AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene47479

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47479.t1 MTR_4g086600 99.031 413 4 0 1 413 42 454 0.0 854
MS.gene47479.t1 MTR_1g020080 55.637 408 147 6 1 407 36 410 3.12e-148 427
MS.gene47479.t1 MTR_3g101370 53.623 414 138 8 1 407 42 408 4.59e-144 417
MS.gene47479.t1 MTR_4g131970 52.895 380 119 7 36 403 57 388 2.84e-131 384
MS.gene47479.t1 MTR_2g022950 58.228 316 113 4 60 374 45 342 1.11e-126 372
MS.gene47479.t1 MTR_2g097960 53.295 349 142 6 64 398 6 347 7.99e-123 363
MS.gene47479.t1 MTR_1g020080 53.667 300 106 5 1 300 36 302 3.44e-99 298
MS.gene47479.t1 MTR_3g101370 50.667 300 96 7 1 295 42 294 2.99e-93 283
MS.gene47479.t1 MTR_2g022950 60.000 210 79 2 60 268 45 250 2.04e-85 261
MS.gene47479.t1 MTR_2g022950 63.590 195 66 2 60 253 45 235 1.35e-84 260
MS.gene47479.t1 MTR_3g109090 32.450 302 177 9 74 366 43 326 6.03e-38 142
MS.gene47479.t1 MTR_3g109090 32.450 302 177 9 74 366 59 342 8.46e-38 142
MS.gene47479.t1 MTR_4g124940 30.976 297 187 8 74 366 45 327 2.93e-36 137
MS.gene47479.t1 MTR_8g022050 31.229 301 188 9 71 366 58 344 1.44e-34 133
MS.gene47479.t1 MTR_7g102730 27.119 295 157 9 76 358 11 259 3.70e-26 111
MS.gene47479.t1 MTR_7g102730 28.571 287 166 10 74 350 97 354 3.20e-22 99.4
MS.gene47479.t1 MTR_4g085540 27.541 305 184 9 77 372 124 400 3.14e-25 108
MS.gene47479.t1 MTR_4g085540 27.465 284 160 10 76 353 35 278 3.39e-21 96.3
MS.gene47479.t1 MTR_4g085540 26.500 200 114 6 73 254 211 395 4.50e-13 71.2
MS.gene47479.t1 MTR_1g019150 25.962 312 181 9 77 372 122 399 1.08e-20 94.7
MS.gene47479.t1 MTR_1g019150 26.502 283 164 8 76 353 33 276 5.51e-20 92.8
MS.gene47479.t1 MTR_1g019150 29.703 202 128 6 62 254 198 394 1.46e-15 79.0
MS.gene47479.t1 MTR_1g097440 26.797 306 175 10 76 374 31 294 4.55e-20 92.8
MS.gene47479.t1 MTR_1g097440 25.952 289 182 10 77 358 120 383 1.79e-19 91.3
MS.gene47479.t1 MTR_1g097440 28.495 186 121 6 77 254 211 392 8.39e-13 70.5
MS.gene47479.t1 MTR_3g065190 29.670 182 117 3 76 257 26 196 8.11e-20 90.9
MS.gene47479.t1 MTR_3g102040 27.083 288 164 9 70 350 17 265 1.02e-19 91.7
MS.gene47479.t1 MTR_3g102040 24.756 307 190 10 77 372 114 390 7.38e-17 83.2
MS.gene47479.t1 MTR_3g102040 27.363 201 137 4 60 254 188 385 2.60e-13 72.0
MS.gene47479.t1 MTR_4g104470 32.275 189 119 4 71 256 118 300 2.26e-19 88.2
MS.gene47479.t1 MTR_1g061870 23.958 288 175 7 76 358 16 264 5.67e-19 89.4
MS.gene47479.t1 MTR_1g061870 26.481 287 168 10 77 353 105 358 7.39e-17 82.8
MS.gene47479.t1 MTR_3g075500 33.333 195 118 5 69 258 103 290 5.96e-19 87.0
MS.gene47479.t1 MTR_6g040190 25.168 298 174 8 73 365 23 276 6.85e-19 89.4
MS.gene47479.t1 MTR_6g040190 27.053 207 136 5 79 276 207 407 8.21e-11 64.3
MS.gene47479.t1 MTR_1g056520 28.962 183 124 3 75 254 108 287 6.59e-18 84.3
MS.gene47479.t1 MTR_3g075500 33.908 174 103 5 69 237 103 269 1.44e-16 79.7
MS.gene47479.t1 MTR_7g106440 26.442 208 137 4 62 259 96 297 2.77e-16 79.7
MS.gene47479.t1 MTR_1g045510 29.474 190 125 5 67 255 104 285 1.82e-15 76.6
MS.gene47479.t1 MTR_3g055990 28.713 202 118 7 73 261 4 192 1.10e-13 72.8
MS.gene47479.t1 MTR_3g055990 28.713 202 118 7 73 261 4 192 1.10e-13 72.8
MS.gene47479.t1 MTR_1g080150 40.789 76 44 1 172 247 131 205 2.29e-13 69.7
MS.gene47479.t1 MTR_1g064230 28.571 196 123 3 77 256 86 280 4.82e-13 69.3
MS.gene47479.t1 MTR_5g097580 28.788 198 115 7 77 261 8 192 2.26e-12 68.9
MS.gene47479.t1 MTR_5g097580 28.788 198 115 7 77 261 8 192 3.03e-12 68.6
MS.gene47479.t1 MTR_5g017280 25.507 345 205 10 86 393 15 344 3.47e-12 68.2
MS.gene47479.t1 MTR_6g004810 22.549 204 145 5 58 259 26 218 5.68e-12 67.4
MS.gene47479.t1 MTR_5g017280 25.507 345 205 10 86 393 15 344 6.39e-12 67.0
MS.gene47479.t1 MTR_7g118120 18.584 339 218 7 46 369 66 361 7.19e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene47479.t1 AT3G19130 63.636 385 104 8 2 375 43 402 2.42e-164 469
MS.gene47479.t1 AT1G49600 66.366 333 96 6 72 403 116 433 2.91e-154 443
MS.gene47479.t1 AT1G49600 68.475 295 83 2 72 366 116 400 1.84e-146 424
MS.gene47479.t1 AT1G49600 68.475 295 83 2 72 366 116 400 1.84e-146 424
MS.gene47479.t1 AT1G47490 56.522 391 137 9 30 407 48 418 2.03e-143 416
MS.gene47479.t1 AT1G47500 59.167 360 124 7 51 407 81 420 3.71e-139 405
MS.gene47479.t1 AT1G11650 54.985 331 122 6 72 400 59 364 6.14e-121 357
MS.gene47479.t1 AT5G19350 49.176 364 153 5 72 412 21 375 1.76e-118 352
MS.gene47479.t1 AT5G19350 49.315 365 155 5 72 412 21 379 4.82e-118 350
MS.gene47479.t1 AT5G54900 50.882 340 147 3 58 396 43 363 8.84e-116 343
MS.gene47479.t1 AT4G27000 56.436 303 110 4 73 374 78 359 1.03e-113 339
MS.gene47479.t1 AT1G11650 56.506 269 94 5 72 338 59 306 1.74e-103 309
MS.gene47479.t1 AT1G47490 53.929 280 98 7 30 297 48 308 2.43e-92 281
MS.gene47479.t1 AT1G47500 57.258 248 85 5 51 296 81 309 2.74e-87 268
MS.gene47479.t1 AT1G54080 31.856 361 200 12 11 366 26 345 4.21e-43 156
MS.gene47479.t1 AT1G54080 31.507 365 200 13 11 366 26 349 2.08e-41 152
MS.gene47479.t1 AT3G14100 33.887 301 180 9 71 366 55 341 3.09e-41 151
MS.gene47479.t1 AT1G17370 33.887 301 180 9 71 366 50 336 2.97e-40 148
