Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70596.t1 | XP_013461035.1 | 96.3 | 270 | 9 | 1 | 1 | 269 | 82 | 351 | 2.20E-139 | 505 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70596.t1 | Q8L6Z4 | 69.1 | 178 | 52 | 2 | 95 | 269 | 199 | 376 | 8.4e-63 | 241.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70596.t1 | A0A072UZ40 | 96.3 | 270 | 9 | 1 | 1 | 269 | 82 | 351 | 1.6e-139 | 505.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene70596 | 0.833845 | 4.22E-56 | -1.69E-46 |
| MS.gene050114 | MS.gene70596 | 0.821355 | 4.22E-53 | -1.69E-46 |
| MS.gene050277 | MS.gene70596 | 0.805552 | 1.26E-49 | -1.69E-46 |
| MS.gene050317 | MS.gene70596 | 0.815872 | 7.40E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene70596 | 0.870284 | 1.64E-66 | -1.69E-46 |
| MS.gene051063 | MS.gene70596 | 0.81368 | 2.26E-51 | -1.69E-46 |
| MS.gene051233 | MS.gene70596 | 0.815063 | 1.12E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene70596 | 0.815557 | 8.70E-52 | -1.69E-46 |
| MS.gene051381 | MS.gene70596 | 0.803369 | 3.60E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene70596 | 0.826406 | 2.76E-54 | -1.69E-46 |
| MS.gene051748 | MS.gene70596 | 0.847822 | 9.07E-60 | -1.69E-46 |
| MS.gene051850 | MS.gene70596 | 0.828658 | 7.96E-55 | -1.69E-46 |
| MS.gene051885 | MS.gene70596 | 0.811974 | 5.35E-51 | -1.69E-46 |
| MS.gene051902 | MS.gene70596 | 0.804752 | 1.86E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene70596 | 0.818544 | 1.85E-52 | -1.69E-46 |
| MS.gene052335 | MS.gene70596 | 0.804557 | 2.04E-49 | -1.69E-46 |
| MS.gene052397 | MS.gene70596 | 0.827797 | 1.28E-54 | -1.69E-46 |
| MS.gene052947 | MS.gene70596 | 0.819153 | 1.35E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene70596 | 0.82371 | 1.20E-53 | -1.69E-46 |
| MS.gene053109 | MS.gene70596 | 0.815985 | 6.98E-52 | -1.69E-46 |
| MS.gene053786 | MS.gene70596 | 0.808772 | 2.63E-50 | -1.69E-46 |
| MS.gene053952 | MS.gene70596 | 0.809033 | 2.31E-50 | -1.69E-46 |
| MS.gene055174 | MS.gene70596 | 0.815063 | 1.12E-51 | -1.69E-46 |
| MS.gene055424 | MS.gene70596 | 0.829282 | 5.62E-55 | -1.69E-46 |
| MS.gene056043 | MS.gene70596 | -0.800631 | 1.32E-48 | -1.69E-46 |
| MS.gene056075 | MS.gene70596 | 0.810253 | 1.26E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene70596 | 0.810479 | 1.13E-50 | -1.69E-46 |
| MS.gene056432 | MS.gene70596 | 0.81903 | 1.44E-52 | -1.69E-46 |
| MS.gene056752 | MS.gene70596 | 0.8353 | 1.82E-56 | -1.69E-46 |
| MS.gene056764 | MS.gene70596 | 0.801849 | 7.42E-49 | -1.69E-46 |
