Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55840.t1 | XP_024628478.1 | 98.3 | 647 | 11 | 0 | 1 | 647 | 68 | 714 | 0.00E+00 | 1175.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55840.t1 | Q498F0 | 31.2 | 349 | 213 | 12 | 199 | 534 | 512 | 846 | 9.0e-31 | 136.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55840.t1 | A0A072U627 | 98.3 | 647 | 11 | 0 | 1 | 647 | 68 | 714 | 0.0e+00 | 1175.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049264 | MS.gene55840 | 0.800933 | 1.14E-48 | -1.69E-46 |
| MS.gene049801 | MS.gene55840 | 0.83192 | 1.27E-55 | -1.69E-46 |
| MS.gene04991 | MS.gene55840 | -0.807455 | 5.01E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene55840 | 0.832586 | 8.69E-56 | -1.69E-46 |
| MS.gene050105 | MS.gene55840 | 0.801546 | 8.56E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene55840 | 0.834491 | 2.91E-56 | -1.69E-46 |
| MS.gene050737 | MS.gene55840 | 0.852898 | 3.41E-61 | -1.69E-46 |
| MS.gene050826 | MS.gene55840 | 0.80065 | 1.30E-48 | -1.69E-46 |
| MS.gene050941 | MS.gene55840 | 0.879792 | 9.33E-70 | -1.69E-46 |
| MS.gene051122 | MS.gene55840 | 0.818408 | 1.99E-52 | -1.69E-46 |
| MS.gene051184 | MS.gene55840 | 0.815612 | 8.46E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene55840 | 0.85205 | 5.95E-61 | -1.69E-46 |
| MS.gene052118 | MS.gene55840 | 0.802496 | 5.46E-49 | -1.69E-46 |
| MS.gene05216 | MS.gene55840 | 0.810353 | 1.20E-50 | -1.69E-46 |
| MS.gene052674 | MS.gene55840 | 0.866411 | 2.91E-65 | -1.69E-46 |
| MS.gene052675 | MS.gene55840 | 0.85936 | 4.36E-63 | -1.69E-46 |
| MS.gene052677 | MS.gene55840 | 0.861003 | 1.39E-63 | -1.69E-46 |
| MS.gene05350 | MS.gene55840 | 0.826333 | 2.87E-54 | -1.69E-46 |
| MS.gene054479 | MS.gene55840 | 0.846633 | 1.92E-59 | -1.69E-46 |
| MS.gene054893 | MS.gene55840 | 0.80142 | 9.08E-49 | -1.69E-46 |
| MS.gene055864 | MS.gene55840 | 0.840247 | 9.76E-58 | -1.69E-46 |
| MS.gene055926 | MS.gene55840 | 0.820299 | 7.38E-53 | -1.69E-46 |
| MS.gene056480 | MS.gene55840 | 0.82419 | 9.23E-54 | -1.69E-46 |
| MS.gene056831 | MS.gene55840 | 0.807622 | 4.62E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene55840 | 0.855167 | 7.56E-62 | -1.69E-46 |
| MS.gene058223 | MS.gene55840 | -0.827342 | 1.65E-54 | -1.69E-46 |
| MS.gene058278 | MS.gene55840 | 0.820059 | 8.38E-53 | -1.69E-46 |
| MS.gene058429 | MS.gene55840 | 0.863709 | 2.05E-64 | -1.69E-46 |
| MS.gene059283 | MS.gene55840 | 0.835315 | 1.80E-56 | -1.69E-46 |
| MS.gene059952 | MS.gene55840 | 0.801175 | 1.02E-48 | -1.69E-46 |
| MS.gene06010 | MS.gene55840 | 0.806183 | 9.31E-50 | -1.69E-46 |
| MS.gene060296 | MS.gene55840 | 0.8109 | 9.16E-51 | -1.69E-46 |
| MS.gene060435 | MS.gene55840 | 0.803643 | 3.16E-49 | -1.69E-46 |
| MS.gene060520 | MS.gene55840 | 0.806945 | 6.43E-50 | -1.69E-46 |
| MS.gene060527 | MS.gene55840 | 0.810916 | 9.08E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene55840 | 0.839562 | 1.47E-57 | -1.69E-46 |
| MS.gene060777 | MS.gene55840 | 0.824331 | 8.55E-54 | -1.69E-46 |
| MS.gene060850 | MS.gene55840 | 0.824249 | 8.94E-54 | -1.69E-46 |
| MS.gene060851 | MS.gene55840 | 0.842585 | 2.36E-58 | -1.69E-46 |
| MS.gene060852 | MS.gene55840 | 0.84071 | 7.38E-58 | -1.69E-46 |
| MS.gene060932 | MS.gene55840 | 0.868675 | 5.47E-66 | -1.69E-46 |
| MS.gene060937 | MS.gene55840 | 0.801308 | 9.57E-49 | -1.69E-46 |
| MS.gene06121 | MS.gene55840 | 0.99703 | 8.29E-236 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55840.t1 | MTR_8g100005 | 98.918 | 647 | 7 | 0 | 1 | 647 | 68 | 714 | 0.0 | 1313 |
| MS.gene55840.t1 | MTR_8g100005 | 97.857 | 420 | 9 | 0 | 1 | 420 | 68 | 487 | 0.0 | 841 |
| MS.gene55840.t1 | MTR_1g007740 | 53.565 | 519 | 229 | 5 | 137 | 645 | 191 | 707 | 0.0 | 543 |
| MS.gene55840.t1 | MTR_3g491920 | 48.940 | 566 | 264 | 9 | 99 | 647 | 145 | 702 | 0.0 | 533 |
| MS.gene55840.t1 | MTR_2g079740 | 36.364 | 660 | 336 | 17 | 65 | 647 | 206 | 858 | 5.24e-126 | 393 |
| MS.gene55840.t1 | MTR_8g092890 | 39.715 | 491 | 238 | 7 | 170 | 647 | 200 | 645 | 3.02e-111 | 348 |
| MS.gene55840.t1 | MTR_3g095780 | 40.787 | 483 | 255 | 7 | 174 | 647 | 168 | 628 | 3.95e-104 | 329 |
| MS.gene55840.t1 | MTR_7g060420 | 38.812 | 505 | 265 | 11 | 70 | 538 | 268 | 764 | 8.09e-96 | 317 |
| MS.gene55840.t1 | MTR_4g119620 | 28.959 | 221 | 141 | 9 | 293 | 506 | 66 | 277 | 1.48e-17 | 84.7 |
| MS.gene55840.t1 | MTR_1g072140 | 38.843 | 121 | 70 | 4 | 298 | 415 | 62 | 181 | 1.54e-17 | 84.3 |
| MS.gene55840.t1 | MTR_5g016370 | 25.217 | 230 | 136 | 8 | 199 | 395 | 346 | 572 | 4.05e-11 | 66.6 |
| MS.gene55840.t1 | MTR_6g004040 | 22.917 | 240 | 159 | 8 | 191 | 405 | 7 | 245 | 6.80e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55840.t1 | AT5G24320 | 51.407 | 533 | 233 | 11 | 126 | 647 | 177 | 694 | 5.72e-170 | 501 |
| MS.gene55840.t1 | AT5G24320 | 51.024 | 537 | 233 | 12 | 126 | 647 | 177 | 698 | 6.91e-168 | 496 |
| MS.gene55840.t1 | AT5G53500 | 47.963 | 540 | 242 | 12 | 120 | 645 | 138 | 652 | 2.82e-161 | 478 |
| MS.gene55840.t1 | AT5G53500 | 47.963 | 540 | 242 | 12 | 120 | 645 | 138 | 652 | 2.82e-161 | 478 |
| MS.gene55840.t1 | AT1G64610 | 49.904 | 521 | 218 | 14 | 137 | 647 | 160 | 647 | 8.27e-159 | 471 |
| MS.gene55840.t1 | AT1G64610 | 49.904 | 521 | 218 | 14 | 137 | 647 | 160 | 647 | 8.27e-159 | 471 |
| MS.gene55840.t1 | AT5G42010 | 49.436 | 532 | 236 | 14 | 135 | 647 | 192 | 709 | 8.29e-154 | 461 |
| MS.gene55840.t1 | AT5G54200 | 37.364 | 645 | 327 | 15 | 65 | 647 | 196 | 825 | 2.67e-124 | 388 |
