Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60307.t1 | XP_013457864.1 | 97.1 | 1238 | 36 | 0 | 1 | 1238 | 1 | 1238 | 0.00E+00 | 2409.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60307.t1 | F4IDY5 | 48.1 | 1262 | 590 | 17 | 1 | 1238 | 1 | 1221 | 2.6e-312 | 1072.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60307.t1 | A0A072V1D4 | 97.1 | 1238 | 36 | 0 | 1 | 1238 | 1 | 1238 | 0.0e+00 | 2409.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049222 | MS.gene60307 | -0.818684 | 1.72E-52 | -1.69E-46 |
MS.gene049274 | MS.gene60307 | 0.813737 | 2.20E-51 | -1.69E-46 |
MS.gene04932 | MS.gene60307 | 0.826184 | 3.12E-54 | -1.69E-46 |
MS.gene049611 | MS.gene60307 | 0.812963 | 3.25E-51 | -1.69E-46 |
MS.gene049805 | MS.gene60307 | -0.807515 | 4.87E-50 | -1.69E-46 |
MS.gene050444 | MS.gene60307 | -0.861624 | 9.00E-64 | -1.69E-46 |
MS.gene050710 | MS.gene60307 | 0.822871 | 1.88E-53 | -1.69E-46 |
MS.gene05079 | MS.gene60307 | 0.810118 | 1.35E-50 | -1.69E-46 |
MS.gene050809 | MS.gene60307 | 0.858117 | 1.03E-62 | -1.69E-46 |
MS.gene05104 | MS.gene60307 | 0.818018 | 2.44E-52 | -1.69E-46 |
MS.gene051552 | MS.gene60307 | 0.80784 | 4.15E-50 | -1.69E-46 |
MS.gene051632 | MS.gene60307 | 0.807659 | 4.54E-50 | -1.69E-46 |
MS.gene051666 | MS.gene60307 | -0.820404 | 6.98E-53 | -1.69E-46 |
MS.gene051907 | MS.gene60307 | 0.814226 | 1.72E-51 | -1.69E-46 |
MS.gene052129 | MS.gene60307 | 0.818008 | 2.45E-52 | -1.69E-46 |
MS.gene052379 | MS.gene60307 | -0.804964 | 1.68E-49 | -1.69E-46 |
MS.gene05240 | MS.gene60307 | 0.800786 | 1.22E-48 | -1.69E-46 |
MS.gene05244 | MS.gene60307 | 0.809954 | 1.47E-50 | -1.69E-46 |
MS.gene052702 | MS.gene60307 | 0.84694 | 1.58E-59 | -1.69E-46 |
MS.gene052805 | MS.gene60307 | 0.806069 | 9.84E-50 | -1.69E-46 |
MS.gene053104 | MS.gene60307 | -0.808614 | 2.84E-50 | -1.69E-46 |
MS.gene053108 | MS.gene60307 | 0.811956 | 5.40E-51 | -1.69E-46 |
MS.gene053421 | MS.gene60307 | 0.81656 | 5.19E-52 | -1.69E-46 |
MS.gene053632 | MS.gene60307 | -0.820888 | 5.41E-53 | -1.69E-46 |
MS.gene053776 | MS.gene60307 | 0.831352 | 1.75E-55 | -1.69E-46 |
MS.gene053916 | MS.gene60307 | -0.807414 | 5.11E-50 | -1.69E-46 |
MS.gene053920 | MS.gene60307 | 0.805546 | 1.27E-49 | -1.69E-46 |
MS.gene054290 | MS.gene60307 | 0.859036 | 5.46E-63 | -1.69E-46 |
MS.gene054706 | MS.gene60307 | 0.823819 | 1.13E-53 | -1.69E-46 |
MS.gene054742 | MS.gene60307 | 0.824456 | 7.99E-54 | -1.69E-46 |
MS.gene054965 | MS.gene60307 | 0.802168 | 6.38E-49 | -1.69E-46 |
MS.gene055206 | MS.gene60307 | -0.818626 | 1.78E-52 | -1.69E-46 |
MS.gene055502 | MS.gene60307 | -0.812876 | 3.40E-51 | -1.69E-46 |
MS.gene055577 | MS.gene60307 | -0.801672 | 8.06E-49 | -1.69E-46 |
MS.gene056330 | MS.gene60307 | 0.81097 | 8.85E-51 | -1.69E-46 |
MS.gene056590 | MS.gene60307 | 0.830069 | 3.61E-55 | -1.69E-46 |
MS.gene056591 | MS.gene60307 | 0.829583 | 4.75E-55 | -1.69E-46 |
MS.gene056678 | MS.gene60307 | 0.802599 | 5.20E-49 | -1.69E-46 |
MS.gene056688 | MS.gene60307 | 0.842773 | 2.11E-58 | -1.69E-46 |
MS.gene056697 | MS.gene60307 | 0.827304 | 1.68E-54 | -1.69E-46 |
MS.gene056856 | MS.gene60307 | 0.835802 | 1.36E-56 | -1.69E-46 |
MS.gene056903 | MS.gene60307 | -0.802744 | 4.85E-49 | -1.69E-46 |
MS.gene056920 | MS.gene60307 | 0.800442 | 1.44E-48 | -1.69E-46 |
MS.gene057544 | MS.gene60307 | 0.817932 | 2.55E-52 | -1.69E-46 |
MS.gene057658 | MS.gene60307 | -0.803013 | 4.27E-49 | -1.69E-46 |
MS.gene057717 | MS.gene60307 | 0.82787 | 1.23E-54 | -1.69E-46 |
