Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59394.t1 | CAA41106.1 | 99.4 | 318 | 2 | 0 | 1 | 318 | 1 | 318 | 8.20E-178 | 632.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59394.t1 | P52575 | 99.1 | 318 | 3 | 0 | 1 | 318 | 1 | 318 | 7.5e-180 | 630.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59394.t1 | G7KEZ1 | 98.7 | 318 | 4 | 0 | 1 | 318 | 1 | 318 | 5.0e-177 | 629.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049611 | MS.gene59394 | 0.805171 | 1.52E-49 | -1.69E-46 |
| MS.gene049634 | MS.gene59394 | 0.81957 | 1.08E-52 | -1.69E-46 |
| MS.gene050216 | MS.gene59394 | -0.801981 | 6.97E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene59394 | 0.82732 | 1.67E-54 | -1.69E-46 |
| MS.gene050381 | MS.gene59394 | 0.851773 | 7.13E-61 | -1.69E-46 |
| MS.gene051127 | MS.gene59394 | 0.816258 | 6.07E-52 | -1.69E-46 |
| MS.gene051138 | MS.gene59394 | 0.808177 | 3.52E-50 | -1.69E-46 |
| MS.gene053406 | MS.gene59394 | 0.814952 | 1.19E-51 | -1.69E-46 |
| MS.gene053420 | MS.gene59394 | 0.841844 | 3.71E-58 | -1.69E-46 |
| MS.gene053561 | MS.gene59394 | 0.800784 | 1.23E-48 | -1.69E-46 |
| MS.gene055124 | MS.gene59394 | 0.885827 | 5.81E-72 | -1.69E-46 |
| MS.gene055154 | MS.gene59394 | 0.850772 | 1.37E-60 | -1.69E-46 |
| MS.gene055202 | MS.gene59394 | 0.825259 | 5.17E-54 | -1.69E-46 |
| MS.gene055959 | MS.gene59394 | 0.839648 | 1.40E-57 | -1.69E-46 |
| MS.gene056310 | MS.gene59394 | 0.81769 | 2.89E-52 | -1.69E-46 |
| MS.gene056313 | MS.gene59394 | 0.843551 | 1.31E-58 | -1.69E-46 |
| MS.gene058093 | MS.gene59394 | 0.848036 | 7.92E-60 | -1.69E-46 |
| MS.gene058099 | MS.gene59394 | 0.85689 | 2.37E-62 | -1.69E-46 |
| MS.gene058108 | MS.gene59394 | 0.856619 | 2.85E-62 | -1.69E-46 |
| MS.gene058109 | MS.gene59394 | 0.824584 | 7.46E-54 | -1.69E-46 |
| MS.gene058171 | MS.gene59394 | 0.877762 | 4.84E-69 | -1.69E-46 |
| MS.gene058173 | MS.gene59394 | 0.876316 | 1.54E-68 | -1.69E-46 |
| MS.gene058175 | MS.gene59394 | 0.879856 | 8.85E-70 | -1.69E-46 |
| MS.gene058176 | MS.gene59394 | 0.862391 | 5.24E-64 | -1.69E-46 |
| MS.gene058179 | MS.gene59394 | 0.857245 | 1.86E-62 | -1.69E-46 |
| MS.gene058180 | MS.gene59394 | 0.862414 | 5.15E-64 | -1.69E-46 |
| MS.gene058840 | MS.gene59394 | 0.848638 | 5.39E-60 | -1.69E-46 |
| MS.gene059037 | MS.gene59394 | 0.890614 | 8.40E-74 | -1.69E-46 |
| MS.gene059038 | MS.gene59394 | 0.885541 | 7.44E-72 | -1.69E-46 |
| MS.gene059044 | MS.gene59394 | 0.880529 | 5.09E-70 | -1.69E-46 |
| MS.gene059045 | MS.gene59394 | 0.868483 | 6.32E-66 | -1.69E-46 |
| MS.gene059223 | MS.gene59394 | 0.814878 | 1.23E-51 | -1.69E-46 |