MS.gene47479.t1 AT1G17370 34.219 301 176 10 71 366 50 333 5.47e-40 147
MS.gene47479.t1 AT4G34110 30.132 302 180 10 77 372 126 402 5.30e-25 107
MS.gene47479.t1 AT4G34110 26.071 280 163 8 76 350 37 277 2.96e-21 96.7
MS.gene47479.t1 AT2G23350 28.239 301 177 11 74 364 133 404 7.31e-25 107
MS.gene47479.t1 AT2G23350 25.874 286 160 10 74 350 45 287 3.70e-16 80.9
MS.gene47479.t1 AT2G23350 28.365 208 126 7 61 254 209 407 7.00e-15 77.0
MS.gene47479.t1 AT2G36660 25.000 288 170 7 76 358 25 271 9.88e-24 103
MS.gene47479.t1 AT2G36660 23.297 279 183 7 77 350 114 366 3.24e-14 75.1
MS.gene47479.t1 AT1G49760 26.246 301 193 7 77 372 135 411 2.73e-22 99.8
MS.gene47479.t1 AT1G49760 27.402 281 158 7 76 350 46 286 8.17e-20 92.4
MS.gene47479.t1 AT1G49760 26.246 301 193 7 77 372 135 411 2.73e-22 99.8
MS.gene47479.t1 AT1G49760 27.402 281 158 7 76 350 46 286 8.17e-20 92.4
MS.gene47479.t1 AT1G71770 25.763 295 188 9 77 364 148 418 4.89e-22 99.0
MS.gene47479.t1 AT1G71770 24.653 288 174 7 76 358 60 309 2.67e-19 90.9
MS.gene47479.t1 AT1G71770 25.763 295 188 9 77 364 148 418 4.89e-22 99.0
MS.gene47479.t1 AT1G71770 24.653 288 174 7 76 358 60 309 2.67e-19 90.9
MS.gene47479.t1 AT1G34140 25.676 296 185 8 77 365 33 300 9.61e-22 96.7
MS.gene47479.t1 AT1G34140 28.108 185 123 5 77 254 121 302 9.71e-13 69.7
MS.gene47479.t1 AT1G22760 25.000 372 181 12 76 363 50 407 2.24e-20 94.0
MS.gene47479.t1 AT1G22760 25.000 208 143 5 55 254 209 411 1.18e-12 70.1
MS.gene47479.t1 AT5G50250 32.778 180 115 3 71 250 110 283 8.57e-19 86.7
MS.gene47479.t1 AT4G24770 32.105 190 119 4 71 256 146 329 5.31e-18 84.7
MS.gene47479.t1 AT4G24770 32.105 190 119 4 71 256 146 329 5.31e-18 84.7
MS.gene47479.t1 AT2G18510 27.473 182 121 3 76 257 26 196 3.62e-17 82.8
MS.gene47479.t1 AT3G52380 27.919 197 131 4 65 254 107 299 8.75e-17 81.3
MS.gene47479.t1 AT3G16380 25.000 288 174 8 76 358 22 272 1.48e-16 82.0
MS.gene47479.t1 AT3G16380 25.430 291 179 10 77 358 114 375 2.88e-16 81.3
MS.gene47479.t1 AT3G13224 28.125 192 128 5 75 265 10 192 1.71e-16 80.9
MS.gene47479.t1 AT3G13224 28.042 189 126 5 77 264 21 200 4.02e-16 79.7
MS.gene47479.t1 AT1G60000 29.730 185 122 5 71 254 80 257 1.94e-14 73.2
MS.gene47479.t1 AT4G26650 26.906 223 126 9 64 258 4 217 2.00e-14 75.1
MS.gene47479.t1 AT4G26650 26.108 203 124 7 163 353 4 192 4.52e-11 64.7
MS.gene47479.t1 AT4G26650 27.027 222 125 9 65 258 2 214 2.31e-14 75.1
MS.gene47479.t1 AT4G26650 26.263 198 120 7 168 353 6 189 9.66e-11 63.9
MS.gene47479.t1 AT3G04500 41.558 77 44 1 171 247 135 210 1.29e-13 70.9
MS.gene47479.t1 AT2G37220 28.000 200 121 4 77 256 93 289 1.09e-12 68.6
MS.gene47479.t1 AT2G37220 29.064 203 121 5 170 361 88 278 7.59e-12 66.2
MS.gene47479.t1 AT2G33410 29.032 155 103 3 77 225 8 161 1.75e-12 68.9
MS.gene47479.t1 AT4G13850 40.741 81 47 1 175 255 37 116 1.96e-12 64.7
MS.gene47479.t1 AT5G55550 26.633 199 116 7 73 254 4 189 3.08e-12 68.6
MS.gene47479.t1 AT5G55550 26.633 199 116 7 73 254 4 189 3.08e-12 68.6
MS.gene47479.t1 AT5G55550 26.633 199 116 7 73 254 4 189 3.08e-12 68.6
MS.gene47479.t1 AT5G55550 26.633 199 116 7 73 254 4 189 3.08e-12 68.6
MS.gene47479.t1 AT5G55550 26.633 199 116 7 73 254 4 189 3.08e-12 68.6
MS.gene47479.t1 AT1G07360 37.255 102 60 2 285 385 220 318 3.42e-12 68.6
MS.gene47479.t1 AT5G55550 26.633 199 116 7 73 254 4 189 3.57e-12 68.2
MS.gene47479.t1 AT5G55550 26.633 199 116 7 73 254 4 189 3.57e-12 68.2
MS.gene47479.t1 AT5G55550 26.633 199 116 7 73 254 4 189 3.57e-12 68.2
MS.gene47479.t1 AT5G55550 26.633 199 116 7 73 254 4 189 3.57e-12 68.2
MS.gene47479.t1 AT3G13224 27.778 162 108 5 77 238 21 173 4.15e-12 65.9
MS.gene47479.t1 AT4G13850 41.772 79 45 1 175 253 37 114 4.91e-12 63.9
MS.gene47479.t1 AT4G13850 41.772 79 45 1 175 253 37 114 5.97e-12 63.9
MS.gene47479.t1 AT3G07810 27.000 200 118 7 77 261 8 194 6.62e-12 67.4
MS.gene47479.t1 AT4G13850 41.772 79 45 1 175 253 37 114 6.63e-12 63.9
MS.gene47479.t1 AT3G07810 27.000 200 118 7 77 261 8 194 7.23e-12 67.4
MS.gene47479.t1 AT5G47620 27.174 184 120 5 77 253 8 184 1.37e-11 66.2
MS.gene47479.t1 AT5G47620 27.174 184 120 5 77 253 8 184 1.37e-11 66.2
MS.gene47479.t1 AT5G47620 27.174 184 120 5 77 253 8 184 1.37e-11 66.2
MS.gene47479.t1 AT2G29580 34.314 102 66 1 285 385 220 321 3.16e-11 65.5
MS.gene47479.t1 AT5G40490 25.967 181 117 4 77 254 44 210 3.45e-11 65.1
MS.gene47479.t1 AT1G58470 28.492 179 114 7 175 346 8 179 6.08e-11 63.9
MS.gene47479.t1 AT1G58470 28.492 179 114 7 175 346 8 179 6.08e-11 63.9
MS.gene47479.t1 AT1G17640 29.167 168 110 3 88 255 80 238 8.76e-11 63.5
MS.gene47479.t1 AT1G17640 29.167 168 110 3 88 255 80 238 8.76e-11 63.5
MS.gene47479.t1 AT1G17640 29.167 168 110 3 88 255 80 238 8.76e-11 63.5

Find 108 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATGCTGAGGAAGCAATTC+AGG 0.256444 4.3:-26235496 MS.gene47479:CDS
CGAAACGCCTGATCGGTATT+TGG 0.263962 4.3:+26237514 None:intergenic
ATCAGGCGTTTCGTCTGAAT+TGG 0.276433 4.3:-26237504 MS.gene47479:CDS
ACTGGTCAATCGGAGGGATA+TGG 0.328591 4.3:-26237604 MS.gene47479:CDS
GGATATGGTGGCCATGGATA+TGG 0.328731 4.3:-26234915 MS.gene47479:CDS
AGCAGACAGTGCGTCTTTCT+TGG 0.329108 4.3:-26235449 MS.gene47479:CDS
