AlfalfaGEDB | MS.gene70596

M. sativa cultivar XinJiangDaYe / MS.gene70596

KEGG: K02996
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00380.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70596.t1	XP_013461035.1	96.3	270	9	1	1	269	82	351	2.20E-139	505

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70596.t1	Q8L6Z4	69.1	178	52	2	95	269	199	376	8.4e-63	241.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70596.t1	A0A072UZ40	96.3	270	9	1	1	269	82	351	1.6e-139	505.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049887	MS.gene70596	0.833845	4.22E-56	-1.69E-46
MS.gene050114	MS.gene70596	0.821355	4.22E-53	-1.69E-46
MS.gene050277	MS.gene70596	0.805552	1.26E-49	-1.69E-46
MS.gene050317	MS.gene70596	0.815872	7.40E-52	-1.69E-46
MS.gene050838	MS.gene70596	0.870284	1.64E-66	-1.69E-46
MS.gene051063	MS.gene70596	0.81368	2.26E-51	-1.69E-46
MS.gene051233	MS.gene70596	0.815063	1.12E-51	-1.69E-46
MS.gene051234	MS.gene70596	0.815557	8.70E-52	-1.69E-46
MS.gene051381	MS.gene70596	0.803369	3.60E-49	-1.69E-46
MS.gene051746	MS.gene70596	0.826406	2.76E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70596.t1	MTR_3g078370	96.296	270	9	1	1	269	82	351	0.0	515

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene70596.t1	AT3G49080	57.563	238	86	5	42	269	144	376	5.89e-76	238

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Find 72 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTGGTTAGAAGAAA+AGG	0.368505	3.1:+64286222	MS.gene70596:CDS
AAAGATCTTAAAGATGTTGA+TGG	0.382922	3.1:+64286820	MS.gene70596:CDS
AAATGGTGGTTAGAAGAAAA+GGG	0.502327	3.1:+64286223	MS.gene70596:CDS
AAGATCTTAAAGATGTTGAT+GGG	0.585151	3.1:+64286821	MS.gene70596:CDS
AAGGAAACTGAGGTTAAAGA+TGG	0.540127	3.1:+64286289	MS.gene70596:CDS
AAGGGACGTGCCTATGGAAC+CGG	0.462628	3.1:+64286970	MS.gene70596:CDS
AATACTGGCAAATCCACCAG+AGG	0.729786	3.1:+64286886	MS.gene70596:CDS
AATCTTGATGGGATGAATGA+AGG	0.577942	3.1:+64286157	None:intergenic
AATGCAGTATAGCACGTGTG+TGG	0.584778	3.1:+64287001	MS.gene70596:CDS
AATGGAGCGTCTAAAGCAAG+AGG	0.669910	3.1:+64286912	MS.gene70596:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGGTGGTTAGAAGAAA+AGG	+	chr3.1:64286222-64286241	MS.gene70596:CDS	30.0%
AAATGGTGGTTAGAAGAAAA+GGG	+	chr3.1:64286223-64286242	MS.gene70596:CDS	30.0%
ATGAAACTGAATTGTTGTCA+AGG	+	chr3.1:64286686-64286705	MS.gene70596:intron	30.0%
ATTTGAACGTGAATGTTGAA+TGG	+	chr3.1:64286637-64286656	MS.gene70596:intron	30.0%
CTAACAAGTAACAACAAAAG+GGG	-	chr3.1:64286545-64286564	None:intergenic	30.0%
TTTAGACATTGTTGAAGGTT+TGG	+	chr3.1:64286574-64286593	MS.gene70596:intron	30.0%
AAGGAAACTGAGGTTAAAGA+TGG	+	chr3.1:64286289-64286308	MS.gene70596:CDS	35.0%
AATGTCTTAGTCTCAGAGAA+AGG	-	chr3.1:64287117-64287136	None:intergenic	35.0%
ACCATAAATTTACCGTTACC+AGG	-	chr3.1:64287033-64287052	None:intergenic	35.0%
AGGAATTGATAAGGAAACTG+AGG	+	chr3.1:64286279-64286298	MS.gene70596:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	64286169	64287203	64286169	ID=MS.gene70596
chr3.1	mRNA	64286169	64287203	64286169	ID=MS.gene70596.t1;Parent=MS.gene70596
chr3.1	exon	64286169	64286529	64286169	ID=MS.gene70596.t1.exon1;Parent=MS.gene70596.t1
chr3.1	CDS	64286169	64286529	64286169	ID=cds.MS.gene70596.t1;Parent=MS.gene70596.t1
chr3.1	exon	64286746	64287203	64286746	ID=MS.gene70596.t1.exon2;Parent=MS.gene70596.t1
chr3.1	CDS	64286746	64287203	64286746	ID=cds.MS.gene70596.t1;Parent=MS.gene70596.t1