| MS.gene059690 | MS.gene59394 | 0.802682 | 5.00E-49 | -1.69E-46 |
| MS.gene059694 | MS.gene59394 | 0.816069 | 6.69E-52 | -1.69E-46 |
| MS.gene059697 | MS.gene59394 | 0.820838 | 5.55E-53 | -1.69E-46 |
| MS.gene060205 | MS.gene59394 | 0.803252 | 3.81E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59394.t1 | MTR_5g020800 | 98.742 | 318 | 4 | 0 | 1 | 318 | 1 | 318 | 0.0 | 646 |
| MS.gene59394.t1 | MTR_5g020760 | 98.428 | 318 | 5 | 0 | 1 | 318 | 1 | 318 | 0.0 | 645 |
| MS.gene59394.t1 | MTR_5g020760 | 98.485 | 264 | 4 | 0 | 1 | 264 | 1 | 264 | 0.0 | 534 |
| MS.gene59394.t1 | MTR_5g020740 | 59.375 | 320 | 117 | 4 | 1 | 318 | 1 | 309 | 2.45e-134 | 384 |
| MS.gene59394.t1 | MTR_3g111980 | 57.632 | 321 | 122 | 4 | 1 | 318 | 1 | 310 | 7.31e-124 | 357 |
| MS.gene59394.t1 | MTR_3g111990 | 55.486 | 319 | 130 | 3 | 1 | 318 | 1 | 308 | 3.20e-121 | 350 |
| MS.gene59394.t1 | MTR_3g116840 | 55.238 | 315 | 129 | 3 | 5 | 318 | 9 | 312 | 2.20e-118 | 343 |
| MS.gene59394.t1 | MTR_4g070370 | 49.515 | 309 | 144 | 3 | 7 | 314 | 10 | 307 | 9.87e-103 | 304 |
| MS.gene59394.t1 | MTR_4g070340 | 49.038 | 312 | 147 | 3 | 6 | 316 | 8 | 308 | 1.70e-98 | 293 |
| MS.gene59394.t1 | MTR_4g070340 | 48.077 | 312 | 145 | 4 | 6 | 316 | 8 | 303 | 3.33e-93 | 280 |
| MS.gene59394.t1 | MTR_4g070340 | 50.201 | 249 | 123 | 1 | 69 | 316 | 11 | 259 | 4.94e-82 | 250 |
| MS.gene59394.t1 | MTR_4g070360 | 39.623 | 318 | 178 | 3 | 4 | 318 | 3 | 309 | 4.39e-81 | 248 |
| MS.gene59394.t1 | MTR_5g027290 | 41.433 | 321 | 168 | 5 | 4 | 317 | 3 | 310 | 3.19e-80 | 246 |
| MS.gene59394.t1 | MTR_5g027240 | 42.056 | 321 | 166 | 5 | 4 | 317 | 3 | 310 | 3.74e-79 | 243 |
| MS.gene59394.t1 | MTR_8g071130 | 40.123 | 324 | 171 | 8 | 4 | 318 | 3 | 312 | 1.02e-73 | 229 |
| MS.gene59394.t1 | MTR_3g008140 | 38.801 | 317 | 179 | 5 | 2 | 318 | 3 | 304 | 5.26e-72 | 225 |
| MS.gene59394.t1 | MTR_3g007970 | 38.365 | 318 | 180 | 6 | 2 | 318 | 3 | 305 | 4.76e-71 | 223 |
| MS.gene59394.t1 | MTR_3g008100 | 38.006 | 321 | 177 | 6 | 2 | 318 | 3 | 305 | 4.95e-69 | 218 |
| MS.gene59394.t1 | MTR_3g008100 | 37.383 | 321 | 172 | 6 | 2 | 318 | 3 | 298 | 3.24e-65 | 207 |
| MS.gene59394.t1 | MTR_1g093720 | 34.796 | 319 | 193 | 4 | 3 | 318 | 12 | 318 | 2.01e-64 | 207 |
| MS.gene59394.t1 | MTR_3g008100 | 37.186 | 199 | 105 | 4 | 2 | 197 | 3 | 184 | 5.71e-37 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59394.t1 | AT1G75280 | 53.125 | 320 | 136 | 4 | 1 | 317 | 1 | 309 | 5.70e-115 | 335 |
| MS.gene59394.t1 | AT1G75290 | 52.648 | 321 | 137 | 5 | 1 | 317 | 1 | 310 | 7.31e-115 | 335 |
