Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69214.t1 | XP_003620634.1 | 93.8 | 194 | 12 | 0 | 1 | 194 | 1 | 194 | 1.10E-95 | 359.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69214.t1 | O81098 | 54.9 | 193 | 85 | 1 | 2 | 194 | 1 | 191 | 1.5e-53 | 210.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69214.t1 | G7KPG3 | 93.8 | 194 | 12 | 0 | 1 | 194 | 1 | 194 | 7.7e-96 | 359.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene69214 | 0.860545 | 1.92E-63 | -1.69E-46 |
| MS.gene049825 | MS.gene69214 | 0.881148 | 3.05E-70 | -1.69E-46 |
| MS.gene049873 | MS.gene69214 | 0.848548 | 5.71E-60 | -1.69E-46 |
| MS.gene050303 | MS.gene69214 | 0.857533 | 1.53E-62 | -1.69E-46 |
| MS.gene050355 | MS.gene69214 | 0.814717 | 1.34E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene69214 | 0.829357 | 5.39E-55 | -1.69E-46 |
| MS.gene05188 | MS.gene69214 | 0.804583 | 2.01E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene69214 | 0.804883 | 1.74E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene69214 | 0.807337 | 5.31E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene69214 | 0.809798 | 1.58E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene69214 | 0.805286 | 1.44E-49 | -1.69E-46 |
| MS.gene053080 | MS.gene69214 | 0.836574 | 8.64E-57 | -1.69E-46 |
| MS.gene053226 | MS.gene69214 | 0.843921 | 1.04E-58 | -1.69E-46 |
| MS.gene053294 | MS.gene69214 | 0.825384 | 4.83E-54 | -1.69E-46 |
| MS.gene05365 | MS.gene69214 | 0.835036 | 2.12E-56 | -1.69E-46 |
| MS.gene054967 | MS.gene69214 | 0.811213 | 7.84E-51 | -1.69E-46 |
| MS.gene05548 | MS.gene69214 | 0.825251 | 5.19E-54 | -1.69E-46 |
| MS.gene055555 | MS.gene69214 | 0.840098 | 1.07E-57 | -1.69E-46 |
| MS.gene055778 | MS.gene69214 | 0.829394 | 5.28E-55 | -1.69E-46 |
| MS.gene055808 | MS.gene69214 | 0.86677 | 2.24E-65 | -1.69E-46 |
| MS.gene056091 | MS.gene69214 | 0.867895 | 9.77E-66 | -1.69E-46 |
| MS.gene056215 | MS.gene69214 | 0.814411 | 1.56E-51 | -1.69E-46 |
| MS.gene056403 | MS.gene69214 | 0.80682 | 6.83E-50 | -1.69E-46 |
| MS.gene056605 | MS.gene69214 | 0.801995 | 6.92E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene69214 | 0.815227 | 1.03E-51 | -1.69E-46 |
| MS.gene05689 | MS.gene69214 | 0.835237 | 1.89E-56 | -1.69E-46 |
| MS.gene057060 | MS.gene69214 | 0.818077 | 2.37E-52 | -1.69E-46 |
| MS.gene057079 | MS.gene69214 | 0.810184 | 1.31E-50 | -1.69E-46 |
| MS.gene057555 | MS.gene69214 | 0.813569 | 2.40E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene69214 | 0.802778 | 4.77E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene69214 | 0.824164 | 9.36E-54 | -1.69E-46 |
| MS.gene058037 | MS.gene69214 | 0.815919 | 7.22E-52 | -1.69E-46 |
| MS.gene058498 | MS.gene69214 | 0.803294 | 3.73E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene69214 | 0.804903 | 1.73E-49 | -1.69E-46 |
| MS.gene05953 | MS.gene69214 | 0.849848 | 2.48E-60 | -1.69E-46 |
