Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61494.t1 | RHN63924.1 | 96.9 | 194 | 6 | 0 | 1 | 194 | 1 | 194 | 1.10E-105 | 392.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61494.t1 | A0A396IHY1 | 96.9 | 194 | 6 | 0 | 1 | 194 | 1 | 194 | 8.2e-106 | 392.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene61494 | 0.804723 | 1.88E-49 | -1.69E-46 |
| MS.gene049159 | MS.gene61494 | 0.821965 | 3.05E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene61494 | 0.815225 | 1.03E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene61494 | 0.807437 | 5.06E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene61494 | 0.855598 | 5.67E-62 | -1.69E-46 |
| MS.gene050654 | MS.gene61494 | 0.815254 | 1.02E-51 | -1.69E-46 |
| MS.gene050941 | MS.gene61494 | 0.821589 | 3.73E-53 | -1.69E-46 |
| MS.gene051363 | MS.gene61494 | 0.832998 | 6.86E-56 | -1.69E-46 |
| MS.gene051365 | MS.gene61494 | 0.818679 | 1.73E-52 | -1.69E-46 |
| MS.gene052518 | MS.gene61494 | 0.807335 | 5.31E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene61494 | 0.801867 | 7.35E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene61494 | 0.822539 | 2.24E-53 | -1.69E-46 |
| MS.gene053008 | MS.gene61494 | 0.83629 | 1.02E-56 | -1.69E-46 |
| MS.gene053226 | MS.gene61494 | 0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene61494 | 0.816152 | 6.41E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene61494 | 0.813005 | 3.19E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene61494 | 0.826853 | 2.16E-54 | -1.69E-46 |
| MS.gene055513 | MS.gene61494 | 0.812291 | 4.56E-51 | -1.69E-46 |
| MS.gene055841 | MS.gene61494 | 0.807086 | 6.00E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene61494 | 0.814221 | 1.72E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene61494 | 0.812542 | 4.02E-51 | -1.69E-46 |
| MS.gene056834 | MS.gene61494 | 0.80816 | 3.55E-50 | -1.69E-46 |
| MS.gene05690 | MS.gene61494 | 0.803235 | 3.84E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene61494 | 0.802878 | 4.55E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene61494 | 0.848402 | 6.27E-60 | -1.69E-46 |
| MS.gene057855 | MS.gene61494 | 0.802231 | 6.19E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene61494 | 0.804467 | 2.13E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene61494 | 0.820571 | 6.39E-53 | -1.69E-46 |
| MS.gene058781 | MS.gene61494 | 0.820286 | 7.43E-53 | -1.69E-46 |
| MS.gene058783 | MS.gene61494 | 0.840004 | 1.13E-57 | -1.69E-46 |
| MS.gene058979 | MS.gene61494 | 0.807212 | 5.64E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene61494 | 0.810115 | 1.35E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene61494 | 0.845744 | 3.36E-59 | -1.69E-46 |