| MS.gene55840.t1 | AT3G15470 | 36.031 | 655 | 326 | 12 | 69 | 647 | 246 | 883 | 1.93e-121 | 382 |
| MS.gene55840.t1 | AT5G42010 | 53.930 | 369 | 154 | 9 | 137 | 497 | 194 | 554 | 4.55e-121 | 372 |
| MS.gene55840.t1 | AT1G48870 | 39.069 | 494 | 238 | 12 | 159 | 644 | 152 | 590 | 3.59e-96 | 308 |
| MS.gene55840.t1 | AT1G48870 | 39.069 | 494 | 238 | 12 | 159 | 644 | 152 | 590 | 3.59e-96 | 308 |
| MS.gene55840.t1 | AT1G48870 | 39.069 | 494 | 238 | 12 | 159 | 644 | 152 | 590 | 3.59e-96 | 308 |
| MS.gene55840.t1 | AT5G02430 | 38.095 | 504 | 279 | 8 | 70 | 541 | 257 | 759 | 1.66e-89 | 298 |
| MS.gene55840.t1 | AT2G37670 | 37.376 | 503 | 275 | 9 | 70 | 540 | 248 | 742 | 8.35e-87 | 290 |
| MS.gene55840.t1 | AT2G37670 | 37.376 | 503 | 275 | 9 | 70 | 540 | 247 | 741 | 9.38e-87 | 290 |
| MS.gene55840.t1 | AT3G49660 | 25.625 | 320 | 164 | 12 | 194 | 506 | 18 | 270 | 3.56e-18 | 86.7 |
| MS.gene55840.t1 | AT4G02730 | 30.275 | 218 | 135 | 8 | 298 | 507 | 78 | 286 | 8.49e-16 | 79.7 |
| MS.gene55840.t1 | AT2G16405 | 26.250 | 240 | 135 | 10 | 298 | 509 | 209 | 434 | 1.10e-12 | 71.2 |
Find 149 sgRNAs with CRISPR-Local
Find 279 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGGATCACTGGCTTTC+AGG | 0.194770 | 4.3:+4091262 | MS.gene55840:CDS |
| GACATGTATGATAAAGAATT+TGG | 0.204178 | 4.3:+4089123 | MS.gene55840:CDS |
| GAAAGGTTGGTTAAGCAAAT+TGG | 0.204304 | 4.3:+4089342 | MS.gene55840:CDS |
| TCAGTAGAGGGAGATGAGTT+TGG | 0.239805 | 4.3:+4088947 | MS.gene55840:CDS |
| AGAATATGTTGTAGATAAAT+TGG | 0.240063 | 4.3:+4089156 | MS.gene55840:CDS |
| GAACGGGTAAGCCGTAATTT+TGG | 0.244647 | 4.3:-4092714 | None:intergenic |
| ACTTGATACTCTGCGCGTTC+TGG | 0.250935 | 4.3:+4089192 | MS.gene55840:CDS |
| TAGTCTTGATGGAAAATATT+TGG | 0.252616 | 4.3:+4089546 | MS.gene55840:CDS |
| TTCAAAATGAATCAGTTTAC+TGG | 0.257489 | 4.3:+4089670 | MS.gene55840:CDS |
| CAGTGACCCGACCAAATTAT+TGG | 0.261934 | 4.3:+4091402 | MS.gene55840:CDS |
| ACCAATATGCGGAAGGTCTT+TGG | 0.274787 | 4.3:-4089784 | None:intergenic |
| GCAACAAAGACTTTGATTCT+AGG | 0.295537 | 4.3:+4089413 | MS.gene55840:CDS |
| TTTAGATAATCATATGAAAA+TGG | 0.299019 | 4.3:+4091199 | MS.gene55840:intron |
| ACGATGAAGTTTAGTCTTGA+TGG | 0.308276 | 4.3:+4089535 | MS.gene55840:CDS |
| TTCATCAGTGGTTCAATTGA+TGG | 0.314804 | 4.3:+4090283 | MS.gene55840:CDS |
| GGCCATGTTGCAGAAACCTT+TGG | 0.326831 | 4.3:-4092532 | None:intergenic |
| CAATAATTTGGTCGGGTCAC+TGG | 0.327839 | 4.3:-4091401 | None:intergenic |
| GACCTTGCATGGTCTAAATC+AGG | 0.328014 | 4.3:+4089850 | MS.gene55840:CDS |
| ATCAAATGAATTGAACATTC+TGG | 0.330017 | 4.3:+4089624 | MS.gene55840:CDS |
| TGAACATAGTCCGGCTTATT+CGG | 0.332677 | 4.3:-4088994 | None:intergenic |
| TTGATGGAAAGGTGCGCATC+TGG | 0.334930 | 4.3:+4090299 | MS.gene55840:CDS |
| AAGGTTCAAATGTTTGTATC+TGG | 0.353017 | 4.3:+4092296 | MS.gene55840:CDS |
| GGCAGAAGCAACCAATAATT+TGG | 0.358161 | 4.3:-4091413 | None:intergenic |
| ACCAAAGACCTTCCGCATAT+TGG | 0.359459 | 4.3:+4089783 | MS.gene55840:CDS |
| GCCATGTTGCAGAAACCTTT+GGG | 0.371744 | 4.3:-4092531 | None:intergenic |
| TAGTCACAGCTGTATGCTTC+TGG | 0.372614 | 4.3:+4090368 | MS.gene55840:CDS |
| GAAACCTTTGCATGAATTCC+AGG | 0.374086 | 4.3:+4089807 | MS.gene55840:CDS |
| TTCGTCTCTTTACACTGAAC+AGG | 0.381545 | 4.3:+4089483 | MS.gene55840:CDS |
| GCTGTATGCTTCTGGCCTAA+TGG | 0.381687 | 4.3:+4090376 | MS.gene55840:CDS |
| ATAAGAGTGTACCAAAATTA+CGG | 0.388172 | 4.3:+4092703 | MS.gene55840:CDS |
| CTTTGGAAGTATTCCTATCC+TGG | 0.393529 | 4.3:-4092330 | None:intergenic |
| ATAAGGAATCCAACACAATC+TGG | 0.399390 | 4.3:-4089048 | None:intergenic |
| CTTGATACTCTGCGCGTTCT+GGG | 0.416640 | 4.3:+4089193 | MS.gene55840:CDS |
| TACTCTGATTTACATATTGT+AGG | 0.426782 | 4.3:-4092595 | None:intergenic |
| ATCCTGCTGTTACAATTACT+TGG | 0.427810 | 4.3:-4092669 | None:intergenic |
| ATTTATCTTTATCTACATCA+AGG | 0.437689 | 4.3:-4089705 | None:intergenic |
| ACGAAACAGACCTGTCCATT+AGG | 0.440547 | 4.3:-4090391 | None:intergenic |
| ACTCTTCGAAACTAATCAAC+TGG | 0.447238 | 4.3:-4089222 | None:intergenic |
| CCTAAAAGCCTCGTTTGATA+AGG | 0.450704 | 4.3:-4089065 | None:intergenic |
| ACCGTGTTTCAAACACGAAC+GGG | 0.453452 | 4.3:-4092730 | None:intergenic |
| AAAAGAAGACATCGGGGAAA+AGG | 0.457722 | 4.3:+4091246 | MS.gene55840:CDS |
| AGAGGAGACGCTTCTTGACT+CGG | 0.461351 | 4.3:+4092555 | MS.gene55840:CDS |
| TTGATAAGACTGTGCGCCTA+TGG | 0.462409 | 4.3:+4090010 | MS.gene55840:CDS |
| AATGTCTAATTCTCACTTGT+GGG | 0.462495 | 4.3:+4092645 | MS.gene55840:CDS |
| TACCTAGGATATTATAGAAA+CGG | 0.466354 | 4.3:-4090525 | None:intergenic |
| GAGTCAAGAAGCGTCTCCTC+TGG | 0.472846 | 4.3:-4092553 | None:intergenic |
| ACAATCGTGGGTACCATGAC+GGG | 0.475328 | 4.3:+4090496 | MS.gene55840:CDS |
| AATAATTTGGTCGGGTCACT+GGG | 0.476368 | 4.3:-4091400 | None:intergenic |
| AAAAGAAGATGAAGAAAGGT+TGG | 0.476424 | 4.3:+4089329 | MS.gene55840:CDS |
| TCCGCATAAGAAGCGAGTTA+AGG | 0.484492 | 4.3:+4089456 | MS.gene55840:CDS |
| TGTTGTAGATAAATTGGATC+AGG | 0.490135 | 4.3:+4089162 | MS.gene55840:CDS |
| ATGCTTCTGGCCTAATGGAC+AGG | 0.494162 | 4.3:+4090381 | MS.gene55840:CDS |
| TGCCGTTTCTATAATATCCT+AGG | 0.494721 | 4.3:+4090523 | MS.gene55840:CDS |
| GGATGGGTTTAGAGTATGAC+GGG | 0.497339 | 4.3:+4088921 | None:intergenic |
| TCACATGTCTGCATACTCTC+TGG | 0.498360 | 4.3:+4091439 | MS.gene55840:CDS |
| CCTTCAGGTCTGAGAAGTGC+AGG | 0.499062 | 4.3:+4092220 | MS.gene55840:intron |
| CTACAGTTCTGAACATAGTC+CGG | 0.501376 | 4.3:-4089003 | None:intergenic |
| GATTGTTTCTTCATGAGTCG+TGG | 0.503407 | 4.3:+4092490 | MS.gene55840:CDS |
| CGATGTCATCTACAAATTCA+AGG | 0.503602 | 4.3:+4091465 | MS.gene55840:CDS |