| MS.gene59394.t1 | AT4G39230 | 52.978 | 319 | 138 | 3 | 1 | 318 | 1 | 308 | 8.07e-115 | 334 |
| MS.gene59394.t1 | AT1G75290 | 52.648 | 321 | 137 | 5 | 1 | 317 | 28 | 337 | 3.39e-114 | 334 |
| MS.gene59394.t1 | AT1G75300 | 49.254 | 335 | 138 | 6 | 1 | 317 | 1 | 321 | 1.87e-103 | 306 |
| MS.gene59394.t1 | AT1G19540 | 48.589 | 319 | 148 | 5 | 5 | 318 | 3 | 310 | 2.04e-98 | 293 |
| MS.gene59394.t1 | AT4G34540 | 37.658 | 316 | 180 | 2 | 4 | 318 | 7 | 306 | 8.46e-80 | 245 |
| MS.gene59394.t1 | AT1G19540 | 49.242 | 264 | 119 | 4 | 5 | 264 | 3 | 255 | 1.13e-78 | 241 |
| MS.gene59394.t1 | AT1G32100 | 39.130 | 322 | 176 | 5 | 4 | 318 | 9 | 317 | 1.14e-75 | 235 |
| MS.gene59394.t1 | AT4G13660 | 40.062 | 322 | 173 | 5 | 4 | 318 | 9 | 317 | 6.09e-75 | 233 |
| MS.gene59394.t1 | AT4G13660 | 40.062 | 322 | 173 | 5 | 4 | 318 | 9 | 317 | 6.09e-75 | 233 |
Find 69 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAAGCTCTTCCTTGGTTTC+AGG | 0.162720 | 5.4:-12640966 | None:intergenic |
| AAAGAGCAATAACCTCATTT+TGG | 0.179311 | 5.4:-12641797 | None:intergenic |
| CCTTTGTTGCCACGCCTTTA+CGG | 0.184750 | 5.4:+12641488 | MS.gene59394:CDS |
| CGGGACAAAGTTGTCATTCT+TGG | 0.251205 | 5.4:+12641558 | MS.gene59394:CDS |
| ATTGACAATTACCAATCTTT+AGG | 0.260595 | 5.4:+12640987 | MS.gene59394:CDS |
| AAAATGAGGTTATTGCTCTT+TGG | 0.277659 | 5.4:+12641799 | MS.gene59394:CDS |
| AATTCTTGGGGAGTCTAATA+TGG | 0.296473 | 5.4:-12641767 | None:intergenic |
| AAATGAGGTTATTGCTCTTT+GGG | 0.307200 | 5.4:+12641800 | MS.gene59394:CDS |
| CTTTGTTGCCACGCCTTTAC+GGG | 0.310036 | 5.4:+12641489 | MS.gene59394:CDS |
| TATCATTCACAACAAATAAA+AGG | 0.321793 | 5.4:+12642097 | MS.gene59394:CDS |
| CCATTGGAAGACACATAGTT+TGG | 0.324909 | 5.4:+12640853 | MS.gene59394:CDS |
| GGGATCATTTGCTGCTCTAA+TGG | 0.371239 | 5.4:-12641724 | None:intergenic |
| TTAGCAGCTGTAATAAGCTT+TGG | 0.390009 | 5.4:-12640942 | None:intergenic |
| ATTCCCTCATAACTACTTGT+TGG | 0.401011 | 5.4:+12642069 | MS.gene59394:CDS |
| CTTCGGATTCAATTACTCTT+CGG | 0.415537 | 5.4:-12641449 | None:intergenic |
| AATGCCAACAAGTAGTTATG+AGG | 0.420203 | 5.4:-12642073 | None:intergenic |
| AGGAAATCCAACATATGCTT+TGG | 0.425743 | 5.4:+12640890 | MS.gene59394:CDS |
| ATCCTCATCCTAGGACCAAC+AGG | 0.432495 | 5.4:+12640828 | MS.gene59394:CDS |
| TAGACTATTAATTGAAGATC+AGG | 0.436797 | 5.4:+12641176 | MS.gene59394:CDS |
| CAATGGCTCCTGTTGGTCCT+AGG | 0.437873 | 5.4:-12640836 | None:intergenic |
| ATTAAAGCAATTAAAGAAGC+TGG | 0.439051 | 5.4:+12641207 | MS.gene59394:CDS |
| TTTGGCTTGTTAACATTGCC+AGG | 0.439374 | 5.4:-12640924 | None:intergenic |