| MS.gene060937 | MS.gene61494 | 0.829317 | 5.51E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61494.t1 | MTR_4g114105 | 96.703 | 182 | 6 | 0 | 13 | 194 | 1 | 182 | 2.71e-131 | 366 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61494.t1 | AT5G20120 | 63.736 | 182 | 60 | 2 | 13 | 194 | 13 | 188 | 3.51e-70 | 211 |
| MS.gene61494.t1 | AT5G20120 | 63.736 | 182 | 60 | 2 | 13 | 194 | 13 | 188 | 3.51e-70 | 211 |
Find 45 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTGCTTTGTGGCCAATT+TGG | 0.157438 | 8.3:-13300342 | MS.gene61494:CDS |
| TTTCTTGACGATTCCTCTTC+TGG | 0.249847 | 8.3:-13300317 | MS.gene61494:intron |
| CTAGGTTCACCTTTGCTTTG+TGG | 0.328652 | 8.3:-13300351 | MS.gene61494:intron |
| GCACAGGAGATATATGAAAT+TGG | 0.329409 | 8.3:+13301643 | None:intergenic |
| TGCCTCCGAGTCCTCCTAAA+AGG | 0.336735 | 8.3:-13301742 | MS.gene61494:CDS |
| TGTGCAGTTTACACTATTCA+TGG | 0.346494 | 8.3:-13300193 | MS.gene61494:intron |
| ATCAGTTGCATTGCAATGTC+TGG | 0.346771 | 8.3:-13301875 | None:intergenic |
| CCTCTATATCTTGGGATGAT+AGG | 0.347964 | 8.3:-13300617 | MS.gene61494:CDS |
| TGCAGACTGCCTCTATATCT+TGG | 0.356363 | 8.3:-13300626 | MS.gene61494:intron |
| TTGCCATTCGCCACTGGATT+CGG | 0.365198 | 8.3:-13300482 | MS.gene61494:CDS |
| GGAACACCGGTTGGGGCAGG+TGG | 0.367107 | 8.3:-13301851 | MS.gene61494:CDS |
| TTTCATTTATACAAGTATCT+TGG | 0.379944 | 8.3:-13300573 | MS.gene61494:CDS |
| TATCTTGGGATGATAGGTAT+TGG | 0.427837 | 8.3:-13300611 | MS.gene61494:CDS |
| AATGAGGCAGAGACATAGCC+AGG | 0.433939 | 8.3:-13301825 | MS.gene61494:CDS |
| GTTTGTTTCTTACAAGCAAA+AGG | 0.450655 | 8.3:+13300451 | None:intergenic |
| ATCGTCAAGAAACTCCAAAT+TGG | 0.465863 | 8.3:+13300328 | None:intergenic |
| TTTATACAAGTATCTTGGCT+TGG | 0.469511 | 8.3:-13300568 | MS.gene61494:CDS |
| GCAGACTGCCTCTATATCTT+GGG | 0.469604 | 8.3:-13300625 | MS.gene61494:intron |
| AAAATGGGGATTAAAGAAAT+GGG | 0.471320 | 8.3:-13300525 | MS.gene61494:CDS |
| ATTAAACCACCTGCCCCAAC+CGG | 0.474646 | 8.3:+13301845 | None:intergenic |
| CCTATCATCCCAAGATATAG+AGG | 0.476285 | 8.3:+13300617 | None:intergenic |
| TGCTAGTAGTGGTGATGACT+TGG | 0.501772 | 8.3:-13301798 | MS.gene61494:CDS |
| GCCATGACGATCGTATTAGA+AGG | 0.509433 | 8.3:-13301622 | MS.gene61494:intron |
| TCAGTTGCATTGCAATGTCT+GGG | 0.511639 | 8.3:-13301874 | None:intergenic |
| ACAGTGTTGCCATTCGCCAC+TGG | 0.512752 | 8.3:-13300488 | MS.gene61494:CDS |
| TTGGGGCAGGTGGTTTAATG+AGG | 0.517419 | 8.3:-13301841 | MS.gene61494:CDS |
| CGAGTCCTCCTAAAAGGACA+TGG | 0.538660 | 8.3:-13301736 | MS.gene61494:CDS |
| TCTTGGCTTGGAGCGTTCGA+AGG | 0.539897 | 8.3:-13300556 | MS.gene61494:CDS |
| TAATACGATCGTCATGGCAC+AGG | 0.555324 | 8.3:+13301627 | None:intergenic |
| GGAATTCATCATTCTGAGGC+CGG | 0.559074 | 8.3:+13300127 | None:intergenic |