| CGGCATTGTTCGTGTGTGGC+AGG | 0.505198 | 4.3:+4089585 | MS.gene55840:CDS |
| CAATATGTAAATCAGAGTAT+AGG | 0.505786 | 4.3:+4092599 | MS.gene55840:CDS |
| CGACTCATGAAGAAACAATC+AGG | 0.505926 | 4.3:-4092487 | None:intergenic |
| AAATGTCATCACTATGCCCC+TGG | 0.507029 | 4.3:-4089825 | None:intergenic |
| ATCCAACACAATCTGGTTTG+AGG | 0.511924 | 4.3:-4089041 | None:intergenic |
| ACAATCTGGTTTGAGGTTGA+CGG | 0.512441 | 4.3:-4089034 | None:intergenic |
| CATGCTTCCTTCACCTCTGA+CGG | 0.513578 | 4.3:+4092250 | MS.gene55840:CDS |
| CTGTGCGCCTATGGCAAGTA+GGG | 0.519362 | 4.3:+4090019 | MS.gene55840:CDS |
| TATGGCGATTGTTGCATTGT+GGG | 0.520828 | 4.3:-4092386 | None:intergenic |
| ATTGTAACAGCAGGATCTGA+TGG | 0.521096 | 4.3:+4092676 | MS.gene55840:CDS |
| TAGTTAAAACAGAGAAGTTG+AGG | 0.521834 | 4.3:+4089728 | MS.gene55840:CDS |
| ACCTTGCATGGTCTAAATCA+GGG | 0.522984 | 4.3:+4089851 | MS.gene55840:CDS |
| GTTCTTGAGAAGTGCTTGCA+AGG | 0.527561 | 4.3:+4092621 | MS.gene55840:CDS |
| GAGTATGCAGACATGTGAAT+CGG | 0.528548 | 4.3:-4091434 | None:intergenic |
| CTCAATGCCACACCAAGGTA+TGG | 0.530710 | 4.3:-4092404 | None:intergenic |
| CACAATCGTGGGTACCATGA+CGG | 0.531514 | 4.3:+4090495 | MS.gene55840:CDS |
| GGAATCACACTGGCCAGGAT+AGG | 0.531889 | 4.3:+4092317 | MS.gene55840:CDS |
| ATGTTTCCCGTCAGAGGTGA+AGG | 0.532807 | 4.3:-4092257 | None:intergenic |
| TTTATCTTTATCTACATCAA+GGG | 0.538107 | 4.3:-4089704 | None:intergenic |
| AAGCAACCAATAATTTGGTC+GGG | 0.539367 | 4.3:-4091408 | None:intergenic |
| TGATGGAAAGGTGCGCATCT+GGG | 0.540440 | 4.3:+4090300 | MS.gene55840:CDS |
| TCCCAAAGGTTTCTGCAACA+TGG | 0.544159 | 4.3:+4092530 | MS.gene55840:CDS |
| CAGTGGTTCAATTGATGGAA+AGG | 0.546314 | 4.3:+4090288 | MS.gene55840:CDS |
| GAGGAGACGCTTCTTGACTC+GGG | 0.548597 | 4.3:+4092556 | MS.gene55840:CDS |
| AGAAACCTTTGGGACTAACT+CGG | 0.549739 | 4.3:-4092521 | None:intergenic |
| TTCTTGCAGGGCACAATCGT+GGG | 0.550141 | 4.3:+4090484 | MS.gene55840:intron |
| ATTCTTGCAGGGCACAATCG+TGG | 0.556688 | 4.3:+4090483 | MS.gene55840:intron |
| TATCTGGAATCACACTGGCC+AGG | 0.556850 | 4.3:+4092312 | MS.gene55840:CDS |
| ATGATAAAGAATTTGGATGA+TGG | 0.558307 | 4.3:+4089130 | MS.gene55840:CDS |
| GAATGTCTAATTCTCACTTG+TGG | 0.558938 | 4.3:+4092644 | MS.gene55840:CDS |
| TTGGCTAGTGGTGGTGAAGA+CGG | 0.559055 | 4.3:+4089565 | MS.gene55840:CDS |
| GGCCAAGTAATTGTAACAGC+AGG | 0.563283 | 4.3:+4092667 | MS.gene55840:CDS |
| ACTGTGCGCCTATGGCAAGT+AGG | 0.564256 | 4.3:+4090018 | MS.gene55840:CDS |
| ATGCTTCCTTCACCTCTGAC+GGG | 0.565698 | 4.3:+4092251 | MS.gene55840:CDS |
| ACATCGGGGAAAAGGATCAC+TGG | 0.566458 | 4.3:+4091254 | MS.gene55840:CDS |
| TCTTTCCGAGTTAGTCCCAA+AGG | 0.567160 | 4.3:+4092516 | MS.gene55840:CDS |
| AACCTCAAACCAGATTGTGT+TGG | 0.569654 | 4.3:+4089039 | MS.gene55840:CDS |
| TCCTTAACTCGCTTCTTATG+CGG | 0.569981 | 4.3:-4089457 | None:intergenic |
| TACCGTGTTTCAAACACGAA+CGG | 0.570159 | 4.3:-4092731 | None:intergenic |
| ATCAACTCTTCTCCGAGTGA+AGG | 0.570866 | 4.3:-4092442 | None:intergenic |
| GAAGCAACCAATAATTTGGT+CGG | 0.571251 | 4.3:-4091409 | None:intergenic |
| ATGCAACAATCGCCATACCT+TGG | 0.572180 | 4.3:+4092392 | MS.gene55840:CDS |
| GAAACGGCAATTGCCCGTCA+TGG | 0.575505 | 4.3:-4090509 | None:intergenic |
| GATGTCATCTACAAATTCAA+GGG | 0.575996 | 4.3:+4091466 | MS.gene55840:CDS |
| CAGCATCTCTCTGCAAATGT+CGG | 0.576515 | 4.3:-4089279 | None:intergenic |
| ATTCGGTCAACTCCACGAGA+TGG | 0.577374 | 4.3:-4088977 | None:intergenic |
| AATATGCGGAAGGTCTTTGG+TGG | 0.577709 | 4.3:-4089781 | None:intergenic |
| TTATCTTTATCTACATCAAG+GGG | 0.580035 | 4.3:-4089703 | None:intergenic |
| AGAAAATCACGATGATGGTA+CGG | 0.580064 | 4.3:+4089093 | MS.gene55840:CDS |
| TTCTTGAGAAGTGCTTGCAA+GGG | 0.580642 | 4.3:+4092622 | MS.gene55840:CDS |
| GACTATGTTCAGAACTGTAG+AGG | 0.583904 | 4.3:+4089006 | MS.gene55840:CDS |
| TTGTTAGAAAATCACGATGA+TGG | 0.584653 | 4.3:+4089088 | MS.gene55840:CDS |
| AAACCTTTGCATGAATTCCA+GGG | 0.585082 | 4.3:+4089808 | MS.gene55840:CDS |
| TGTAGATAAATTGGATCAGG+AGG | 0.585406 | 4.3:+4089165 | MS.gene55840:CDS |
| AACGATATGTTTCCCGTCAG+AGG | 0.585819 | 4.3:-4092263 | None:intergenic |
| GTATGACGGGAATTCAGTAG+AGG | 0.586966 | 4.3:+4088934 | MS.gene55840:CDS |
| ACGCCGTTGTCTCCTTCACT+CGG | 0.587598 | 4.3:+4092430 | MS.gene55840:CDS |
| CCCCTGATTTAGACCATGCA+AGG | 0.588804 | 4.3:-4089852 | None:intergenic |
| TGCTAATCCCTACTTGCCAT+AGG | 0.591922 | 4.3:-4090026 | None:intergenic |
| TGGATGGGTTTAGAGTATGA+CGG | 0.594137 | 4.3:+4088920 | None:intergenic |
| GTGGAGTTGACCGAATAAGC+CGG | 0.605397 | 4.3:+4088984 | MS.gene55840:CDS |
| TGCCCCTGGAATTCATGCAA+AGG | 0.607152 | 4.3:-4089811 | None:intergenic |
| CATATCGTTTCACTTAGTGA+AGG | 0.608284 | 4.3:+4092277 | MS.gene55840:CDS |
| TCGGAGAAGAGTTGATTCAA+AGG | 0.608586 | 4.3:+4092449 | MS.gene55840:CDS |
| TTTGGAGATGATCCATCTCG+TGG | 0.623691 | 4.3:+4088965 | MS.gene55840:CDS |
| TATGACGGGAATTCAGTAGA+GGG | 0.625707 | 4.3:+4088935 | MS.gene55840:CDS |
| GATGGAAAATATTTGGCTAG+TGG | 0.627924 | 4.3:+4089553 | MS.gene55840:CDS |
| CATTGTTCGTGTGTGGCAGG+TGG | 0.630831 | 4.3:+4089588 | MS.gene55840:CDS |
| AACCTTTGCATGAATTCCAG+GGG | 0.635723 | 4.3:+4089809 | MS.gene55840:CDS |
| GTAGATAAATTGGATCAGGA+GGG | 0.639429 | 4.3:+4089166 | MS.gene55840:CDS |
| AGGTTTCACCAATATGCGGA+AGG | 0.644387 | 4.3:-4089791 | None:intergenic |
| ATGTCTAATTCTCACTTGTG+GGG | 0.646372 | 4.3:+4092646 | MS.gene55840:CDS |
| GGAAAATATTTGGCTAGTGG+TGG | 0.647301 | 4.3:+4089556 | MS.gene55840:CDS |
| GAATCAGTTTACTGGTTGTG+TGG | 0.653240 | 4.3:+4089678 | MS.gene55840:CDS |