AAACTCACATGCTTATTTCC+TGG 0.336224 4.3:+26235417 None:intergenic
CATAACTGCTTTGCTCATAC+TGG 0.338799 4.3:-26238425 MS.gene47479:CDS
GCAGACAGTGCGTCTTTCTT+GGG 0.339350 4.3:-26235448 MS.gene47479:CDS
GGTTATGGAGGTCATGGATA+TGG 0.355121 4.3:-26234930 MS.gene47479:CDS
CTCTGTATTTGTGGGAGACT+TGG 0.355245 4.3:-26237419 MS.gene47479:CDS
CCCTTCAGATTGGGAACCTT+GGG 0.361796 4.3:+26236076 None:intergenic
CAACCTGCTGCTGCAGTTCA+AGG 0.372082 4.3:-26234849 MS.gene47479:CDS
ATCTGATCTCTCTGTATTTG+TGG 0.372937 4.3:-26237428 MS.gene47479:CDS
AGGAATGACTCTAATGGTTA+TGG 0.376637 4.3:-26234945 MS.gene47479:CDS
CAGATCGTCCTGATCTCTTC+AGG 0.381114 4.3:+26238488 None:intergenic
TCTGATCTCTCTGTATTTGT+GGG 0.395306 4.3:-26237427 MS.gene47479:CDS
GGCTTGGTGACCTTCATCAT+TGG 0.396406 4.3:-26238466 MS.gene47479:CDS
TCAGGCGTTTCGTCTGAATT+GGG 0.404528 4.3:-26237503 MS.gene47479:CDS
TATCTGTTGCAGATATTTGT+TGG 0.405468 4.3:-26235969 MS.gene47479:intron
CATAGCATCAGTAACATCTA+TGG 0.413758 4.3:+26237396 None:intergenic
ATATGCTGCTAGACAAAATC+AGG 0.422308 4.3:-26234883 MS.gene47479:CDS
CCCCTTCAGATTGGGAACCT+TGG 0.423023 4.3:+26236075 None:intergenic
GGATTGAATGGAACAGTGAT+TGG 0.427017 4.3:-26235474 MS.gene47479:CDS
ACCTTGGGCCACAGCACCAT+TGG 0.430193 4.3:+26236091 None:intergenic
AGCTGGCGCCTGAAGAGATC+AGG 0.435334 4.3:-26238496 MS.gene47479:CDS
GTCATACGTAATAAGCAAAC+TGG 0.435726 4.3:-26237622 MS.gene47479:CDS
GTTAGAATCCCCTTCAGATT+GGG 0.438640 4.3:+26236067 None:intergenic
GCAGCATCAGCAGAAGCAGC+TGG 0.446100 4.3:-26238513 MS.gene47479:CDS
CTTTCTTGGGGTCGCAGTCC+AGG 0.447144 4.3:-26235435 MS.gene47479:CDS
GGCTTATGTGCAGGTTGTAT+CGG 0.450307 4.3:-26237650 MS.gene47479:intron
GTGAAAATCCCAGTCGGTAA+AGG 0.454342 4.3:-26235876 MS.gene47479:CDS
TCTAATACTGGTCGTTCAAA+AGG 0.454872 4.3:-26237313 MS.gene47479:CDS
CTGAAGAGATCAGGACGATC+TGG 0.457665 4.3:-26238487 MS.gene47479:CDS
TGTTAGAATCCCCTTCAGAT+TGG 0.468873 4.3:+26236066 None:intergenic
ACATTCAGCGCTGCTGGTGG+TGG 0.474235 4.3:-26237478 MS.gene47479:CDS
TTCAGCGCTGCTGGTGGTGG+TGG 0.480349 4.3:-26237475 MS.gene47479:CDS
GAAGCAATTCAGGGATTGAA+TGG 0.482531 4.3:-26235486 MS.gene47479:CDS
TGGGCTACATTCAGCGCTGC+TGG 0.483566 4.3:-26237484 MS.gene47479:CDS
GCCCCTTGAACTGCAGCAGC+AGG 0.483606 4.3:+26234846 None:intergenic
ACCTGCTGCTGCAGTTCAAG+GGG 0.488826 4.3:-26234847 MS.gene47479:CDS
AACCTGCTGCTGCAGTTCAA+GGG 0.491545 4.3:-26234848 MS.gene47479:CDS
ATGGCGTTTATTGTTCTAGC+AGG 0.496066 4.3:-26237231 MS.gene47479:CDS
TAATAAGCAAACTGGTCAAT+CGG 0.501480 4.3:-26237614 MS.gene47479:CDS
AAAGTCTTGCAGAACTTCAA+TGG 0.502491 4.3:-26237547 MS.gene47479:CDS
GTAGTGTTGGCTGGTGGCGG+TGG 0.503654 4.3:-26236119 MS.gene47479:CDS
TCTTAAACTAGCTGTAGTGT+TGG 0.504172 4.3:-26236132 MS.gene47479:intron
AAACTAGCTGTAGTGTTGGC+TGG 0.505517 4.3:-26236128 MS.gene47479:intron
TCTAATGGTTATGGAGGTCA+TGG 0.506688 4.3:-26234936 MS.gene47479:CDS
GTTGTCATTGACTCTAATAC+TGG 0.511139 4.3:-26237325 MS.gene47479:CDS
TAATGATGAGGATGAACATA+AGG 0.511533 4.3:+26238623 None:intergenic
GAGATCAGGACGATCTGGCT+TGG 0.515806 4.3:-26238482 MS.gene47479:CDS
TCCAATGGTGCTGTGGCCCA+AGG 0.516661 4.3:-26236092 MS.gene47479:CDS
AAACCACATCCTTTACCGAC+TGG 0.519643 4.3:+26235867 None:intergenic
TATGATGCCAAATACCGATC+AGG 0.523250 4.3:-26237521 MS.gene47479:CDS
ACTGGTCGTTCAAAAGGCTA+TGG 0.525221 4.3:-26237307 MS.gene47479:CDS
GCAAGTGTCGCCGCCGCCAT+CGG 0.526333 4.3:-26238576 MS.gene47479:CDS
AACCACATCCTTTACCGACT+GGG 0.528514 4.3:+26235868 None:intergenic
TGGTGACCTTCATCATTGGA+TGG 0.528713 4.3:-26238462 MS.gene47479:CDS
TTGCTTATTACGTATGACCT+TGG 0.529532 4.3:+26237627 None:intergenic
CTGTTGCAGATATTTGTTGG+AGG 0.534128 4.3:-26235966 MS.gene47479:intron
GGTCATGGATATGGTGGCCA+TGG 0.539115 4.3:-26234921 MS.gene47479:CDS
ATCCATTACTTCCATATCCA+TGG 0.539208 4.3:+26234904 None:intergenic
CAGTGGAGGAATGACTCTAA+TGG 0.541519 4.3:-26234951 MS.gene47479:CDS
TCTCATCCATCCAATGATGA+AGG 0.546643 4.3:+26238456 None:intergenic
ATCCCAGTCGGTAAAGGATG+TGG 0.548381 4.3:-26235870 MS.gene47479:CDS
CCTTGCGAAGAATATTGTTG+TGG 0.552246 4.3:+26237163 None:intergenic
GGCCATGGATATGGAAGTAA+TGG 0.553720 4.3:-26234906 MS.gene47479:CDS
GCTGTAGTGTTGGCTGGTGG+CGG 0.557579 4.3:-26236122 MS.gene47479:CDS
GCCCAAGGTTCCCAATCTGA+AGG 0.557760 4.3:-26236077 MS.gene47479:CDS
CCACAACAATATTCTTCGCA+AGG 0.559021 4.3:-26237163 MS.gene47479:intron
AATGCTGAGGAAGCAATTCA+GGG 0.562076 4.3:-26235495 MS.gene47479:CDS
ATTCAGACGAAACGCCTGAT+CGG 0.563201 4.3:+26237507 None:intergenic
ATCATAGCCATAGCAGTAGC+TGG 0.566838 4.3:+26238683 None:intergenic
CTGCTTTGCTCATACTGGAG+AGG 0.568397 4.3:-26238420 MS.gene47479:intron
GCTGATACTGATGCTGCTGA+TGG 0.570788 4.3:+26238534 None:intergenic
CCATCGGCACATAGTCATCA+TGG 0.571186 4.3:-26238560 MS.gene47479:CDS
TGACTATGTGCCGATGGCGG+CGG 0.573960 4.3:+26238566 None:intergenic
CTGCTGGTGGTGGTGGCGAG+AGG 0.574050 4.3:-26237468 MS.gene47479:CDS
GGTGGCGGTGGACACTCCAA+TGG 0.577143 4.3:-26236107 MS.gene47479:CDS
AGAGCAATGACTGAAATGAA+TGG 0.587516 4.3:-26237250 MS.gene47479:CDS
CAGTTCAAGGGGCTTCCTAA+CGG 0.591153 4.3:-26234836 None:intergenic
GACACTTGCTGTTGATGAGG+TGG 0.591335 4.3:+26238590 None:intergenic