| TACACTATTCATGGCATGCA+TGG | 0.561683 | 8.3:-13300184 | MS.gene61494:CDS |
| TTGTTGATACATACCAGAAG+AGG | 0.562376 | 8.3:+13300304 | None:intergenic |
| TGGAAGACGATGCATGTTCG+AGG | 0.564813 | 8.3:-13301778 | MS.gene61494:CDS |
| ATTCCGAATCCAGTGGCGAA+TGG | 0.603263 | 8.3:+13300479 | None:intergenic |
| CCAAATTGGCCACAAAGCAA+AGG | 0.609872 | 8.3:+13300342 | None:intergenic |
| CAGTTGCATTGCAATGTCTG+GGG | 0.625521 | 8.3:-13301873 | None:intergenic |
| AGCCAGGGTTATGCTAGTAG+TGG | 0.628875 | 8.3:-13301809 | MS.gene61494:CDS |
| CACCACTACTAGCATAACCC+TGG | 0.638272 | 8.3:+13301807 | None:intergenic |
| AGTTGCATTGCAATGTCTGG+GGG | 0.643653 | 8.3:-13301872 | None:intergenic |
| ACCTTCTAATACGATCGTCA+TGG | 0.649054 | 8.3:+13301621 | None:intergenic |
| GTACGGAATTCATCATTCTG+AGG | 0.654930 | 8.3:+13300123 | None:intergenic |
| TGTTTCTTACAAGCAAAAGG+AGG | 0.657267 | 8.3:+13300454 | None:intergenic |
| ACTATTCATGGCATGCATGG+TGG | 0.676070 | 8.3:-13300181 | MS.gene61494:CDS |
| GGAGGTGATTCCGAATCCAG+TGG | 0.689356 | 8.3:+13300472 | None:intergenic |
| ATGAGGCAGAGACATAGCCA+GGG | 0.708201 | 8.3:-13301824 | MS.gene61494:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAGTTGTATTTATAAA+CGG | - | chr8.3:13300414-13300433 | MS.gene61494:intron | 10.0% |
| !! | ACGACAAAAAAAAAATTAAA+AGG | - | chr8.3:13300696-13300715 | MS.gene61494:intron | 15.0% |
| !! | AAATTTAGAGGAAAAATAAC+AGG | + | chr8.3:13300869-13300888 | None:intergenic | 20.0% |
| !! | AAGTAATAAAACATAGTAAG+CGG | + | chr8.3:13301708-13301727 | None:intergenic | 20.0% |
| !! | AATTTAGAGGAAAAATAACA+GGG | + | chr8.3:13300868-13300887 | None:intergenic | 20.0% |
| !! | TACTTATATAATAGGAAAGA+GGG | + | chr8.3:13301164-13301183 | None:intergenic | 20.0% |
| !! | TTTCATTTATACAAGTATCT+TGG | - | chr8.3:13301403-13301422 | MS.gene61494:intron | 20.0% |
| !!! | GTTATCACAATTTCAATTTT+TGG | + | chr8.3:13301744-13301763 | None:intergenic | 20.0% |
| !!! | TATGAACTGATTTTATGTTT+AGG | + | chr8.3:13301009-13301028 | None:intergenic | 20.0% |
| !!! | TGTTATTTTTCCTCTAAATT+TGG | - | chr8.3:13300868-13300887 | MS.gene61494:intron | 20.0% |
| !!! | TGTTTAAAATCCAAATTTAG+AGG | + | chr8.3:13300881-13300900 | None:intergenic | 20.0% |
| ! | AAAAATGGGGATTAAAGAAA+TGG | - | chr8.3:13301450-13301469 | MS.gene61494:intron | 25.0% |
| ! | AAAATGGGGATTAAAGAAAT+GGG | - | chr8.3:13301451-13301470 | MS.gene61494:intron | 25.0% |
| ! | AAGTTCACTTTAATGTGTAA+CGG | - | chr8.3:13300389-13300408 | MS.gene61494:intron | 25.0% |
| ! | ATCTTAAATTTCATCAAACC+GGG | + | chr8.3:13301187-13301206 | None:intergenic | 25.0% |
| ! | CATATTTGAAAAGCAAATAG+TGG | + | chr8.3:13300817-13300836 | None:intergenic | 25.0% |
| ! | CATCTTAAATTTCATCAAAC+CGG | + | chr8.3:13301188-13301207 | None:intergenic | 25.0% |