| CCTTGCATGGTCTAAATCAG+GGG | 0.660042 | 4.3:+4089852 | MS.gene55840:CDS |
| GTATGGCGATTGTTGCATTG+TGG | 0.662763 | 4.3:-4092387 | None:intergenic |
| AAGACGGCATTGTTCGTGTG+TGG | 0.662913 | 4.3:+4089581 | MS.gene55840:CDS |
| GTTGGATTCCTTATCAAACG+AGG | 0.665271 | 4.3:+4089057 | MS.gene55840:CDS |
| GGTTTCTGCAACATGGCCAG+AGG | 0.665832 | 4.3:+4092537 | MS.gene55840:CDS |
| ATATGCGGAAGGTCTTTGGT+GGG | 0.667509 | 4.3:-4089780 | None:intergenic |
| GTTTGTATCTGGAATCACAC+TGG | 0.669043 | 4.3:+4092307 | MS.gene55840:CDS |
| ACTATGTTCAGAACTGTAGA+GGG | 0.676507 | 4.3:+4089007 | MS.gene55840:CDS |
| TAGGCGCACAGTCTTATCAA+CGG | 0.676718 | 4.3:-4090007 | None:intergenic |
| ACAATCGCCATACCTTGGTG+TGG | 0.678529 | 4.3:+4092397 | MS.gene55840:CDS |
| TGTCGGCGAACAAACGACGA+CGG | 0.681002 | 4.3:-4089262 | None:intergenic |
| GCAAAGGTTTCACCAATATG+CGG | 0.689476 | 4.3:-4089795 | None:intergenic |
| CAGGAGTTTAAAGCACACAA+AGG | 0.710407 | 4.3:+4089502 | MS.gene55840:CDS |
| GCGCACAGTCTTATCAACGG+AGG | 0.725288 | 4.3:-4090004 | None:intergenic |
| GTTGACTCAATGCCACACCA+AGG | 0.732343 | 4.3:-4092409 | None:intergenic |
| TCTCCGAGTGAAGGAGACAA+CGG | 0.734432 | 4.3:-4092433 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGAAATATATATTTGA+TGG | - | chr4.3:4089658-4089677 | None:intergenic | 10.0% |
| !! | AAAAAAAAACACACAATATT+AGG | - | chr4.3:4090180-4090199 | None:intergenic | 15.0% |
| !! | AAAAAAAACACACAATATTA+GGG | - | chr4.3:4090179-4090198 | None:intergenic | 15.0% |
| !! | AAGAGTTTCATAAAAATATT+GGG | + | chr4.3:4089239-4089258 | MS.gene55840:CDS | 15.0% |
| !! | ATATAAAATTATTGACAAGT+GGG | + | chr4.3:4091343-4091362 | MS.gene55840:intron | 15.0% |
| !! | ATGAAAAAATTATCATTTAC+GGG | - | chr4.3:4090268-4090287 | None:intergenic | 15.0% |
| !! | CTAAAATAAATGGTATTAAA+TGG | - | chr4.3:4091789-4091808 | None:intergenic | 15.0% |
| !! | GATGAAAAAATTATCATTTA+CGG | - | chr4.3:4090269-4090288 | None:intergenic | 15.0% |
| !! | TATATAAAATTATTGACAAG+TGG | + | chr4.3:4091342-4091361 | MS.gene55840:intron | 15.0% |
| !! | TTTAGATAATCATATGAAAA+TGG | + | chr4.3:4091199-4091218 | MS.gene55840:intron | 15.0% |
| !!! | ACTTGTCAATAATTTTATAT+AGG | - | chr4.3:4091343-4091362 | None:intergenic | 15.0% |
| !!! | CAAATTTTCAAAACAAAAAA+TGG | + | chr4.3:4091120-4091139 | MS.gene55840:intron | 15.0% |
| !! | AGAATATGTTGTAGATAAAT+TGG | + | chr4.3:4089156-4089175 | MS.gene55840:CDS | 20.0% |
| !! | ATTTATCTTTATCTACATCA+AGG | - | chr4.3:4089708-4089727 | None:intergenic | 20.0% |
| !! | GAAGAGTTTCATAAAAATAT+TGG | + | chr4.3:4089238-4089257 | MS.gene55840:CDS | 20.0% |
| !! | GTACAACAAATGAAAATAAT+GGG | - | chr4.3:4092153-4092172 | None:intergenic | 20.0% |
| !! | TACAACAAATGAAAATAATG+GGG | - | chr4.3:4092152-4092171 | None:intergenic | 20.0% |
| !! | TGTACAACAAATGAAAATAA+TGG | - | chr4.3:4092154-4092173 | None:intergenic | 20.0% |
| !! | TTTATCTTTATCTACATCAA+GGG | - | chr4.3:4089707-4089726 | None:intergenic | 20.0% |
| !!! | AATGATAATTTTTTCATCAG+TGG | + | chr4.3:4090271-4090290 | MS.gene55840:CDS | 20.0% |
| !!! | ATTTGATACCATTTTTGAAT+AGG | + | chr4.3:4091815-4091834 | MS.gene55840:intron | 20.0% |
| !!! | CTTGTTTTTATCATAATCAA+GGG | + | chr4.3:4089374-4089393 | MS.gene55840:CDS | 20.0% |
| !!! | TCGAATGATTTTGATAATAT+TGG | + | chr4.3:4090113-4090132 | MS.gene55840:intron | 20.0% |
| !!! | TTCTAGAATATTCTCATATA+AGG | - | chr4.3:4091513-4091532 | None:intergenic | 20.0% |
| !!! | TTGTACAATTATGTTCATTT+TGG | + | chr4.3:4092167-4092186 | MS.gene55840:intron | 20.0% |
| ! | AAATTTAACTCATTCTTGCA+GGG | + | chr4.3:4090472-4090491 | MS.gene55840:intron | 25.0% |
| ! | ACAACAAATGAAAATAATGG+GGG | - | chr4.3:4092151-4092170 | None:intergenic | 25.0% |
| ! | ATCAAATGAATTGAACATTC+TGG | + | chr4.3:4089624-4089643 | MS.gene55840:CDS | 25.0% |
| ! | ATGATAAAGAATTTGGATGA+TGG | + | chr4.3:4089130-4089149 | MS.gene55840:CDS | 25.0% |
| ! | ATGATTATCTAAACATGTGA+AGG | - | chr4.3:4091192-4091211 | None:intergenic | 25.0% |
| ! | ATGTGTATATGTTCAAACAA+TGG | + | chr4.3:4091038-4091057 | MS.gene55840:intron | 25.0% |
| ! | ATTAGGGTGAGAAAAATATA+GGG | - | chr4.3:4090163-4090182 | None:intergenic | 25.0% |
| ! | CAATATGTAAATCAGAGTAT+AGG | + | chr4.3:4092599-4092618 | MS.gene55840:CDS | 25.0% |
| ! | CTCTACAAAATCAACTTATA+AGG | + | chr4.3:4091848-4091867 | MS.gene55840:intron | 25.0% |
| ! | GACATGTATGATAAAGAATT+TGG | + | chr4.3:4089123-4089142 | MS.gene55840:CDS | 25.0% |
| ! | TAATAAACTGCAGAAAAAGT+TGG | - | chr4.3:4091306-4091325 | None:intergenic | 25.0% |
| ! | TACCTAGGATATTATAGAAA+CGG | - | chr4.3:4090528-4090547 | None:intergenic | 25.0% |
| ! | TACTCTGATTTACATATTGT+AGG | - | chr4.3:4092598-4092617 | None:intergenic | 25.0% |
| ! | TATTAGGGTGAGAAAAATAT+AGG | - | chr4.3:4090164-4090183 | None:intergenic | 25.0% |
| ! | TTATCTTTATCTACATCAAG+GGG | - | chr4.3:4089706-4089725 | None:intergenic | 25.0% |
| ! | TTCAAAATGAATCAGTTTAC+TGG | + | chr4.3:4089670-4089689 | MS.gene55840:CDS | 25.0% |
| !! | AGACATAATTTTCTTTGCTT+TGG | - | chr4.3:4092350-4092369 | None:intergenic | 25.0% |
| !! | ATAAGAGTGTACCAAAATTA+CGG | + | chr4.3:4092703-4092722 | MS.gene55840:CDS | 25.0% |
| !! | CAGGAATTTAAAATACACAT+TGG | - | chr4.3:4092062-4092081 | None:intergenic | 25.0% |
| !! | GTTTTCTCTCACAATAATTA+TGG | + | chr4.3:4090060-4090079 | MS.gene55840:CDS | 25.0% |
| !! | TAGTCTTGATGGAAAATATT+TGG | + | chr4.3:4089546-4089565 | MS.gene55840:CDS | 25.0% |
| !!! | GCTTGTTTTTATCATAATCA+AGG | + | chr4.3:4089373-4089392 | MS.gene55840:CDS | 25.0% |
| !!! | TATTTTAAATTCCTGCAATG+AGG | + | chr4.3:4092067-4092086 | MS.gene55840:intron | 25.0% |
