Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71523.t1 | XP_003601575.2 | 91 | 542 | 16 | 2 | 1 | 519 | 121 | 652 | 6.80E-291 | 1009.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71523.t1 | F4IFC5 | 78.2 | 542 | 85 | 2 | 1 | 519 | 119 | 650 | 1.8e-260 | 899.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71523.t1 | G7J9I7 | 91.0 | 542 | 16 | 2 | 1 | 519 | 121 | 652 | 4.9e-291 | 1009.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene71523 | 0.813848 | 2.08E-51 | -1.69E-46 |
| MS.gene049356 | MS.gene71523 | 0.814975 | 1.17E-51 | -1.69E-46 |
| MS.gene049369 | MS.gene71523 | 0.823265 | 1.52E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene71523 | 0.807853 | 4.13E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene71523 | 0.80469 | 1.91E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene71523 | 0.80557 | 1.25E-49 | -1.69E-46 |
| MS.gene050770 | MS.gene71523 | 0.810442 | 1.15E-50 | -1.69E-46 |
| MS.gene050971 | MS.gene71523 | 0.813449 | 2.55E-51 | -1.69E-46 |
| MS.gene051228 | MS.gene71523 | 0.846487 | 2.11E-59 | -1.69E-46 |
| MS.gene051471 | MS.gene71523 | 0.809397 | 1.93E-50 | -1.69E-46 |
| MS.gene051617 | MS.gene71523 | 0.806667 | 7.36E-50 | -1.69E-46 |
| MS.gene052078 | MS.gene71523 | 0.833356 | 5.59E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene71523 | 0.832472 | 9.27E-56 | -1.69E-46 |
| MS.gene052290 | MS.gene71523 | 0.858918 | 5.92E-63 | -1.69E-46 |
| MS.gene052310 | MS.gene71523 | 0.81732 | 3.51E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene71523 | 0.813452 | 2.54E-51 | -1.69E-46 |
| MS.gene052379 | MS.gene71523 | 0.81892 | 1.52E-52 | -1.69E-46 |
| MS.gene052870 | MS.gene71523 | 0.840887 | 6.63E-58 | -1.69E-46 |
| MS.gene052872 | MS.gene71523 | 0.823851 | 1.11E-53 | -1.69E-46 |
| MS.gene053009 | MS.gene71523 | 0.817132 | 3.87E-52 | -1.69E-46 |
| MS.gene053103 | MS.gene71523 | 0.802555 | 5.31E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene71523 | 0.825872 | 3.70E-54 | -1.69E-46 |
| MS.gene053384 | MS.gene71523 | 0.846558 | 2.01E-59 | -1.69E-46 |
| MS.gene053449 | MS.gene71523 | 0.801937 | 7.11E-49 | -1.69E-46 |
| MS.gene053557 | MS.gene71523 | 0.806821 | 6.83E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene71523 | 0.831165 | 1.95E-55 | -1.69E-46 |
| MS.gene054123 | MS.gene71523 | 0.834071 | 3.70E-56 | -1.69E-46 |
| MS.gene05494 | MS.gene71523 | 0.81483 | 1.26E-51 | -1.69E-46 |
| MS.gene054955 | MS.gene71523 | 0.803053 | 4.19E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene71523 | 0.825915 | 3.61E-54 | -1.69E-46 |
| MS.gene055254 | MS.gene71523 | 0.837548 | 4.87E-57 | -1.69E-46 |
| MS.gene055277 | MS.gene71523 | 0.823568 | 1.29E-53 | -1.69E-46 |
| MS.gene055397 | MS.gene71523 | 0.81822 | 2.20E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene71523 | 0.804587 | 2.01E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene71523 | 0.841598 | 4.31E-58 | -1.69E-46 |
| MS.gene056609 | MS.gene71523 | 0.867561 | 1.25E-65 | -1.69E-46 |
| MS.gene056659 | MS.gene71523 | 0.81818 | 2.24E-52 | -1.69E-46 |
| MS.gene056719 | MS.gene71523 | 0.84089 | 6.62E-58 | -1.69E-46 |
| MS.gene056897 | MS.gene71523 | 0.813041 | 3.13E-51 | -1.69E-46 |
| MS.gene056903 | MS.gene71523 | 0.816039 | 6.79E-52 | -1.69E-46 |
| MS.gene057129 | MS.gene71523 | 0.814713 | 1.34E-51 | -1.69E-46 |
| MS.gene05735 | MS.gene71523 | 0.832955 | 7.04E-56 | -1.69E-46 |
| MS.gene057926 | MS.gene71523 | 0.836699 | 8.03E-57 | -1.69E-46 |
| MS.gene057927 | MS.gene71523 | 0.813469 | 2.52E-51 | -1.69E-46 |
| MS.gene058006 | MS.gene71523 | 0.825143 | 5.50E-54 | -1.69E-46 |
| MS.gene058082 | MS.gene71523 | 0.855166 | 7.57E-62 | -1.69E-46 |