Gene Sequence

>MS.gene70596

ATGAATGAAGGTGAAGGAGGGGAGAGAGTGAGGAAGGAAGTTGATGATGAACAAAAATGGTGGTTAGAAGAAAAGGGTATTGATAATGAAGAAGAGGATGCTTTGTTTAAAGGAATTGATAAGGAAACTGAGGTTAAAGATGGTGAAAGTGGTGATTTTGGTGACCATATTGGTGTTGGAGCAGATAATGTTGATGAACCTTGGAATTTGAAAGAGGATACTGGTGATGTTTTTGGTTTCAAAGAGGATGATGATGTGAGTAAGGAGGAGGTTGGTGAGCTTAATGTTGTCGAGGGTCCGAGTCAAGAGGAAGTTCAGAAGCTTGAGAAGGAAGAGAAAGAGCTCATTGCTGTTCTCGAAGGTTTGGCTTAAACCCCTTTTGTTGTTACTTGTTAGTTTGTTAGTTTTAGACATTGTTGAAGGTTTGGTGTAACGAATTGATGTACTGTTGAAGATTTTCTAGATATAATTTGAACGTGAATGTTGAATGGAATCGAAAGGTGTTGCGATATATTGAATGAAACTGAATTGTTGTCAAGGTGAGTGATGTCATGTTTTTGCTGTATTGTGACTGCAGGAACGAAAGCTTTTGGTGACTTGATTGCTGCTTCTGGAATCACCGACGAAATGCTCGAGAGTTTGATTGCGTTGAAAGATCTTAAAGATGTTGATGGGTTGCCACCTCTTAGTGAAATAGAGAAAATGCGCTATGAGAGGAATACTGGCAAATCCACCAGAGGTGAAATGGAGCGTCTAAAGCAAGAGGAAGCGGCGAAAGCTAGAGTGAGACAAGTAGATGATAAGGGACGTGCCTATGGAACCGGAAGGAGAAAATGCAGTATAGCACGTGTGTGGGTTCAGCCTGGTAACGGTAAATTTATGGTTAACGATAAAGAGTTTGACGTCTATTTCCCCATGCTCGATCATCGTGCTACTCTCCTTAGACCTTTCTCTGAGACTAAGACATTGGGGCTCTGGGATGTTAATTGTACCGTGAAAGGTGGTGGTGTTTCAGGTATAGTTAATGACTTTTAA

Protein sequence

>MS.gene70596.t1

MNEGEGGERVRKEVDDEQKWWLEEKGIDNEEEDALFKGIDKETEVKDGESGDFGDHIGVGADNVDEPWNLKEDTGDVFGFKEDDDVSKEEVGELNVVEGPSQEEVQKLEKEEKELIAVLEGTKAFGDLIAASGITDEMLESLIALKDLKDVDGLPPLSEIEKMRYERNTGKSTRGEMERLKQEEAAKARVRQVDDKGRAYGTGRRKCSIARVWVQPGNGKFMVNDKEFDVYFPMLDHRATLLRPFSETKTLGLWDVNCTVKGGGVSGIVNDF