| !!! | TGGATCACTGTTTTTTATTT+TGG | + | chr4.3:4091058-4091077 | MS.gene55840:intron | 25.0% |
| AAAAGAAGATGAAGAAAGGT+TGG | + | chr4.3:4089329-4089348 | MS.gene55840:CDS | 30.0% | |
| AAGCTATCATGAAGAGTTTA+TGG | + | chr4.3:4090761-4090780 | MS.gene55840:intron | 30.0% | |
| AAGGTTCAAATGTTTGTATC+TGG | + | chr4.3:4092296-4092315 | MS.gene55840:CDS | 30.0% | |
| AATCACATGTGAAACTGTTT+GGG | - | chr4.3:4090840-4090859 | None:intergenic | 30.0% | |
| AATGTCTAATTCTCACTTGT+GGG | + | chr4.3:4092645-4092664 | MS.gene55840:CDS | 30.0% | |
| ATAGGGAAATACAGTTATTG+TGG | - | chr4.3:4090146-4090165 | None:intergenic | 30.0% | |
| CAAAATCAACTTATAAGGTG+AGG | + | chr4.3:4091853-4091872 | MS.gene55840:intron | 30.0% | |
| CTGCTAAATAACACTTTGTT+CGG | + | chr4.3:4090205-4090224 | MS.gene55840:intron | 30.0% | |
| GAAATTTAACTCATTCTTGC+AGG | + | chr4.3:4090471-4090490 | MS.gene55840:intron | 30.0% | |
| GATGTCATCTACAAATTCAA+GGG | + | chr4.3:4091466-4091485 | MS.gene55840:CDS | 30.0% | |
| GCAAGAATGAGTTAAATTTC+AGG | - | chr4.3:4090471-4090490 | None:intergenic | 30.0% | |
| GCATCTTATAATTTGAGCTT+AGG | + | chr4.3:4091566-4091585 | MS.gene55840:intron | 30.0% | |
| GCTAAAAAGAAGATGAAGAA+AGG | + | chr4.3:4089325-4089344 | MS.gene55840:CDS | 30.0% | |
| GTTTAACTGTAAGAACATTG+TGG | + | chr4.3:4090419-4090438 | MS.gene55840:intron | 30.0% | |
| TAATCACATGTGAAACTGTT+TGG | - | chr4.3:4090841-4090860 | None:intergenic | 30.0% | |
| TAGGGAAATACAGTTATTGT+GGG | - | chr4.3:4090145-4090164 | None:intergenic | 30.0% | |
| TAGTTAAAACAGAGAAGTTG+AGG | + | chr4.3:4089728-4089747 | MS.gene55840:CDS | 30.0% | |
| TCCTCAAAGCACAAAAAAAA+GGG | - | chr4.3:4092121-4092140 | None:intergenic | 30.0% | |
| TCCTTAATTGAGGCAAATTT+GGG | - | chr4.3:4091996-4092015 | None:intergenic | 30.0% | |
| TGTTGTAGATAAATTGGATC+AGG | + | chr4.3:4089162-4089181 | MS.gene55840:CDS | 30.0% | |
| TTAAGCTGTTTATCCAAACA+AGG | - | chr4.3:4090626-4090645 | None:intergenic | 30.0% | |
| TTATATAGGAAGAGAGAGAA+AGG | - | chr4.3:4091329-4091348 | None:intergenic | 30.0% | |
| TTCCTTAATTGAGGCAAATT+TGG | - | chr4.3:4091997-4092016 | None:intergenic | 30.0% | |
| TTCGACACACTTAAAAATCA+AGG | - | chr4.3:4090098-4090117 | None:intergenic | 30.0% | |
| TTGTTAGAAAATCACGATGA+TGG | + | chr4.3:4089088-4089107 | MS.gene55840:CDS | 30.0% | |
| TTTGCAATGCTTATAAAGCT+TGG | - | chr4.3:4091883-4091902 | None:intergenic | 30.0% | |
| ! | AAGCTTTATAAGCATTGCAA+AGG | + | chr4.3:4091882-4091901 | MS.gene55840:intron | 30.0% |
| !!! | TATTATATGCCTGTTTTGAC+TGG | - | chr4.3:4090888-4090907 | None:intergenic | 30.0% |
| AAACCTTTGCATGAATTCCA+GGG | + | chr4.3:4089808-4089827 | MS.gene55840:CDS | 35.0% | |
| AAGCAACCAATAATTTGGTC+GGG | - | chr4.3:4091411-4091430 | None:intergenic | 35.0% | |
| ACAAGGCAAAAAGAAGACAT+CGG | + | chr4.3:4091238-4091257 | MS.gene55840:CDS | 35.0% | |
| ACATGATATTGGACATGCAT+GGG | + | chr4.3:4092090-4092109 | MS.gene55840:intron | 35.0% | |
| ACTATGTTCAGAACTGTAGA+GGG | + | chr4.3:4089007-4089026 | MS.gene55840:CDS | 35.0% | |
| ACTCTTCGAAACTAATCAAC+TGG | - | chr4.3:4089225-4089244 | None:intergenic | 35.0% | |
| AGCTAAATGTGTGTTTACCT+AGG | - | chr4.3:4090543-4090562 | None:intergenic | 35.0% | |
| AGTGCTTATATCTTGCAAAC+CGG | - | chr4.3:4091612-4091631 | None:intergenic | 35.0% | |
| AGTGGAATATAGACCTTGTT+TGG | + | chr4.3:4090610-4090629 | MS.gene55840:intron | 35.0% | |
| ATAAGGAATCCAACACAATC+TGG | - | chr4.3:4089051-4089070 | None:intergenic | 35.0% | |
| ATATTCCACTCATTGTATGC+AGG | - | chr4.3:4090600-4090619 | None:intergenic | 35.0% | |
| ATCCTGCTGTTACAATTACT+TGG | - | chr4.3:4092672-4092691 | None:intergenic | 35.0% | |
| ATGTCTAATTCTCACTTGTG+GGG | + | chr4.3:4092646-4092665 | MS.gene55840:CDS | 35.0% | |
| CATATCGTTTCACTTAGTGA+AGG | + | chr4.3:4092277-4092296 | MS.gene55840:CDS | 35.0% | |
| CGATGTCATCTACAAATTCA+AGG | + | chr4.3:4091465-4091484 | MS.gene55840:CDS | 35.0% | |
| CTTCACTGTGTTGAATGTAA+GGG | - | chr4.3:4091942-4091961 | None:intergenic | 35.0% | |
| GAAGCAACCAATAATTTGGT+CGG | - | chr4.3:4091412-4091431 | None:intergenic | 35.0% | |
| GAATGTCTAATTCTCACTTG+TGG | + | chr4.3:4092644-4092663 | MS.gene55840:CDS | 35.0% | |
| GAGTCAGACCTATTCAAAAA+TGG | - | chr4.3:4091826-4091845 | None:intergenic | 35.0% | |
| GATGGAAAATATTTGGCTAG+TGG | + | chr4.3:4089553-4089572 | MS.gene55840:CDS | 35.0% | |
| GCAACAAAGACTTTGATTCT+AGG | + | chr4.3:4089413-4089432 | MS.gene55840:CDS | 35.0% | |
| GCAAGATATAAGCACTACAA+AGG | + | chr4.3:4091616-4091635 | MS.gene55840:intron | 35.0% | |
| GTAGATAAATTGGATCAGGA+GGG | + | chr4.3:4089166-4089185 | MS.gene55840:CDS | 35.0% | |
| GTCCTCAAAGCACAAAAAAA+AGG | - | chr4.3:4092122-4092141 | None:intergenic | 35.0% | |
| TAATTTGAGCATATAGTGCG+AGG | + | chr4.3:4090967-4090986 | MS.gene55840:intron | 35.0% | |
| TACATAAGCACGCATATGAT+AGG | - | chr4.3:4090671-4090690 | None:intergenic | 35.0% | |
| TCCCAAATTTGCCTCAATTA+AGG | + | chr4.3:4091992-4092011 | MS.gene55840:intron | 35.0% | |
| TCTTCACTGTGTTGAATGTA+AGG | - | chr4.3:4091943-4091962 | None:intergenic | 35.0% | |
| TGTAGATAAATTGGATCAGG+AGG | + | chr4.3:4089165-4089184 | MS.gene55840:CDS | 35.0% | |
| TTCATCAGTGGTTCAATTGA+TGG | + | chr4.3:4090283-4090302 | MS.gene55840:CDS | 35.0% | |
| ! | AGAAAATCACGATGATGGTA+CGG | + | chr4.3:4089093-4089112 | MS.gene55840:CDS | 35.0% |
| ! | ATGACATTTTAGACCTTGCA+TGG | + | chr4.3:4089839-4089858 | MS.gene55840:CDS | 35.0% |
| ! | GAAAGGTTGGTTAAGCAAAT+TGG | + | chr4.3:4089342-4089361 | MS.gene55840:CDS | 35.0% |