| MS.gene058293 | MS.gene71523 | 0.808197 | 3.49E-50 | -1.69E-46 |
| MS.gene058365 | MS.gene71523 | 0.818499 | 1.90E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene71523 | 0.808293 | 3.33E-50 | -1.69E-46 |
| MS.gene05959 | MS.gene71523 | 0.82912 | 6.15E-55 | -1.69E-46 |
| MS.gene059676 | MS.gene71523 | 0.815242 | 1.02E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene71523 | 0.805761 | 1.14E-49 | -1.69E-46 |
| MS.gene059692 | MS.gene71523 | 0.824517 | 7.73E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene71523 | 0.821229 | 4.51E-53 | -1.69E-46 |
| MS.gene059708 | MS.gene71523 | 0.829659 | 4.55E-55 | -1.69E-46 |
| MS.gene059711 | MS.gene71523 | 0.800603 | 1.33E-48 | -1.69E-46 |
| MS.gene05986 | MS.gene71523 | 0.801507 | 8.72E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene71523 | 0.82968 | 4.49E-55 | -1.69E-46 |
| MS.gene059960 | MS.gene71523 | 0.804864 | 1.76E-49 | -1.69E-46 |
| MS.gene060496 | MS.gene71523 | 0.804695 | 1.91E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene71523 | 0.820538 | 6.51E-53 | -1.69E-46 |
| MS.gene060818 | MS.gene71523 | 0.852367 | 4.84E-61 | -1.69E-46 |
| MS.gene060832 | MS.gene71523 | 0.82557 | 4.36E-54 | -1.69E-46 |
| MS.gene061041 | MS.gene71523 | 0.846406 | 2.22E-59 | -1.69E-46 |
| MS.gene061051 | MS.gene71523 | -0.818033 | 2.42E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71523.t1 | MTR_3g083180 | 90.959 | 542 | 16 | 2 | 1 | 519 | 121 | 652 | 0.0 | 1011 |
| MS.gene71523.t1 | MTR_5g034820 | 40.000 | 520 | 294 | 7 | 4 | 510 | 190 | 704 | 1.30e-128 | 391 |
| MS.gene71523.t1 | MTR_3g077340 | 36.290 | 124 | 63 | 3 | 48 | 171 | 127 | 234 | 4.91e-14 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71523.t1 | AT2G04842 | 78.229 | 542 | 85 | 2 | 1 | 519 | 119 | 650 | 0.0 | 897 |
| MS.gene71523.t1 | AT2G04842 | 78.229 | 542 | 85 | 2 | 1 | 519 | 119 | 650 | 0.0 | 897 |
| MS.gene71523.t1 | AT5G26830 | 41.718 | 489 | 268 | 8 | 24 | 510 | 229 | 702 | 1.56e-132 | 401 |
| MS.gene71523.t1 | AT1G17960 | 43.253 | 289 | 158 | 3 | 232 | 515 | 96 | 383 | 1.43e-74 | 241 |
| MS.gene71523.t1 | AT1G17960 | 36.154 | 390 | 211 | 7 | 131 | 515 | 100 | 456 | 1.86e-73 | 240 |
| MS.gene71523.t1 | AT1G18130 | 36.800 | 125 | 77 | 2 | 367 | 489 | 17 | 141 | 2.56e-18 | 82.8 |
Find 114 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTGTCCTTATCATATTT+TGG | 0.167424 | 3.4:-78304589 | MS.gene71523:CDS |
| ACCATACAAGATGGAGATTT+TGG | 0.189747 | 3.4:-78306261 | MS.gene71523:CDS |
| GAAGAAACATTATCGCAATT+TGG | 0.236532 | 3.4:-78304049 | MS.gene71523:CDS |
| ATCTATCTTTGGCCCATAAA+AGG | 0.242304 | 3.4:+78303883 | None:intergenic |
| GGATCCTTGGAAAGATTCTT+TGG | 0.273179 | 3.4:-78303065 | MS.gene71523:CDS |
| CTGTCGGAGAAGATGATATA+TGG | 0.278013 | 3.4:-78303982 | MS.gene71523:CDS |
| CCAATGCTGCAAAGGATATA+TGG | 0.287726 | 3.4:-78305135 | MS.gene71523:CDS |
| TCCTTGAAGGCGGGGAGTGG+TGG | 0.306185 | 3.4:-78305263 | MS.gene71523:intron |
| AAAGATGCTTTGGATGATAA+AGG | 0.308143 | 3.4:-78303938 | MS.gene71523:CDS |
| AGTCTATTGCTGGTGCTTAC+TGG | 0.312521 | 3.4:-78305176 | MS.gene71523:CDS |
| CCTGTTAGGGTAGCAGAATT+AGG | 0.317000 | 3.4:-78304531 | MS.gene71523:CDS |
| CCTAATTCTGCTACCCTAAC+AGG | 0.323506 | 3.4:+78304531 | None:intergenic |
| CTCAGCTTTAAAAGATGCTT+TGG | 0.325155 | 3.4:-78303948 | MS.gene71523:CDS |
| TTGGAAGATCAGTGGTCATT+TGG | 0.329279 | 3.4:-78304679 | MS.gene71523:CDS |
| TCAATCTTGACATCTATCTT+TGG | 0.338502 | 3.4:+78303872 | None:intergenic |
| AAGCTAAACGTCGGGATCAT+AGG | 0.344843 | 3.4:-78305059 | MS.gene71523:CDS |
| ACCCATCACAATTATCATAT+TGG | 0.353693 | 3.4:-78306222 | MS.gene71523:CDS |
| TCTGCATTTCTTATGAGCTT+TGG | 0.360438 | 3.4:+78302790 | None:intergenic |