| GTAGAATAACTCCTAAAGAT+TGG | 0.448622 | 5.4:-12640998 | None:intergenic |
| TGATCATGAAACTCTTGTTA+AGG | 0.455304 | 5.4:+12641116 | MS.gene59394:CDS |
| TTTCTAACCAAAGCATATGT+TGG | 0.458494 | 5.4:-12640897 | None:intergenic |
| GCAGTGGTGTATGTCACATC+TGG | 0.461849 | 5.4:-12642175 | None:intergenic |
| TTCAGAAGCTTCAATATCCT+TGG | 0.464046 | 5.4:-12642146 | None:intergenic |
| TAAAGAAGCTGGAAACGTTA+AGG | 0.465104 | 5.4:+12641218 | MS.gene59394:CDS |
| ACAGCTTTGTTCAATGTGTT+GGG | 0.466334 | 5.4:-12641744 | None:intergenic |
| CATTGGAAGACACATAGTTT+GGG | 0.475312 | 5.4:+12640854 | MS.gene59394:CDS |
| AAAGTTGTCATTCTTGGAGA+TGG | 0.476919 | 5.4:+12641564 | MS.gene59394:CDS |
| GACAGCTTTGTTCAATGTGT+TGG | 0.480648 | 5.4:-12641745 | None:intergenic |
| ATTGTCAATAAGCTCTTCCT+TGG | 0.481411 | 5.4:-12640973 | None:intergenic |
| GAAGCTTCAATATCCTTGGC+TGG | 0.488120 | 5.4:-12642142 | None:intergenic |
| CTCCTGTTGGTCCTAGGATG+AGG | 0.489729 | 5.4:-12640830 | None:intergenic |
| GAAAACAAAATCCTCATCCT+AGG | 0.516058 | 5.4:+12640819 | MS.gene59394:CDS |
| GGGTTACTTCTTACGTAACT+TGG | 0.518462 | 5.4:+12641509 | MS.gene59394:CDS |
| CGACGCAACTGATCCTCCTC+GGG | 0.522740 | 5.4:+12641539 | MS.gene59394:CDS |
| TGAGAAAACTTATGTTTCAG+AGG | 0.523834 | 5.4:+12641845 | MS.gene59394:CDS |
| GAATTATTTGACCCAAAATG+AGG | 0.524380 | 5.4:+12641785 | MS.gene59394:CDS |
| CAAGTTCTCAAAGATATTCA+AGG | 0.524774 | 5.4:+12641870 | MS.gene59394:CDS |
| CTAGGACCAACAGGAGCCAT+TGG | 0.526005 | 5.4:+12640837 | MS.gene59394:CDS |
| GATATTGTGATCTGTGCTGC+TGG | 0.528420 | 5.4:+12641153 | MS.gene59394:CDS |
| CCGTAAAGGCGTGGCAACAA+AGG | 0.531019 | 5.4:-12641488 | None:intergenic |
| GTAAGTGTAAGGAACTCCTT+CGG | 0.541959 | 5.4:-12641466 | None:intergenic |
| AGCTGCTAATCCTGAAACCA+AGG | 0.544614 | 5.4:+12640956 | MS.gene59394:CDS |
| GTTTGGGCAAGTATTAAAGC+AGG | 0.544920 | 5.4:+12640870 | MS.gene59394:CDS |
| CTTGGAGATGGAAATGTGAA+AGG | 0.559099 | 5.4:+12641576 | MS.gene59394:CDS |
| CCAAACTATGTGTCTTCCAA+TGG | 0.559467 | 5.4:-12640853 | None:intergenic |
| ACGTAAGAAGTAACCCGTAA+AGG | 0.560505 | 5.4:-12641502 | None:intergenic |
| TGTCTTCCAATGGCTCCTGT+TGG | 0.561834 | 5.4:-12640843 | None:intergenic |
| ACGTCTAGCCCAAATTCAGA+TGG | 0.563905 | 5.4:-12641369 | None:intergenic |
| TGGCAACAAAGGTAAGTGTA+AGG | 0.564377 | 5.4:-12641477 | None:intergenic |
| TCGACGCAACTGATCCTCCT+CGG | 0.582325 | 5.4:+12641538 | MS.gene59394:CDS |
| ATCTGAATTTGGGCTAGACG+TGG | 0.583561 | 5.4:+12641371 | MS.gene59394:CDS |
| ATATGTAACTGAGGCTGATG+TGG | 0.591299 | 5.4:+12641692 | MS.gene59394:CDS |