| ! | GATGCTGAATTTTCGTTACA+AGG | + | chr4.3:4091221-4091240 | MS.gene55840:CDS | 35.0% |
| ! | TCTAGCACCTTCATTGTTTT+GGG | - | chr4.3:4091683-4091702 | None:intergenic | 35.0% |
| ! | TGCCGTTTCTATAATATCCT+AGG | + | chr4.3:4090523-4090542 | MS.gene55840:CDS | 35.0% |
| !! | ACGATGAAGTTTAGTCTTGA+TGG | + | chr4.3:4089535-4089554 | MS.gene55840:CDS | 35.0% |
| !! | CAAATAAGAGTAGCTTGCTT+CGG | - | chr4.3:4089889-4089908 | None:intergenic | 35.0% |
| !! | CATTTAGCTCTGTAGATGTT+TGG | + | chr4.3:4090554-4090573 | MS.gene55840:intron | 35.0% |
| !!! | CTTCATTGTTTTGGGTGTAT+GGG | - | chr4.3:4091675-4091694 | None:intergenic | 35.0% |
| !!! | TCCCTTTTTTTTGTGCTTTG+AGG | + | chr4.3:4092117-4092136 | MS.gene55840:intron | 35.0% |
| !!! | TTCATTGTTTTGGGTGTATG+GGG | - | chr4.3:4091674-4091693 | None:intergenic | 35.0% |
| AAAAGAAGACATCGGGGAAA+AGG | + | chr4.3:4091246-4091265 | MS.gene55840:CDS | 40.0% | |
| AACCTCAAACCAGATTGTGT+TGG | + | chr4.3:4089039-4089058 | MS.gene55840:CDS | 40.0% | |
| AACCTTTGCATGAATTCCAG+GGG | + | chr4.3:4089809-4089828 | MS.gene55840:CDS | 40.0% | |
| AACTGTAAGAACATTGTGGC+AGG | + | chr4.3:4090423-4090442 | MS.gene55840:intron | 40.0% | |
| AAGAAGAATTAGGCACAGGT+GGG | - | chr4.3:4091541-4091560 | None:intergenic | 40.0% | |
| AAGGCAAAAAGAAGACATCG+GGG | + | chr4.3:4091240-4091259 | MS.gene55840:CDS | 40.0% | |
| AATAATTTGGTCGGGTCACT+GGG | - | chr4.3:4091403-4091422 | None:intergenic | 40.0% | |
| AATGGTATCTAAGCAATCCC+TGG | - | chr4.3:4091771-4091790 | None:intergenic | 40.0% | |
| ACAGAAGAAGAATTAGGCAC+AGG | - | chr4.3:4091545-4091564 | None:intergenic | 40.0% | |
| ACCTTGCATGGTCTAAATCA+GGG | + | chr4.3:4089851-4089870 | MS.gene55840:CDS | 40.0% | |
| ATTCAACACAGTGAAGATGC+TGG | + | chr4.3:4091946-4091965 | MS.gene55840:intron | 40.0% | |
| ATTGTAACAGCAGGATCTGA+TGG | + | chr4.3:4092676-4092695 | MS.gene55840:CDS | 40.0% | |
| CAAGGCAAAAAGAAGACATC+GGG | + | chr4.3:4091239-4091258 | MS.gene55840:CDS | 40.0% | |
| CAATATCATGTCCTCATTGC+AGG | - | chr4.3:4092081-4092100 | None:intergenic | 40.0% | |
| CACACATGTTACTGCATCAA+AGG | - | chr4.3:4090236-4090255 | None:intergenic | 40.0% | |
| CAGTGGTTCAATTGATGGAA+AGG | + | chr4.3:4090288-4090307 | MS.gene55840:CDS | 40.0% | |
| CCATACACCCAAAACAATGA+AGG | + | chr4.3:4091673-4091692 | MS.gene55840:intron | 40.0% | |
| CCTAAAAGCCTCGTTTGATA+AGG | - | chr4.3:4089068-4089087 | None:intergenic | 40.0% | |
| CCTGAAGGCAAAAAAAGAAG+AGG | - | chr4.3:4092208-4092227 | None:intergenic | 40.0% | |
| CGACTCATGAAGAAACAATC+AGG | - | chr4.3:4092490-4092509 | None:intergenic | 40.0% | |
| CTAGTTTAACCCGTTAAAGC+CGG | + | chr4.3:4091590-4091609 | MS.gene55840:intron | 40.0% | |
| CTGCAATGAGGACATGATAT+TGG | + | chr4.3:4092079-4092098 | MS.gene55840:intron | 40.0% | |
| GAAACCTTTGCATGAATTCC+AGG | + | chr4.3:4089807-4089826 | MS.gene55840:CDS | 40.0% | |
| GACATGATATTGGACATGCA+TGG | + | chr4.3:4092089-4092108 | MS.gene55840:intron | 40.0% | |
| GACTATGTTCAGAACTGTAG+AGG | + | chr4.3:4089006-4089025 | MS.gene55840:CDS | 40.0% | |
| GAGTATGCAGACATGTGAAT+CGG | - | chr4.3:4091437-4091456 | None:intergenic | 40.0% | |
| GATGCCACAGAAGAAGAATT+AGG | - | chr4.3:4091551-4091570 | None:intergenic | 40.0% | |
| GCAAAGGTTTCACCAATATG+CGG | - | chr4.3:4089798-4089817 | None:intergenic | 40.0% | |
| GGAAAATATTTGGCTAGTGG+TGG | + | chr4.3:4089556-4089575 | MS.gene55840:CDS | 40.0% | |
| GGCAGAAGCAACCAATAATT+TGG | - | chr4.3:4091416-4091435 | None:intergenic | 40.0% | |
| GTCGTATCTCTAAGTGATGT+GGG | + | chr4.3:4091904-4091923 | MS.gene55840:intron | 40.0% | |
| GTGTAGTGTGTGTGTTAGAA+AGG | - | chr4.3:4091005-4091024 | None:intergenic | 40.0% | |
| GTTGGATTCCTTATCAAACG+AGG | + | chr4.3:4089057-4089076 | MS.gene55840:CDS | 40.0% | |
| TATGGCGATTGTTGCATTGT+GGG | - | chr4.3:4092389-4092408 | None:intergenic | 40.0% | |
| TCCTTAACTCGCTTCTTATG+CGG | - | chr4.3:4089460-4089479 | None:intergenic | 40.0% | |
| TGAACATAGTCCGGCTTATT+CGG | - | chr4.3:4088997-4089016 | None:intergenic | 40.0% | |
| TGCAGTAGCTTCCTTAATTG+AGG | - | chr4.3:4092006-4092025 | None:intergenic | 40.0% | |
| TGTGCCTAATTCTTCTTCTG+TGG | + | chr4.3:4091544-4091563 | MS.gene55840:intron | 40.0% | |
| TGTGTTGAATGTAAGGGAGT+GGG | - | chr4.3:4091936-4091955 | None:intergenic | 40.0% | |
| TTCGTCTCTTTACACTGAAC+AGG | + | chr4.3:4089483-4089502 | MS.gene55840:CDS | 40.0% | |
| TTGGAACACATCAGATATGC+AGG | - | chr4.3:4092043-4092062 | None:intergenic | 40.0% | |
| ! | ACAATCTGGTTTGAGGTTGA+CGG | - | chr4.3:4089037-4089056 | None:intergenic | 40.0% |
| ! | ATCCAACACAATCTGGTTTG+AGG | - | chr4.3:4089044-4089063 | None:intergenic | 40.0% |
| ! | ATCTTGCAAACCGGCTTTAA+CGG | - | chr4.3:4091603-4091622 | None:intergenic | 40.0% |
| ! | CAGGAGTTTAAAGCACACAA+AGG | + | chr4.3:4089502-4089521 | MS.gene55840:CDS | 40.0% |
| ! | CCTTATCAAACGAGGCTTTT+AGG | + | chr4.3:4089065-4089084 | MS.gene55840:CDS | 40.0% |
| ! | CTCTAGCACCTTCATTGTTT+TGG | - | chr4.3:4091684-4091703 | None:intergenic | 40.0% |
| ! | GAATCAGTTTACTGGTTGTG+TGG | + | chr4.3:4089678-4089697 | MS.gene55840:CDS | 40.0% |
| ! | GATTGTTTCTTCATGAGTCG+TGG | + | chr4.3:4092490-4092509 | MS.gene55840:CDS | 40.0% |
| ! | GTTTGTATCTGGAATCACAC+TGG | + | chr4.3:4092307-4092326 | MS.gene55840:CDS | 40.0% |
| ! | TATGACGGGAATTCAGTAGA+GGG | + | chr4.3:4088935-4088954 | MS.gene55840:CDS | 40.0% |
| ! | TCGGAGAAGAGTTGATTCAA+AGG | + | chr4.3:4092449-4092468 | MS.gene55840:CDS | 40.0% |
| !! | AGAAACCTTTGGGACTAACT+CGG | - | chr4.3:4092524-4092543 | None:intergenic | 40.0% |