| MS.gene056992 | MS.gene70596 | 0.801164 | 1.02E-48 | -1.69E-46 |
| MS.gene057057 | MS.gene70596 | 0.834942 | 2.24E-56 | -1.69E-46 |
| MS.gene057094 | MS.gene70596 | 0.854035 | 1.61E-61 | -1.69E-46 |
| MS.gene057234 | MS.gene70596 | 0.810001 | 1.43E-50 | -1.69E-46 |
| MS.gene057452 | MS.gene70596 | -0.812826 | 3.49E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene70596 | 0.802354 | 5.84E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene70596 | 0.803012 | 4.27E-49 | -1.69E-46 |
| MS.gene058074 | MS.gene70596 | 0.838374 | 2.99E-57 | -1.69E-46 |
| MS.gene058238 | MS.gene70596 | 0.81363 | 2.32E-51 | -1.69E-46 |
| MS.gene058261 | MS.gene70596 | 0.802109 | 6.56E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene70596 | 0.803911 | 2.78E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene70596 | 0.81155 | 6.62E-51 | -1.69E-46 |
| MS.gene058758 | MS.gene70596 | 0.821793 | 3.34E-53 | -1.69E-46 |
| MS.gene05880 | MS.gene70596 | 0.800455 | 1.43E-48 | -1.69E-46 |
| MS.gene059171 | MS.gene70596 | 0.850653 | 1.48E-60 | -1.69E-46 |
| MS.gene06001 | MS.gene70596 | 0.8341 | 3.64E-56 | -1.69E-46 |
| MS.gene060563 | MS.gene70596 | 0.802451 | 5.58E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene70596 | 0.823013 | 1.74E-53 | -1.69E-46 |
| MS.gene061006 | MS.gene70596 | 0.822587 | 2.19E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70596.t1 | MTR_3g078370 | 96.296 | 270 | 9 | 1 | 1 | 269 | 82 | 351 | 0.0 | 515 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70596.t1 | AT3G49080 | 57.563 | 238 | 86 | 5 | 42 | 269 | 144 | 376 | 5.89e-76 | 238 |
Find 72 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTGGTAACGGTAAATTTA+TGG | 0.138790 | 3.1:+64287029 | MS.gene70596:CDS |
| GAAGAGGATGCTTTGTTTAA+AGG | 0.164710 | 3.1:+64286259 | MS.gene70596:CDS |
| GTGAAAGGTGGTGGTGTTTC+AGG | 0.217283 | 3.1:+64287162 | MS.gene70596:CDS |
| GGTGACTTGATTGCTGCTTC+TGG | 0.228441 | 3.1:+64286760 | MS.gene70596:CDS |
| GATGGTGAAAGTGGTGATTT+TGG | 0.309890 | 3.1:+64286307 | MS.gene70596:CDS |
| AAAATGGTGGTTAGAAGAAA+AGG | 0.368505 | 3.1:+64286222 | MS.gene70596:CDS |
| AGACTAAGACATTGGGGCTC+TGG | 0.370218 | 3.1:+64287124 | MS.gene70596:CDS |
| AGTGAGACAAGTAGATGATA+AGG | 0.379415 | 3.1:+64286951 | MS.gene70596:CDS |
| AAAGATCTTAAAGATGTTGA+TGG | 0.382922 | 3.1:+64286820 | MS.gene70596:CDS |
| TTCTCTGAGACTAAGACATT+GGG | 0.395628 | 3.1:+64287117 | MS.gene70596:CDS |
| AGAGGATGATGATGTGAGTA+AGG | 0.404212 | 3.1:+64286411 | MS.gene70596:CDS |
| CAAATCCACCAGAGGTGAAA+TGG | 0.404466 | 3.1:+64286894 | MS.gene70596:CDS |
| TGAAACACCACCACCTTTCA+CGG | 0.413786 | 3.1:-64287160 | None:intergenic |