| MS.gene05954 | MS.gene69214 | 0.875753 | 2.40E-68 | -1.69E-46 |
| MS.gene059625 | MS.gene69214 | 0.809658 | 1.70E-50 | -1.69E-46 |
| MS.gene059830 | MS.gene69214 | 0.802333 | 5.90E-49 | -1.69E-46 |
| MS.gene059935 | MS.gene69214 | 0.843701 | 1.19E-58 | -1.69E-46 |
| MS.gene06001 | MS.gene69214 | 0.808764 | 2.64E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene69214 | 0.852192 | 5.42E-61 | -1.69E-46 |
| MS.gene060586 | MS.gene69214 | 0.837824 | 4.14E-57 | -1.69E-46 |
| MS.gene060763 | MS.gene69214 | 0.807284 | 5.45E-50 | -1.69E-46 |
| MS.gene060830 | MS.gene69214 | 0.824372 | 8.36E-54 | -1.69E-46 |
| MS.gene061040 | MS.gene69214 | -0.821238 | 4.49E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69214.t1 | MTR_6g088010 | 93.814 | 194 | 12 | 0 | 1 | 194 | 1 | 194 | 4.83e-136 | 379 |
| MS.gene69214.t1 | MTR_6g088020 | 84.536 | 194 | 30 | 0 | 1 | 194 | 1 | 194 | 1.23e-121 | 342 |
| MS.gene69214.t1 | MTR_5g005470 | 61.340 | 194 | 73 | 1 | 1 | 194 | 1 | 192 | 2.30e-81 | 240 |
| MS.gene69214.t1 | MTR_5g016200 | 58.974 | 195 | 73 | 2 | 1 | 194 | 1 | 189 | 1.14e-74 | 223 |
| MS.gene69214.t1 | MTR_5g016220 | 56.995 | 193 | 81 | 1 | 2 | 194 | 127 | 317 | 1.18e-73 | 225 |
| MS.gene69214.t1 | MTR_5g016220 | 45.865 | 133 | 72 | 0 | 1 | 133 | 1 | 133 | 8.18e-33 | 120 |
| MS.gene69214.t1 | MTR_6g042230 | 56.477 | 193 | 81 | 1 | 1 | 193 | 1 | 190 | 1.80e-71 | 215 |
| MS.gene69214.t1 | MTR_7g090220 | 41.530 | 183 | 102 | 2 | 10 | 191 | 53 | 231 | 1.93e-41 | 140 |
| MS.gene69214.t1 | MTR_3g058520 | 52.459 | 61 | 28 | 1 | 131 | 191 | 94 | 153 | 2.43e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69214.t1 | AT3G22320 | 54.922 | 193 | 85 | 1 | 2 | 194 | 1 | 191 | 6.53e-73 | 219 |
| MS.gene69214.t1 | AT5G57980 | 41.969 | 193 | 106 | 3 | 5 | 193 | 5 | 195 | 4.62e-49 | 159 |
| MS.gene69214.t1 | AT3G57080 | 37.895 | 190 | 113 | 2 | 3 | 191 | 20 | 205 | 1.65e-38 | 132 |
| MS.gene69214.t1 | AT2G41340 | 38.798 | 183 | 107 | 2 | 10 | 191 | 23 | 201 | 4.63e-37 | 128 |
| MS.gene69214.t1 | AT3G54490 | 36.612 | 183 | 111 | 2 | 10 | 191 | 38 | 216 | 1.76e-31 | 114 |
| MS.gene69214.t1 | AT2G41340 | 34.286 | 175 | 101 | 3 | 10 | 183 | 23 | 184 | 4.75e-25 | 97.1 |
| MS.gene69214.t1 | AT2G41340 | 36.478 | 159 | 96 | 2 | 10 | 167 | 23 | 177 | 1.96e-24 | 94.7 |
Find 35 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCGCCTTGAAGTCTTTC+TGG | 0.158098 | 6.2:-87224079 | MS.gene69214:intron |
| TTTCATGTGTTCGCCGTATT+TGG | 0.178722 | 6.2:+87224317 | None:intergenic |
| GAATGTTGATAATGGGATTT+TGG | 0.182720 | 6.2:-87224166 | MS.gene69214:CDS |
| GATCCTGTTGCGAGATATTA+TGG | 0.267061 | 6.2:-87221014 | MS.gene69214:CDS |
| CTTGGTGTTAAGATTGTTAG+AGG | 0.323964 | 6.2:-87224213 | MS.gene69214:CDS |
| AGTTTCTGTCGGATAACATT+TGG | 0.355496 | 6.2:+87224388 | None:intergenic |
| TTGAACGAGAATGTTGATAA+TGG | 0.358712 | 6.2:-87224174 | MS.gene69214:CDS |
| GGATCCGACGTCAAAATTCT+AGG | 0.372876 | 6.2:+87221032 | None:intergenic |