| !! | CAAAACAATGAAGGTGCTAG+AGG | + | chr4.3:4091682-4091701 | MS.gene55840:intron | 40.0% |
| !! | CTACAGTTCTGAACATAGTC+CGG | - | chr4.3:4089006-4089025 | None:intergenic | 40.0% |
| !! | CTTTGGAAGTATTCCTATCC+TGG | - | chr4.3:4092333-4092352 | None:intergenic | 40.0% |
| !! | TTCTTGAGAAGTGCTTGCAA+GGG | + | chr4.3:4092622-4092641 | MS.gene55840:CDS | 40.0% |
| !!! | CCTCTTCTTTTTTTGCCTTC+AGG | + | chr4.3:4092205-4092224 | MS.gene55840:intron | 40.0% |
| !!! | CCTTCATTGTTTTGGGTGTA+TGG | - | chr4.3:4091676-4091695 | None:intergenic | 40.0% |
| !!! | CTGTTTTGACTGGCTTACAT+GGG | - | chr4.3:4090878-4090897 | None:intergenic | 40.0% |
| !!! | TCATTGTTTTGGGTGTATGG+GGG | - | chr4.3:4091673-4091692 | None:intergenic | 40.0% |
| AAATGTCATCACTATGCCCC+TGG | - | chr4.3:4089828-4089847 | None:intergenic | 45.0% | |
| AACGATATGTTTCCCGTCAG+AGG | - | chr4.3:4092266-4092285 | None:intergenic | 45.0% | |
| AATATGCGGAAGGTCTTTGG+TGG | - | chr4.3:4089784-4089803 | None:intergenic | 45.0% | |
| ACACACACTACACAACTGAG+TGG | + | chr4.3:4091012-4091031 | MS.gene55840:intron | 45.0% | |
| ACCAAAGACCTTCCGCATAT+TGG | + | chr4.3:4089783-4089802 | MS.gene55840:CDS | 45.0% | |
| ACCAATATGCGGAAGGTCTT+TGG | - | chr4.3:4089787-4089806 | None:intergenic | 45.0% | |
| ACGAAACAGACCTGTCCATT+AGG | - | chr4.3:4090394-4090413 | None:intergenic | 45.0% | |
| AGGTTTCACCAATATGCGGA+AGG | - | chr4.3:4089794-4089813 | None:intergenic | 45.0% | |
| ATATGCGGAAGGTCTTTGGT+GGG | - | chr4.3:4089783-4089802 | None:intergenic | 45.0% | |
| ATCAACTCTTCTCCGAGTGA+AGG | - | chr4.3:4092445-4092464 | None:intergenic | 45.0% | |
| ATGCAACAATCGCCATACCT+TGG | + | chr4.3:4092392-4092411 | MS.gene55840:CDS | 45.0% | |
| CAATAATTTGGTCGGGTCAC+TGG | - | chr4.3:4091404-4091423 | None:intergenic | 45.0% | |
| CAGCATCTCTCTGCAAATGT+CGG | - | chr4.3:4089282-4089301 | None:intergenic | 45.0% | |
| CAGTGACCCGACCAAATTAT+TGG | + | chr4.3:4091402-4091421 | MS.gene55840:CDS | 45.0% | |
| CCATGTAAGCCAGTCAAAAC+AGG | + | chr4.3:4090876-4090895 | MS.gene55840:intron | 45.0% | |
| CCTTGCATGGTCTAAATCAG+GGG | + | chr4.3:4089852-4089871 | MS.gene55840:CDS | 45.0% | |
| CGAATTTGCCGCAATTACAG+CGG | + | chr4.3:4091722-4091741 | MS.gene55840:intron | 45.0% | |
| CGCTGTAATTGCGGCAAATT+CGG | - | chr4.3:4091724-4091743 | None:intergenic | 45.0% | |
| CTGTGTTGAATGTAAGGGAG+TGG | - | chr4.3:4091937-4091956 | None:intergenic | 45.0% | |
| GAAGAAGAATTAGGCACAGG+TGG | - | chr4.3:4091542-4091561 | None:intergenic | 45.0% | |
| GACCTTGCATGGTCTAAATC+AGG | + | chr4.3:4089850-4089869 | MS.gene55840:CDS | 45.0% | |
| GCACTACAAAGGTCATGTCT+AGG | + | chr4.3:4091627-4091646 | MS.gene55840:intron | 45.0% | |
| GCCATGTTGCAGAAACCTTT+GGG | - | chr4.3:4092534-4092553 | None:intergenic | 45.0% | |
| GCTGTAATTGCGGCAAATTC+GGG | - | chr4.3:4091723-4091742 | None:intergenic | 45.0% | |
| GGCCAAGTAATTGTAACAGC+AGG | + | chr4.3:4092667-4092686 | MS.gene55840:CDS | 45.0% | |
| GGTCGTATCTCTAAGTGATG+TGG | + | chr4.3:4091903-4091922 | MS.gene55840:intron | 45.0% | |
| GTATGGCGATTGTTGCATTG+TGG | - | chr4.3:4092390-4092409 | None:intergenic | 45.0% | |
| TAGTCACAGCTGTATGCTTC+TGG | + | chr4.3:4090368-4090387 | MS.gene55840:CDS | 45.0% | |
| TCACATGTCTGCATACTCTC+TGG | + | chr4.3:4091439-4091458 | MS.gene55840:CDS | 45.0% | |
| TCAGTAGAGGGAGATGAGTT+TGG | + | chr4.3:4088947-4088966 | MS.gene55840:CDS | 45.0% | |
| TCCCAAAGGTTTCTGCAACA+TGG | + | chr4.3:4092530-4092549 | MS.gene55840:CDS | 45.0% | |
| TCCGCATAAGAAGCGAGTTA+AGG | + | chr4.3:4089456-4089475 | MS.gene55840:CDS | 45.0% | |
| TCTTTCCGAGTTAGTCCCAA+AGG | + | chr4.3:4092516-4092535 | MS.gene55840:CDS | 45.0% | |
| TGAAGCCTGCATACAATGAG+TGG | + | chr4.3:4090592-4090611 | MS.gene55840:intron | 45.0% | |
| TGCTAATCCCTACTTGCCAT+AGG | - | chr4.3:4090029-4090048 | None:intergenic | 45.0% | |
| TTGATAAGACTGTGCGCCTA+TGG | + | chr4.3:4090010-4090029 | MS.gene55840:CDS | 45.0% | |
| TTTGGAGATGATCCATCTCG+TGG | + | chr4.3:4088965-4088984 | MS.gene55840:CDS | 45.0% | |
| ! | AGGAAGCTACTGCAGTTTTG+CGG | + | chr4.3:4092012-4092031 | MS.gene55840:intron | 45.0% |
| ! | GAACGGGTAAGCCGTAATTT+TGG | - | chr4.3:4092717-4092736 | None:intergenic | 45.0% |
| ! | GTATGACGGGAATTCAGTAG+AGG | + | chr4.3:4088934-4088953 | MS.gene55840:CDS | 45.0% |
| ! | TAGGCGCACAGTCTTATCAA+CGG | - | chr4.3:4090010-4090029 | None:intergenic | 45.0% |
| ! | TCTTGCAAACCGGCTTTAAC+GGG | - | chr4.3:4091602-4091621 | None:intergenic | 45.0% |
| !! | CGGCTTTAACGGGTTAAACT+AGG | - | chr4.3:4091592-4091611 | None:intergenic | 45.0% |
| !! | GAAAAGGATCACTGGCTTTC+AGG | + | chr4.3:4091262-4091281 | MS.gene55840:CDS | 45.0% |
| !! | GTTCTTGAGAAGTGCTTGCA+AGG | + | chr4.3:4092621-4092640 | MS.gene55840:CDS | 45.0% |
| !!! | CATTGTTTTGGGTGTATGGG+GGG | - | chr4.3:4091672-4091691 | None:intergenic | 45.0% |
| !!! | CCTGTTTTGACTGGCTTACA+TGG | - | chr4.3:4090879-4090898 | None:intergenic | 45.0% |
| !!! | AAATTATATTCTAAAATAAA+TGG | - | chr4.3:4091799-4091818 | None:intergenic | 5.0% |
| AAGACGGCATTGTTCGTGTG+TGG | + | chr4.3:4089581-4089600 | MS.gene55840:CDS | 50.0% | |
| AAGGTCATGTCTAGGCGATG+TGG | + | chr4.3:4091635-4091654 | MS.gene55840:intron | 50.0% | |
| ACAATCGCCATACCTTGGTG+TGG | + | chr4.3:4092397-4092416 | MS.gene55840:CDS | 50.0% | |
| ACAATCGTGGGTACCATGAC+GGG | + | chr4.3:4090496-4090515 | MS.gene55840:CDS | 50.0% | |
| ACATCGGGGAAAAGGATCAC+TGG | + | chr4.3:4091254-4091273 | MS.gene55840:CDS | 50.0% | |
| ACTCCTAGCCGCTGTAATTG+CGG | - | chr4.3:4091733-4091752 | None:intergenic | 50.0% | |
| ACTTGATACTCTGCGCGTTC+TGG | + | chr4.3:4089192-4089211 | MS.gene55840:CDS | 50.0% | |