| ! | GATTATGAAAATTCCGATAT+TGG | + | chr8.3:13301314-13301333 | None:intergenic | 25.0% |
| ! | GTACTTATATAATAGGAAAG+AGG | + | chr8.3:13301165-13301184 | None:intergenic | 25.0% |
| ! | TTAAGATAAACAGTATCCAA+CGG | - | chr8.3:13301103-13301122 | MS.gene61494:intron | 25.0% |
| ! | TTTCCTATTATATAAGTACC+CGG | - | chr8.3:13301166-13301185 | MS.gene61494:intron | 25.0% |
| !!! | GCTGCTTTTATTTTATACTT+TGG | - | chr8.3:13300299-13300318 | MS.gene61494:intron | 25.0% |
| !!! | TAATCCCTTATCTCATTTTT+GGG | - | chr8.3:13301818-13301837 | MS.gene61494:CDS | 25.0% |
| AAACCGGGTACTTATATAAT+AGG | + | chr8.3:13301172-13301191 | None:intergenic | 30.0% | |
| AAATTTCGATATCGTCAAAC+AGG | + | chr8.3:13301223-13301242 | None:intergenic | 30.0% | |
| AACTCATATCTGATTAAACC+AGG | + | chr8.3:13301053-13301072 | None:intergenic | 30.0% | |
| ACTTGACTTCATACCAATAT+CGG | - | chr8.3:13301298-13301317 | MS.gene61494:intron | 30.0% | |
| AGAATCCCAAAAATGAGATA+AGG | + | chr8.3:13301826-13301845 | None:intergenic | 30.0% | |
| ATAACTCGACAAAAAACATC+AGG | - | chr8.3:13300756-13300775 | MS.gene61494:intron | 30.0% | |
| CAATTGGATGTGGAAATTAT+GGG | - | chr8.3:13300923-13300942 | MS.gene61494:intron | 30.0% | |
| GAATCCCAAAAATGAGATAA+GGG | + | chr8.3:13301825-13301844 | None:intergenic | 30.0% | |
| GTTACACATTAAAGTGAACT+TGG | + | chr8.3:13300390-13300409 | None:intergenic | 30.0% | |
| TATATAATAGGAAAGAGGGA+AGG | + | chr8.3:13301160-13301179 | None:intergenic | 30.0% | |
| TCAATTGGATGTGGAAATTA+TGG | - | chr8.3:13300922-13300941 | MS.gene61494:intron | 30.0% | |
| TCGAAGGTTTGATGAAAAAT+GGG | - | chr8.3:13301436-13301455 | MS.gene61494:intron | 30.0% | |
| TCTCGATGTTCATTTATTGA+TGG | - | chr8.3:13300455-13300474 | MS.gene61494:intron | 30.0% | |
| TTCGAAGGTTTGATGAAAAA+TGG | - | chr8.3:13301435-13301454 | MS.gene61494:intron | 30.0% | |
| TTTATACAAGTATCTTGGCT+TGG | - | chr8.3:13301408-13301427 | MS.gene61494:intron | 30.0% | |
| TTTCTTTATTGTGCCAAAGA+TGG | - | chr8.3:13300480-13300499 | MS.gene61494:CDS | 30.0% | |
| ! | AGATGCTTGAGAATTTTCTT+TGG | - | chr8.3:13300267-13300286 | MS.gene61494:intron | 30.0% |
| ! | ATTTGTTTGTTGAGGTGTTT+AGG | - | chr8.3:13300511-13300530 | MS.gene61494:CDS | 30.0% |
| ! | GTAATCCCTTATCTCATTTT+TGG | - | chr8.3:13301817-13301836 | MS.gene61494:CDS | 30.0% |
| ! | GTTTGTTTCTTACAAGCAAA+AGG | + | chr8.3:13301528-13301547 | None:intergenic | 30.0% |
| !!! | TATCTCATTTTTGGGATTCT+TGG | - | chr8.3:13301826-13301845 | MS.gene61494:CDS | 30.0% |
| ATCGTCAAGAAACTCCAAAT+TGG | + | chr8.3:13301651-13301670 | None:intergenic | 35.0% | |
| ATTCACTTCAAAACATCCGT+TGG | + | chr8.3:13301122-13301141 | None:intergenic | 35.0% | |
| ATTTCCACATCCAATTGACA+AGG | + | chr8.3:13300920-13300939 | None:intergenic | 35.0% | |