| TGGGTTGTTTCTGTGAGTTT+TGG | 0.406142 | 6.2:+87224275 | None:intergenic |
| ACACATGAAACGAGAACAAT+TGG | 0.418532 | 6.2:-87224304 | MS.gene69214:CDS |
| TTCTCGAGACATGGTGAGTT+CGG | 0.435332 | 6.2:+87224350 | None:intergenic |
| AGTCCATAATATCTCGCAAC+AGG | 0.442138 | 6.2:+87221011 | None:intergenic |
| TGAACGAGAATGTTGATAAT+GGG | 0.456181 | 6.2:-87224173 | MS.gene69214:CDS |
| GACAAGTTGTCAGGATTATC+CGG | 0.456842 | 6.2:-87220980 | MS.gene69214:CDS |
| CAATTACCAGAAAGACTTCA+AGG | 0.467927 | 6.2:+87224073 | None:intergenic |
| TTCTCTGATGATGCTAAACT+TGG | 0.475053 | 6.2:-87224231 | MS.gene69214:CDS |
| CACAGTGTATTTCTTGAGCA+AGG | 0.476320 | 6.2:+87222341 | None:intergenic |
| GTTGCTGAAATGAGTTCTGT+TGG | 0.477137 | 6.2:-87224105 | MS.gene69214:CDS |
| TAAGGCGTGGACAAGTTGTC+AGG | 0.488439 | 6.2:-87220989 | MS.gene69214:CDS |
| GAAGATTTCATCTCCAAATA+CGG | 0.498349 | 6.2:-87224330 | MS.gene69214:CDS |
| TGTCGGATAACATTTGGAGA+AGG | 0.521778 | 6.2:+87224394 | None:intergenic |
| GTCGGATAACATTTGGAGAA+GGG | 0.526708 | 6.2:+87224395 | None:intergenic |
| TTGCGAGATATTATGGACTA+AGG | 0.534711 | 6.2:-87221007 | MS.gene69214:CDS |
| CGAACGTGTACCTCCACATC+AGG | 0.539250 | 6.2:-87222388 | MS.gene69214:CDS |
| TGCCTGCAGTCTCACTTGGC+CGG | 0.539482 | 6.2:+87220961 | None:intergenic |
| CAAGGCTTTCTTCTCAGCGT+CGG | 0.546747 | 6.2:+87222359 | None:intergenic |
| TTCGACGAGGTAGTTTCTGT+CGG | 0.580835 | 6.2:+87224377 | None:intergenic |
| GATGAAATCTTCTCGAGACA+TGG | 0.592229 | 6.2:+87224341 | None:intergenic |
| GGTGCAGGAGGATGAACTGC+TGG | 0.602196 | 6.2:-87222427 | MS.gene69214:intron |
| ATACACTGTGAAAGATACTC+AGG | 0.612579 | 6.2:-87222328 | MS.gene69214:intron |
| AGATATTATGGACTAAGGCG+TGG | 0.621762 | 6.2:-87221002 | MS.gene69214:CDS |
| AACTGCTGGTGAACATAACA+AGG | 0.623262 | 6.2:-87222413 | MS.gene69214:CDS |
| GCGTCGGTGAGAACCTGATG+TGG | 0.633208 | 6.2:+87222375 | None:intergenic |
| TCGGTGAGAACCTGATGTGG+AGG | 0.676021 | 6.2:+87222378 | None:intergenic |
| TGAGTTCGGTGTCTTCGACG+AGG | 0.723258 | 6.2:+87224364 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTCAAATTATTAG+CGG | - | chr6.2:87221625-87221644 | MS.gene69214:intron | 10.0% |
| !!! | AACAATTTTCATATTATTAT+CGG | + | chr6.2:87221836-87221855 | None:intergenic | 10.0% |
| !! | AAATTCTAATACATGCATTA+TGG | - | chr6.2:87223576-87223595 | MS.gene69214:intron | 20.0% |
| !! | AAGGTTATTACTGATAAAAT+AGG | + | chr6.2:87223366-87223385 | None:intergenic | 20.0% |
| !! | AATTGTGTAATTATAAGTGT+CGG | + | chr6.2:87221599-87221618 | None:intergenic | 20.0% |
| !! | GACAAATTGATATAATTCAA+TGG | - | chr6.2:87222218-87222237 | MS.gene69214:intron | 20.0% |
| !! | GACTAAAAAAATTCAATTGA+AGG | + | chr6.2:87222394-87222413 | None:intergenic | 20.0% |
| !! | TAAAATCACTTCATATTTGA+TGG | - | chr6.2:87223686-87223705 | MS.gene69214:intron | 20.0% |
| !! | TACATCATTTAATCTAGAAA+TGG | + | chr6.2:87223812-87223831 | None:intergenic | 20.0% |