MS.gene058067 | MS.gene60307 | 0.804364 | 2.24E-49 | -1.69E-46 |
MS.gene058158 | MS.gene60307 | 0.868433 | 6.55E-66 | -1.69E-46 |
MS.gene058416 | MS.gene60307 | 0.804656 | 1.95E-49 | -1.69E-46 |
MS.gene058418 | MS.gene60307 | 0.810762 | 9.81E-51 | -1.69E-46 |
MS.gene058544 | MS.gene60307 | -0.805582 | 1.25E-49 | -1.69E-46 |
MS.gene058603 | MS.gene60307 | 0.813535 | 2.44E-51 | -1.69E-46 |
MS.gene058838 | MS.gene60307 | -0.811248 | 7.70E-51 | -1.69E-46 |
MS.gene05926 | MS.gene60307 | 0.836756 | 7.76E-57 | -1.69E-46 |
MS.gene05934 | MS.gene60307 | -0.818272 | 2.14E-52 | -1.69E-46 |
MS.gene060405 | MS.gene60307 | 0.856364 | 3.38E-62 | -1.69E-46 |
MS.gene060762 | MS.gene60307 | -0.802505 | 5.44E-49 | -1.69E-46 |
MS.gene061041 | MS.gene60307 | -0.841428 | 4.78E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60307.t1 | MTR_4g107440 | 97.014 | 1239 | 37 | 0 | 1 | 1239 | 1 | 1239 | 0.0 | 2491 |
MS.gene60307.t1 | MTR_6g083900 | 34.046 | 1263 | 673 | 26 | 29 | 1238 | 36 | 1191 | 0.0 | 650 |
MS.gene60307.t1 | MTR_8g104410 | 56.028 | 282 | 123 | 1 | 958 | 1238 | 684 | 965 | 3.74e-103 | 352 |
MS.gene60307.t1 | MTR_8g104410 | 43.568 | 241 | 122 | 3 | 609 | 835 | 405 | 645 | 1.21e-51 | 199 |
MS.gene60307.t1 | MTR_8g104410 | 30.622 | 209 | 136 | 3 | 301 | 506 | 66 | 268 | 9.88e-17 | 86.7 |
MS.gene60307.t1 | MTR_8g104410 | 24.345 | 267 | 170 | 8 | 603 | 859 | 52 | 296 | 4.36e-14 | 77.8 |
MS.gene60307.t1 | MTR_8g104410 | 27.039 | 233 | 133 | 7 | 38 | 240 | 416 | 641 | 1.42e-12 | 73.2 |
MS.gene60307.t1 | MTR_8g104410 | 24.286 | 210 | 145 | 5 | 38 | 243 | 69 | 268 | 2.52e-12 | 72.0 |
MS.gene60307.t1 | MTR_8g104410 | 56.028 | 282 | 123 | 1 | 958 | 1238 | 920 | 1201 | 1.66e-102 | 354 |
MS.gene60307.t1 | MTR_8g104410 | 33.269 | 517 | 313 | 8 | 2 | 506 | 8 | 504 | 9.40e-68 | 251 |
MS.gene60307.t1 | MTR_8g104410 | 43.568 | 241 | 122 | 3 | 609 | 835 | 641 | 881 | 3.35e-51 | 198 |
MS.gene60307.t1 | MTR_8g104410 | 27.273 | 220 | 138 | 6 | 620 | 837 | 40 | 239 | 4.28e-17 | 87.8 |
MS.gene60307.t1 | MTR_8g104410 | 24.345 | 267 | 170 | 8 | 603 | 859 | 288 | 532 | 8.62e-14 | 77.0 |
MS.gene60307.t1 | MTR_8g104410 | 27.039 | 233 | 133 | 7 | 38 | 240 | 652 | 877 | 1.65e-12 | 72.8 |
MS.gene60307.t1 | MTR_2g020040 | 38.140 | 215 | 116 | 6 | 1034 | 1236 | 16 | 225 | 6.52e-42 | 155 |
MS.gene60307.t1 | MTR_1g047740 | 33.607 | 244 | 137 | 7 | 1013 | 1236 | 26 | 264 | 4.87e-40 | 151 |
MS.gene60307.t1 | MTR_4g057310 | 37.327 | 217 | 116 | 7 | 1034 | 1236 | 16 | 226 | 5.40e-40 | 150 |
MS.gene60307.t1 | MTR_3g108240 | 34.400 | 250 | 136 | 7 | 1011 | 1237 | 29 | 273 | 8.03e-40 | 150 |
MS.gene60307.t1 | MTR_3g108240 | 33.208 | 265 | 154 | 8 | 991 | 1237 | 12 | 271 | 4.14e-38 | 145 |
MS.gene60307.t1 | MTR_4g057310 | 37.864 | 206 | 108 | 7 | 1034 | 1225 | 19 | 218 | 7.74e-38 | 142 |
MS.gene60307.t1 | MTR_7g102990 | 35.023 | 217 | 121 | 7 | 1034 | 1236 | 22 | 232 | 5.02e-37 | 142 |
MS.gene60307.t1 | MTR_7g102990 | 36.571 | 175 | 92 | 6 | 1034 | 1195 | 22 | 190 | 6.75e-31 | 122 |
MS.gene60307.t1 | MTR_1g010150 | 33.529 | 170 | 104 | 5 | 1068 | 1233 | 1 | 165 | 2.87e-24 | 102 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60307.t1 | AT1G74770 | 48.651 | 1260 | 593 | 21 | 1 | 1239 | 1 | 1227 | 0.0 | 1115 |
MS.gene60307.t1 | AT1G18910 | 47.946 | 1266 | 588 | 19 | 1 | 1239 | 1 | 1222 | 0.0 | 1111 |
MS.gene60307.t1 | AT1G74770 | 48.187 | 1241 | 589 | 21 | 1 | 1220 | 1 | 1208 | 0.0 | 1083 |
