2:1050374-1050393 | None:intergenic | 50.0% | |
| TTGGGTGGAGGGTTTAAGAG+GGG | - | chr3.2:1050500-1050519 | MS.gene53935:intron | 50.0% | |
| ! | AGCAGTCTGGAGTGTATGTG+AGG | - | chr3.2:1052526-1052545 | MS.gene53935:intron | 50.0% |
| ! | CAGTGTGAAGAGTGTATGCG+AGG | - | chr3.2:1052448-1052467 | MS.gene53935:intron | 50.0% |
| ! | CTGCAGCTGCTGCGTTTTTA+GGG | - | chr3.2:1050208-1050227 | MS.gene53935:intron | 50.0% |
| ! | GAAGAGATTGGTGTGGTGGA+AGG | - | chr3.2:1050119-1050138 | MS.gene53935:intron | 50.0% |
| ! | GGCATCGAAACCACCGAAAA+AGG | + | chr3.2:1050177-1050196 | None:intergenic | 50.0% |
| !! | AAGTGGTATTGATTCGGCGG+TGG | - | chr3.2:1050071-1050090 | MS.gene53935:intron | 50.0% |
| !! | GCAGAAGGTATCTCAGCTCA+AGG | - | chr3.2:1053085-1053104 | MS.gene53935:CDS | 50.0% |
| ACTCTTCACACTGTGGGCCT+GGG | + | chr3.2:1052441-1052460 | None:intergenic | 55.0% | |
| AGAGCCCCGTGTCCTCATTT+GGG | + | chr3.2:1052394-1052413 | None:intergenic | 55.0% | |
| ATTGAGGGTTTAGGAGGGGG+AGG | + | chr3.2:1050702-1050721 | None:intergenic | 55.0% | |
| CAATTGCAAGTCTGCAGCCC+AGG | - | chr3.2:1052421-1052440 | MS.gene53935:intron | 55.0% | |
| CTGGGCTGCAGACTTGCAAT+TGG | + | chr3.2:1052423-1052442 | None:intergenic | 55.0% | |
| GCAGCTGCAGCAACAGACAA+AGG | + | chr3.2:1050198-1050217 | None:intergenic | 55.0% | |
| GGGAATCTGACCCTGATGAC+AGG | + | chr3.2:1052011-1052030 | None:intergenic | 55.0% | |
| GGGTTTAAGAGGGGAAGGGA+AGG | - | chr3.2:1050509-1050528 | MS.gene53935:intron | 55.0% | |
| GTGGAGGGTTTAAGAGGGGA+AGG | - | chr3.2:1050504-1050523 | MS.gene53935:intron | 55.0% | |
| GTTATGGCGTGTTTGGGTGG+AGG | - | chr3.2:1050488-1050507 | MS.gene53935:intron | 55.0% | |
| TAAGAGGGGAAGGGAAGGGA+GGG | - | chr3.2:1050514-1050533 | MS.gene53935:intron | 55.0% | |
| TAGAGCCCCGTGTCCTCATT+TGG | + | chr3.2:1052395-1052414 | None:intergenic | 55.0% | |
| TTAAGAGGGGAAGGGAAGGG+AGG | - | chr3.2:1050513-1050532 | MS.gene53935:intron | 55.0% | |
| TTGAGGGTTTAGGAGGGGGA+GGG | + | chr3.2:1050701-1050720 | None:intergenic | 55.0% | |
| ! | ACGGGCAGCAGTTGATGCAA+GGG | - | chr3.2:1052600-1052619 | MS.gene53935:CDS | 55.0% |
| ! | GCTGCAGCTGCTGCGTTTTT+AGG | - | chr3.2:1050207-1050226 | MS.gene53935:intron | 55.0% |
| !! | GGTGTGGTGGAAGGTACCAT+TGG | - | chr3.2:1050128-1050147 | MS.gene53935:intron | 55.0% |
| !! | TATTGATTCGGCGGTGGTGG+AGG | - | chr3.2:1050077-1050096 | MS.gene53935:intron | 55.0% |
| !! | TGGTATTGATTCGGCGGTGG+TGG | - | chr3.2:1050074-1050093 | MS.gene53935:intron | 55.0% |
| AAGAGGGGAAGGGAAGGGAG+GGG | - | chr3.2:1050515-1050534 | MS.gene53935:intron | 60.0% | |
| CACTCTTCACACTGTGGGCC+TGG | + | chr3.2:1052442-1052461 | None:intergenic | 60.0% | |
| GAAAGGGATGGGCAGCAGTC+TGG | - | chr3.2:1052513-1052532 | MS.gene53935:intron | 60.0% | |
| GGAAGAGATGGCCGTACCAC+AGG | + | chr3.2:1053158-1053177 | None:intergenic | 60.0% | |
| ! | GACGGGCAGCAGTTGATGCA+AGG | - | chr3.2:1052599-1052618 | MS.gene53935:intron | 60.0% |
| GGTGGAGGAAGAGGGGAAGG+AGG | - | chr3.2:1050092-1050111 | MS.gene53935:intron | 65.0% | |
| !! | GGTGGTGGAGGAAGAGGGGA+AGG | - | chr3.2:1050089-1050108 | MS.gene53935:intron | 65.0% |
| !! | TCGGCGGTGGTGGAGGAAGA+GGG | - | chr3.2:1050084-1050103 | MS.gene53935:intron | 65.0% |
| !! | TTCGGCGGTGGTGGAGGAAG+AGG | - | chr3.2:1050083-1050102 | MS.gene53935:intron | 65.0% |
| AGGGGAAGGGAAGGGAGGGG+AGG | - | chr3.2:1050518-1050537 | MS.gene53935:intron | 70.0% | |
| GGGGAAGGGAAGGGAGGGGA+GGG | - | chr3.2:1050519-1050538 | MS.gene53935:intron | 70.0% | |
| !! | CGGCGGTGGTGGAGGAAGAG+GGG | - | chr3.2:1050085-1050104 | MS.gene53935:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 1049688 | 1053223 | 1049688 | ID=MS.gene53935 |
| chr3.2 | mRNA | 1049688 | 1053223 | 1049688 | ID=MS.gene53935.t1;Parent=MS.gene53935 |
| chr3.2 | exon | 1052600 | 1053223 | 1052600 | ID=MS.gene53935.t1.exon1;Parent=MS.gene53935.t1 |
| chr3.2 | CDS | 1052600 | 1053223 | 1052600 | ID=cds.MS.gene53935.t1;Parent=MS.gene53935.t1 |
| chr3.2 | exon | 1049688 | 1049822 | 1049688 | ID=MS.gene53935.t1.exon2;Parent=MS.gene53935.t1 |
| chr3.2 | CDS | 1049688 | 1049822 | 1049688 | ID=cds.MS.gene53935.t1;Parent=MS.gene53935.t1 |
| Gene Sequence |
| Protein sequence |