| !! | TTAACAAATTATTATCAGAG+TGG | + | chr6.2:87221496-87221515 | None:intergenic | 20.0% |
| !!! | GATTTTAATCTTGTTCAATT+GGG | + | chr6.2:87223673-87223692 | None:intergenic | 20.0% |
| !!! | TCTTTATCTAATGGATTTAT+TGG | - | chr6.2:87224263-87224282 | MS.gene69214:CDS | 20.0% |
| !!! | TGATTTTAATCTTGTTCAAT+TGG | + | chr6.2:87223674-87223693 | None:intergenic | 20.0% |
| !!! | TTAGCAACTTTAATTTCTTA+TGG | - | chr6.2:87224207-87224226 | MS.gene69214:CDS | 20.0% |
| !!! | TTTTGTAATATCTGAATTGT+TGG | - | chr6.2:87221872-87221891 | MS.gene69214:intron | 20.0% |
| ! | ATCCATTAGATAAAGAATGA+AGG | + | chr6.2:87224259-87224278 | None:intergenic | 25.0% |
| ! | ATTCTAACCAAAAAAATTCC+TGG | + | chr6.2:87222891-87222910 | None:intergenic | 25.0% |
| ! | GTATATACTATAACTCTGTT+TGG | - | chr6.2:87223829-87223848 | MS.gene69214:intron | 25.0% |
| ! | GTGATTAAAGTAAAGTTGTT+TGG | - | chr6.2:87223889-87223908 | MS.gene69214:intron | 25.0% |
| ! | TCATTTAATCTAGAAATGGA+AGG | + | chr6.2:87223808-87223827 | None:intergenic | 25.0% |
| ! | TTACTGATAAAATAGGAACT+AGG | + | chr6.2:87223359-87223378 | None:intergenic | 25.0% |
| ! | TTGCAAATTCGTAAATTTGA+AGG | - | chr6.2:87222574-87222593 | MS.gene69214:intron | 25.0% |
| !! | AATGATACTTTTACAACAGA+TGG | + | chr6.2:87222425-87222444 | None:intergenic | 25.0% |
| !! | GTGATTCATTCTTTTATAAG+AGG | - | chr6.2:87222637-87222656 | MS.gene69214:intron | 25.0% |
| !!! | TTGTTAGAGGTTTTATTACT+AGG | - | chr6.2:87221220-87221239 | MS.gene69214:intron | 25.0% |
| !!! | TTTTATTACTAGCTTTACAG+AGG | + | chr6.2:87223517-87223536 | None:intergenic | 25.0% |
| !!! | TTTTGTCATTTCTGAATTGT+TGG | - | chr6.2:87221382-87221401 | MS.gene69214:intron | 25.0% |
| AACAAATATCGTGCAAACTT+AGG | + | chr6.2:87224143-87224162 | None:intergenic | 30.0% | |
| AACTAGGAACAGATCAAATT+CGG | + | chr6.2:87223343-87223362 | None:intergenic | 30.0% | |
| ACAAATATCGTGCAAACTTA+GGG | + | chr6.2:87224142-87224161 | None:intergenic | 30.0% | |
| AGATGATAACTTCTAACATG+TGG | - | chr6.2:87223248-87223267 | MS.gene69214:intron | 30.0% | |
| ATATAATTGCATCACAATGC+AGG | + | chr6.2:87223478-87223497 | None:intergenic | 30.0% | |
| ATGCAAACAAGAACTAAGAA+CGG | + | chr6.2:87222494-87222513 | None:intergenic | 30.0% | |
| CAAACACTTCAAATTCAATC+TGG | - | chr6.2:87224081-87224100 | MS.gene69214:CDS | 30.0% | |
| CTAATACATGCATTATGGTT+TGG | - | chr6.2:87223581-87223600 | MS.gene69214:intron | 30.0% | |
| CTCCTTCATTCTTTATCTAA+TGG | - | chr6.2:87224254-87224273 | MS.gene69214:CDS | 30.0% | |
| GAAGATTTCATCTCCAAATA+CGG | - | chr6.2:87221090-87221109 | MS.gene69214:intron | 30.0% | |
| GTATATTAACTAACAAGCCT+AGG | + | chr6.2:87223451-87223470 | None:intergenic | 30.0% | |
| TGATGCAATTATATCCGAAT+TGG | - | chr6.2:87223484-87223503 | MS.gene69214:intron | 30.0% | |
| TTGACGAATGTGTAGAAAAA+TGG | - | chr6.2:87222722-87222741 | MS.gene69214:intron | 30.0% | |
| ! | CAGATTGAATTTGAAGTGTT+TGG | + | chr6.2:87224083-87224102 | None:intergenic | 30.0% |