MS.gene60307.t1 | AT3G18290 | 31.941 | 886 | 525 | 16 | 37 | 863 | 53 | 919 | 3.93e-122 | 410 |
MS.gene60307.t1 | AT3G18290 | 55.160 | 281 | 126 | 0 | 958 | 1238 | 928 | 1208 | 2.27e-104 | 360 |
MS.gene60307.t1 | AT3G18290 | 23.984 | 246 | 162 | 6 | 613 | 853 | 44 | 269 | 4.60e-14 | 78.2 |
MS.gene60307.t1 | AT3G62970 | 37.500 | 240 | 126 | 8 | 1007 | 1233 | 11 | 239 | 1.96e-42 | 156 |
MS.gene60307.t1 | AT3G62970 | 37.500 | 240 | 126 | 8 | 1007 | 1233 | 11 | 239 | 1.01e-41 | 155 |
MS.gene60307.t1 | AT3G62970 | 38.596 | 228 | 116 | 8 | 1007 | 1221 | 11 | 227 | 1.61e-41 | 153 |
MS.gene60307.t1 | AT5G22920 | 39.234 | 209 | 109 | 6 | 1034 | 1229 | 25 | 228 | 3.39e-40 | 149 |
MS.gene60307.t1 | AT5G22920 | 39.234 | 209 | 109 | 6 | 1034 | 1229 | 25 | 228 | 7.98e-40 | 150 |
MS.gene60307.t1 | AT5G25560 | 35.874 | 223 | 123 | 7 | 1034 | 1243 | 61 | 276 | 4.84e-38 | 145 |
MS.gene60307.t1 | AT5G25560 | 35.874 | 223 | 123 | 7 | 1034 | 1243 | 61 | 276 | 4.84e-38 | 145 |
MS.gene60307.t1 | AT5G25560 | 35.874 | 223 | 123 | 7 | 1034 | 1243 | 61 | 276 | 4.84e-38 | 145 |
MS.gene60307.t1 | AT5G25560 | 35.874 | 223 | 123 | 7 | 1034 | 1243 | 61 | 276 | 4.84e-38 | 145 |
MS.gene60307.t1 | AT5G18650 | 35.849 | 212 | 119 | 6 | 1034 | 1233 | 16 | 222 | 1.03e-36 | 140 |
MS.gene60307.t1 | AT5G25560 | 34.335 | 233 | 123 | 8 | 1034 | 1243 | 61 | 286 | 4.38e-36 | 140 |
MS.gene60307.t1 | AT5G25560 | 34.862 | 218 | 122 | 7 | 1039 | 1243 | 61 | 271 | 1.86e-34 | 135 |
Find 228 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCTCTTCTGACAAATATT+TGG | 0.159497 | 8.2:+18587455 | None:intergenic |
TTCTTTCAAATCTTTCTTAA+TGG | 0.165016 | 8.2:+18589872 | None:intergenic |
CTCATACTTGCTCACACTTT+TGG | 0.185809 | 8.2:+18588328 | None:intergenic |
AACCACAACAAGGGCATTTA+TGG | 0.207892 | 8.2:+18582358 | None:intergenic |
TTGTCCTATTCCTCATCTTC+TGG | 0.209206 | 8.2:-18588353 | MS.gene60307:CDS |
AATATCAGGTCAATTGGTTT+TGG | 0.241534 | 8.2:+18588188 | None:intergenic |
GAGAAGAATTCTCTAATTAT+AGG | 0.251609 | 8.2:+18587738 | None:intergenic |
ACTTATCCAGCTAAAATTCT+TGG | 0.265565 | 8.2:-18589784 | MS.gene60307:CDS |
CTAATAAGAAATTCCGGTTC+TGG | 0.275911 | 8.2:-18589831 | MS.gene60307:CDS |
ACTTCCTCCAGCAACATTAT+AGG | 0.279336 | 8.2:+18590325 | None:intergenic |
CAAGGCTATTAAGAAAGATT+TGG | 0.279486 | 8.2:-18588156 | MS.gene60307:CDS |
TGGTTCCGCATCGGTTATTC+AGG | 0.281471 | 8.2:-18588524 | MS.gene60307:CDS |
TCATATAACTCTAGTGTTAT+AGG | 0.281765 | 8.2:+18582335 | None:intergenic |
AGATTAAAGTTCTCCATCTT+TGG | 0.282699 | 8.2:-18589902 | MS.gene60307:CDS |
CTGATGTCCTCATCATTTAC+AGG | 0.283854 | 8.2:-18589761 | MS.gene60307:intron |
CCAAGTGACTTGCTACATAT+TGG | 0.304623 | 8.2:+18584151 | None:intergenic |
TAGTCAGAAGATCTCTTCTA+TGG | 0.308744 | 8.2:-18585997 | MS.gene60307:CDS |
AATCAGTAGTAGAAACTAAA+AGG | 0.319009 | 8.2:+18587883 | None:intergenic |
GTGCATCTAACATCCTAAAA+AGG | 0.326071 | 8.2:+18582582 | None:intergenic |
CTGCAGTTCTTTCTAAAGAT+AGG | 0.327534 | 8.2:+18588728 | None:intergenic |
GATTTGGATTACCTGGTTCT+TGG | 0.328945 | 8.2:-18588140 | MS.gene60307:CDS |
ACCGCGAGGAAATAGAAATT+TGG | 0.329639 | 8.2:-18587761 | MS.gene60307:CDS |
GTTAGAGGGGCATGATGATT+TGG | 0.339167 | 8.2:-18588108 | MS.gene60307:CDS |
CAAGAGGAACTGTAAGCTTT+TGG | 0.340400 | 8.2:-18585883 | MS.gene60307:CDS |
AGATCCTTCCTTATCGGATA+TGG | 0.341556 | 8.2:-18594116 | MS.gene60307:CDS |
ATGCCGAGTTGGAAAGGGTT+TGG | 0.341833 | 8.2:-18584463 | MS.gene60307:CDS |
TGCCGAGTTGGAAAGGGTTT+GGG | 0.344960 | 8.2:-18584462 | MS.gene60307:CDS |