| TGGAATTTGAAAGAGGATAC+TGG | 0.418798 | 3.1:+64286370 | MS.gene70596:CDS |
| TTTGTTTAAAGGAATTGATA+AGG | 0.420765 | 3.1:+64286270 | MS.gene70596:CDS |
| TAGTCTCAGAGAAAGGTCTA+AGG | 0.428550 | 3.1:-64287107 | None:intergenic |
| ATGCGCTATGAGAGGAATAC+TGG | 0.445921 | 3.1:+64286871 | MS.gene70596:CDS |
| GACTAAGACATTGGGGCTCT+GGG | 0.446729 | 3.1:+64287125 | MS.gene70596:CDS |
| TAGACGCTCCATTTCACCTC+TGG | 0.447888 | 3.1:-64286902 | None:intergenic |
| GTGAAGGAGGGGAGAGAGTG+AGG | 0.453262 | 3.1:+64286179 | MS.gene70596:CDS |
| AAGGGACGTGCCTATGGAAC+CGG | 0.462628 | 3.1:+64286970 | MS.gene70596:CDS |
| GGGATGAATGAAGGTGAAGG+AGG | 0.464929 | 3.1:+64286166 | None:intergenic |
| GTGAGACAAGTAGATGATAA+GGG | 0.465382 | 3.1:+64286952 | MS.gene70596:CDS |
| AGGAGGGGAGAGAGTGAGGA+AGG | 0.465845 | 3.1:+64286183 | MS.gene70596:CDS |
| TTTCTCTGAGACTAAGACAT+TGG | 0.467627 | 3.1:+64287116 | MS.gene70596:CDS |
| TATCTGCTCCAACACCAATA+TGG | 0.469968 | 3.1:-64286333 | None:intergenic |
| ACCATAAATTTACCGTTACC+AGG | 0.475003 | 3.1:-64287030 | None:intergenic |
| GGATGAATGAAGGTGAAGGA+GGG | 0.475747 | 3.1:+64286167 | None:intergenic |
| GATGATAAGGGACGTGCCTA+TGG | 0.478544 | 3.1:+64286964 | MS.gene70596:CDS |
| ACTGCAGGAACGAAAGCTTT+TGG | 0.489898 | 3.1:+64286739 | MS.gene70596:intron |
| TTTGGTGACCATATTGGTGT+TGG | 0.496594 | 3.1:+64286325 | MS.gene70596:CDS |
| ACGCTCCATTTCACCTCTGG+TGG | 0.497185 | 3.1:-64286899 | None:intergenic |
| CAGATAATGTTGATGAACCT+TGG | 0.500891 | 3.1:+64286350 | MS.gene70596:CDS |
| AAATGGTGGTTAGAAGAAAA+GGG | 0.502327 | 3.1:+64286223 | MS.gene70596:CDS |
| GCGTCTAAAGCAAGAGGAAG+CGG | 0.519797 | 3.1:+64286918 | MS.gene70596:CDS |
| TGAACCTTGGAATTTGAAAG+AGG | 0.523153 | 3.1:+64286363 | MS.gene70596:CDS |
| GTATCCTCTTTCAAATTCCA+AGG | 0.528823 | 3.1:-64286367 | None:intergenic |
| TTCTGAACTTCCTCTTGACT+CGG | 0.532049 | 3.1:-64286466 | None:intergenic |
| AAGGAAACTGAGGTTAAAGA+TGG | 0.540127 | 3.1:+64286289 | MS.gene70596:CDS |
| TTCTCTATTTCACTAAGAGG+TGG | 0.550263 | 3.1:-64286847 | None:intergenic |
| GAGCTCATTGCTGTTCTCGA+AGG | 0.551281 | 3.1:+64286508 | MS.gene70596:CDS |
| AGTAGCACGATGATCGAGCA+TGG | 0.555558 | 3.1:-64287082 | None:intergenic |
| AATGTCTTAGTCTCAGAGAA+AGG | 0.565528 | 3.1:-64287114 | None:intergenic |
| GGGTATTGATAATGAAGAAG+AGG | 0.566295 | 3.1:+64286243 | MS.gene70596:CDS |
| GCACGTGTGTGGGTTCAGCC+TGG | 0.568099 | 3.1:+64287012 | MS.gene70596:CDS |
| TGGTGAGCTTAATGTTGTCG+AGG | 0.568877 | 3.1:+64286441 | MS.gene70596:CDS |
| GGATGATGATGTGAGTAAGG+AGG | 0.571155 | 3.1:+64286414 | MS.gene70596:CDS |