CCCAAGGTTCCCAATCTGAA+GGG 0.591408 4.3:-26236076 MS.gene47479:CDS
GCAGTATCCAGCTACTGCTA+TGG 0.591918 4.3:-26238690 MS.gene47479:CDS
CGAGTTCTACACGCGAGCAA+TGG 0.593845 4.3:-26237575 MS.gene47479:CDS
AAGCAAACTGGTCAATCGGA+GGG 0.598971 4.3:-26237610 MS.gene47479:CDS
CAGACAGTGCGTCTTTCTTG+GGG 0.601300 4.3:-26235447 MS.gene47479:CDS
TGGACACTCCAATGGTGCTG+TGG 0.602089 4.3:-26236099 MS.gene47479:CDS
TGTGCAGGTTGTATCGGCCA+AGG 0.610498 4.3:-26237644 MS.gene47479:intron
GGTTTGGTGATGAAAGTGAA+AGG 0.613030 4.3:-26237276 MS.gene47479:CDS
TAAGCAAACTGGTCAATCGG+AGG 0.614770 4.3:-26237611 MS.gene47479:CDS
CCATGATGACTATGTGCCGA+TGG 0.617953 4.3:+26238560 None:intergenic
ATCTCTGTGAAAATCCCAGT+CGG 0.624783 4.3:-26235882 MS.gene47479:CDS
AATGACTCTAATGGTTATGG+AGG 0.625005 4.3:-26234942 MS.gene47479:CDS
TCTAGCAGGCCTATGCGAGT+AGG 0.628642 4.3:-26237217 MS.gene47479:CDS
GCTACATTCAGCGCTGCTGG+TGG 0.629809 4.3:-26237481 MS.gene47479:CDS
TATGGAGGTCATGGATATGG+TGG 0.629902 4.3:-26234927 MS.gene47479:CDS
CCAAGGTTCCCAATCTGAAG+GGG 0.630101 4.3:-26236075 MS.gene47479:CDS
GGCGACACTTGCTGTTGATG+AGG 0.635801 4.3:+26238587 None:intergenic
GTTGCAACACCTACTCGCAT+AGG 0.642755 4.3:+26237208 None:intergenic
GGCTGCTGCTGATAATGATG+AGG 0.650096 4.3:+26238611 None:intergenic
ATGTTACAGAAAGAATGCTG+AGG 0.670854 4.3:-26235508 MS.gene47479:intron
TGATGACTATGTGCCGATGG+CGG 0.675956 4.3:+26238563 None:intergenic
ACATAAGGCATATAATGCTG+AGG 0.677746 4.3:+26238638 None:intergenic
CTAGCTGTAGTGTTGGCTGG+TGG 0.692590 4.3:-26236125 MS.gene47479:intron
TGACTCTGACATTAGTGACG+AGG 0.696799 4.3:-26235940 MS.gene47479:CDS
TCGGCACATAGTCATCATGG+CGG 0.758987 4.3:-26238557 MS.gene47479:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GGAAATTTTATAAAATAATT+TGG + chr4.3:26238362-26238381 None:intergenic 10.0%
!! AAAGTATAACTATCTTATAT+GGG + chr4.3:26235586-26235605 None:intergenic 15.0%
!! AAAGTTAAAACATTTAATCA+AGG + chr4.3:26235431-26235450 None:intergenic 15.0%
!!! AAAAGTATAACTATCTTATA+TGG + chr4.3:26235587-26235606 None:intergenic 15.0%
!!! AAATTTTCATTATAACTGAA+AGG - chr4.3:26236456-26236475 MS.gene47479:intron 15.0%
!!! ATATAAGATAGTTATACTTT+TGG - chr4.3:26235586-26235605 MS.gene47479:intron 15.0%
!!! TTTTATTTGAGATTGATTTA+AGG - chr4.3:26235369-26235388 MS.gene47479:intron 15.0%
!! AAAAATAAGACGATACATAT+TGG + chr4.3:26237965-26237984 None:intergenic 20.0%
!! AACATTCAATAAATAGATTG+AGG + chr4.3:26237179-26237198 None:intergenic 20.0%
!! AATATCCTACAATACATTAT+TGG + chr4.3:26235751-26235770 None:intergenic 20.0%
!! ACAAAGAATTAAATTAGAGA+TGG + chr4.3:26238559-26238578 None:intergenic 20.0%
!! ACGACAATAAAAAAAAAGTT+TGG + chr4.3:26235836-26235855 None:intergenic 20.0%
!! ATGATATAAGATTACTTGAT+TGG + chr4.3:26238527-26238546 None:intergenic 20.0%
!! GTAAATATCATATTTGTTTC+TGG - chr4.3:26236715-26236734 MS.gene47479:intron 20.0%
!!! AAAAGTGAGAATTCATTTTA+GGG + chr4.3:26238490-26238509 None:intergenic 20.0%
!!! AGCAAATTTTCATCTATTAA+GGG - chr4.3:26236182-26236201 MS.gene47479:intron 20.0%
!!! GGCAGAAAAATTAATTTTTA+TGG - chr4.3:26237262-26237281 MS.gene47479:CDS 20.0%
!!! TAAAAATTAATTTTTCTGCC+TGG + chr4.3:26237262-26237281 None:intergenic 20.0%
!!! TAAAAGTGAGAATTCATTTT+AGG + chr4.3:26238491-26238510 None:intergenic 20.0%
!!! TAGCAAATTTTCATCTATTA+AGG - chr4.3:26236181-26236200 MS.gene47479:intron 20.0%
!!! TTAATTGCACTTTGAAAAAT+GGG - chr4.3:26235702-26235721 MS.gene47479:intron 20.0%
!!! TTGTTGTTATATTTTCACTT+TGG - chr4.3:26238165-26238184 MS.gene47479:intron 20.0%
! AAATGATCTTGATTTATTGC+TGG - chr4.3:26235269-26235288 MS.gene47479:intron 25.0%
! ATTGGACTCTTTAATGAATT+AGG - chr4.3:26235504-26235523 MS.gene47479:intron 25.0%
! ATTTATTGCTGGAAGTTATT+TGG - chr4.3:26235280-26235299 MS.gene47479:intron 25.0%
! CTCAGTGATTAATTAAATCA+AGG + chr4.3:26235397-26235416 None:intergenic 25.0%
! CTTGATTTAATTAATCACTG+AGG - chr4.3:26235395-26235414 MS.gene47479:intron 25.0%
! GACTTCATAATCAAAATCTA+AGG + chr4.3:26238468-26238487 None:intergenic 25.0%
! TATGCATGAATATTTGTTTC+TGG - chr4.3:26236812-26236831 MS.gene47479:intron 25.0%
! TTAAATCTCATATTTGTTCC+TGG - chr4.3:26236982-26237001 MS.gene47479:intron 25.0%
! TTGGACTCTTTAATGAATTA+GGG - chr4.3:26235505-26235524 MS.gene47479:intron 25.0%
! TTTATTGCTGGAAGTTATTT+GGG - chr4.3:26235281-26235300 MS.gene47479:intron 25.0%
! TTTGTCCAATAATGTATTGT+AGG - chr4.3:26235743-26235762 MS.gene47479:intron 25.0%
!! ATCTTTTTGTGTGTGATTAT+TGG - chr4.3:26235486-26235505 MS.gene47479:CDS 25.0%
!! CTTAATTGCACTTTGAAAAA+TGG - chr4.3:26235701-26235720 MS.gene47479:intron 25.0%
!! TAATTGCACTTTGAAAAATG+GGG - chr4.3:26235703-26235722 MS.gene47479:intron 25.0%
!! TTCTTTTGATATCTCAGTAA+CGG - chr4.3:26237544-26237563 MS.gene47479:CDS 25.0%
!! TTTTCATTATAACTGAAAGG+AGG - chr4.3:26236459-26236478 MS.gene47479:intron 25.0%
!!! GTGCATATCTATTTTTATGT+TGG - chr4.3:26236551-26236570 MS.gene47479:intron 25.0%
AAAGTGCAATTAAGAGATCT+AGG + chr4.3:26235695-26235714 None:intergenic 30.0%
AACAGTATACATCATGAGAT+AGG + chr4.3:26237124-26237143 None:intergenic 30.0%
AACCAGGGAATTGAATTATT+AGG + chr4.3:26236486-26236505 None:intergenic 30.0%
AAGTATTCCTCAAATGGATA+GGG - chr4.3:26237818-26237837 MS.gene47479:intron 30.0%