| ! | GAAGTGTTTGGTAAAATTAG+CGG | + | chr6.2:87224071-87224090 | None:intergenic | 30.0% |
| ! | TGTTTGATAGCTATGAAACA+CGG | - | chr6.2:87222165-87222184 | MS.gene69214:intron | 30.0% |
| ! | TTGAACGAGAATGTTGATAA+TGG | - | chr6.2:87221246-87221265 | MS.gene69214:intron | 30.0% |
| !! | ACAGAGGTTATTTTCCAATT+CGG | + | chr6.2:87223501-87223520 | None:intergenic | 30.0% |
| !! | TGAACGAGAATGTTGATAAT+GGG | - | chr6.2:87221247-87221266 | MS.gene69214:intron | 30.0% |
| !! | TGCAGTATTGACAATCAAAA+TGG | - | chr6.2:87222615-87222634 | MS.gene69214:intron | 30.0% |
| !! | TTTTGATTGTCAATACTGCA+AGG | + | chr6.2:87222615-87222634 | None:intergenic | 30.0% |
| !!! | AACACACAGATTTTTTCAGA+TGG | + | chr6.2:87221168-87221187 | None:intergenic | 30.0% |
| !!! | ACACACAGATTTTTTCAGAT+GGG | + | chr6.2:87221167-87221186 | None:intergenic | 30.0% |
| !!! | ATGGCTTGATGTTTTGAAAA+AGG | - | chr6.2:87222315-87222334 | MS.gene69214:intron | 30.0% |
| !!! | GAATGTTGATAATGGGATTT+TGG | - | chr6.2:87221254-87221273 | MS.gene69214:intron | 30.0% |
| !!! | GAGTTTTGTTATGTCTTCTT+CGG | + | chr6.2:87220989-87221008 | None:intergenic | 30.0% |
| !!! | TGGCTTGATGTTTTGAAAAA+GGG | - | chr6.2:87222316-87222335 | MS.gene69214:intron | 30.0% |
| AAGTTGCTAAGACAAGTGAA+AGG | + | chr6.2:87224197-87224216 | None:intergenic | 35.0% | |
| ACACATGAAACGAGAACAAT+TGG | - | chr6.2:87221116-87221135 | MS.gene69214:intron | 35.0% | |
| AGTTTCTGTCGGATAACATT+TGG | + | chr6.2:87221035-87221054 | None:intergenic | 35.0% | |
| ATACACTGTGAAAGATACTC+AGG | - | chr6.2:87223092-87223111 | MS.gene69214:intron | 35.0% | |
| ATTCTTTGAACCATCACATG+TGG | - | chr6.2:87222442-87222461 | MS.gene69214:intron | 35.0% | |
| ATTGATATGCAACACTGACA+CGG | - | chr6.2:87221405-87221424 | MS.gene69214:intron | 35.0% | |
| CAATTACCAGAAAGACTTCA+AGG | + | chr6.2:87221350-87221369 | None:intergenic | 35.0% | |
| GGTTTGGACAATGCATATAA+GGG | - | chr6.2:87223597-87223616 | MS.gene69214:intron | 35.0% | |
| TAAGTCTACCACTAATCCTA+CGG | - | chr6.2:87222516-87222535 | MS.gene69214:intron | 35.0% | |
| TACTATAACTCTGTTTGGCA+AGG | - | chr6.2:87223834-87223853 | MS.gene69214:intron | 35.0% | |
| TCAAGCTCTATCTAACTTTG+TGG | + | chr6.2:87222039-87222058 | None:intergenic | 35.0% | |
| TGCAAACAAGAACTAAGAAC+GGG | + | chr6.2:87222493-87222512 | None:intergenic | 35.0% | |
| TTAGATAGAGCTTGATGTGT+AGG | - | chr6.2:87222044-87222063 | MS.gene69214:intron | 35.0% | |
| ! | AATCTTGTTCAATTGGGTTG+CGG | + | chr6.2:87223667-87223686 | None:intergenic | 35.0% |
| ! | GCGGAATTTAGCATTTCTTT+TGG | + | chr6.2:87223648-87223667 | None:intergenic | 35.0% |
| ! | TGGTTTGGACAATGCATATA+AGG | - | chr6.2:87223596-87223615 | MS.gene69214:intron | 35.0% |
| ! | TTCTCTGATGATGCTAAACT+TGG | - | chr6.2:87221189-87221208 | MS.gene69214:intron | 35.0% |
| ! | TTGCGAGATATTATGGACTA+AGG | - | chr6.2:87224413-87224432 | MS.gene69214:CDS | 35.0% |
| !! | AAAGGTGCGTCTTTTGAAAA+TGG | - | chr6.2:87222085-87222104 | MS.gene69214:intron | 35.0% |