| AGGATCCAAGCACTGCTCTA+TGG | 0.361693 | 3.4:+78303081 | None:intergenic |
| GGTAAAATTCGAGCTTGTAT+TGG | 0.363721 | 3.4:+78302996 | None:intergenic |
| CCATATATCCTTTGCAGCAT+TGG | 0.378495 | 3.4:+78305135 | None:intergenic |
| AAAACAGAAAATTCCATTGA+TGG | 0.380582 | 3.4:-78302767 | MS.gene71523:CDS |
| TAGAGCAGTGCTTGGATCCT+TGG | 0.381818 | 3.4:-78303078 | MS.gene71523:CDS |
| ACTGCTCTATGGATCATTAT+AGG | 0.385013 | 3.4:+78303092 | None:intergenic |
| ACCAGATTAAAGATGAGATC+AGG | 0.388099 | 3.4:-78304090 | MS.gene71523:CDS |
| TCCAAAATCTCCATCTTGTA+TGG | 0.388459 | 3.4:+78306260 | None:intergenic |
| TGAAGCTCATAGAAGAATAT+TGG | 0.390948 | 3.4:-78306293 | MS.gene71523:intron |
| GTCTCACGATAGCACCCTTT+GGG | 0.401539 | 3.4:+78304787 | None:intergenic |
| CCCTGATCTCATCTTTAATC+TGG | 0.414515 | 3.4:+78304089 | None:intergenic |
| ATGCAGGAGGATGCTGGTGG+GGG | 0.414770 | 3.4:-78304825 | MS.gene71523:intron |
| GTTACCTGGGCATCAGTAAC+AGG | 0.414807 | 3.4:+78302975 | None:intergenic |
| GTTGAACTTGAGTCTATTGC+TGG | 0.414953 | 3.4:-78305186 | MS.gene71523:CDS |
| AAACAGTTACCGTTAGATCT+AGG | 0.416384 | 3.4:-78302714 | MS.gene71523:CDS |
| TGTATTGGAGAAAGCCATAA+TGG | 0.417915 | 3.4:+78303011 | None:intergenic |
| TGTCTCACGATAGCACCCTT+TGG | 0.422035 | 3.4:+78304786 | None:intergenic |
| GAAAACTGATAAGAGATAGA+AGG | 0.422202 | 3.4:+78306196 | None:intergenic |
| TCTAGGTTTGGTGGGGAGCT+TGG | 0.423667 | 3.4:-78302697 | MS.gene71523:CDS |
| ATGTGGCAAAAGCTGATCTT+TGG | 0.426316 | 3.4:-78304698 | MS.gene71523:CDS |
| TTGTATACCAAAATATGATA+AGG | 0.433599 | 3.4:+78304582 | None:intergenic |
| CCTTGAAGGCGGGGAGTGGT+GGG | 0.437435 | 3.4:-78305262 | MS.gene71523:intron |
| GGACCTCATGTTGAATCTAC+TGG | 0.441354 | 3.4:-78305228 | MS.gene71523:CDS |
| AGATGAGATCAGGGGTGTCC+TGG | 0.443090 | 3.4:-78304080 | MS.gene71523:CDS |
| CCGTTAGATCTAGGTTTGGT+GGG | 0.445581 | 3.4:-78302705 | MS.gene71523:CDS |
| AAATTGCGATAATGTTTCTT+CGG | 0.448655 | 3.4:+78304051 | None:intergenic |
| TGAAACCTCTAACGCGGAAA+AGG | 0.462420 | 3.4:+78304469 | None:intergenic |
| GTCAAGATTGAGGATGCTCT+TGG | 0.464197 | 3.4:-78303860 | MS.gene71523:CDS |
| ATATGATAAGGACAATTCAT+TGG | 0.481092 | 3.4:+78304594 | None:intergenic |
| ATTCCATTGATGGCTGTTGT+AGG | 0.483364 | 3.4:-78302757 | MS.gene71523:CDS |
| AAGTTAAGGAATTGCCTGTA+TGG | 0.483636 | 3.4:+78303817 | None:intergenic |
| ATGTTTCTTCGGTAAGATCC+AGG | 0.488202 | 3.4:+78304062 | None:intergenic |
| TCAAGATTGAGGATGCTCTT+GGG | 0.492384 | 3.4:-78303859 | MS.gene71523:CDS |
| GTTTATAGATATGAACTGTC+TGG | 0.493569 | 3.4:-78304504 | MS.gene71523:CDS |
| GTTACCGTTAGATCTAGGTT+TGG | 0.501718 | 3.4:-78302709 | MS.gene71523:CDS |
| TATGCAGGAGGATGCTGGTG+GGG | 0.502690 | 3.4:-78304826 | MS.gene71523:intron |
| TACCAATATGATAATTGTGA+TGG | 0.508778 | 3.4:+78306220 | None:intergenic |
| GGACCTATCAAATTGATGAC+GGG | 0.511120 | 3.4:-78303913 | MS.gene71523:CDS |
| TGTCGGAGAAGATGATATAT+GGG | 0.511505 | 3.4:-78303981 | MS.gene71523:CDS |
| CAAAGAAGAAGCTAAACGTC+GGG | 0.511632 | 3.4:-78305067 | MS.gene71523:CDS |
| AAATTTATGCAGGAGGATGC+TGG | 0.512173 | 3.4:-78304831 | MS.gene71523:intron |
| GTGGCAGTGTTCAACCATAC+AGG | 0.514253 | 3.4:-78303831 | MS.gene71523:intron |
| ACAAATCAAGATCTTGTCCT+AGG | 0.517714 | 3.4:+78305034 | None:intergenic |
| AAAGGAAGCGTCATTCCTAT+CGG | 0.520757 | 3.4:-78304560 | MS.gene71523:CDS |
| TTTACCTGTTACTGATGCCC+AGG | 0.525812 | 3.4:-78302979 | MS.gene71523:intron |
| AATGTGTATCATAGTGATGT+TGG | 0.526267 | 3.4:+78302622 | None:intergenic |
| TGGTCATTTGGACTTCTACA+AGG | 0.528039 | 3.4:-78304667 | MS.gene71523:CDS |
| TTCAAATCATTATCTGTCAA+AGG | 0.532452 | 3.4:+78306496 | None:intergenic |