ACATCACCAAATTGCAAAAA+TGG + chr4.3:26237634-26237653 None:intergenic 30.0%
ACGATCTATATCTATGCTAA+GGG + chr4.3:26237729-26237748 None:intergenic 30.0%
AGCACACTTACAAATAAAAC+AGG + chr4.3:26236621-26236640 None:intergenic 30.0%
ATAGTAATATCAATCCAACC+AGG + chr4.3:26236502-26236521 None:intergenic 30.0%
GCAAGTCTAGTTAAAAACAT+TGG + chr4.3:26235664-26235683 None:intergenic 30.0%
GTATGATGAATAAATCGAAG+TGG - chr4.3:26236595-26236614 MS.gene47479:intron 30.0%
GTTAAAAACATTGGTCAACA+AGG + chr4.3:26235655-26235674 None:intergenic 30.0%
GTTATGCATGAATTCAAACA+TGG - chr4.3:26236786-26236805 MS.gene47479:intron 30.0%
TAAGTATTCCTCAAATGGAT+AGG - chr4.3:26237817-26237836 MS.gene47479:intron 30.0%
TAATAAGCAAACTGGTCAAT+CGG - chr4.3:26235923-26235942 MS.gene47479:CDS 30.0%
TAATAATTCAATTCCCTGGT+TGG - chr4.3:26236485-26236504 MS.gene47479:intron 30.0%
TAATGATGAGGATGAACATA+AGG + chr4.3:26234917-26234936 None:intergenic 30.0%
TACGATCTATATCTATGCTA+AGG + chr4.3:26237730-26237749 None:intergenic 30.0%
TAGTAATATCAATCCAACCA+GGG + chr4.3:26236501-26236520 None:intergenic 30.0%
TATCTGTTGCAGATATTTGT+TGG - chr4.3:26237568-26237587 MS.gene47479:CDS 30.0%
TGCAAGGAAATATAACAAAG+TGG + chr4.3:26237080-26237099 None:intergenic 30.0%
TTAGTACACAAACTTAGAAC+AGG + chr4.3:26238237-26238256 None:intergenic 30.0%
TTGACTCTTGTGATTTAAGT+TGG - chr4.3:26235535-26235554 MS.gene47479:intron 30.0%
TTGGTCATAAATGCGATAAT+CGG + chr4.3:26235817-26235836 None:intergenic 30.0%
TTTAGTAGTGTAAGCAATAC+AGG - chr4.3:26238276-26238295 MS.gene47479:intron 30.0%
! TGACTTTTCAATACAAGTCT+TGG - chr4.3:26236663-26236682 MS.gene47479:intron 30.0%
! TTTTATTGTCGTCTTCTGAT+TGG - chr4.3:26235844-26235863 MS.gene47479:intron 30.0%
!! AGACAACCATTTTTGCAATT+TGG - chr4.3:26237625-26237644 MS.gene47479:CDS 30.0%
!!! GGATTGCCATAAGTTTTTTT+GGG + chr4.3:26236356-26236375 None:intergenic 30.0%
!!! GTATCGTCTTATTTTTGACT+GGG - chr4.3:26237969-26237988 MS.gene47479:intron 30.0%
!!! GTTTGTTGATGTTTTTTCGT+TGG - chr4.3:26235866-26235885 MS.gene47479:CDS 30.0%
!!! TGGATTGCCATAAGTTTTTT+TGG + chr4.3:26236357-26236376 None:intergenic 30.0%
!!! TGTATCGTCTTATTTTTGAC+TGG - chr4.3:26237968-26237987 MS.gene47479:intron 30.0%
AAACTCACATGCTTATTTCC+TGG + chr4.3:26238123-26238142 None:intergenic 35.0%
AAAGTCTTGCAGAACTTCAA+TGG - chr4.3:26235990-26236009 MS.gene47479:intron 35.0%
AATGACTCTAATGGTTATGG+AGG - chr4.3:26238595-26238614 MS.gene47479:CDS 35.0%
ACATAAGGCATATAATGCTG+AGG + chr4.3:26234902-26234921 None:intergenic 35.0%
AGAATCTTGAATGCATAACC+AGG - chr4.3:26237241-26237260 MS.gene47479:CDS 35.0%
AGAGCAATGACTGAAATGAA+TGG - chr4.3:26236287-26236306 MS.gene47479:intron 35.0%
AGCGCACTTACAAATAAAAC+AGG + chr4.3:26236891-26236910 None:intergenic 35.0%
AGGAATGACTCTAATGGTTA+TGG - chr4.3:26238592-26238611 MS.gene47479:CDS 35.0%
ATACATCATGAGATAGGCAA+GGG + chr4.3:26237118-26237137 None:intergenic 35.0%
ATATGCTGCTAGACAAAATC+AGG - chr4.3:26238654-26238673 MS.gene47479:CDS 35.0%
ATCCATTACTTCCATATCCA+TGG + chr4.3:26238636-26238655 None:intergenic 35.0%
ATCTGATCTCTCTGTATTTG+TGG - chr4.3:26236109-26236128 MS.gene47479:CDS 35.0%
ATGAAGAGTTGGCATAATCA+AGG + chr4.3:26237847-26237866 None:intergenic 35.0%
ATGTTACAGAAAGAATGCTG+AGG - chr4.3:26238029-26238048 MS.gene47479:intron 35.0%
CATAGCATCAGTAACATCTA+TGG + chr4.3:26236144-26236163 None:intergenic 35.0%
GCAACACCCAAAAAAACTTA+TGG - chr4.3:26236347-26236366 MS.gene47479:intron 35.0%
GTCATACGTAATAAGCAAAC+TGG - chr4.3:26235915-26235934 MS.gene47479:CDS 35.0%
GTCCTAATAATTCAATTCCC+TGG - chr4.3:26236481-26236500 MS.gene47479:intron 35.0%
TATAACACGAGAGTTATCAC+TGG - chr4.3:26237323-26237342 MS.gene47479:CDS 35.0%
TATACATCATGAGATAGGCA+AGG + chr4.3:26237119-26237138 None:intergenic 35.0%
TCTAATACTGGTCGTTCAAA+AGG - chr4.3:26236224-26236243 MS.gene47479:intron 35.0%
TCTGATCTCTCTGTATTTGT+GGG - chr4.3:26236110-26236129 MS.gene47479:CDS 35.0%
TCTGTAACATAAAGAGCAGA+AGG + chr4.3:26238019-26238038 None:intergenic 35.0%
TCTTAAACTAGCTGTAGTGT+TGG - chr4.3:26237405-26237424 MS.gene47479:CDS 35.0%
TGGCATAAGTATTCCTCAAA+TGG - chr4.3:26237812-26237831 MS.gene47479:intron 35.0%
TTGCTTATTACGTATGACCT+TGG + chr4.3:26235913-26235932 None:intergenic 35.0%
TTTCACTTTGGCCATCTAAT+GGG - chr4.3:26238177-26238196 MS.gene47479:intron 35.0%
! ATGCTGAAGGTATATGAATG+CGG + chr4.3:26238383-26238402 None:intergenic 35.0%
! CTCGTAATTTTCCCATTAGA+TGG + chr4.3:26238191-26238210 None:intergenic 35.0%
! TATACTTTTGGTACCCTAAG+TGG - chr4.3:26235598-26235617 MS.gene47479:intron 35.0%
! TGGTTTCCTTTTTCTATCCT+TGG - chr4.3:26235555-26235574 MS.gene47479:intron 35.0%
! TTTTCACTTTGGCCATCTAA+TGG - chr4.3:26238176-26238195 MS.gene47479:intron 35.0%
!! GTTGTCATTGACTCTAATAC+TGG - chr4.3:26236212-26236231 MS.gene47479:intron 35.0%
!! TTCCTGGCTTTATGCATTAA+TGG - chr4.3:26236998-26237017 MS.gene47479:intron 35.0%
!!! CAAAAGGCTATGGTTTTGTT+AGG - chr4.3:26236240-26236259 MS.gene47479:intron 35.0%
AAGGATTCCCTATCCATTTG+AGG + chr4.3:26237828-26237847 None:intergenic 40.0%
AATGCTGAGGAAGCAATTCA+GGG - chr4.3:26238042-26238061 MS.gene47479:intron 40.0%
AATTCTTTGTGATGTCGCAG+TGG - chr4.3:26238569-26238588 MS.gene47479:CDS 40.0%