TCTTGGCTCATCTCAGTTAG+AGG | 0.346802 | 8.2:-18588123 | MS.gene60307:CDS |
CTATGATCTTCCCTTGCTTC+CGG | 0.347398 | 8.2:+18587712 | None:intergenic |
GGATCCAGAAGATGAGGAAT+AGG | 0.349817 | 8.2:+18588349 | None:intergenic |
TTGGTCCGAGTTCATTCAAT+AGG | 0.354396 | 8.2:-18589992 | MS.gene60307:CDS |
GGAAATAGTGTTCCCAGCTT+TGG | 0.358463 | 8.2:-18588018 | MS.gene60307:CDS |
AGCATGAAGTTGGTTGCAAC+AGG | 0.361074 | 8.2:+18585857 | None:intergenic |
CCTCCGCATCACTATGGATT+TGG | 0.369354 | 8.2:+18588042 | None:intergenic |
GATCCTCATGAACAAATCTA+TGG | 0.370796 | 8.2:-18585918 | MS.gene60307:CDS |
TAGACTTGGAAAGTCGGTTA+TGG | 0.374692 | 8.2:+18589530 | None:intergenic |
TTTCCTCCTCCGCATCACTA+TGG | 0.374978 | 8.2:+18588036 | None:intergenic |
TTTAGAAAGAACTGCAGAAA+TGG | 0.378324 | 8.2:-18588722 | MS.gene60307:CDS |
TAGGATGTTAGATGCACTAT+TGG | 0.386601 | 8.2:-18582576 | MS.gene60307:CDS |
TTGCACCATTGTTGCATGAA+TGG | 0.389848 | 8.2:-18588544 | MS.gene60307:CDS |
CTTTATCTAATAAGAAATTC+CGG | 0.393478 | 8.2:-18589837 | MS.gene60307:CDS |
AAAGATGGAGAACTTTAATC+TGG | 0.397162 | 8.2:+18589904 | None:intergenic |
CTCCTTTATGCAATAGAGAA+TGG | 0.398511 | 8.2:+18588592 | None:intergenic |
TGCTGAAACTGCGTTGTCCT+TGG | 0.399556 | 8.2:-18593951 | MS.gene60307:CDS |
TGGCCTATTGCCTCCAAAGC+TGG | 0.404084 | 8.2:+18588005 | None:intergenic |
TACTACTGATTCAAAGATAA+GGG | 0.407684 | 8.2:-18587871 | MS.gene60307:CDS |
AACTCGGCATAAGTTGCAAT+AGG | 0.411380 | 8.2:+18584476 | None:intergenic |
TACTAAAATGTGTTATAACT+TGG | 0.412883 | 8.2:-18588649 | MS.gene60307:CDS |
ACACTTCTTGGATGAGCTGA+TGG | 0.415060 | 8.2:-18591703 | MS.gene60307:CDS |
ATGCAGAGAGAAATCTTTAG+AGG | 0.416654 | 8.2:-18584376 | MS.gene60307:CDS |
CAAGTGACTTGCTACATATT+GGG | 0.423471 | 8.2:+18584152 | None:intergenic |
CATCAGATCATTTAATTGAC+AGG | 0.426147 | 8.2:-18585812 | MS.gene60307:intron |
ACTATTTCACGGCAACGGTT+TGG | 0.426162 | 8.2:+18593920 | None:intergenic |
CTTAACTTCAGAGCAGTGTC+AGG | 0.426892 | 8.2:+18588266 | None:intergenic |
GATGAGCATGTGGCATTGAT+TGG | 0.431318 | 8.2:+18585648 | None:intergenic |
TAGTGTTCCTATAATGTTGC+TGG | 0.432236 | 8.2:-18590332 | MS.gene60307:CDS |
GCAGATTATCTTCCATGCAC+TGG | 0.432547 | 8.2:-18591802 | MS.gene60307:intron |
TTAGAGAATTCTTCTCGAAC+CGG | 0.433138 | 8.2:-18587731 | MS.gene60307:CDS |
CAATGTTGATGACAATGTTA+AGG | 0.435508 | 8.2:-18587340 | MS.gene60307:CDS |
AGACTTGGAAAGTCGGTTAT+GGG | 0.435699 | 8.2:+18589531 | None:intergenic |
CTTCTTCTTTCAGCATATGT+TGG | 0.438855 | 8.2:+18591607 | None:intergenic |
CTTCAAATATCTTGCAGATC+CGG | 0.440219 | 8.2:+18585586 | None:intergenic |
GTCCATTCTCTATTGCATAA+AGG | 0.444100 | 8.2:-18588594 | MS.gene60307:CDS |
CTACTACTGATTCAAAGATA+AGG | 0.446476 | 8.2:-18587872 | MS.gene60307:CDS |
AGAATACAATGTTTGATGAA+TGG | 0.448565 | 8.2:-18587572 | MS.gene60307:CDS |
CGGAAGCAAGGGAAGATCAT+AGG | 0.451871 | 8.2:-18587711 | MS.gene60307:CDS |
TCTTGCAGTGTTGTTTCCAT+TGG | 0.452534 | 8.2:+18590229 | None:intergenic |
GAATGGGTACAGTATCTCTA+AGG | 0.459714 | 8.2:-18587535 | MS.gene60307:CDS |
CTCTTCCTCCATATCCGATA+AGG | 0.465904 | 8.2:+18594108 | None:intergenic |
TGACTCTTGCCTAGCCCCTC+AGG | 0.466049 | 8.2:-18587106 | MS.gene60307:CDS |
CATGCACTCAACATGTTTCA+AGG | 0.467455 | 8.2:-18584280 | MS.gene60307:intron |
AGATATGATACCTTGGCTAA+TGG | 0.469441 | 8.2:-18587652 | MS.gene60307:CDS |
TAAGGCGTCATCATTTAATC+AGG | 0.470772 | 8.2:-18587836 | MS.gene60307:CDS |
GAAGCTTAACAACTATTTCA+CGG | 0.471904 | 8.2:+18593909 | None:intergenic |