| TTTGGGTCAAATAATTCTTG+GGG | 0.592555 | 5.4:-12641779 | None:intergenic |
| ATGCCAACAAGTAGTTATGA+GGG | 0.605998 | 5.4:-12642072 | None:intergenic |
| TTCAGGAGCATATGTAACTG+AGG | 0.606604 | 5.4:+12641683 | MS.gene59394:intron |
| ATTCAAATATTCATCAGCAG+TGG | 0.611923 | 5.4:-12642191 | None:intergenic |
| CGTCTAGCCCAAATTCAGAT+GGG | 0.623219 | 5.4:-12641368 | None:intergenic |
| AGAAGTAACCCGTAAAGGCG+TGG | 0.632726 | 5.4:-12641497 | None:intergenic |
| CGAAGAGTAATTGAATCCGA+AGG | 0.633822 | 5.4:+12641450 | MS.gene59394:CDS |
| GCTAGACGTGGACCGTCATG+AGG | 0.637128 | 5.4:+12641383 | MS.gene59394:CDS |
| GTATGAGATTGATCCAGCCA+AGG | 0.645662 | 5.4:+12642129 | MS.gene59394:CDS |
| CTGGCTCAACTGCCTCATGA+CGG | 0.663026 | 5.4:-12641395 | None:intergenic |
| ATGACAACTTTGTCCCGAGG+AGG | 0.669433 | 5.4:-12641552 | None:intergenic |
| AGAATGACAACTTTGTCCCG+AGG | 0.692025 | 5.4:-12641555 | None:intergenic |
| TATGTAACTGAGGCTGATGT+GGG | 0.693471 | 5.4:+12641693 | MS.gene59394:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCAACAATGATTGATTAA+CGG | - | chr5.4:12641940-12641959 | None:intergenic | 20.0% |
| !! | TATCATTCACAACAAATAAA+AGG | + | chr5.4:12642097-12642116 | MS.gene59394:CDS | 20.0% |
| !!! | ATTTGCCTTAAATTTTTTTC+AGG | + | chr5.4:12641666-12641685 | MS.gene59394:intron | 20.0% |
| ! | ATGCTCCTGAAAAAAATTTA+AGG | - | chr5.4:12641674-12641693 | None:intergenic | 25.0% |
| ! | ATTAAAGCAATTAAAGAAGC+TGG | + | chr5.4:12641207-12641226 | MS.gene59394:CDS | 25.0% |
| ! | ATTGACAATTACCAATCTTT+AGG | + | chr5.4:12640987-12641006 | MS.gene59394:CDS | 25.0% |
| ! | TAGACTATTAATTGAAGATC+AGG | + | chr5.4:12641176-12641195 | MS.gene59394:CDS | 25.0% |
| !! | AAATTTTTCCCATCTGAATT+TGG | + | chr5.4:12641360-12641379 | MS.gene59394:CDS | 25.0% |
| !! | AATTTTTCCCATCTGAATTT+GGG | + | chr5.4:12641361-12641380 | MS.gene59394:CDS | 25.0% |
| !!! | ATTTTGGGTCAAATAATTCT+TGG | - | chr5.4:12641784-12641803 | None:intergenic | 25.0% |
| !!! | TTTTGGGTCAAATAATTCTT+GGG | - | chr5.4:12641783-12641802 | None:intergenic | 25.0% |
| AAAATGAGGTTATTGCTCTT+TGG | + | chr5.4:12641799-12641818 | MS.gene59394:CDS | 30.0% | |
| AAATGAGGTTATTGCTCTTT+GGG | + | chr5.4:12641800-12641819 | MS.gene59394:CDS | 30.0% | |
| ATTCAAATATTCATCAGCAG+TGG | - | chr5.4:12642194-12642213 | None:intergenic | 30.0% | |
| CAAAATTGCTGTAAAATGTG+CGG | - | chr5.4:12642006-12642025 | None:intergenic | 30.0% | |
| CAAGTTCTCAAAGATATTCA+AGG | + | chr5.4:12641870-12641889 | MS.gene59394:CDS | 30.0% | |
| GAATTATTTGACCCAAAATG+AGG | + | chr5.4:12641785-12641804 | MS.gene59394:CDS | 30.0% | |