| !! | CTTGGTGTTAAGATTGTTAG+AGG | - | chr6.2:87221207-87221226 | MS.gene69214:intron | 35.0% |
| !! | TACTATTAGTGTCGACATGT+CGG | + | chr6.2:87221925-87221944 | None:intergenic | 35.0% |
| !! | TTTTGAAAAAGGGTGATGAC+TGG | - | chr6.2:87222326-87222345 | MS.gene69214:intron | 35.0% |
| !!! | ACATTTGGAGAAGGGTTTTT+TGG | + | chr6.2:87221020-87221039 | None:intergenic | 35.0% |
| AAAAAATTCCTGGTGACACG+TGG | + | chr6.2:87222881-87222900 | None:intergenic | 40.0% | |
| AACTGCTGGTGAACATAACA+AGG | - | chr6.2:87223007-87223026 | MS.gene69214:intron | 40.0% | |
| AAGGTTGAGGTAATCATCGA+TGG | - | chr6.2:87222972-87222991 | MS.gene69214:intron | 40.0% | |
| AGTCCATAATATCTCGCAAC+AGG | + | chr6.2:87224412-87224431 | None:intergenic | 40.0% | |
| ATAGCTATGAAACACGGACA+TGG | - | chr6.2:87222171-87222190 | MS.gene69214:intron | 40.0% | |
| CACAGTGTATTTCTTGAGCA+AGG | + | chr6.2:87223082-87223101 | None:intergenic | 40.0% | |
| CACATTCGTCAAATTCGCAA+TGG | + | chr6.2:87222714-87222733 | None:intergenic | 40.0% | |
| CAGTATTCATCCACATGTGA+TGG | + | chr6.2:87222455-87222474 | None:intergenic | 40.0% | |
| CTAACACATGCTATGAAGCA+CGG | + | chr6.2:87221675-87221694 | None:intergenic | 40.0% | |
| GACAAGTTGTCAGGATTATC+CGG | - | chr6.2:87224440-87224459 | MS.gene69214:CDS | 40.0% | |
| GAGTAGTAGAGATTTGTGCA+AGG | - | chr6.2:87222807-87222826 | MS.gene69214:intron | 40.0% | |
| GAGTCCTTCTTCATATGTGT+TGG | - | chr6.2:87222936-87222955 | MS.gene69214:intron | 40.0% | |
| GATCCTGTTGCGAGATATTA+TGG | - | chr6.2:87224406-87224425 | MS.gene69214:CDS | 40.0% | |
| GATGAAATCTTCTCGAGACA+TGG | + | chr6.2:87221082-87221101 | None:intergenic | 40.0% | |
| GTCGGATAACATTTGGAGAA+GGG | + | chr6.2:87221028-87221047 | None:intergenic | 40.0% | |
| GTGTTTGGTAAAATTAGCGG+TGG | + | chr6.2:87224068-87224087 | None:intergenic | 40.0% | |
| GTTGCTGAAATGAGTTCTGT+TGG | - | chr6.2:87221315-87221334 | MS.gene69214:intron | 40.0% | |
| TCCTTCTTCATATGTGTTGG+TGG | - | chr6.2:87222939-87222958 | MS.gene69214:intron | 40.0% | |
| TGTCGGATAACATTTGGAGA+AGG | + | chr6.2:87221029-87221048 | None:intergenic | 40.0% | |
| TTTCATGTGTTCGCCGTATT+TGG | + | chr6.2:87221106-87221125 | None:intergenic | 40.0% | |
| ! | AGATATTATGGACTAAGGCG+TGG | - | chr6.2:87224418-87224437 | MS.gene69214:CDS | 40.0% |
| ! | CCTTCTTCATATGTGTTGGT+GGG | - | chr6.2:87222940-87222959 | MS.gene69214:intron | 40.0% |
| ! | CTGTTTGGTATAGTGTTGGA+TGG | + | chr6.2:87224118-87224137 | None:intergenic | 40.0% |
| ! | CTGTTTTCTGCACAAATCCT+AGG | - | chr6.2:87223431-87223450 | MS.gene69214:intron | 40.0% |
| ! | TTTGGTATAGTGTTGGATGG+TGG | + | chr6.2:87224115-87224134 | None:intergenic | 40.0% |
| !! | CGTTGGAAGGTGTTTGAAAA+AGG | - | chr6.2:87222067-87222086 | MS.gene69214:intron | 40.0% |
| !! | GCTACCTAGAATTTTGACGT+CGG | - | chr6.2:87224384-87224403 | MS.gene69214:CDS | 40.0% |
| !!! | CGTGTCACCAGGAATTTTTT+TGG | - | chr6.2:87222881-87222900 | MS.gene69214:intron | 40.0% |