CAATGCAGTACACAAGTTCT+CGG | 0.475451 | 8.2:+18591652 | None:intergenic |
AAATTAATTCCTGTGGAGTA+TGG | 0.476959 | 8.2:+18588302 | None:intergenic |
TACCATAAATGCCCTTGTTG+TGG | 0.478121 | 8.2:-18582360 | MS.gene60307:CDS |
ATTGTCATCAACATTGTTGT+CGG | 0.478504 | 8.2:+18587347 | None:intergenic |
GGTTAGGTGAATGGTGGAAT+GGG | 0.478929 | 8.2:-18587551 | MS.gene60307:CDS |
TTGAATGAACTCGGACCAAA+TGG | 0.479156 | 8.2:+18589996 | None:intergenic |
TTGATGAATGGTTAGGTGAA+TGG | 0.479760 | 8.2:-18587560 | MS.gene60307:CDS |
TTTAATGTTCTTATGGTCCA+TGG | 0.480913 | 8.2:-18587601 | MS.gene60307:CDS |
GCTAATGGCATCTTTAACAC+AGG | 0.481517 | 8.2:-18587637 | MS.gene60307:CDS |
TAATGGCGTTATGCCAAAGA+TGG | 0.482078 | 8.2:+18589889 | None:intergenic |
GAATTTGCTGCATGAAGTCT+TGG | 0.482807 | 8.2:+18588236 | None:intergenic |
ATCCAAATATTTGTCAGAAG+AGG | 0.487452 | 8.2:-18587457 | MS.gene60307:CDS |
AAGATGTATTCATGACAAAT+CGG | 0.488675 | 8.2:+18584345 | None:intergenic |
CACTTCTTGGATGAGCTGAT+GGG | 0.490110 | 8.2:-18591702 | MS.gene60307:CDS |
TTGTAAGATGGATGTTTCCC+AGG | 0.490252 | 8.2:+18585942 | None:intergenic |
CAATATCAAAAGCGATGGAC+AGG | 0.491085 | 8.2:-18585970 | MS.gene60307:CDS |
CTTGGCTCATCTCAGTTAGA+GGG | 0.492451 | 8.2:-18588122 | MS.gene60307:CDS |
AAGTCTACTGAACATTTCCT+TGG | 0.493469 | 8.2:-18589514 | MS.gene60307:CDS |
AGGAGGAGATCCTTCCTTAT+CGG | 0.493689 | 8.2:-18594122 | MS.gene60307:CDS |
AATGACAAAGAAACAGAAGA+TGG | 0.493756 | 8.2:-18589933 | MS.gene60307:CDS |
CAACTTATGCCGAGTTGGAA+AGG | 0.494734 | 8.2:-18584469 | MS.gene60307:CDS |
AACTTATGCCGAGTTGGAAA+GGG | 0.495045 | 8.2:-18584468 | MS.gene60307:CDS |
TGGTTAGGTGAATGGTGGAA+TGG | 0.495588 | 8.2:-18587552 | MS.gene60307:CDS |
TTCCCAGCTTTGGAGGCAAT+AGG | 0.498064 | 8.2:-18588008 | MS.gene60307:CDS |
GGATATGGAGGAAGAGGAGG+AGG | 0.499403 | 8.2:-18594101 | MS.gene60307:CDS |
TAAGAAAGATTTGGATTACC+TGG | 0.500025 | 8.2:-18588147 | MS.gene60307:CDS |
AAGATCATAGGATGCATACT+TGG | 0.504340 | 8.2:-18587699 | MS.gene60307:CDS |
CAAGTTCAGAACGCAGAGCT+TGG | 0.505710 | 8.2:+18593990 | None:intergenic |
AAATTTGTAGAGAAGCTTTG+CGG | 0.506688 | 8.2:-18589424 | MS.gene60307:CDS |
GAGGAACTCCAAGGTTCTCA+TGG | 0.507247 | 8.2:-18590038 | MS.gene60307:CDS |
CACCCAAACCCTTTCCAACT+CGG | 0.508340 | 8.2:+18584460 | None:intergenic |
AGCGATGGACAGGAATTCCC+TGG | 0.510831 | 8.2:-18585960 | MS.gene60307:CDS |
TTCTTCTCGAACCGGAAGCA+AGG | 0.511624 | 8.2:-18587723 | MS.gene60307:CDS |
TAATCAGGAAGCTGCAAGAA+AGG | 0.512537 | 8.2:-18587821 | MS.gene60307:CDS |
ATCTCGAGAAGGTAATAAGA+AGG | 0.514871 | 8.2:-18587137 | MS.gene60307:CDS |
AAGGAAATGTTCAGTAGACT+TGG | 0.518193 | 8.2:+18589516 | None:intergenic |
AAGGAGCAGCTCCCTTCCAC+TGG | 0.518592 | 8.2:-18582386 | MS.gene60307:CDS |
CATTGTATTCTTAGTAGCCA+TGG | 0.519388 | 8.2:+18587584 | None:intergenic |
AGAAAATGAAGGAAGCTTGT+GGG | 0.524602 | 8.2:-18588430 | MS.gene60307:CDS |
AATCCATAGTGATGCGGAGG+AGG | 0.526381 | 8.2:-18588039 | MS.gene60307:CDS |
ACTCGGCATAAGTTGCAATA+GGG | 0.529060 | 8.2:+18584477 | None:intergenic |
TGTAATGACTGTGAAAAGAA+AGG | 0.530218 | 8.2:-18582405 | MS.gene60307:CDS |
CCATGGCAAAATATTACTGC+CGG | 0.530351 | 8.2:-18585605 | MS.gene60307:CDS |
CTTATCGGATATGGAGGAAG+AGG | 0.531600 | 8.2:-18594107 | MS.gene60307:CDS |
AATAGTGTTCCCAGCTTTGG+AGG | 0.531830 | 8.2:-18588015 | MS.gene60307:CDS |
TTCTTGCCGCAATTTATCCA+TGG | 0.533441 | 8.2:-18585622 | MS.gene60307:CDS |
AAACATGAAGTTGAGCACTT+TGG | 0.533442 | 8.2:-18587945 | MS.gene60307:CDS |