| CGTTAGATCTAGGTTTGGTG+GGG | 0.533169 | 3.4:-78302704 | MS.gene71523:CDS |
| ATGTGTATCATAGTGATGTT+GGG | 0.539155 | 3.4:+78302623 | None:intergenic |
| GCACCTACAACAGCCATCAA+TGG | 0.541514 | 3.4:+78302754 | None:intergenic |
| AAGGAAGCGTCATTCCTATC+GGG | 0.545437 | 3.4:-78304559 | MS.gene71523:CDS |
| AAAGATAGATGTCAAGATTG+AGG | 0.545643 | 3.4:-78303870 | MS.gene71523:CDS |
| AGGATGCTCTTGGGAGAAAG+TGG | 0.546331 | 3.4:-78303850 | MS.gene71523:CDS |
| AAAAGAAACCAATGCTGCAA+AGG | 0.547530 | 3.4:-78305143 | MS.gene71523:CDS |
| ATGCTTTGGATGATAAAGGC+TGG | 0.549323 | 3.4:-78303934 | MS.gene71523:CDS |
| ACCGTTAGATCTAGGTTTGG+TGG | 0.549435 | 3.4:-78302706 | MS.gene71523:CDS |
| AATAAAATCATCAATTGTCA+TGG | 0.549490 | 3.4:+78302672 | None:intergenic |
| GAAGAGAATCAAGAAAGAGA+TGG | 0.552555 | 3.4:-78306476 | MS.gene71523:intron |
| GAGTGGTGGGACCTATGTGC+TGG | 0.554699 | 3.4:-78305249 | MS.gene71523:CDS |
| ACCAATATGATAATTGTGAT+GGG | 0.557554 | 3.4:+78306221 | None:intergenic |
| ATGATCCATAGAGCAGTGCT+TGG | 0.558727 | 3.4:-78303086 | MS.gene71523:CDS |
| CTTGAATGAACCATACAAGA+TGG | 0.568835 | 3.4:-78306270 | MS.gene71523:CDS |
| CTCCATGACAAACCTCAGCT+CGG | 0.569887 | 3.4:+78302821 | None:intergenic |
| CCAGATTAAAGATGAGATCA+GGG | 0.574580 | 3.4:-78304089 | MS.gene71523:CDS |
| CGTCGGGATCATAGGCGCCT+AGG | 0.579199 | 3.4:-78305051 | MS.gene71523:CDS |
| AAAGGATATATGGTACTGCA+TGG | 0.580353 | 3.4:-78305125 | MS.gene71523:CDS |
| AAGCCATAATGGAAAATCAC+CGG | 0.586629 | 3.4:+78303022 | None:intergenic |
| CAACATGAGGTCCAGCACAT+AGG | 0.588542 | 3.4:+78305238 | None:intergenic |
| CTGAGGTTTGTCATGGAGAG+CGG | 0.592957 | 3.4:-78302816 | MS.gene71523:CDS |
| TGGACCTATCAAATTGATGA+CGG | 0.594779 | 3.4:-78303914 | MS.gene71523:CDS |
| TTATGCAGGAGGATGCTGGT+GGG | 0.598218 | 3.4:-78304827 | MS.gene71523:intron |
| CCCACCAAACCTAGATCTAA+CGG | 0.604671 | 3.4:+78302705 | None:intergenic |
| GTTCTTATAGAGCATTATGC+CGG | 0.605410 | 3.4:-78303041 | MS.gene71523:CDS |
| AGCAATAGACTCAAGTTCAA+CGG | 0.609015 | 3.4:+78305188 | None:intergenic |
| TTTCCAGTAGATTCAACATG+AGG | 0.609326 | 3.4:+78305225 | None:intergenic |
| AAAATATGGCATCCGAGCTG+AGG | 0.610578 | 3.4:-78302833 | MS.gene71523:CDS |
| AAGGATATATGGTACTGCAT+GGG | 0.617021 | 3.4:-78305124 | MS.gene71523:CDS |
| ATCCGAGCTGAGGTTTGTCA+TGG | 0.621334 | 3.4:-78302823 | MS.gene71523:CDS |
| TTTATGCAGGAGGATGCTGG+TGG | 0.621910 | 3.4:-78304828 | MS.gene71523:intron |
| AACACCAAAGAATCTTTCCA+AGG | 0.623750 | 3.4:+78303061 | None:intergenic |
| GACCTATCAAATTGATGACG+GGG | 0.628117 | 3.4:-78303912 | MS.gene71523:CDS |
| ATTGCTGGTGCTTACTGGAG+AGG | 0.632091 | 3.4:-78305171 | MS.gene71523:CDS |
| TCAAAGAAGAAGCTAAACGT+CGG | 0.632292 | 3.4:-78305068 | MS.gene71523:CDS |
| GAACTGTCTGGAAGTTTACA+CGG | 0.636774 | 3.4:-78304492 | MS.gene71523:CDS |
| CCTAACAGGAAAATCCCGAT+AGG | 0.646763 | 3.4:+78304545 | None:intergenic |
| GATGGCTGTTGTAGGTGCAA+AGG | 0.659873 | 3.4:-78302749 | MS.gene71523:CDS |
| GCTGATCTTTGGAAGATCAG+TGG | 0.662223 | 3.4:-78304687 | MS.gene71523:CDS |
| ATGAGATAAATTTATCTACA+CGG | 0.670476 | 3.4:-78304015 | MS.gene71523:CDS |
| CCTGTGTGAAACCTCTAACG+CGG | 0.672275 | 3.4:+78304463 | None:intergenic |
| ACCTATCAAATTGATGACGG+GGG | 0.675121 | 3.4:-78303911 | MS.gene71523:CDS |
| TCTATTGTATACACCACATG+TGG | 0.675720 | 3.4:-78304715 | MS.gene71523:CDS |
| CCGCGTTAGAGGTTTCACAC+AGG | 0.685509 | 3.4:-78304463 | MS.gene71523:intron |
| CAATTAGCTTGAATACTGCG+AGG | 0.687613 | 3.4:-78302875 | MS.gene71523:intron |
| CAGATTAAAGATGAGATCAG+GGG | 0.715213 | 3.4:-78304088 | MS.gene71523:CDS |
| TATGTGATGTCAAAACGCTG+TGG | 0.747561 | 3.4:+78303143 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCATAATAAAATAAGTAAT+GGG | + | chr3.4:78304877-78304896 | None:intergenic | 10.0% |