| GTAGAATAACTCCTAAAGAT+TGG | - | chr5.4:12641001-12641020 | None:intergenic | 30.0% | |
| TCTTCAAAAACTTGTCTAAC+TGG | - | chr5.4:12641417-12641436 | None:intergenic | 30.0% | |
| TGAGAAAACTTATGTTTCAG+AGG | + | chr5.4:12641845-12641864 | MS.gene59394:CDS | 30.0% | |
| TGATCATGAAACTCTTGTTA+AGG | + | chr5.4:12641116-12641135 | MS.gene59394:CDS | 30.0% | |
| TTGCTCGTTATATTGAATGT+TGG | + | chr5.4:12641314-12641333 | MS.gene59394:intron | 30.0% | |
| TTTCTAACCAAAGCATATGT+TGG | - | chr5.4:12640900-12640919 | None:intergenic | 30.0% | |
| TTTGGGTCAAATAATTCTTG+GGG | - | chr5.4:12641782-12641801 | None:intergenic | 30.0% | |
| ! | AAAGAGCAATAACCTCATTT+TGG | - | chr5.4:12641800-12641819 | None:intergenic | 30.0% |
| ! | AAGAGCAATAACCTCATTTT+GGG | - | chr5.4:12641799-12641818 | None:intergenic | 30.0% |
| !!! | TAGGATGAGGATTTTGTTTT+CGG | - | chr5.4:12640820-12640839 | None:intergenic | 30.0% |
| AAAGTTGTCATTCTTGGAGA+TGG | + | chr5.4:12641564-12641583 | MS.gene59394:CDS | 35.0% | |
| AATATGTCCTTGAATCTGCA+GGG | + | chr5.4:12641084-12641103 | MS.gene59394:intron | 35.0% | |
| AATGCCAACAAGTAGTTATG+AGG | - | chr5.4:12642076-12642095 | None:intergenic | 35.0% | |
| AATTCTTGGGGAGTCTAATA+TGG | - | chr5.4:12641770-12641789 | None:intergenic | 35.0% | |
| AGGAAATCCAACATATGCTT+TGG | + | chr5.4:12640890-12640909 | MS.gene59394:CDS | 35.0% | |
| ATGCCAACAAGTAGTTATGA+GGG | - | chr5.4:12642075-12642094 | None:intergenic | 35.0% | |
| ATTCCCTCATAACTACTTGT+TGG | + | chr5.4:12642069-12642088 | MS.gene59394:CDS | 35.0% | |
| ATTGTCAATAAGCTCTTCCT+TGG | - | chr5.4:12640976-12640995 | None:intergenic | 35.0% | |
| CATTGGAAGACACATAGTTT+GGG | + | chr5.4:12640854-12640873 | MS.gene59394:CDS | 35.0% | |
| CTTCGGATTCAATTACTCTT+CGG | - | chr5.4:12641452-12641471 | None:intergenic | 35.0% | |
| GAAAACAAAATCCTCATCCT+AGG | + | chr5.4:12640819-12640838 | MS.gene59394:CDS | 35.0% | |
| TAAAGAAGCTGGAAACGTTA+AGG | + | chr5.4:12641218-12641237 | MS.gene59394:CDS | 35.0% | |
| TCAATCCATAACTCCTTTGA+CGG | + | chr5.4:12641283-12641302 | MS.gene59394:intron | 35.0% | |
| TTAGCAGCTGTAATAAGCTT+TGG | - | chr5.4:12640945-12640964 | None:intergenic | 35.0% | |
| TTCAGAAGCTTCAATATCCT+TGG | - | chr5.4:12642149-12642168 | None:intergenic | 35.0% | |
| ! | CTCTTTGGGAGAAAAAGATT+GGG | + | chr5.4:12641814-12641833 | MS.gene59394:CDS | 35.0% |
| !! | ACAGCTTTGTTCAATGTGTT+GGG | - | chr5.4:12641747-12641766 | None:intergenic | 35.0% |
| ACGTAAGAAGTAACCCGTAA+AGG | - | chr5.4:12641505-12641524 | None:intergenic | 40.0% | |
| AGCAAAGATCTAACCGTCAA+AGG | - | chr5.4:12641299-12641318 | None:intergenic | 40.0% | |