| GTAGCACGATGATCGAGCAT+GGG | 0.575752 | 3.1:-64287081 | None:intergenic |
| GATGAATGAAGGTGAAGGAG+GGG | 0.576275 | 3.1:+64286168 | None:intergenic |
| AATCTTGATGGGATGAATGA+AGG | 0.577942 | 3.1:+64286157 | None:intergenic |
| GTGTGGGTTCAGCCTGGTAA+CGG | 0.579940 | 3.1:+64287018 | MS.gene70596:CDS |
| AGGAATTGATAAGGAAACTG+AGG | 0.581256 | 3.1:+64286279 | MS.gene70596:CDS |
| GAGGTTAAAGATGGTGAAAG+TGG | 0.584687 | 3.1:+64286298 | MS.gene70596:CDS |
| AATGCAGTATAGCACGTGTG+TGG | 0.584778 | 3.1:+64287001 | MS.gene70596:CDS |
| AAGATCTTAAAGATGTTGAT+GGG | 0.585151 | 3.1:+64286821 | MS.gene70596:CDS |
| AATTGTACCGTGAAAGGTGG+TGG | 0.586653 | 3.1:+64287153 | MS.gene70596:CDS |
| TGATGATGTGAGTAAGGAGG+AGG | 0.588163 | 3.1:+64286417 | MS.gene70596:CDS |
| GGTGAGCTTAATGTTGTCGA+GGG | 0.589292 | 3.1:+64286442 | MS.gene70596:CDS |
| GGAAGTTCAGAAGCTTGAGA+AGG | 0.603977 | 3.1:+64286477 | MS.gene70596:CDS |
| TAGAGAAAATGCGCTATGAG+AGG | 0.604354 | 3.1:+64286863 | MS.gene70596:CDS |
| ATGCAGTATAGCACGTGTGT+GGG | 0.611437 | 3.1:+64287002 | MS.gene70596:CDS |
| GATGTTAATTGTACCGTGAA+AGG | 0.611552 | 3.1:+64287147 | MS.gene70596:CDS |
| CAAACTCTCGAGCATTTCGT+CGG | 0.612874 | 3.1:-64286788 | None:intergenic |
| TAGCACGATGATCGAGCATG+GGG | 0.649555 | 3.1:-64287080 | None:intergenic |
| GATGTGAGTAAGGAGGAGGT+TGG | 0.653294 | 3.1:+64286421 | MS.gene70596:CDS |
| TGTCGAGGGTCCGAGTCAAG+AGG | 0.658139 | 3.1:+64286456 | MS.gene70596:CDS |
| TCTCTGAGACTAAGACATTG+GGG | 0.658850 | 3.1:+64287118 | MS.gene70596:CDS |
| AATGGAGCGTCTAAAGCAAG+AGG | 0.669910 | 3.1:+64286912 | MS.gene70596:CDS |
| GATGGGATGAATGAAGGTGA+AGG | 0.675149 | 3.1:+64286163 | None:intergenic |
| GTTAATTGTACCGTGAAAGG+TGG | 0.683961 | 3.1:+64287150 | MS.gene70596:CDS |
| GACGTGCCTATGGAACCGGA+AGG | 0.727860 | 3.1:+64286974 | MS.gene70596:CDS |
| AATACTGGCAAATCCACCAG+AGG | 0.729786 | 3.1:+64286886 | MS.gene70596:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTTTAAAGGAATTGATA+AGG | + | chr3.1:64286270-64286289 | MS.gene70596:CDS | 20.0% |
| ! | AAAGATCTTAAAGATGTTGA+TGG | + | chr3.1:64286820-64286839 | MS.gene70596:CDS | 25.0% |
| ! | AACTAACAAGTAACAACAAA+AGG | - | chr3.1:64286547-64286566 | None:intergenic | 25.0% |
| ! | AAGATCTTAAAGATGTTGAT+GGG | + | chr3.1:64286821-64286840 | MS.gene70596:CDS | 25.0% |
| ! | ACTAACAAGTAACAACAAAA+GGG | - | chr3.1:64286546-64286565 | None:intergenic | 25.0% |
| !! | ATTTTCTCTATTTCACTAAG+AGG | - | chr3.1:64286853-64286872 | None:intergenic | 25.0% |
| !!! | AAGTTGATGATGAACAAAAA+TGG | + | chr3.1:64286206-64286225 | MS.gene70596:CDS | 25.0% |