| !! | TTTCATAATAAAATAAGTAA+TGG | + | chr3.4:78304878-78304897 | None:intergenic | 10.0% |
| !!! | TTATTTTATTATGAAATCAA+TGG | - | chr3.4:78304882-78304901 | MS.gene71523:intron | 10.0% |
| !! | AGAAAAACAAAATGTTATAT+GGG | + | chr3.4:78305587-78305606 | None:intergenic | 15.0% |
| !! | TAGAAAAACAAAATGTTATA+TGG | + | chr3.4:78305588-78305607 | None:intergenic | 15.0% |
| !! | TATGATCATAGTTAATTAAT+GGG | - | chr3.4:78306217-78306236 | MS.gene71523:CDS | 15.0% |
| !!! | ATCAAAATAAATTTGTTAAC+CGG | - | chr3.4:78303275-78303294 | MS.gene71523:intron | 15.0% |
| !!! | CTTTGAAATATTAAAACAAT+AGG | - | chr3.4:78305345-78305364 | MS.gene71523:intron | 15.0% |
| !!! | TAACAAATTTATTTTGATCA+AGG | + | chr3.4:78303273-78303292 | None:intergenic | 15.0% |
| !!! | TATTTTCAATTAATCAATAC+AGG | + | chr3.4:78305520-78305539 | None:intergenic | 15.0% |
| !!! | TTTTAATTCATTTCTTTAAG+AGG | - | chr3.4:78304962-78304981 | MS.gene71523:intron | 15.0% |
| !!! | TTTTATTAGTAGAATAAAGT+TGG | - | chr3.4:78306476-78306495 | MS.gene71523:intron | 15.0% |
| !! | AAAACTAACCTATCTTATAT+GGG | + | chr3.4:78305553-78305572 | None:intergenic | 20.0% |
| !! | AATAAAATCATCAATTGTCA+TGG | + | chr3.4:78306463-78306482 | None:intergenic | 20.0% |
| !! | ATGAGATAAATTTATCTACA+CGG | - | chr3.4:78305117-78305136 | MS.gene71523:CDS | 20.0% |
| !! | CAAAATTAGGAATCATAAAA+AGG | + | chr3.4:78304222-78304241 | None:intergenic | 20.0% |
| !! | CCTCATTAGATTTAAAAAAT+GGG | - | chr3.4:78305678-78305697 | MS.gene71523:intron | 20.0% |
| !! | GTATGATCATAGTTAATTAA+TGG | - | chr3.4:78306216-78306235 | MS.gene71523:CDS | 20.0% |
| !! | TACATAACTACCAAATATAA+AGG | + | chr3.4:78302687-78302706 | None:intergenic | 20.0% |
| !! | TCCTCATTAGATTTAAAAAA+TGG | - | chr3.4:78305677-78305696 | MS.gene71523:intron | 20.0% |
| !! | TTCTTCTATTAAATTTATGC+AGG | - | chr3.4:78304291-78304310 | MS.gene71523:intron | 20.0% |
| !! | TTGTATACCAAAATATGATA+AGG | + | chr3.4:78304553-78304572 | None:intergenic | 20.0% |
| !!! | ATCATATTTTGGTATACAAA+AGG | - | chr3.4:78304554-78304573 | MS.gene71523:CDS | 20.0% |
| !!! | ATTTTGTTGTAAACAAATGA+AGG | + | chr3.4:78303349-78303368 | None:intergenic | 20.0% |
| !!! | CATATTTTTAAAGTCAGTAA+TGG | - | chr3.4:78303533-78303552 | MS.gene71523:intron | 20.0% |
| !!! | CATTACTGACTTTAAAAATA+TGG | + | chr3.4:78303535-78303554 | None:intergenic | 20.0% |
| !!! | TTATTTCTTATATTGTCTGT+AGG | - | chr3.4:78302765-78302784 | MS.gene71523:CDS | 20.0% |
| !!! | TTTATGATTCCTAATTTTGT+GGG | - | chr3.4:78304223-78304242 | MS.gene71523:intron | 20.0% |
| !!! | TTTTATGATTCCTAATTTTG+TGG | - | chr3.4:78304222-78304241 | MS.gene71523:intron | 20.0% |
| ! | AAAACAGAAAATTCCATTGA+TGG | - | chr3.4:78306365-78306384 | MS.gene71523:intron | 25.0% |
| ! | AAAGAAAAAGTTATTGTCTG+AGG | - | chr3.4:78303807-78303826 | MS.gene71523:intron | 25.0% |
| ! | AAATTGCGATAATGTTTCTT+CGG | + | chr3.4:78305084-78305103 | None:intergenic | 25.0% |
| ! | AACATATGTGTCTATTATTG+AGG | + | chr3.4:78303200-78303219 | None:intergenic | 25.0% |
| ! | ACCAACAAACTGAAAAAATA+TGG | - | chr3.4:78306285-78306304 | MS.gene71523:intron | 25.0% |
| ! | ACCAATATGATAATTGTGAT+GGG | + | chr3.4:78302914-78302933 | None:intergenic | 25.0% |
| ! | ATATGATAAGGACAATTCAT+TGG | + | chr3.4:78304541-78304560 | None:intergenic | 25.0% |
| ! | ATCTAATAGCTTAAGCTTTA+AGG | - | chr3.4:78305788-78305807 | MS.gene71523:intron | 25.0% |
| ! | ATTTATGTACCCACAAAATT+AGG | + | chr3.4:78304235-78304254 | None:intergenic | 25.0% |
| ! | CAAAAGTAAGAGATTTAAGA+CGG | + | chr3.4:78305841-78305860 | None:intergenic | 25.0% |