AGCAACTAGTTACATGCTGA+AGG + chr4.3:26238396-26238415 None:intergenic 40.0%
ATCTCTGTGAAAATCCCAGT+CGG - chr4.3:26237655-26237674 MS.gene47479:intron 40.0%
ATCTTATATGGGCAATGCCA+AGG + chr4.3:26235575-26235594 None:intergenic 40.0%
ATGGCGTTTATTGTTCTAGC+AGG - chr4.3:26236306-26236325 MS.gene47479:intron 40.0%
CAATGTCTAAGCGTCAAAGT+CGG + chr4.3:26235794-26235813 None:intergenic 40.0%
CATAACTGCTTTGCTCATAC+TGG - chr4.3:26235112-26235131 MS.gene47479:intron 40.0%
CCACAACAATATTCTTCGCA+AGG - chr4.3:26236374-26236393 MS.gene47479:intron 40.0%
CCTTGCGAAGAATATTGTTG+TGG + chr4.3:26236377-26236396 None:intergenic 40.0%
GAAGCAATTCAGGGATTGAA+TGG - chr4.3:26238051-26238070 MS.gene47479:intron 40.0%
GAATAGATTCAAGTGGTGCA+AGG + chr4.3:26237096-26237115 None:intergenic 40.0%
GCAATGCCAAGGATAGAAAA+AGG + chr4.3:26235564-26235583 None:intergenic 40.0%
GGATTGAATGGAACAGTGAT+TGG - chr4.3:26238063-26238082 MS.gene47479:intron 40.0%
GTCCATTAATGCATAAAGCC+AGG + chr4.3:26237003-26237022 None:intergenic 40.0%
GTCTCGTTCTCTTTGTAATC+AGG - chr4.3:26238210-26238229 MS.gene47479:intron 40.0%
GTTAGAATCCCCTTCAGATT+GGG + chr4.3:26237473-26237492 None:intergenic 40.0%
GTTTCTTGCGAAATGAACAG+TGG - chr4.3:26237792-26237811 MS.gene47479:intron 40.0%
TATGATGCCAAATACCGATC+AGG - chr4.3:26236016-26236035 MS.gene47479:intron 40.0%
TCATCCTGTGGAATCATGTA+AGG - chr4.3:26237863-26237882 MS.gene47479:intron 40.0%
TCATCCTTACATGATTCCAC+AGG + chr4.3:26237870-26237889 None:intergenic 40.0%
TCTAATGGTTATGGAGGTCA+TGG - chr4.3:26238601-26238620 MS.gene47479:CDS 40.0%
TCTCATCCATCCAATGATGA+AGG + chr4.3:26235084-26235103 None:intergenic 40.0%
TGTGGAATCATGTAAGGATG+AGG - chr4.3:26237869-26237888 MS.gene47479:intron 40.0%
TGTTAGAATCCCCTTCAGAT+TGG + chr4.3:26237474-26237493 None:intergenic 40.0%
TTTCGGCCTTCAAAACTCTA+GGG + chr4.3:26235626-26235645 None:intergenic 40.0%
! CTGTTGCAGATATTTGTTGG+AGG - chr4.3:26237571-26237590 MS.gene47479:CDS 40.0%
! GGTCAACAAGGTCACATTTT+CGG + chr4.3:26235643-26235662 None:intergenic 40.0%
! TGAAGTATCTGCAGCAGAAA+AGG + chr4.3:26236437-26236456 None:intergenic 40.0%
! TTTTCGGCCTTCAAAACTCT+AGG + chr4.3:26235627-26235646 None:intergenic 40.0%
!! AAGGTTGGTGCTGATTTAAG+TGG + chr4.3:26236418-26236437 None:intergenic 40.0%
!! GGTTTGGTGATGAAAGTGAA+AGG - chr4.3:26236261-26236280 MS.gene47479:intron 40.0%
!!! GGCTATGGTTTTGTTAGGTT+TGG - chr4.3:26236245-26236264 MS.gene47479:intron 40.0%
!!! GTTTTGTTCAACTTGCTGAC+AGG - chr4.3:26237689-26237708 MS.gene47479:intron 40.0%
!!! TCGTCTTATTTTTGACTGGG+TGG - chr4.3:26237972-26237991 MS.gene47479:intron 40.0%
!!! TTTTTCGTTGGCTTATGTGC+AGG - chr4.3:26235878-26235897 MS.gene47479:CDS 40.0%
AAACCACATCCTTTACCGAC+TGG + chr4.3:26237673-26237692 None:intergenic 45.0%
AAGCAAACTGGTCAATCGGA+GGG - chr4.3:26235927-26235946 MS.gene47479:CDS 45.0%
ACACAACTGTGAGTCTGCTT+TGG - chr4.3:26237494-26237513 MS.gene47479:CDS 45.0%
ACTGGTCGTTCAAAAGGCTA+TGG - chr4.3:26236230-26236249 MS.gene47479:intron 45.0%
ATCAGGCGTTTCGTCTGAAT+TGG - chr4.3:26236033-26236052 MS.gene47479:intron 45.0%
ATCATAGCCATAGCAGTAGC+TGG + chr4.3:26234857-26234876 None:intergenic 45.0%
ATTCAGACGAAACGCCTGAT+CGG + chr4.3:26236033-26236052 None:intergenic 45.0%
CAGTGGAGGAATGACTCTAA+TGG - chr4.3:26238586-26238605 MS.gene47479:CDS 45.0%
CTCTGTATTTGTGGGAGACT+TGG - chr4.3:26236118-26236137 MS.gene47479:CDS 45.0%
GAATGCTGAGGAAGCAATTC+AGG - chr4.3:26238041-26238060 MS.gene47479:intron 45.0%
GATTCCACAGGATGAAGAGT+TGG + chr4.3:26237858-26237877 None:intergenic 45.0%
GGCAAGGGAATAGATTCAAG+TGG + chr4.3:26237103-26237122 None:intergenic 45.0%
GGCCATGGATATGGAAGTAA+TGG - chr4.3:26238631-26238650 MS.gene47479:CDS 45.0%
GGCTTATGTGCAGGTTGTAT+CGG - chr4.3:26235887-26235906 MS.gene47479:CDS 45.0%
GGTTATGGAGGTCATGGATA+TGG - chr4.3:26238607-26238626 MS.gene47479:CDS 45.0%
GTATCTGCAGCAGAAAAGGT+TGG + chr4.3:26236433-26236452 None:intergenic 45.0%
GTGAAAATCCCAGTCGGTAA+AGG - chr4.3:26237661-26237680 MS.gene47479:intron 45.0%
TAAGCAAACTGGTCAATCGG+AGG - chr4.3:26235926-26235945 MS.gene47479:CDS 45.0%
TATGCCAACTCTTCATCCTG+TGG - chr4.3:26237851-26237870 MS.gene47479:intron 45.0%
TATGGAGGTCATGGATATGG+TGG - chr4.3:26238610-26238629 MS.gene47479:CDS 45.0%
TCAGGCGTTTCGTCTGAATT+GGG - chr4.3:26236034-26236053 MS.gene47479:intron 45.0%
TGACTCTGACATTAGTGACG+AGG - chr4.3:26237597-26237616 MS.gene47479:CDS 45.0%
TGGTGACCTTCATCATTGGA+TGG - chr4.3:26235075-26235094 MS.gene47479:intron 45.0%
TTCGGCCTTCAAAACTCTAG+GGG + chr4.3:26235625-26235644 None:intergenic 45.0%
! AAAACTCTAGGGGACCACTT+AGG + chr4.3:26235615-26235634 None:intergenic 45.0%
! AAACTCTAGGGGACCACTTA+GGG + chr4.3:26235614-26235633 None:intergenic 45.0%
! AACCACATCCTTTACCGACT+GGG + chr4.3:26237672-26237691 None:intergenic 45.0%
!! AAACTAGCTGTAGTGTTGGC+TGG - chr4.3:26237409-26237428 MS.gene47479:CDS 45.0%
!! TTATATTTAATAAACATTTA+TGG + chr4.3:26236843-26236862 None:intergenic 5.0%
AACCTGCTGCTGCAGTTCAA+GGG - chr4.3:26238689-26238708 MS.gene47479:CDS 50.0%
ACTGGTCAATCGGAGGGATA+TGG - chr4.3:26235933-26235952 MS.gene47479:CDS 50.0%
AGCAGACAGTGCGTCTTTCT+TGG - chr4.3:26238088-26238107 MS.gene47479:intron 50.0%