| !!! | TTAGTTTTAGACATTGTTGA+AGG | + | chr3.1:64286569-64286588 | MS.gene70596:intron | 25.0% |
| AAAATGGTGGTTAGAAGAAA+AGG | + | chr3.1:64286222-64286241 | MS.gene70596:CDS | 30.0% | |
| AAATGGTGGTTAGAAGAAAA+GGG | + | chr3.1:64286223-64286242 | MS.gene70596:CDS | 30.0% | |
| ATGAAACTGAATTGTTGTCA+AGG | + | chr3.1:64286686-64286705 | MS.gene70596:intron | 30.0% | |
| ATTTGAACGTGAATGTTGAA+TGG | + | chr3.1:64286637-64286656 | MS.gene70596:intron | 30.0% | |
| CTAACAAGTAACAACAAAAG+GGG | - | chr3.1:64286545-64286564 | None:intergenic | 30.0% | |
| TTTAGACATTGTTGAAGGTT+TGG | + | chr3.1:64286574-64286593 | MS.gene70596:intron | 30.0% | |
| !! | TTGATGATGAACAAAAATGG+TGG | + | chr3.1:64286209-64286228 | MS.gene70596:CDS | 30.0% |
| !!! | TGATGTTTTTGGTTTCAAAG+AGG | + | chr3.1:64286393-64286412 | MS.gene70596:CDS | 30.0% |
| AAGGAAACTGAGGTTAAAGA+TGG | + | chr3.1:64286289-64286308 | MS.gene70596:CDS | 35.0% | |
| AATGTCTTAGTCTCAGAGAA+AGG | - | chr3.1:64287117-64287136 | None:intergenic | 35.0% | |
| ACCATAAATTTACCGTTACC+AGG | - | chr3.1:64287033-64287052 | None:intergenic | 35.0% | |
| AGGAATTGATAAGGAAACTG+AGG | + | chr3.1:64286279-64286298 | MS.gene70596:CDS | 35.0% | |
| AGTGAGACAAGTAGATGATA+AGG | + | chr3.1:64286951-64286970 | MS.gene70596:CDS | 35.0% | |
| GAATGTTGAATGGAATCGAA+AGG | + | chr3.1:64286647-64286666 | MS.gene70596:intron | 35.0% | |
| GATGTTAATTGTACCGTGAA+AGG | + | chr3.1:64287147-64287166 | MS.gene70596:CDS | 35.0% | |
| GTATCCTCTTTCAAATTCCA+AGG | - | chr3.1:64286370-64286389 | None:intergenic | 35.0% | |
| GTGAGACAAGTAGATGATAA+GGG | + | chr3.1:64286952-64286971 | MS.gene70596:CDS | 35.0% | |
| TGAACCTTGGAATTTGAAAG+AGG | + | chr3.1:64286363-64286382 | MS.gene70596:CDS | 35.0% | |
| TGGAATTTGAAAGAGGATAC+TGG | + | chr3.1:64286370-64286389 | MS.gene70596:CDS | 35.0% | |
| TTCTCTATTTCACTAAGAGG+TGG | - | chr3.1:64286850-64286869 | None:intergenic | 35.0% | |
| ! | CAGATAATGTTGATGAACCT+TGG | + | chr3.1:64286350-64286369 | MS.gene70596:CDS | 35.0% |
| ! | TATACTGCATTTTCTCCTTC+CGG | - | chr3.1:64286992-64287011 | None:intergenic | 35.0% |
| !! | GAAGAGGATGCTTTGTTTAA+AGG | + | chr3.1:64286259-64286278 | MS.gene70596:CDS | 35.0% |
| !! | GGGTATTGATAATGAAGAAG+AGG | + | chr3.1:64286243-64286262 | MS.gene70596:CDS | 35.0% |
| !! | TTCTCTGAGACTAAGACATT+GGG | + | chr3.1:64287117-64287136 | MS.gene70596:CDS | 35.0% |
| !! | TTTCTCTGAGACTAAGACAT+TGG | + | chr3.1:64287116-64287135 | MS.gene70596:CDS | 35.0% |
| GAGGTTAAAGATGGTGAAAG+TGG | + | chr3.1:64286298-64286317 | MS.gene70596:CDS | 40.0% | |