| ATAAGCTCTTCCTTGGTTTC+AGG | - | chr5.4:12640969-12640988 | None:intergenic | 40.0% | |
| ATATGTAACTGAGGCTGATG+TGG | + | chr5.4:12641692-12641711 | MS.gene59394:CDS | 40.0% | |
| CAATATGTCCTTGAATCTGC+AGG | + | chr5.4:12641083-12641102 | MS.gene59394:intron | 40.0% | |
| CCAAACTATGTGTCTTCCAA+TGG | - | chr5.4:12640856-12640875 | None:intergenic | 40.0% | |
| CCATTGGAAGACACATAGTT+TGG | + | chr5.4:12640853-12640872 | MS.gene59394:CDS | 40.0% | |
| CGAAGAGTAATTGAATCCGA+AGG | + | chr5.4:12641450-12641469 | MS.gene59394:CDS | 40.0% | |
| CTTGGAGATGGAAATGTGAA+AGG | + | chr5.4:12641576-12641595 | MS.gene59394:CDS | 40.0% | |
| GCTTTGGTTAGAAAAACACC+TGG | + | chr5.4:12640906-12640925 | MS.gene59394:CDS | 40.0% | |
| GGGTTACTTCTTACGTAACT+TGG | + | chr5.4:12641509-12641528 | MS.gene59394:CDS | 40.0% | |
| GTAAGTGTAAGGAACTCCTT+CGG | - | chr5.4:12641469-12641488 | None:intergenic | 40.0% | |
| GTTTGGGCAAGTATTAAAGC+AGG | + | chr5.4:12640870-12640889 | MS.gene59394:CDS | 40.0% | |
| TATATCACCCTGCAGATTCA+AGG | - | chr5.4:12641094-12641113 | None:intergenic | 40.0% | |
| TATGTAACTGAGGCTGATGT+GGG | + | chr5.4:12641693-12641712 | MS.gene59394:CDS | 40.0% | |
| TCTAACCGTCAAAGGAGTTA+TGG | - | chr5.4:12641291-12641310 | None:intergenic | 40.0% | |
| TGGCAACAAAGGTAAGTGTA+AGG | - | chr5.4:12641480-12641499 | None:intergenic | 40.0% | |
| ! | GCTCTTTGGGAGAAAAAGAT+TGG | + | chr5.4:12641813-12641832 | MS.gene59394:CDS | 40.0% |
| ! | TTCAGGAGCATATGTAACTG+AGG | + | chr5.4:12641683-12641702 | MS.gene59394:intron | 40.0% |
| !! | GACAGCTTTGTTCAATGTGT+TGG | - | chr5.4:12641748-12641767 | None:intergenic | 40.0% |
| !! | TTTGGCTTGTTAACATTGCC+AGG | - | chr5.4:12640927-12640946 | None:intergenic | 40.0% |
| ACGTCTAGCCCAAATTCAGA+TGG | - | chr5.4:12641372-12641391 | None:intergenic | 45.0% | |
| AGAATGACAACTTTGTCCCG+AGG | - | chr5.4:12641558-12641577 | None:intergenic | 45.0% | |
| AGCTGCTAATCCTGAAACCA+AGG | + | chr5.4:12640956-12640975 | MS.gene59394:CDS | 45.0% | |
| CGGGACAAAGTTGTCATTCT+TGG | + | chr5.4:12641558-12641577 | MS.gene59394:CDS | 45.0% | |
| CGTCTAGCCCAAATTCAGAT+GGG | - | chr5.4:12641371-12641390 | None:intergenic | 45.0% | |
| GAAGCTTCAATATCCTTGGC+TGG | - | chr5.4:12642145-12642164 | None:intergenic | 45.0% | |
| GATATTGTGATCTGTGCTGC+TGG | + | chr5.4:12641153-12641172 | MS.gene59394:CDS | 45.0% | |
| GTATGAGATTGATCCAGCCA+AGG | + | chr5.4:12642129-12642148 | MS.gene59394:CDS | 45.0% | |
| ! | ATCTGAATTTGGGCTAGACG+TGG | + | chr5.4:12641371-12641390 | MS.gene59394:CDS | 45.0% |
| ! | GGGATCATTTGCTGCTCTAA+TGG | - | chr5.4:12641727-12641746 | None:intergenic | 45.0% |