| CGAAGGTTTGATGAAAAATG+GGG | - | chr8.3:13301437-13301456 | MS.gene61494:intron | 35.0% | |
| GCACAGGAGATATATGAAAT+TGG | + | chr8.3:13300336-13300355 | None:intergenic | 35.0% | |
| TATCTTGGGATGATAGGTAT+TGG | - | chr8.3:13301365-13301384 | MS.gene61494:intron | 35.0% | |
| TGTAAACTGCACAACATAAG+AGG | + | chr8.3:13301776-13301795 | None:intergenic | 35.0% | |
| TGTGCAGTTTACACTATTCA+TGG | - | chr8.3:13301783-13301802 | MS.gene61494:CDS | 35.0% | |
| TGTTTCTTACAAGCAAAAGG+AGG | + | chr8.3:13301525-13301544 | None:intergenic | 35.0% | |
| TTGTATTTATAAACGGCTGC+TGG | - | chr8.3:13300421-13300440 | MS.gene61494:intron | 35.0% | |
| TTGTTGATACATACCAGAAG+AGG | + | chr8.3:13301675-13301694 | None:intergenic | 35.0% | |
| TTTCCACATCCAATTGACAA+GGG | + | chr8.3:13300919-13300938 | None:intergenic | 35.0% | |
| ! | TAGCAGGAATTTGTTTGTTG+AGG | - | chr8.3:13300503-13300522 | MS.gene61494:CDS | 35.0% |
| ! | TTTTGCTTACTCCCTATCTT+TGG | - | chr8.3:13301597-13301616 | MS.gene61494:intron | 35.0% |
| !!! | ACGGATGTTTTGAAGTGAAT+CGG | - | chr8.3:13301122-13301141 | MS.gene61494:intron | 35.0% |
| AACCTAGAGATGCCAAAGAT+AGG | + | chr8.3:13301612-13301631 | None:intergenic | 40.0% | |
| ACCTAGAGATGCCAAAGATA+GGG | + | chr8.3:13301611-13301630 | None:intergenic | 40.0% | |
| ACCTTCTAATACGATCGTCA+TGG | + | chr8.3:13300358-13300377 | None:intergenic | 40.0% | |
| AGATAGGGAGTAAGCAAAAC+AGG | + | chr8.3:13301596-13301615 | None:intergenic | 40.0% | |
| CAAAACATGATGTCAGTTCC+TGG | - | chr8.3:13301032-13301051 | MS.gene61494:intron | 40.0% | |
| CAAATTCCTGCTACCATCTT+TGG | + | chr8.3:13300496-13300515 | None:intergenic | 40.0% | |
| CCTATCATCCCAAGATATAG+AGG | + | chr8.3:13301362-13301381 | None:intergenic | 40.0% | |
| CCTCTATATCTTGGGATGAT+AGG | - | chr8.3:13301359-13301378 | MS.gene61494:intron | 40.0% | |
| GATAGGGAGTAAGCAAAACA+GGG | + | chr8.3:13301595-13301614 | None:intergenic | 40.0% | |
| GTACGGAATTCATCATTCTG+AGG | + | chr8.3:13301856-13301875 | None:intergenic | 40.0% | |
| TACACTATTCATGGCATGCA+TGG | - | chr8.3:13301792-13301811 | MS.gene61494:CDS | 40.0% | |
| TGATTGATGCCCTTGTCAAT+TGG | - | chr8.3:13300907-13300926 | MS.gene61494:intron | 40.0% | |
| TTTCTTGACGATTCCTCTTC+TGG | - | chr8.3:13301659-13301678 | MS.gene61494:CDS | 40.0% | |
| ! | ATCTCGATCCATGTCCTTTT+AGG | + | chr8.3:13300251-13300270 | None:intergenic | 40.0% |
| !!! | TCATTTTTGGGATTCTTGGC+CGG | - | chr8.3:13301830-13301849 | MS.gene61494:CDS | 40.0% |
| ACTATTCATGGCATGCATGG+TGG | - | chr8.3:13301795-13301814 | MS.gene61494:CDS | 45.0% | |
| ATCAGGCCAGCCTTTAATGA+AGG | - | chr8.3:13300773-13300792 | MS.gene61494:intron | 45.0% | |
| ATGCCCTTGTCAATTGGATG+TGG | - | chr8.3:13300913-13300932 | MS.gene61494:intron | 45.0% | |