ATCCCAGTCGGTAAAGGATG+TGG - chr4.3:26237667-26237686 MS.gene47479:intron 50.0%
CAGACAGTGCGTCTTTCTTG+GGG - chr4.3:26238090-26238109 MS.gene47479:intron 50.0%
CAGATCGTCCTGATCTCTTC+AGG + chr4.3:26235052-26235071 None:intergenic 50.0%
CCAAGGTTCCCAATCTGAAG+GGG - chr4.3:26237462-26237481 MS.gene47479:CDS 50.0%
CCATCGGCACATAGTCATCA+TGG - chr4.3:26234977-26234996 MS.gene47479:intron 50.0%
CCATGATGACTATGTGCCGA+TGG + chr4.3:26234980-26234999 None:intergenic 50.0%
CCCAAGGTTCCCAATCTGAA+GGG - chr4.3:26237461-26237480 MS.gene47479:CDS 50.0%
CCCTTCAGATTGGGAACCTT+GGG + chr4.3:26237464-26237483 None:intergenic 50.0%
CGAAACGCCTGATCGGTATT+TGG + chr4.3:26236026-26236045 None:intergenic 50.0%
CTGAAGAGATCAGGACGATC+TGG - chr4.3:26235050-26235069 MS.gene47479:intron 50.0%
CTGCTTTGCTCATACTGGAG+AGG - chr4.3:26235117-26235136 MS.gene47479:intron 50.0%
CTTGCTGACAGGTACACTTG+TGG - chr4.3:26237700-26237719 MS.gene47479:intron 50.0%
GCAGACAGTGCGTCTTTCTT+GGG - chr4.3:26238089-26238108 MS.gene47479:intron 50.0%
GCAGTATCCAGCTACTGCTA+TGG - chr4.3:26234847-26234866 MS.gene47479:CDS 50.0%
GCTGATACTGATGCTGCTGA+TGG + chr4.3:26235006-26235025 None:intergenic 50.0%
GGATATGGTGGCCATGGATA+TGG - chr4.3:26238622-26238641 MS.gene47479:CDS 50.0%
GTTGCAACACCTACTCGCAT+AGG + chr4.3:26236332-26236351 None:intergenic 50.0%
TCGGCACATAGTCATCATGG+CGG - chr4.3:26234980-26234999 MS.gene47479:intron 50.0%
TCTTTGTGATGTCGCAGTGG+AGG - chr4.3:26238572-26238591 MS.gene47479:CDS 50.0%
! GGCTGCTGCTGATAATGATG+AGG + chr4.3:26234929-26234948 None:intergenic 50.0%
! TGATGACTATGTGCCGATGG+CGG + chr4.3:26234977-26234996 None:intergenic 50.0%
!! GACACTTGCTGTTGATGAGG+TGG + chr4.3:26234950-26234969 None:intergenic 50.0%
!! GGCTTGGTGACCTTCATCAT+TGG - chr4.3:26235071-26235090 MS.gene47479:intron 50.0%
!! GTGGTCCCCTAGAGTTTTGA+AGG - chr4.3:26235617-26235636 MS.gene47479:intron 50.0%
ACCTGCTGCTGCAGTTCAAG+GGG - chr4.3:26238690-26238709 MS.gene47479:CDS 55.0%
CAACCTGCTGCTGCAGTTCA+AGG - chr4.3:26238688-26238707 MS.gene47479:CDS 55.0%
CCCCTTCAGATTGGGAACCT+TGG + chr4.3:26237465-26237484 None:intergenic 55.0%
CGAGTTCTACACGCGAGCAA+TGG - chr4.3:26235962-26235981 MS.gene47479:intron 55.0%
GAGATCAGGACGATCTGGCT+TGG - chr4.3:26235055-26235074 MS.gene47479:intron 55.0%
GCCCAAGGTTCCCAATCTGA+AGG - chr4.3:26237460-26237479 MS.gene47479:CDS 55.0%
GGTCATGGATATGGTGGCCA+TGG - chr4.3:26238616-26238635 MS.gene47479:CDS 55.0%
TCTAGCAGGCCTATGCGAGT+AGG - chr4.3:26236320-26236339 MS.gene47479:intron 55.0%
! TGGACACTCCAATGGTGCTG+TGG - chr4.3:26237438-26237457 MS.gene47479:CDS 55.0%
! TGTGCAGGTTGTATCGGCCA+AGG - chr4.3:26235893-26235912 MS.gene47479:CDS 55.0%
!! CTAGCTGTAGTGTTGGCTGG+TGG - chr4.3:26237412-26237431 MS.gene47479:CDS 55.0%
!! GGCGACACTTGCTGTTGATG+AGG + chr4.3:26234953-26234972 None:intergenic 55.0%
AAACCGCCCACTGTGCTGTG+GGG + chr4.3:26237776-26237795 None:intergenic 60.0%
ACATTCAGCGCTGCTGGTGG+TGG - chr4.3:26236059-26236078 MS.gene47479:CDS 60.0%
ACCTTGGGCCACAGCACCAT+TGG + chr4.3:26237449-26237468 None:intergenic 60.0%
AGAAACCGCCCACTGTGCTG+TGG + chr4.3:26237778-26237797 None:intergenic 60.0%
AGCTGGCGCCTGAAGAGATC+AGG - chr4.3:26235041-26235060 MS.gene47479:intron 60.0%
CTTTCTTGGGGTCGCAGTCC+AGG - chr4.3:26238102-26238121 MS.gene47479:intron 60.0%
GAAACCGCCCACTGTGCTGT+GGG + chr4.3:26237777-26237796 None:intergenic 60.0%
GCAGCATCAGCAGAAGCAGC+TGG - chr4.3:26235024-26235043 MS.gene47479:intron 60.0%
GCTACATTCAGCGCTGCTGG+TGG - chr4.3:26236056-26236075 MS.gene47479:intron 60.0%
TGCAACCCCCACAGCACAGT+GGG - chr4.3:26237767-26237786 MS.gene47479:intron 60.0%
TGGGCTACATTCAGCGCTGC+TGG - chr4.3:26236053-26236072 MS.gene47479:intron 60.0%
TTGCAACCCCCACAGCACAG+TGG - chr4.3:26237766-26237785 MS.gene47479:intron 60.0%
! TGACTATGTGCCGATGGCGG+CGG + chr4.3:26234974-26234993 None:intergenic 60.0%
!! GCTGTAGTGTTGGCTGGTGG+CGG - chr4.3:26237415-26237434 MS.gene47479:CDS 60.0%
!! TCCAATGGTGCTGTGGCCCA+AGG - chr4.3:26237445-26237464 MS.gene47479:CDS 60.0%
AACCCCCACAGCACAGTGGG+CGG - chr4.3:26237770-26237789 MS.gene47479:intron 65.0%
AACCGCCCACTGTGCTGTGG+GGG + chr4.3:26237775-26237794 None:intergenic 65.0%
GCCCCTTGAACTGCAGCAGC+AGG + chr4.3:26238694-26238713 None:intergenic 65.0%
! GGTGGCGGTGGACACTCCAA+TGG - chr4.3:26237430-26237449 MS.gene47479:CDS 65.0%
!! GTAGTGTTGGCTGGTGGCGG+TGG - chr4.3:26237418-26237437 MS.gene47479:CDS 65.0%
!! TTCAGCGCTGCTGGTGGTGG+TGG - chr4.3:26236062-26236081 MS.gene47479:CDS 65.0%
! GCAAGTGTCGCCGCCGCCAT+CGG - chr4.3:26234961-26234980 MS.gene47479:intron 70.0%
!! CTGCTGGTGGTGGTGGCGAG+AGG - chr4.3:26236069-26236088 MS.gene47479:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 26234839 26238720 26234839 ID=MS.gene47479
chr4.3 mRNA 26234839 26238720 26234839 ID=MS.gene47479.t1;Parent=MS.gene47479
chr4.3 exon 26238421 26238720 26238421 ID=MS.gene47479.t1.exon1;Parent=MS.gene47479.t1
chr4.3 CDS 26238421 26238720 26238421 ID=cds.MS.gene47479.t1;Parent=MS.gene47479.t1
chr4.3 exon 26237164 26237659 26237164 ID=MS.gene47479.t1.exon2;Parent=MS.gene47479.t1
chr4.3 CDS 26237164 26237659 26237164 ID=cds.MS.gene47479.t1;Parent=MS.gene47479.t1
chr4.3 exon 26236058 26236143 26236058 ID=MS.gene47479.t1.exon3;Parent=MS.gene47479.t1