GGCCTATTGCCTCCAAAGCT+GGG | 0.536547 | 8.2:+18588006 | None:intergenic |
TCATGAGGATCCTTGTAAGA+TGG | 0.537255 | 8.2:+18585930 | None:intergenic |
GCAAGATATTTGAAGATGAA+AGG | 0.537490 | 8.2:-18585578 | MS.gene60307:intron |
CACAAGTTCTCGGAACAGCT+TGG | 0.538274 | 8.2:+18591662 | None:intergenic |
CTGCTTGTTTATCTGCTGAA+AGG | 0.541320 | 8.2:+18590281 | None:intergenic |
AAACAAACGAAGAGAAGTAT+AGG | 0.546504 | 8.2:+18594016 | None:intergenic |
TTGTTTATCTGCTGAAAGGA+AGG | 0.548791 | 8.2:+18590285 | None:intergenic |
TATTGCAACTTATGCCGAGT+TGG | 0.549331 | 8.2:-18584474 | MS.gene60307:CDS |
GTTCAGAACGCAGAGCTTGG+TGG | 0.550240 | 8.2:+18593993 | None:intergenic |
CCAATATGTAGCAAGTCACT+TGG | 0.552811 | 8.2:-18584151 | MS.gene60307:CDS |
ATGACAAAGAAACAGAAGAT+GGG | 0.553658 | 8.2:-18589932 | MS.gene60307:CDS |
GTGGCTCAACATTCTGTAGA+GGG | 0.554576 | 8.2:+18587490 | None:intergenic |
GAGAAAATGAAGGAAGCTTG+TGG | 0.556774 | 8.2:-18588431 | MS.gene60307:CDS |
CTCAATTGAAAAGTTCCGAC+AGG | 0.557534 | 8.2:-18588495 | MS.gene60307:CDS |
TTGAACATAACAGCACCAAT+GGG | 0.557659 | 8.2:-18591743 | MS.gene60307:CDS |
TATGCTGAAAGAAGAAGAGC+AGG | 0.558732 | 8.2:-18591601 | MS.gene60307:intron |
ACAATGTTTGATGAATGGTT+AGG | 0.559976 | 8.2:-18587567 | MS.gene60307:CDS |
GACAACGCAGTTTCAGCAAA+CGG | 0.560323 | 8.2:+18593956 | None:intergenic |
ACAAGACCAACCTCGTAAGT+AGG | 0.560903 | 8.2:+18587061 | None:intergenic |
AGCATGCATATGATGCCACT+TGG | 0.561365 | 8.2:-18588674 | MS.gene60307:CDS |
CAACCATAGATTTGTTCATG+AGG | 0.563332 | 8.2:+18585915 | None:intergenic |
TTTATGGTAAAGCCAGTGGA+AGG | 0.563649 | 8.2:+18582374 | None:intergenic |
CTTGAACATAACAGCACCAA+TGG | 0.564553 | 8.2:-18591744 | MS.gene60307:CDS |
CAAGTCACTTGGAGACATGC+AGG | 0.566640 | 8.2:-18584140 | MS.gene60307:intron |
TTACATGAATATCCAGTGCA+TGG | 0.569347 | 8.2:+18591790 | None:intergenic |
AGTATCTCTAAGGCAGCAGA+TGG | 0.571828 | 8.2:-18587525 | MS.gene60307:CDS |
TGACTTGCTACATATTGGGC+AGG | 0.571852 | 8.2:+18584156 | None:intergenic |
AATGTATGCAAGCATGAAGT+TGG | 0.571867 | 8.2:+18585847 | None:intergenic |
TATTACAAGATATGATACCT+TGG | 0.572140 | 8.2:-18587659 | MS.gene60307:CDS |
TTGCATGAATGGTTCCGCAT+CGG | 0.574198 | 8.2:-18588533 | MS.gene60307:CDS |
CATTCTCTATTGCATAAAGG+AGG | 0.574541 | 8.2:-18588591 | MS.gene60307:CDS |
TCTTCTCGAACCGGAAGCAA+GGG | 0.578277 | 8.2:-18587722 | MS.gene60307:CDS |
CAGCATATGTTGGTAGACTG+AGG | 0.580581 | 8.2:+18591617 | None:intergenic |
AATAGAATCAAACAGCCCAT+TGG | 0.580674 | 8.2:+18591728 | None:intergenic |
TGACTTGTCATAGTGCCCAC+TGG | 0.582686 | 8.2:+18587228 | None:intergenic |
CGGAACCATTCATGCAACAA+TGG | 0.584260 | 8.2:+18588539 | None:intergenic |
TAACAACTATTTCACGGCAA+CGG | 0.584286 | 8.2:+18593915 | None:intergenic |
GTAGGAATCCATGAGAACCT+TGG | 0.584879 | 8.2:+18590030 | None:intergenic |
TATTTGGATATAATTTCTAG+TGG | 0.585996 | 8.2:+18587471 | None:intergenic |
GTTCAGTAGACTTGGAAAGT+CGG | 0.586659 | 8.2:+18589524 | None:intergenic |
AATGATCTGATGCCTCATCA+TGG | 0.588389 | 8.2:+18585823 | None:intergenic |
GGAGGAGGAAAACGATGTCA+TGG | 0.589865 | 8.2:-18594086 | MS.gene60307:CDS |
ATGGTTGCAAACACTACAAG+AGG | 0.590148 | 8.2:-18585899 | MS.gene60307:CDS |
ATGAATGGTTAGGTGAATGG+TGG | 0.590779 | 8.2:-18587557 | MS.gene60307:CDS |
GAAGCCAATATCAAAAGCGA+TGG | 0.591818 | 8.2:-18585975 | MS.gene60307:CDS |
TGGGAAACATCCATCTTACA+AGG | 0.596206 | 8.2:-18585940 | MS.gene60307:CDS |
AATGGAAACAACACTGCAAG+AGG | 0.596748 | 8.2:-18590227 | MS.gene60307:intron |