| !!! | TGGGTTGTTTCTGTGAGTTT+TGG | + | chr6.2:87221148-87221167 | None:intergenic | 40.0% |
| AACACTGCACTCTGCACATA+AGG | + | chr6.2:87223385-87223404 | None:intergenic | 45.0% | |
| ACACTGACACTCCTTCGATT+AGG | - | chr6.2:87221554-87221573 | MS.gene69214:intron | 45.0% | |
| ACCACTAATCCTACGGACAA+TGG | - | chr6.2:87222523-87222542 | MS.gene69214:intron | 45.0% | |
| ACCATTGTCCGTAGGATTAG+TGG | + | chr6.2:87222527-87222546 | None:intergenic | 45.0% | |
| ACTAATCCTACGGACAATGG+TGG | - | chr6.2:87222526-87222545 | MS.gene69214:intron | 45.0% | |
| CATGCTATGAAGCACGGATA+CGG | + | chr6.2:87221669-87221688 | None:intergenic | 45.0% | |
| CCCACCAACACATATGAAGA+AGG | + | chr6.2:87222943-87222962 | None:intergenic | 45.0% | |
| CCTGATACGCTAAAAGCTAG+CGG | + | chr6.2:87223865-87223884 | None:intergenic | 45.0% | |
| GACACACTGTCCATAAGTGT+CGG | - | chr6.2:87222278-87222297 | MS.gene69214:intron | 45.0% | |
| GCAAGGTTGCACAGTATAGA+GGG | - | chr6.2:87222824-87222843 | MS.gene69214:intron | 45.0% | |
| GCACTTACACTTCTGATGGA+AGG | + | chr6.2:87222017-87222036 | None:intergenic | 45.0% | |
| GCTAAGACAAGTGAAAGGCA+AGG | + | chr6.2:87224192-87224211 | None:intergenic | 45.0% | |
| GGATCCGACGTCAAAATTCT+AGG | + | chr6.2:87224391-87224410 | None:intergenic | 45.0% | |
| GGGTCTGTTTGGTATAGTGT+TGG | + | chr6.2:87224122-87224141 | None:intergenic | 45.0% | |
| GTGCAAACTTAGGGTCTGTT+TGG | + | chr6.2:87224133-87224152 | None:intergenic | 45.0% | |
| TAAGCGCCTTGAAGTCTTTC+TGG | - | chr6.2:87221341-87221360 | MS.gene69214:intron | 45.0% | |
| TACGCTAAAAGCTAGCGGTT+TGG | + | chr6.2:87223860-87223879 | None:intergenic | 45.0% | |
| TCTTATCCACCATTGTCCGT+AGG | + | chr6.2:87222535-87222554 | None:intergenic | 45.0% | |
| TGCAAGGTTGCACAGTATAG+AGG | - | chr6.2:87222823-87222842 | MS.gene69214:intron | 45.0% | |
| TGTGGCACTTACACTTCTGA+TGG | + | chr6.2:87222021-87222040 | None:intergenic | 45.0% | |
| TGTTGGACAGTGTCAGACAA+TGG | - | chr6.2:87222256-87222275 | MS.gene69214:intron | 45.0% | |
| TTCAATGGAATTGCGCGTGT+CGG | - | chr6.2:87222233-87222252 | MS.gene69214:intron | 45.0% | |
| TTCGACGAGGTAGTTTCTGT+CGG | + | chr6.2:87221046-87221065 | None:intergenic | 45.0% | |
| TTCTCGAGACATGGTGAGTT+CGG | + | chr6.2:87221073-87221092 | None:intergenic | 45.0% | |
| ! | TCTTCATATGTGTTGGTGGG+TGG | - | chr6.2:87222943-87222962 | MS.gene69214:intron | 45.0% |
| ! | TGTTGGTGGGTGGTTCTTTA+AGG | - | chr6.2:87222953-87222972 | MS.gene69214:intron | 45.0% |
| !! | AAGGAGTGTCAGTGTTGCAT+AGG | + | chr6.2:87221549-87221568 | None:intergenic | 45.0% |
| !! | CCATAAGTGTCGGTGCTATA+GGG | - | chr6.2:87222288-87222307 | MS.gene69214:intron | 45.0% |
| !! | TCCATAAGTGTCGGTGCTAT+AGG | - | chr6.2:87222287-87222306 | MS.gene69214:intron | 45.0% |
| !! | TGGGTGGTTCTTTAAGGTTG+AGG | - | chr6.2:87222959-87222978 | MS.gene69214:intron | 45.0% |
| !! | ATTAAAAATAAATATAAAGA+AGG | + | chr6.2:87223131-87223150 | None:intergenic | 5.0% |