chr4.3 CDS 26236058 26236143 26236058 ID=cds.MS.gene47479.t1;Parent=MS.gene47479.t1
chr4.3 exon 26235849 26235979 26235849 ID=MS.gene47479.t1.exon4;Parent=MS.gene47479.t1
chr4.3 CDS 26235849 26235979 26235849 ID=cds.MS.gene47479.t1;Parent=MS.gene47479.t1
chr4.3 exon 26235425 26235521 26235425 ID=MS.gene47479.t1.exon5;Parent=MS.gene47479.t1
chr4.3 CDS 26235425 26235521 26235425 ID=cds.MS.gene47479.t1;Parent=MS.gene47479.t1
chr4.3 exon 26234839 26234970 26234839 ID=MS.gene47479.t1.exon6;Parent=MS.gene47479.t1
chr4.3 CDS 26234839 26234970 26234839 ID=cds.MS.gene47479.t1;Parent=MS.gene47479.t1
Gene Sequence

>MS.gene47479

ATGTCTATGCAGTATCCAGCTACTGCTATGGCTATGATGCAACAGCAGATGATGATGTATCCTCAGCATTATATGCCTTATGTTCATCCTCATCATTATCAGCAGCAGCCACCTCATCAACAGCAAGTGTCGCCGCCGCCATCGGCACATAGTCATCATGGCGGCCATCAGCAGCATCAGTATCAGCAGCATCAGCAGAAGCAGCTGGCGCCTGAAGAGATCAGGACGATCTGGCTTGGTGACCTTCATCATTGGATGGATGAGACTTTTCTTCATAACTGCTTTGCTCATACTGGAGAGGTTTATTTCTATCTCTTTAATTGTAATTGAATTTGTTAGATTTGCTGTTTTAATTTCAATATTAATATTAATATTAATATGCTTCATATGCTTAATTAATAGCATATCTTGTTAGTTTCTGTTTTTATATAAATGATCTTGATTTATTGCTGGAAGTTATTTGGGTACAAGCTTCTTTGTTTAATTTGCTGATTTGAATTTATTTAATTTGCTGATTTGATTTTATTTTATTTTATTTGAGATTGATTTAAGGAGCCTTGATTTAATTAATCACTGAGGATTTGTTGAACCTTGATTAAATGTTTTAACTTTTAAGCTATGATTTCGAGTTTAATTTAAGTTCATCGATCTTTTTGTGTGTGATTATTGGACTCTTTAATGAATTAGGGTTGTAAATTGACTCTTGTGATTTAAGTTGGTTTCCTTTTTCTATCCTTGGCATTGCCCATATAAGATAGTTATACTTTTGGTACCCTAAGTGGTCCCCTAGAGTTTTGAAGGCCGAAAATGTGACCTTGTTGACCAATGTTTTTAACTAGACTTGCTAGTATAACCTAGATCTCTTAATTGCACTTTGAAAAATGGGGCTAATCAAAATTTGCTTTTTGTCCAATAATGTATTGTAGGATATTCACATGTTAAATATCAATAGCCGACTTTGACGCTTAGACATTGCCGATTATCGCATTTATGACCAAACTTTTTTTTTATTGTCGTCTTCTGATTGGTTTGTTGATGTTTTTTCGTTGGCTTATGTGCAGGTTGTATCGGCCAAGGTCATACGTAATAAGCAAACTGGTCAATCGGAGGGATATGGATTTGTCGAGTTCTACACGCGAGCAATGGCTGAGAAAGTCTTGCAGAACTTCAATGGTACTATGATGCCAAATACCGATCAGGCGTTTCGTCTGAATTGGGCTACATTCAGCGCTGCTGGTGGTGGTGGCGAGAGGCGTTCTTCTGAAGCTTCATCTGATCTCTCTGTATTTGTGGGAGACTTGGCCATAGATGTTACTGATGCTATGCTTCAAGAGACATTTGCTAGCAAATTTTCATCTATTAAGGGAGCAAAAGTTGTCATTGACTCTAATACTGGTCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAGTGAAAGGACAAGAGCAATGACTGAAATGAATGGCGTTTATTGTTCTAGCAGGCCTATGCGAGTAGGTGTTGCAACACCCAAAAAAACTTATGGCAATCCACAACAATATTCTTCGCAAGGTTTGTTATTTAATTATTACCACTTAAATCAGCACCAACCTTTTCTGCTGCAGATACTTCAAATTTTCATTATAACTGAAAGGAGGTCCTAATAATTCAATTCCCTGGTTGGATTGATATTACTATTTTCTTTAATGATTTGTTTGATTTCATTTGTGCATATCTATTTTTATGTTGGTTAAAATTTGAATATAAACATGTATGATGAATAAATCGAAGTGGCCTGTTTTATTTGTAAGTGTGCTTTATGATTTCAGTAATCATACTTGACTTTTCAATACAAGTCTTGGAGCTTGTTGCATCTTAAATATGTTAATTCGTAAATATCATATTTGTTTCTGGCTTTATGCATGAATTTAAAAATGTGTGATAAATAAATTGTGAAGAATAGTTATGCATGAATTCAAACATGGCTTTATGCATGAATATTTGTTTCTGGCTTTACCATAAATGTTTATTAAATATAAACATGTATGTTAATTTGTAAGTTAGCCTGTTTTATTTGTAAGTGCGCTTTAGTATTCATAGTTGACTTTTCAATACAAGTCTCTGAGCTTGTTACTTCTTAAATATGTTAATTCGTATATTAAATCTCATATTTGTTCCTGGCTTTATGCATTAATGGACTTGCGCTTTTTATTTTTGACAATTGCTTATTGCAGATTTTTCTATGCTTTTGCACCACTTTGTTATATTTCCTTGCACCACTTGAATCTATTCCCTTGCCTATCTCATGATGTATACTGTTTGATGTCTAAACGACAAGTTTGTATTTTTCAACCTCAATCTATTTATTGAATGTTAGTGATGTATGTTTATAGATTTTTTTTTTTTTTTTGTAATTTAGAATCTTGAATGCATAACCAGGCAGAAAAATTAATTTTTATGGCATATATATTGCAAAGCTTTCTTGTTTATGTTTATGTTTATAACACGAGAGTTATCACTGGAATGCAGTAATATCACGTATCATGCTTCAGAATTTTAAATCACTGACTTTTTTTTTCTTTCTTAAACTAGCTGTAGTGTTGGCTGGTGGCGGTGGACACTCCAATGGTGCTGTGGCCCAAGGTTCCCAATCTGAAGGGGATTCTAACAACACAACTGTGAGTCTGCTTTGGTAGCTTTTTCTATATCTTTTAATCAACTTCTTTTGATATCTCAGTAACGGATATCTGTTGCAGATATTTGTTGGAGGACTTGACTCTGACATTAGTGACGAGGATCTCAGACAACCATTTTTGCAATTTGGTGATGTAATCTCTGTGAAAATCCCAGTCGGTAAAGGATGTGGTTTTGTTCAACTTGCTGACAGGTACACTTGTGGTATCCCTTAGCATAGATATAGATCGTAACTTGCTTGCAAGTCATTGCAACCCCCACAGCACAGTGGGCGGTTTCTTGCGAAATGAACAGTGGCATAAGTATTCCTCAAATGGATAGGGAATCCTTGATTATGCCAACTCTTCATCCTGTGGAATCATGTAAGGATGAGGATATGATAATAAAGAAAGTTGATGTGAACTACTGTATAAGATGCTATGATTCTGATTGCAATTGTAACTTCCAATATGTATCGTCTTATTTTTGACTGGGTGGATTAGCTATGTTTTAATAATGCCTTCTGCTCTTTATGTTACAGAAAGAATGCTGAGGAAGCAATTCAGGGATTGAATGGAACAGTGATTGGAAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATGTGAGTTTATTATTCTGCTCTGAATTCAATTTGTTGTTATATTTTCACTTTGGCCATCTAATGGGAAAATTACGAGTCTCGTTCTCTTTGTAATCAGGTCCTGTTCTAAGTTTGTGTACTAAATCTGTGAAACTAATTGTTTTTAGTAGTGTAAGCAATACAGGCATCAGTGTACTAAATGTGTTGTATATTTTCTATTATGAGCTGCATCTTCTACTTACAAACCAAATTATTTTATAAAATTTCCGCATTCATATACCTTCAGCATGTAACTAGTTGCTACTAAGAGTTTTCAATTAGCATATACATACACTTTTTAATTTCTTTTCACCTTAGATTTTGATTATGAAGTCCCTAAAATGAATTCTCACTTTTAAGTAAAGCAGAAACCAATCAAGTAATCTTATATCATCATTTAAATCCATCTCTAATTTAATTCTTTGTGATGTCGCAGTGGAGGAATGACTCTAATGGTTATGGAGGTCATGGATATGGTGGCCATGGATATGGAAGTAATGGATATGCTGCTAGACAAAATCAGGATATAGCTATGCAACCTGCTGCTGCAGTTCAAGGGGCTTCCTAA
Protein sequence

>MS.gene47479.t1

MSMQYPATAMAMMQQQMMMYPQHYMPYVHPHHYQQQPPHQQQVSPPPSAHSHHGGHQQHQYQQHQQKQLAPEEIRTIWLGDLHHWMDETFLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNFNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEASSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGGGHSNGAVAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVISVKIPVGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLSWGRSPGNKHWRNDSNGYGGHGYGGHGYGSNGYAARQNQDIAMQPAAAVQGAS