| ATTGTGCCAAAGATGGTAGC+AGG | - | chr8.3:13300487-13300506 | MS.gene61494:CDS | 45.0% | |
| CCAAATTGGCCACAAAGCAA+AGG | + | chr8.3:13301637-13301656 | None:intergenic | 45.0% | |
| CCAGCCTTTAATGAAGGAGA+GGG | - | chr8.3:13300779-13300798 | MS.gene61494:intron | 45.0% | |
| CCTTTGCTTTGTGGCCAATT+TGG | - | chr8.3:13301634-13301653 | MS.gene61494:CDS | 45.0% | |
| CTAGGTTCACCTTTGCTTTG+TGG | - | chr8.3:13301625-13301644 | MS.gene61494:CDS | 45.0% | |
| CTCACCCTCTCCTTCATTAA+AGG | + | chr8.3:13300786-13300805 | None:intergenic | 45.0% | |
| GACTTGCGAGTTATCAACGT+TGG | - | chr8.3:13300635-13300654 | MS.gene61494:intron | 45.0% | |
| GCAGACTGCCTCTATATCTT+GGG | - | chr8.3:13301351-13301370 | MS.gene61494:intron | 45.0% | |
| GCCATGACGATCGTATTAGA+AGG | - | chr8.3:13300354-13300373 | MS.gene61494:intron | 45.0% | |
| GGCAGTCTGCAATAGAACTA+AGG | + | chr8.3:13301341-13301360 | None:intergenic | 45.0% | |
| TAATACGATCGTCATGGCAC+AGG | + | chr8.3:13300352-13300371 | None:intergenic | 45.0% | |
| TCCCTATCTTTGGCATCTCT+AGG | - | chr8.3:13301607-13301626 | MS.gene61494:intron | 45.0% | |
| TCGATATCGTCAAACAGGTG+CGG | + | chr8.3:13301218-13301237 | None:intergenic | 45.0% | |
| TGCAGACTGCCTCTATATCT+TGG | - | chr8.3:13301350-13301369 | MS.gene61494:intron | 45.0% | |
| TTGCGAGTTATCAACGTTGG+CGG | - | chr8.3:13300638-13300657 | MS.gene61494:intron | 45.0% | |
| ! | TCGATCCATGTCCTTTTAGG+AGG | + | chr8.3:13300248-13300267 | None:intergenic | 45.0% |
| ! | TGCTAGTAGTGGTGATGACT+TGG | - | chr8.3:13300178-13300197 | MS.gene61494:CDS | 45.0% |
| !! | CATGTCCTTTTAGGAGGACT+CGG | + | chr8.3:13300242-13300261 | None:intergenic | 45.0% |
| !! | GGAATTCATCATTCTGAGGC+CGG | + | chr8.3:13301852-13301871 | None:intergenic | 45.0% |
| AACTCGCAAGTCGCAATGCT+GGG | + | chr8.3:13300627-13300646 | None:intergenic | 50.0% | |
| AATGAGGCAGAGACATAGCC+AGG | - | chr8.3:13300151-13300170 | MS.gene61494:CDS | 50.0% | |
| AATGCTGGGAGCTTCACAGT+TGG | + | chr8.3:13300613-13300632 | None:intergenic | 50.0% | |
| AGCCAGGGTTATGCTAGTAG+TGG | - | chr8.3:13300167-13300186 | MS.gene61494:CDS | 50.0% | |
| ATAAGACCAGACCATGAGGC+AGG | - | chr8.3:13300948-13300967 | MS.gene61494:intron | 50.0% | |
| ATGAGGCAGAGACATAGCCA+GGG | - | chr8.3:13300152-13300171 | MS.gene61494:CDS | 50.0% | |
| ATTAAACCACCTGCCCCAAC+CGG | + | chr8.3:13300134-13300153 | None:intergenic | 50.0% | |
| ATTCCGAATCCAGTGGCGAA+TGG | + | chr8.3:13301500-13301519 | None:intergenic | 50.0% | |
| CACCACTACTAGCATAACCC+TGG | + | chr8.3:13300172-13300191 | None:intergenic | 50.0% | |
| CCCTCTCCTTCATTAAAGGC+TGG | + | chr8.3:13300782-13300801 | None:intergenic | 50.0% | |
| CGAGTCCTCCTAAAAGGACA+TGG | - | chr8.3:13300240-13300259 | MS.gene61494:intron | 50.0% | |