| ! | GAAAACTAACCTATCTTATA+TGG | + | chr3.4:78305554-78305573 | None:intergenic | 25.0% |
| ! | TACCAATATGATAATTGTGA+TGG | + | chr3.4:78302915-78302934 | None:intergenic | 25.0% |
| ! | TGAATTATGCTACATATACA+TGG | - | chr3.4:78302731-78302750 | MS.gene71523:CDS | 25.0% |
| ! | TTAAAATCAACCTGTTTAAG+TGG | + | chr3.4:78305965-78305984 | None:intergenic | 25.0% |
| ! | TTAAAGCTTAAGCTATTAGA+TGG | + | chr3.4:78305789-78305808 | None:intergenic | 25.0% |
| ! | TTCAAATCATTATCTGTCAA+AGG | + | chr3.4:78302639-78302658 | None:intergenic | 25.0% |
| ! | TTCTATTAAATTTATGCAGG+AGG | - | chr3.4:78304294-78304313 | MS.gene71523:intron | 25.0% |
| !! | ATTACACATTAAGGTATCAT+AGG | + | chr3.4:78304908-78304927 | None:intergenic | 25.0% |
| !! | GAATTGTCCTTATCATATTT+TGG | - | chr3.4:78304543-78304562 | MS.gene71523:CDS | 25.0% |
| !! | GACACATAATTGAAGATTTT+TGG | - | chr3.4:78304365-78304384 | MS.gene71523:intron | 25.0% |
| !! | TAAATGCAGAAACTTTGAAA+AGG | + | chr3.4:78304940-78304959 | None:intergenic | 25.0% |
| !!! | AAAACAATAGGTTTTTGAAG+TGG | - | chr3.4:78305357-78305376 | MS.gene71523:intron | 25.0% |
| !!! | CCCATTTTTTAAATCTAATG+AGG | + | chr3.4:78305681-78305700 | None:intergenic | 25.0% |
| !!! | TAAATCTCTTACTTTTGTCA+GGG | - | chr3.4:78305844-78305863 | MS.gene71523:intron | 25.0% |
| !!! | TCTTGATTTGTTTTCTTTAC+AGG | - | chr3.4:78304110-78304129 | MS.gene71523:CDS | 25.0% |
| !!! | TTAAATCTCTTACTTTTGTC+AGG | - | chr3.4:78305843-78305862 | MS.gene71523:intron | 25.0% |
| !!! | TTCAAAGAACTTTGAAGTTA+AGG | + | chr3.4:78305332-78305351 | None:intergenic | 25.0% |
| !!! | TTCTTATCCTTGTTTTGATA+TGG | - | chr3.4:78303489-78303508 | MS.gene71523:intron | 25.0% |
| AAAAAAGTTCACATAGAACG+TGG | - | chr3.4:78304388-78304407 | MS.gene71523:intron | 30.0% | |
| AAACTATTTGTGAACTTGTG+GGG | + | chr3.4:78303414-78303433 | None:intergenic | 30.0% | |
| AAAGATAGATGTCAAGATTG+AGG | - | chr3.4:78305262-78305281 | MS.gene71523:intron | 30.0% | |
| AATAGTTACTACATGCAGAA+TGG | + | chr3.4:78305922-78305941 | None:intergenic | 30.0% | |
| AATCATGCCATATCAAAACA+AGG | + | chr3.4:78303499-78303518 | None:intergenic | 30.0% | |
| ACCCATCACAATTATCATAT+TGG | - | chr3.4:78302910-78302929 | MS.gene71523:intron | 30.0% | |
| AGAACCAAAGAATTATTCCA+TGG | + | chr3.4:78303440-78303459 | None:intergenic | 30.0% | |
| ATGACTATTATACACATGCA+TGG | + | chr3.4:78303066-78303085 | None:intergenic | 30.0% | |
| CAAACTATTTGTGAACTTGT+GGG | + | chr3.4:78303415-78303434 | None:intergenic | 30.0% | |
| CACAAGTTCACAAATAGTTT+GGG | - | chr3.4:78303414-78303433 | MS.gene71523:intron | 30.0% | |
| CATGTGTATAATAGTCATTC+TGG | - | chr3.4:78303068-78303087 | MS.gene71523:CDS | 30.0% | |
| CTATGCAGTATTACACATTA+AGG | + | chr3.4:78304917-78304936 | None:intergenic | 30.0% | |
| GAAAACTGATAAGAGATAGA+AGG | + | chr3.4:78302939-78302958 | None:intergenic | 30.0% | |
| GAAGAAACATTATCGCAATT+TGG | - | chr3.4:78305083-78305102 | MS.gene71523:CDS | 30.0% | |
| GAGAGATAATCGTTATTGTA+TGG | - | chr3.4:78303095-78303114 | MS.gene71523:CDS | 30.0% | |
| GATGGTAAGTCCTTTATATT+TGG | - | chr3.4:78302674-78302693 | MS.gene71523:CDS | 30.0% | |
| GTTGAAGTTTAAAAGCTAGT+GGG | - | chr3.4:78302978-78302997 | MS.gene71523:intron | 30.0% | |
| GTTTATAGATATGAACTGTC+TGG | - | chr3.4:78304628-78304647 | MS.gene71523:CDS | 30.0% | |
| TCAATCTTGACATCTATCTT+TGG | + | chr3.4:78305263-78305282 | None:intergenic | 30.0% | |
| TCTAAATACTTGAGCTTAGT+TGG | + | chr3.4:78303616-78303635 | None:intergenic | 30.0% | |
| TGAAACTTCTTCTCTTACAA+GGG | + | chr3.4:78302814-78302833 | None:intergenic | 30.0% | |
| TGAAGCTCATAGAAGAATAT+TGG | - | chr3.4:78302839-78302858 | MS.gene71523:CDS | 30.0% | |
| TGTTGAAGTTTAAAAGCTAG+TGG | - | chr3.4:78302977-78302996 | MS.gene71523:intron | 30.0% | |