| GTTAATTGTACCGTGAAAGG+TGG | + | chr3.1:64287150-64287169 | MS.gene70596:CDS | 40.0% | |
| TAGAGAAAATGCGCTATGAG+AGG | + | chr3.1:64286863-64286882 | MS.gene70596:CDS | 40.0% | |
| TAGTCTCAGAGAAAGGTCTA+AGG | - | chr3.1:64287110-64287129 | None:intergenic | 40.0% | |
| TATCTGCTCCAACACCAATA+TGG | - | chr3.1:64286336-64286355 | None:intergenic | 40.0% | |
| TTCTGAACTTCCTCTTGACT+CGG | - | chr3.1:64286469-64286488 | None:intergenic | 40.0% | |
| ! | AGAGGATGATGATGTGAGTA+AGG | + | chr3.1:64286411-64286430 | MS.gene70596:CDS | 40.0% |
| ! | GATGGTGAAAGTGGTGATTT+TGG | + | chr3.1:64286307-64286326 | MS.gene70596:CDS | 40.0% |
| ! | TTTGGTGACCATATTGGTGT+TGG | + | chr3.1:64286325-64286344 | MS.gene70596:CDS | 40.0% |
| !! | GAGGATACTGGTGATGTTTT+TGG | + | chr3.1:64286382-64286401 | MS.gene70596:CDS | 40.0% |
| !! | GCCTGGTAACGGTAAATTTA+TGG | + | chr3.1:64287029-64287048 | MS.gene70596:CDS | 40.0% |
| !! | GGTGATTTTGGTGACCATAT+TGG | + | chr3.1:64286319-64286338 | MS.gene70596:CDS | 40.0% |
| !! | TCTCTGAGACTAAGACATTG+GGG | + | chr3.1:64287118-64287137 | MS.gene70596:CDS | 40.0% |
| !! | TTTTGCTGTATTGTGACTGC+AGG | + | chr3.1:64286724-64286743 | MS.gene70596:intron | 40.0% |
| AATACTGGCAAATCCACCAG+AGG | + | chr3.1:64286886-64286905 | MS.gene70596:CDS | 45.0% | |
| AATGCAGTATAGCACGTGTG+TGG | + | chr3.1:64287001-64287020 | MS.gene70596:CDS | 45.0% | |
| AATTGTACCGTGAAAGGTGG+TGG | + | chr3.1:64287153-64287172 | MS.gene70596:CDS | 45.0% | |
| ATGCAGTATAGCACGTGTGT+GGG | + | chr3.1:64287002-64287021 | MS.gene70596:CDS | 45.0% | |
| ATGCGCTATGAGAGGAATAC+TGG | + | chr3.1:64286871-64286890 | MS.gene70596:CDS | 45.0% | |
| CAAACTCTCGAGCATTTCGT+CGG | - | chr3.1:64286791-64286810 | None:intergenic | 45.0% | |
| CAAATCCACCAGAGGTGAAA+TGG | + | chr3.1:64286894-64286913 | MS.gene70596:CDS | 45.0% | |
| GGAAGTTCAGAAGCTTGAGA+AGG | + | chr3.1:64286477-64286496 | MS.gene70596:CDS | 45.0% | |
| GGTGAGCTTAATGTTGTCGA+GGG | + | chr3.1:64286442-64286461 | MS.gene70596:CDS | 45.0% | |
| TGAAACACCACCACCTTTCA+CGG | - | chr3.1:64287163-64287182 | None:intergenic | 45.0% | |
| TGGTGAGCTTAATGTTGTCG+AGG | + | chr3.1:64286441-64286460 | MS.gene70596:CDS | 45.0% | |
| ! | AATGGAGCGTCTAAAGCAAG+AGG | + | chr3.1:64286912-64286931 | MS.gene70596:CDS | 45.0% |
| ! | ACTGCAGGAACGAAAGCTTT+TGG | + | chr3.1:64286739-64286758 | MS.gene70596:intron | 45.0% |
| ! | CATTGCTGTTCTCGAAGGTT+TGG | + | chr3.1:64286513-64286532 | MS.gene70596:intron | 45.0% |
| ! | GGATGATGATGTGAGTAAGG+AGG | + | chr3.1:64286414-64286433 | MS.gene70596:CDS | 45.0% |