| AATTTCTGCCACGTGTCACC+AGG | - | chr6.2:87222870-87222889 | MS.gene69214:intron | 50.0% | |
| AGAGCTTGATGTGTAGGCGT+TGG | - | chr6.2:87222050-87222069 | MS.gene69214:intron | 50.0% | |
| CAAGGCTTTCTTCTCAGCGT+CGG | + | chr6.2:87223064-87223083 | None:intergenic | 50.0% | |
| CTAGGTAGCTGAGAAGCAGA+CGG | + | chr6.2:87224373-87224392 | None:intergenic | 50.0% | |
| GAGGTAATCATCGATGGTGC+AGG | - | chr6.2:87222978-87222997 | MS.gene69214:intron | 50.0% | |
| GTAATCATCGATGGTGCAGG+AGG | - | chr6.2:87222981-87223000 | MS.gene69214:intron | 50.0% | |
| TAAGGCGTGGACAAGTTGTC+AGG | - | chr6.2:87224431-87224450 | MS.gene69214:CDS | 50.0% | |
| TCCTTCGATTAGGTGTGTCC+CGG | - | chr6.2:87221564-87221583 | MS.gene69214:intron | 50.0% | |
| ! | ATTAGCGGTGTCAGAGTGTC+CGG | - | chr6.2:87221640-87221659 | MS.gene69214:intron | 50.0% |
| !! | CCCTATAGCACCGACACTTA+TGG | + | chr6.2:87222291-87222310 | None:intergenic | 50.0% |
| !! | CTTGATGTGTAGGCGTTGGA+AGG | - | chr6.2:87222054-87222073 | MS.gene69214:intron | 50.0% |
| !! | GTCGGTGCTATAGGGTTAGA+TGG | - | chr6.2:87222296-87222315 | MS.gene69214:intron | 50.0% |
| !! | TAAGTGTCGGTGTCTGACAC+CGG | + | chr6.2:87221586-87221605 | None:intergenic | 50.0% |
| !!! | CCGCTAGCTTTTAGCGTATC+AGG | - | chr6.2:87223862-87223881 | MS.gene69214:intron | 50.0% |
| ACCGGGACACACCTAATCGA+AGG | + | chr6.2:87221568-87221587 | None:intergenic | 55.0% | |
| CGAACGTGTACCTCCACATC+AGG | - | chr6.2:87223032-87223051 | MS.gene69214:intron | 55.0% | |
| TCGGTGAGAACCTGATGTGG+AGG | + | chr6.2:87223045-87223064 | None:intergenic | 55.0% | |
| TGAAGCACGGATACGGACAC+CGG | + | chr6.2:87221662-87221681 | None:intergenic | 55.0% | |
| !! | AAGTGTCGGTGTCTGACACC+GGG | + | chr6.2:87221585-87221604 | None:intergenic | 55.0% |
| !! | TGAGTTCGGTGTCTTCGACG+AGG | + | chr6.2:87221059-87221078 | None:intergenic | 55.0% |
| GGTGCAGGAGGATGAACTGC+TGG | - | chr6.2:87222993-87223012 | MS.gene69214:intron | 60.0% | |
| ! | GCGTCGGTGAGAACCTGATG+TGG | + | chr6.2:87223048-87223067 | None:intergenic | 60.0% |
| ! | GGAATTGCGCGTGTCGGTGT+TGG | - | chr6.2:87222239-87222258 | MS.gene69214:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 87220976 | 87224466 | 87220976 | ID=MS.gene69214 |
| chr6.2 | mRNA | 87220976 | 87224466 | 87220976 | ID=MS.gene69214.t1;Parent=MS.gene69214 |
| chr6.2 | exon | 87224080 | 87224466 | 87224080 | ID=MS.gene69214.t1.exon1;Parent=MS.gene69214.t1 |
| chr6.2 | CDS | 87224080 | 87224466 | 87224080 | ID=cds.MS.gene69214.t1;Parent=MS.gene69214.t1 |
| chr6.2 | exon | 87222329 | 87222442 | 87222329 | ID=MS.gene69214.t1.exon2;Parent=MS.gene69214.t1 |
| chr6.2 | CDS | 87222329 | 87222442 | 87222329 | ID=cds.MS.gene69214.t1;Parent=MS.gene69214.t1 |
| chr6.2 | exon | 87220976 | 87221057 | 87220976 | ID=MS.gene69214.t1.exon3;Parent=MS.gene69214.t1 |
| chr6.2 | CDS | 87220976 | 87221057 | 87220976 | ID=cds.MS.gene69214.t1;Parent=MS.gene69214.t1 |
| Gene Sequence |
| Protein sequence |