| AGAGGAGACGCTTCTTGACT+CGG | + | chr4.3:4092555-4092574 | MS.gene55840:CDS | 50.0% | |
| AGGTCATGTCTAGGCGATGT+GGG | + | chr4.3:4091636-4091655 | MS.gene55840:intron | 50.0% | |
| AGTGGTCAGCAATCAAGTCC+AGG | + | chr4.3:4091750-4091769 | MS.gene55840:intron | 50.0% | |
| ATGCTTCCTTCACCTCTGAC+GGG | + | chr4.3:4092251-4092270 | MS.gene55840:CDS | 50.0% | |
| ATGTTTCCCGTCAGAGGTGA+AGG | - | chr4.3:4092260-4092279 | None:intergenic | 50.0% | |
| ATTCGGTCAACTCCACGAGA+TGG | - | chr4.3:4088980-4088999 | None:intergenic | 50.0% | |
| ATTCTTGCAGGGCACAATCG+TGG | + | chr4.3:4090483-4090502 | MS.gene55840:intron | 50.0% | |
| CAACACAGTGAAGATGCTGG+AGG | + | chr4.3:4091949-4091968 | MS.gene55840:intron | 50.0% | |
| CACAATCGTGGGTACCATGA+CGG | + | chr4.3:4090495-4090514 | MS.gene55840:CDS | 50.0% | |
| CATGCTTCCTTCACCTCTGA+CGG | + | chr4.3:4092250-4092269 | MS.gene55840:CDS | 50.0% | |
| CCCCTGATTTAGACCATGCA+AGG | - | chr4.3:4089855-4089874 | None:intergenic | 50.0% | |
| CTCAATGCCACACCAAGGTA+TGG | - | chr4.3:4092407-4092426 | None:intergenic | 50.0% | |
| CTTGATACTCTGCGCGTTCT+GGG | + | chr4.3:4089193-4089212 | MS.gene55840:CDS | 50.0% | |
| GCTGTATGCTTCTGGCCTAA+TGG | + | chr4.3:4090376-4090395 | MS.gene55840:CDS | 50.0% | |
| GGCCATGTTGCAGAAACCTT+TGG | - | chr4.3:4092535-4092554 | None:intergenic | 50.0% | |
| GTGGAGTTGACCGAATAAGC+CGG | + | chr4.3:4088984-4089003 | MS.gene55840:CDS | 50.0% | |
| GTGGTCAGCAATCAAGTCCA+GGG | + | chr4.3:4091751-4091770 | MS.gene55840:intron | 50.0% | |
| TCTCCGAGTGAAGGAGACAA+CGG | - | chr4.3:4092436-4092455 | None:intergenic | 50.0% | |
| TGCCCCTGGAATTCATGCAA+AGG | - | chr4.3:4089814-4089833 | None:intergenic | 50.0% | |
| TTCTTGCAGGGCACAATCGT+GGG | + | chr4.3:4090484-4090503 | MS.gene55840:intron | 50.0% | |
| ! | ATGCTTCTGGCCTAATGGAC+AGG | + | chr4.3:4090381-4090400 | MS.gene55840:CDS | 50.0% |
| ! | GTTGACTCAATGCCACACCA+AGG | - | chr4.3:4092412-4092431 | None:intergenic | 50.0% |
| ! | TATCTGGAATCACACTGGCC+AGG | + | chr4.3:4092312-4092331 | MS.gene55840:CDS | 50.0% |
| ! | TGATGGAAAGGTGCGCATCT+GGG | + | chr4.3:4090300-4090319 | MS.gene55840:CDS | 50.0% |
| ! | TTGATGGAAAGGTGCGCATC+TGG | + | chr4.3:4090299-4090318 | MS.gene55840:CDS | 50.0% |
| ! | TTGGCTAGTGGTGGTGAAGA+CGG | + | chr4.3:4089565-4089584 | MS.gene55840:CDS | 50.0% |
| !! | AGGATCACTGGCTTTCAGGT+CGG | + | chr4.3:4091266-4091285 | MS.gene55840:intron | 50.0% |
| ACGCCGTTGTCTCCTTCACT+CGG | + | chr4.3:4092430-4092449 | MS.gene55840:CDS | 55.0% | |
| ACTGTGCGCCTATGGCAAGT+AGG | + | chr4.3:4090018-4090037 | MS.gene55840:CDS | 55.0% | |
| CATTGTTCGTGTGTGGCAGG+TGG | + | chr4.3:4089588-4089607 | MS.gene55840:CDS | 55.0% | |
| CCTGCACTTCTCAGACCTGA+AGG | - | chr4.3:4092223-4092242 | None:intergenic | 55.0% | |
| CTGTGCGCCTATGGCAAGTA+GGG | + | chr4.3:4090019-4090038 | MS.gene55840:CDS | 55.0% | |
| GAAACGGCAATTGCCCGTCA+TGG | - | chr4.3:4090512-4090531 | None:intergenic | 55.0% | |
| GAGGAGACGCTTCTTGACTC+GGG | + | chr4.3:4092556-4092575 | MS.gene55840:CDS | 55.0% | |
| GCAATTACAGCGGCTAGGAG+TGG | + | chr4.3:4091732-4091751 | MS.gene55840:intron | 55.0% | |
| GGAATCACACTGGCCAGGAT+AGG | + | chr4.3:4092317-4092336 | MS.gene55840:CDS | 55.0% | |
| GGTTTCTGCAACATGGCCAG+AGG | + | chr4.3:4092537-4092556 | MS.gene55840:CDS | 55.0% | |
| TGTCGGCGAACAAACGACGA+CGG | - | chr4.3:4089265-4089284 | None:intergenic | 55.0% | |
| TTGCCGCAATTACAGCGGCT+AGG | + | chr4.3:4091727-4091746 | MS.gene55840:intron | 55.0% | |
| ! | CCTTCAGGTCTGAGAAGTGC+AGG | + | chr4.3:4092220-4092239 | MS.gene55840:intron | 55.0% |
| ! | GCGCACAGTCTTATCAACGG+AGG | - | chr4.3:4090007-4090026 | None:intergenic | 55.0% |
| !! | GAGTCAAGAAGCGTCTCCTC+TGG | - | chr4.3:4092556-4092575 | None:intergenic | 55.0% |
| !! | TGTTTTGGGTGTATGGGGGG+TGG | - | chr4.3:4091669-4091688 | None:intergenic | 55.0% |
| CGGCATTGTTCGTGTGTGGC+AGG | + | chr4.3:4089585-4089604 | MS.gene55840:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 4088923 | 4092744 | 4088923 | ID=MS.gene55840 |
| chr4.3 | mRNA | 4088923 | 4092744 | 4088923 | ID=MS.gene55840.t1;Parent=MS.gene55840 |
| chr4.3 | exon | 4088923 | 4089873 | 4088923 | ID=MS.gene55840.t1.exon1;Parent=MS.gene55840.t1 |
| chr4.3 | CDS | 4088923 | 4089873 | 4088923 | ID=cds.MS.gene55840.t1;Parent=MS.gene55840.t1 |
| chr4.3 | exon | 4089991 | 4090081 | 4089991 | ID=MS.gene55840.t1.exon2;Parent=MS.gene55840.t1 |
| chr4.3 | CDS | 4089991 | 4090081 | 4089991 | ID=cds.MS.gene55840.t1;Parent=MS.gene55840.t1 |
| chr4.3 | exon | 4090245 | 4090402 | 4090245 | ID=MS.gene55840.t1.exon3;Parent=MS.gene55840.t1 |
| chr4.3 | CDS | 4090245 | 4090402 | 4090245 | ID=cds.MS.gene55840.t1;Parent=MS.gene55840.t1 |
| chr4.3 | exon | 4090493 | 4090544 | 4090493 | ID=MS.gene55840.t1.exon4;Parent=MS.gene55840.t1 |
| chr4.3 | CDS | 4090493 | 4090544 | 4090493 | ID=cds.MS.gene55840.t1;Parent=MS.gene55840.t1 |
| chr4.3 | exon | 4091204 | 4091283 | 4091204 | ID=MS.gene55840.t1.exon5;Parent=MS.gene55840.t1 |
| chr4.3 | CDS | 4091204 | 4091283 | 4091204 | ID=cds.MS.gene55840.t1;Parent=MS.gene55840.t1 |
| chr4.3 | exon | 4091394 | 4091487 | 4091394 | ID=MS.gene55840.t1.exon6;Parent=MS.gene55840.t1 |
| chr4.3 | CDS | 4091394 | 4091487 | 4091394 | ID=cds.MS.gene55840.t1;Parent=MS.gene55840.t1 |
| chr4.3 | exon | 4092227 | 4092744 | 4092227 | ID=MS.gene55840.t1.exon7;Parent=MS.gene55840.t1 |
| chr4.3 | CDS | 4092227 | 4092744 | 4092227 | ID=cds.MS.gene55840.t1;Parent=MS.gene55840.t1 |
| Gene Sequence |
| Protein sequence |