| GCCAGCCTTTAATGAAGGAG+AGG | - | chr8.3:13300778-13300797 | MS.gene61494:intron | 50.0% | |
| GGTCATAAGACCAGACCATG+AGG | - | chr8.3:13300944-13300963 | MS.gene61494:intron | 50.0% | |
| TAACTCGCAAGTCGCAATGC+TGG | + | chr8.3:13300628-13300647 | None:intergenic | 50.0% | |
| TAAGACCAGACCATGAGGCA+GGG | - | chr8.3:13300949-13300968 | MS.gene61494:intron | 50.0% | |
| TGGAAGACGATGCATGTTCG+AGG | - | chr8.3:13300198-13300217 | MS.gene61494:intron | 50.0% | |
| TTGCCATTCGCCACTGGATT+CGG | - | chr8.3:13301494-13301513 | MS.gene61494:intron | 50.0% | |
| TTGGGGCAGGTGGTTTAATG+AGG | - | chr8.3:13300135-13300154 | MS.gene61494:CDS | 50.0% | |
| ACAGTGTTGCCATTCGCCAC+TGG | - | chr8.3:13301488-13301507 | MS.gene61494:intron | 55.0% | |
| GGAGGTGATTCCGAATCCAG+TGG | + | chr8.3:13301507-13301526 | None:intergenic | 55.0% | |
| TGCCTCCGAGTCCTCCTAAA+AGG | - | chr8.3:13300234-13300253 | MS.gene61494:intron | 55.0% | |
| !! | GTCCTTTTAGGAGGACTCGG+AGG | + | chr8.3:13300239-13300258 | None:intergenic | 55.0% |
| !! | TCTTGGCTTGGAGCGTTCGA+AGG | - | chr8.3:13301420-13301439 | MS.gene61494:intron | 55.0% |
| ATGTCTGGGGGAACACCGGT+TGG | - | chr8.3:13300116-13300135 | MS.gene61494:CDS | 60.0% | |
| ! | TGTCTGGGGGAACACCGGTT+GGG | - | chr8.3:13300117-13300136 | MS.gene61494:CDS | 60.0% |
| ACGTGCCCTGCCTCATGGTC+TGG | + | chr8.3:13300957-13300976 | None:intergenic | 65.0% | |
| TGCACACGTGCCCTGCCTCA+TGG | + | chr8.3:13300962-13300981 | None:intergenic | 65.0% | |
| ! | GTCTGGGGGAACACCGGTTG+GGG | - | chr8.3:13300118-13300137 | MS.gene61494:CDS | 65.0% |
| ! | GGAACACCGGTTGGGGCAGG+TGG | - | chr8.3:13300125-13300144 | MS.gene61494:CDS | 70.0% |
| ! | GGGGGAACACCGGTTGGGGC+AGG | - | chr8.3:13300122-13300141 | MS.gene61494:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 13300116 | 13301882 | 13300116 | ID=MS.gene61494 |
| chr8.3 | mRNA | 13300116 | 13301882 | 13300116 | ID=MS.gene61494.t1;Parent=MS.gene61494 |
| chr8.3 | exon | 13301623 | 13301882 | 13301623 | ID=MS.gene61494.t1.exon1;Parent=MS.gene61494.t1 |
| chr8.3 | CDS | 13301623 | 13301882 | 13301623 | ID=cds.MS.gene61494.t1;Parent=MS.gene61494.t1 |
| chr8.3 | exon | 13300464 | 13300643 | 13300464 | ID=MS.gene61494.t1.exon2;Parent=MS.gene61494.t1 |
| chr8.3 | CDS | 13300464 | 13300643 | 13300464 | ID=cds.MS.gene61494.t1;Parent=MS.gene61494.t1 |
| chr8.3 | exon | 13300318 | 13300369 | 13300318 | ID=MS.gene61494.t1.exon3;Parent=MS.gene61494.t1 |
| chr8.3 | CDS | 13300318 | 13300369 | 13300318 | ID=cds.MS.gene61494.t1;Parent=MS.gene61494.t1 |
| chr8.3 | exon | 13300116 | 13300208 | 13300116 | ID=MS.gene61494.t1.exon4;Parent=MS.gene61494.t1 |
| chr8.3 | CDS | 13300116 | 13300208 | 13300116 | ID=cds.MS.gene61494.t1;Parent=MS.gene61494.t1 |
| Gene Sequence |
| Protein sequence |