| AGAAGTAACCCGTAAAGGCG+TGG | - | chr5.4:12641500-12641519 | None:intergenic | 50.0% | |
| ATCCTCATCCTAGGACCAAC+AGG | + | chr5.4:12640828-12640847 | MS.gene59394:CDS | 50.0% | |
| ATGACAACTTTGTCCCGAGG+AGG | - | chr5.4:12641555-12641574 | None:intergenic | 50.0% | |
| CCTTTGTTGCCACGCCTTTA+CGG | + | chr5.4:12641488-12641507 | MS.gene59394:CDS | 50.0% | |
| CTTTGTTGCCACGCCTTTAC+GGG | + | chr5.4:12641489-12641508 | MS.gene59394:CDS | 50.0% | |
| GCAGTGGTGTATGTCACATC+TGG | - | chr5.4:12642178-12642197 | None:intergenic | 50.0% | |
| TGTCTTCCAATGGCTCCTGT+TGG | - | chr5.4:12640846-12640865 | None:intergenic | 50.0% | |
| CAATGGCTCCTGTTGGTCCT+AGG | - | chr5.4:12640839-12640858 | None:intergenic | 55.0% | |
| CTAGGACCAACAGGAGCCAT+TGG | + | chr5.4:12640837-12640856 | MS.gene59394:CDS | 55.0% | |
| CTCCTGTTGGTCCTAGGATG+AGG | - | chr5.4:12640833-12640852 | None:intergenic | 55.0% | |
| CTGGCTCAACTGCCTCATGA+CGG | - | chr5.4:12641398-12641417 | None:intergenic | 55.0% | |
| TCGACGCAACTGATCCTCCT+CGG | + | chr5.4:12641538-12641557 | MS.gene59394:CDS | 55.0% | |
| ! | CCGTAAAGGCGTGGCAACAA+AGG | - | chr5.4:12641491-12641510 | None:intergenic | 55.0% |
| CGACGCAACTGATCCTCCTC+GGG | + | chr5.4:12641539-12641558 | MS.gene59394:CDS | 60.0% | |
| GCTAGACGTGGACCGTCATG+AGG | + | chr5.4:12641383-12641402 | MS.gene59394:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12640810 | 12642225 | 12640810 | ID=MS.gene59394 |
| chr5.4 | mRNA | 12640810 | 12642225 | 12640810 | ID=MS.gene59394.t1;Parent=MS.gene59394 |
| chr5.4 | exon | 12640810 | 12641025 | 12640810 | ID=MS.gene59394.t1.exon1;Parent=MS.gene59394.t1 |
| chr5.4 | CDS | 12640810 | 12641025 | 12640810 | ID=cds.MS.gene59394.t1;Parent=MS.gene59394.t1 |
| chr5.4 | exon | 12641105 | 12641239 | 12641105 | ID=MS.gene59394.t1.exon2;Parent=MS.gene59394.t1 |
| chr5.4 | CDS | 12641105 | 12641239 | 12641105 | ID=cds.MS.gene59394.t1;Parent=MS.gene59394.t1 |
| chr5.4 | exon | 12641360 | 12641597 | 12641360 | ID=MS.gene59394.t1.exon3;Parent=MS.gene59394.t1 |
| chr5.4 | CDS | 12641360 | 12641597 | 12641360 | ID=cds.MS.gene59394.t1;Parent=MS.gene59394.t1 |
| chr5.4 | exon | 12641688 | 12641891 | 12641688 | ID=MS.gene59394.t1.exon4;Parent=MS.gene59394.t1 |
| chr5.4 | CDS | 12641688 | 12641891 | 12641688 | ID=cds.MS.gene59394.t1;Parent=MS.gene59394.t1 |
| chr5.4 | exon | 12642062 | 12642225 | 12642062 | ID=MS.gene59394.t1.exon5;Parent=MS.gene59394.t1 |
| chr5.4 | CDS | 12642062 | 12642225 | 12642062 | ID=cds.MS.gene59394.t1;Parent=MS.gene59394.t1 |
| Gene Sequence |
| Protein sequence |