TATGTGCAAATTAATTCCTG+TGG | 0.596921 | 8.2:+18588295 | None:intergenic |
GCATGGCATGACCACATGGG+AGG | 0.597202 | 8.2:+18584298 | None:intergenic |
TATGCAATAGAGAATGGACC+TGG | 0.598559 | 8.2:+18588598 | None:intergenic |
CATGGCATGACCACATGGGA+GGG | 0.598751 | 8.2:+18584299 | None:intergenic |
AGTGGCTCAACATTCTGTAG+AGG | 0.601367 | 8.2:+18587489 | None:intergenic |
TCCTTCCTTATCGGATATGG+AGG | 0.602235 | 8.2:-18594113 | MS.gene60307:CDS |
GGCATTTATGGTAAAGCCAG+TGG | 0.602434 | 8.2:+18582370 | None:intergenic |
TTGGCTCATCTCAGTTAGAG+GGG | 0.602553 | 8.2:-18588121 | MS.gene60307:CDS |
CTGAAAATATGTCCTAGTGA+AGG | 0.604553 | 8.2:+18590064 | None:intergenic |
TAAGGGACAAGAGAGTGCTA+AGG | 0.607113 | 8.2:-18587854 | MS.gene60307:CDS |
GAGTGCATGGCATGACCACA+TGG | 0.608684 | 8.2:+18584294 | None:intergenic |
GCAAACATCTATGCTCACAT+TGG | 0.610162 | 8.2:+18582307 | None:intergenic |
ACGGTTTGGATCATGTTCCA+AGG | 0.612507 | 8.2:+18593934 | None:intergenic |
ATCGGATATGGAGGAAGAGG+AGG | 0.612689 | 8.2:-18594104 | MS.gene60307:CDS |
AAGCAGCCACATAAAAGTTG+TGG | 0.612852 | 8.2:-18588386 | MS.gene60307:CDS |
CTTGAAACATGTTGAGTGCA+TGG | 0.613846 | 8.2:+18584281 | None:intergenic |
ATGTTTGTGATCAAACGTGT+AGG | 0.613954 | 8.2:+18587962 | None:intergenic |
ACATATGCTGCAAGTCCTGT+CGG | 0.614416 | 8.2:+18588480 | None:intergenic |
TTTCAGAGTGAGGAACTCCA+AGG | 0.615602 | 8.2:-18590047 | MS.gene60307:CDS |
TCCTCCATATCCGATAAGGA+AGG | 0.618279 | 8.2:+18594112 | None:intergenic |
TATGAGACACCATACTCCAC+AGG | 0.618586 | 8.2:-18588311 | MS.gene60307:CDS |
GTTAAAGATGCCATTAGCCA+AGG | 0.619614 | 8.2:+18587642 | None:intergenic |
TGACAAAGAAACAGAAGATG+GGG | 0.619682 | 8.2:-18589931 | MS.gene60307:CDS |
TGTAAGATGGATGTTTCCCA+GGG | 0.620617 | 8.2:+18585943 | None:intergenic |
GTGTTATAGGAACCACAACA+AGG | 0.620988 | 8.2:+18582348 | None:intergenic |
AAGAACAAGCCTCACTTGTG+TGG | 0.624146 | 8.2:-18590366 | MS.gene60307:CDS |
GAAAGGAAGGATACCATCCA+TGG | 0.624285 | 8.2:+18590298 | None:intergenic |
TCATTGCGCTGCTGAAGATG+AGG | 0.625736 | 8.2:-18593849 | MS.gene60307:intron |
CCAAATCCATAGTGATGCGG+AGG | 0.625818 | 8.2:-18588042 | MS.gene60307:CDS |
TAGTTCCTATTGAATGAACT+CGG | 0.626105 | 8.2:+18589987 | None:intergenic |
TCTCGAGAAGGTAATAAGAA+GGG | 0.626715 | 8.2:-18587136 | MS.gene60307:CDS |
ACTGAGATGAGCCAAGAACC+AGG | 0.628393 | 8.2:+18588129 | None:intergenic |
ATTCTCTATTGCATAAAGGA+GGG | 0.628958 | 8.2:-18588590 | MS.gene60307:CDS |
TGCAATGAAGTAAAACCAGT+GGG | 0.629425 | 8.2:-18587243 | MS.gene60307:CDS |
AGTATTACCTGTAAATGATG+AGG | 0.629939 | 8.2:+18589754 | None:intergenic |
GCGATGGACAGGAATTCCCT+GGG | 0.632688 | 8.2:-18585959 | MS.gene60307:CDS |
GCAACAATCAAACCTTCACT+AGG | 0.639654 | 8.2:-18590076 | MS.gene60307:CDS |
TCTTCTGACTAATAATCCAA+CGG | 0.641407 | 8.2:+18586009 | None:intergenic |
AAGGTTCATAATGCAGCACA+AGG | 0.642440 | 8.2:-18587321 | MS.gene60307:CDS |
TTAACTTCAGAGCAGTGTCA+GGG | 0.642545 | 8.2:+18588267 | None:intergenic |
GAGTCAAGATGATCTCGAGA+AGG | 0.643766 | 8.2:-18587148 | MS.gene60307:CDS |
TATGAATTGCCACACAAGTG+AGG | 0.645881 | 8.2:+18590357 | None:intergenic |
GCATGCATATGATGCCACTT+GGG | 0.646181 | 8.2:-18588673 | MS.gene60307:CDS |
TGTTCCTATAATGTTGCTGG+AGG | 0.651755 | 8.2:-18590329 | MS.gene60307:CDS |
CTTCAATGTGACTTTCACCA+AGG | 0.654694 | 8.2:+18589497 | None:intergenic |
GCCAAATTTCTATTTCCTCG+CGG | 0.657500 | 8.2:+18587760 | None:intergenic |
TAATACAGAGCCTACTTACG+AGG | 0.662199 | 8.2:-18587071 | MS.gene60307:intron |
TGTGATCAAACGTGTAGGCA+TGG | 0.665004 | 8.2:+18587967 | None:intergenic |