| TTAAATCTAATGAGGAAGCA+AGG | + | chr3.4:78305673-78305692 | None:intergenic | 30.0% | |
| TTGAAACTTCTTCTCTTACA+AGG | + | chr3.4:78302815-78302834 | None:intergenic | 30.0% | |
| ! | AAAGATGCTTTGGATGATAA+AGG | - | chr3.4:78305194-78305213 | MS.gene71523:CDS | 30.0% |
| ! | AATTCCTTTTCCACTTAAAC+AGG | - | chr3.4:78305952-78305971 | MS.gene71523:intron | 30.0% |
| ! | CAATGTTGTATGTCTGAAAT+TGG | - | chr3.4:78303700-78303719 | MS.gene71523:intron | 30.0% |
| ! | TTATGTTCCTTTTTCCTTGA+AGG | - | chr3.4:78303856-78303875 | MS.gene71523:CDS | 30.0% |
| ! | TTTTCTTTCAATGCAATGCA+AGG | + | chr3.4:78303795-78303814 | None:intergenic | 30.0% |
| !! | AAATCTCTTACTTTTGTCAG+GGG | - | chr3.4:78305845-78305864 | MS.gene71523:intron | 30.0% |
| !! | TGCACACATATTTTGTTTAG+AGG | - | chr3.4:78305019-78305038 | MS.gene71523:intron | 30.0% |
| !!! | GCCATATTTTTTCAGTTTGT+TGG | + | chr3.4:78306289-78306308 | None:intergenic | 30.0% |
| AAAAGAAACCAATGCTGCAA+AGG | - | chr3.4:78303989-78304008 | MS.gene71523:CDS | 35.0% | |
| AAACAGTTACCGTTAGATCT+AGG | - | chr3.4:78306418-78306437 | MS.gene71523:intron | 35.0% | |
| AAAGGATATATGGTACTGCA+TGG | - | chr3.4:78304007-78304026 | MS.gene71523:CDS | 35.0% | |
| AACACCAAAGAATCTTTCCA+AGG | + | chr3.4:78306074-78306093 | None:intergenic | 35.0% | |
| AACTTGCAGAACATATAGAC+AGG | + | chr3.4:78304149-78304168 | None:intergenic | 35.0% | |
| AAGCTTAAGCTATTAGATGG+AGG | + | chr3.4:78305786-78305805 | None:intergenic | 35.0% | |
| AAGGATATATGGTACTGCAT+GGG | - | chr3.4:78304008-78304027 | MS.gene71523:CDS | 35.0% | |
| AAGTTAAGGAATTGCCTGTA+TGG | + | chr3.4:78305318-78305337 | None:intergenic | 35.0% | |
| ACAAATCAAGATCTTGTCCT+AGG | + | chr3.4:78304101-78304120 | None:intergenic | 35.0% | |
| ACCAGATTAAAGATGAGATC+AGG | - | chr3.4:78305042-78305061 | MS.gene71523:CDS | 35.0% | |
| ACCTGATAGCTCTTCATTTA+AGG | - | chr3.4:78305400-78305419 | MS.gene71523:intron | 35.0% | |
| ACTGCTCTATGGATCATTAT+AGG | + | chr3.4:78306043-78306062 | None:intergenic | 35.0% | |
| AGAGAAAGGTAGAATATACC+AGG | + | chr3.4:78303241-78303260 | None:intergenic | 35.0% | |
| AGCAATAGACTCAAGTTCAA+CGG | + | chr3.4:78303947-78303966 | None:intergenic | 35.0% | |
| AGGATCTTGAACAAGTCATT+AGG | - | chr3.4:78305729-78305748 | MS.gene71523:intron | 35.0% | |
| ATAACTTCCACACTAGTTGA+AGG | + | chr3.4:78303581-78303600 | None:intergenic | 35.0% | |
| ATCTATCTTTGGCCCATAAA+AGG | + | chr3.4:78305252-78305271 | None:intergenic | 35.0% | |
| ATCTTGAACAAGTCATTAGG+GGG | - | chr3.4:78305732-78305751 | MS.gene71523:intron | 35.0% | |
| ATGCTTCAGCAGAATGAAAA+TGG | - | chr3.4:78303676-78303695 | MS.gene71523:intron | 35.0% | |
| ATTAAGCCCTTAATCTCGTT+TGG | + | chr3.4:78305650-78305669 | None:intergenic | 35.0% | |
| CAGATTAAAGATGAGATCAG+GGG | - | chr3.4:78305044-78305063 | MS.gene71523:CDS | 35.0% | |
| CCAAACTATTTGTGAACTTG+TGG | + | chr3.4:78303416-78303435 | None:intergenic | 35.0% | |
| CCACAAGTTCACAAATAGTT+TGG | - | chr3.4:78303413-78303432 | MS.gene71523:intron | 35.0% | |
| CCAGATTAAAGATGAGATCA+GGG | - | chr3.4:78305043-78305062 | MS.gene71523:CDS | 35.0% | |
| CTTGAATGAACCATACAAGA+TGG | - | chr3.4:78302862-78302881 | MS.gene71523:CDS | 35.0% | |
| GAAACTTCTTCTCTTACAAG+GGG | + | chr3.4:78302813-78302832 | None:intergenic | 35.0% | |
| GAAGAGAATCAAGAAAGAGA+TGG | - | chr3.4:78302656-78302675 | MS.gene71523:CDS | 35.0% | |
| GATCTTGAACAAGTCATTAG+GGG | - | chr3.4:78305731-78305750 | MS.gene71523:intron | 35.0% | |
| GGAAAAAGGAACATAAGTTG+AGG | + | chr3.4:78303852-78303871 | None:intergenic | 35.0% | |
| GGATAAGAAACAAAATGCAG+TGG | + | chr3.4:78303478-78303497 | None:intergenic | 35.0% | |