| ! | TGATGATGTGAGTAAGGAGG+AGG | + | chr3.1:64286417-64286436 | MS.gene70596:CDS | 45.0% |
| ! | TTTTCTCCTTCCGGTTCCAT+AGG | - | chr3.1:64286983-64287002 | None:intergenic | 45.0% |
| AGACTAAGACATTGGGGCTC+TGG | + | chr3.1:64287124-64287143 | MS.gene70596:CDS | 50.0% | |
| AGTAGCACGATGATCGAGCA+TGG | - | chr3.1:64287085-64287104 | None:intergenic | 50.0% | |
| GACTAAGACATTGGGGCTCT+GGG | + | chr3.1:64287125-64287144 | MS.gene70596:CDS | 50.0% | |
| GATGATAAGGGACGTGCCTA+TGG | + | chr3.1:64286964-64286983 | MS.gene70596:CDS | 50.0% | |
| GATGTGAGTAAGGAGGAGGT+TGG | + | chr3.1:64286421-64286440 | MS.gene70596:CDS | 50.0% | |
| GTAGCACGATGATCGAGCAT+GGG | - | chr3.1:64287084-64287103 | None:intergenic | 50.0% | |
| TAGACGCTCCATTTCACCTC+TGG | - | chr3.1:64286905-64286924 | None:intergenic | 50.0% | |
| TAGCACGATGATCGAGCATG+GGG | - | chr3.1:64287083-64287102 | None:intergenic | 50.0% | |
| ! | GAGCTCATTGCTGTTCTCGA+AGG | + | chr3.1:64286508-64286527 | MS.gene70596:CDS | 50.0% |
| ! | GCGTCTAAAGCAAGAGGAAG+CGG | + | chr3.1:64286918-64286937 | MS.gene70596:CDS | 50.0% |
| ! | GGTGACTTGATTGCTGCTTC+TGG | + | chr3.1:64286760-64286779 | MS.gene70596:CDS | 50.0% |
| ! | GTGAAAGGTGGTGGTGTTTC+AGG | + | chr3.1:64287162-64287181 | MS.gene70596:CDS | 50.0% |
| AAGGGACGTGCCTATGGAAC+CGG | + | chr3.1:64286970-64286989 | MS.gene70596:CDS | 55.0% | |
| ACGCTCCATTTCACCTCTGG+TGG | - | chr3.1:64286902-64286921 | None:intergenic | 55.0% | |
| GTGTGGGTTCAGCCTGGTAA+CGG | + | chr3.1:64287018-64287037 | MS.gene70596:CDS | 55.0% | |
| AGGAGGGGAGAGAGTGAGGA+AGG | + | chr3.1:64286183-64286202 | MS.gene70596:CDS | 60.0% | |
| GACGTGCCTATGGAACCGGA+AGG | + | chr3.1:64286974-64286993 | MS.gene70596:CDS | 60.0% | |
| GTGAAGGAGGGGAGAGAGTG+AGG | + | chr3.1:64286179-64286198 | MS.gene70596:CDS | 60.0% | |
| TGTCGAGGGTCCGAGTCAAG+AGG | + | chr3.1:64286456-64286475 | MS.gene70596:CDS | 60.0% | |
| GCACGTGTGTGGGTTCAGCC+TGG | + | chr3.1:64287012-64287031 | MS.gene70596:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 64286169 | 64287203 | 64286169 | ID=MS.gene70596 |
| chr3.1 | mRNA | 64286169 | 64287203 | 64286169 | ID=MS.gene70596.t1;Parent=MS.gene70596 |
| chr3.1 | exon | 64286169 | 64286529 | 64286169 | ID=MS.gene70596.t1.exon1;Parent=MS.gene70596.t1 |
| chr3.1 | CDS | 64286169 | 64286529 | 64286169 | ID=cds.MS.gene70596.t1;Parent=MS.gene70596.t1 |
| chr3.1 | exon | 64286746 | 64287203 | 64286746 | ID=MS.gene70596.t1.exon2;Parent=MS.gene70596.t1 |
| chr3.1 | CDS | 64286746 | 64287203 | 64286746 | ID=cds.MS.gene70596.t1;Parent=MS.gene70596.t1 |
| Gene Sequence |
| Protein sequence |