TTATGGTAAAGCCAGTGGAA+GGG | 0.665469 | 8.2:+18582375 | None:intergenic |
CTGCAATGAAGTAAAACCAG+TGG | 0.669462 | 8.2:-18587244 | MS.gene60307:CDS |
AAATACAGAGAAGCTAGGAG+AGG | 0.672093 | 8.2:+18582285 | None:intergenic |
GCATGAAGTTGGTTGCAACA+GGG | 0.676231 | 8.2:+18585858 | None:intergenic |
TCACCAAATCCATAGTGATG+CGG | 0.678375 | 8.2:-18588045 | MS.gene60307:CDS |
TGGCTCAACATTCTGTAGAG+GGG | 0.680577 | 8.2:+18587491 | None:intergenic |
TTGCATACATTGCCATGATG+AGG | 0.681585 | 8.2:-18585835 | MS.gene60307:CDS |
GCAAGAAAATGATGAGCATG+TGG | 0.689307 | 8.2:+18585638 | None:intergenic |
CCAGTAAAAGCCCTCCCATG+TGG | 0.690306 | 8.2:-18584309 | MS.gene60307:CDS |
TGTTATAGGAACCACAACAA+GGG | 0.694348 | 8.2:+18582349 | None:intergenic |
TTCTGATCATATAAACCGCG+AGG | 0.701161 | 8.2:-18587775 | MS.gene60307:CDS |
AGTGCATGGCATGACCACAT+GGG | 0.787322 | 8.2:+18584295 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 18582298 | 18594149 | 18582298 | ID=MS.gene60307 |
chr8.2 | mRNA | 18582298 | 18594149 | 18582298 | ID=MS.gene60307.t1;Parent=MS.gene60307 |
chr8.2 | exon | 18593850 | 18594149 | 18593850 | ID=MS.gene60307.t1.exon1;Parent=MS.gene60307.t1 |
chr8.2 | CDS | 18593850 | 18594149 | 18593850 | ID=cds.MS.gene60307.t1;Parent=MS.gene60307.t1 |
chr8.2 | exon | 18591602 | 18591820 | 18591602 | ID=MS.gene60307.t1.exon2;Parent=MS.gene60307.t1 |
chr8.2 | CDS | 18591602 | 18591820 | 18591602 | ID=cds.MS.gene60307.t1;Parent=MS.gene60307.t1 |
chr8.2 | exon | 18590228 | 18590422 | 18590228 | ID=MS.gene60307.t1.exon3;Parent=MS.gene60307.t1 |
chr8.2 | CDS | 18590228 | 18590422 | 18590228 | ID=cds.MS.gene60307.t1;Parent=MS.gene60307.t1 |
chr8.2 | exon | 18589762 | 18590120 | 18589762 | ID=MS.gene60307.t1.exon4;Parent=MS.gene60307.t1 |
chr8.2 | CDS | 18589762 | 18590120 | 18589762 | ID=cds.MS.gene60307.t1;Parent=MS.gene60307.t1 |
chr8.2 | exon | 18589366 | 18589597 | 18589366 | ID=MS.gene60307.t1.exon5;Parent=MS.gene60307.t1 |
chr8.2 | CDS | 18589366 | 18589597 | 18589366 | ID=cds.MS.gene60307.t1;Parent=MS.gene60307.t1 |
chr8.2 | exon | 18587072 | 18588756 | 18587072 | ID=MS.gene60307.t1.exon6;Parent=MS.gene60307.t1 |
chr8.2 | CDS | 18587072 | 18588756 | 18587072 | ID=cds.MS.gene60307.t1;Parent=MS.gene60307.t1 |
chr8.2 | exon | 18585813 | 18586031 | 18585813 | ID=MS.gene60307.t1.exon7;Parent=MS.gene60307.t1 |
chr8.2 | CDS | 18585813 | 18586031 | 18585813 | ID=cds.MS.gene60307.t1;Parent=MS.gene60307.t1 |
chr8.2 | exon | 18585579 | 18585716 | 18585579 | ID=MS.gene60307.t1.exon8;Parent=MS.gene60307.t1 |
chr8.2 | CDS | 18585579 | 18585716 | 18585579 | ID=cds.MS.gene60307.t1;Parent=MS.gene60307.t1 |
chr8.2 | exon | 18584281 | 18584515 | 18584281 | ID=MS.gene60307.t1.exon9;Parent=MS.gene60307.t1 |
chr8.2 | CDS | 18584281 | 18584515 | 18584281 | ID=cds.MS.gene60307.t1;Parent=MS.gene60307.t1 |
chr8.2 | exon | 18584141 | 18584200 | 18584141 | ID=MS.gene60307.t1.exon10;Parent=MS.gene60307.t1 |
chr8.2 | CDS | 18584141 | 18584200 | 18584141 | ID=cds.MS.gene60307.t1;Parent=MS.gene60307.t1 |
chr8.2 | exon | 18582524 | 18582606 | 18582524 | ID=MS.gene60307.t1.exon11;Parent=MS.gene60307.t1 |
chr8.2 | CDS | 18582524 | 18582606 | 18582524 | ID=cds.MS.gene60307.t1;Parent=MS.gene60307.t1 |
chr8.2 | exon | 18582298 | 18582436 | 18582298 | ID=MS.gene60307.t1.exon12;Parent=MS.gene60307.t1 |
chr8.2 | CDS | 18582298 | 18582436 | 18582298 | ID=cds.MS.gene60307.t1;Parent=MS.gene60307.t1 |
Gene Sequence |
Protein sequence |