| GGATCTTGAACAAGTCATTA+GGG | - | chr3.4:78305730-78305749 | MS.gene71523:intron | 35.0% | |
| GGTAAAATTCGAGCTTGTAT+TGG | + | chr3.4:78306139-78306158 | None:intergenic | 35.0% | |
| GTTTAGCCAAACGAGATTAA+GGG | - | chr3.4:78305641-78305660 | MS.gene71523:intron | 35.0% | |
| TCAAAGAAGAAGCTAAACGT+CGG | - | chr3.4:78304064-78304083 | MS.gene71523:CDS | 35.0% | |
| TCAACCTGTTTAAGTGGAAA+AGG | + | chr3.4:78305959-78305978 | None:intergenic | 35.0% | |
| TCCAAAATCTCCATCTTGTA+TGG | + | chr3.4:78302875-78302894 | None:intergenic | 35.0% | |
| TCCTTAAATGAAGAGCTATC+AGG | + | chr3.4:78305404-78305423 | None:intergenic | 35.0% | |
| TCTATTGTATACACCACATG+TGG | - | chr3.4:78304417-78304436 | MS.gene71523:intron | 35.0% | |
| TCTGCATTTCTTATGAGCTT+TGG | + | chr3.4:78306345-78306364 | None:intergenic | 35.0% | |
| TGAAATTGGAACTGTGAAGA+TGG | - | chr3.4:78303714-78303733 | MS.gene71523:intron | 35.0% | |
| TGGACCTATCAAATTGATGA+CGG | - | chr3.4:78305218-78305237 | MS.gene71523:CDS | 35.0% | |
| TGTATTGGAGAAAGCCATAA+TGG | + | chr3.4:78306124-78306143 | None:intergenic | 35.0% | |
| TGTCGGAGAAGATGATATAT+GGG | - | chr3.4:78305151-78305170 | MS.gene71523:CDS | 35.0% | |
| TGTTTAGCCAAACGAGATTA+AGG | - | chr3.4:78305640-78305659 | MS.gene71523:intron | 35.0% | |
| TTGCGAAACCCATATAAGAT+AGG | - | chr3.4:78305542-78305561 | MS.gene71523:intron | 35.0% | |
| TTTCCAGTAGATTCAACATG+AGG | + | chr3.4:78303910-78303929 | None:intergenic | 35.0% | |
| ! | AAGCCATAATGGAAAATCAC+CGG | + | chr3.4:78306113-78306132 | None:intergenic | 35.0% |
| ! | AATTGGCTTCATGAGTACTT+AGG | + | chr3.4:78303381-78303400 | None:intergenic | 35.0% |
| ! | ACCATACAAGATGGAGATTT+TGG | - | chr3.4:78302871-78302890 | MS.gene71523:CDS | 35.0% |
| ! | CAAGGTACTTTGTTAGAGAA+AGG | + | chr3.4:78303255-78303274 | None:intergenic | 35.0% |
| ! | GCTTTTAAACTTCAACATGC+AGG | + | chr3.4:78302974-78302993 | None:intergenic | 35.0% |
| ! | GTAATGGGATCAACAATCAA+TGG | + | chr3.4:78304862-78304881 | None:intergenic | 35.0% |
| ! | GTTCTTATAGAGCATTATGC+CGG | - | chr3.4:78306091-78306110 | MS.gene71523:intron | 35.0% |
| ! | TACAAGATGGAGATTTTGGA+AGG | - | chr3.4:78302875-78302894 | MS.gene71523:intron | 35.0% |
| !! | AAGTCAGTAATGGTGTTATG+AGG | - | chr3.4:78303543-78303562 | MS.gene71523:intron | 35.0% |
| !! | ATAAGTTGGTTCTTTGGTAC+AGG | - | chr3.4:78304992-78305011 | MS.gene71523:intron | 35.0% |
| !! | ATGACTTGTTCAAGATCCTT+TGG | + | chr3.4:78305728-78305747 | None:intergenic | 35.0% |
| !! | ATGCTCATAAGTTGGTTCTT+TGG | - | chr3.4:78304986-78305005 | MS.gene71523:intron | 35.0% |
| !! | CTCAGCTTTAAAAGATGCTT+TGG | - | chr3.4:78305184-78305203 | MS.gene71523:CDS | 35.0% |
| !!! | CAAAGCATCTTTTAAAGCTG+AGG | + | chr3.4:78305186-78305205 | None:intergenic | 35.0% |
| AAACAAAATGCAGTGGAGCA+TGG | + | chr3.4:78303471-78303490 | None:intergenic | 40.0% | |
| AAATTTATGCAGGAGGATGC+TGG | - | chr3.4:78304301-78304320 | MS.gene71523:intron | 40.0% | |
| ATGATCACCTTCAACTAGTG+TGG | - | chr3.4:78303571-78303590 | MS.gene71523:intron | 40.0% | |
| ATGTGGCAAAAGCTGATCTT+TGG | - | chr3.4:78304434-78304453 | MS.gene71523:intron | 40.0% | |
| ATGTTTCTTCGGTAAGATCC+AGG | + | chr3.4:78305073-78305092 | None:intergenic | 40.0% | |
| CAAAGAAGAAGCTAAACGTC+GGG | - | chr3.4:78304065-78304084 | MS.gene71523:CDS | 40.0% | |
| CCAATGCTGCAAAGGATATA+TGG | - | chr3.4:78303997-78304016 | MS.gene71523:CDS | 40.0% | |
| CCATATATCCTTTGCAGCAT+TGG | + | chr3.4:78304000-78304019 | None:intergenic | 40.0% | |
| CCCTGATCTCATCTTTAATC+TGG | + | chr3.4:78305046-78305065 | None:intergenic | 40.0% | |
| CTACTAACTCTGTGGTTCTT+AGG | - | chr3.4:78303120-78303139 | MS.gene71523:CDS | 40.0% | |
| CTGTCGGAGAAGATGATATA+TGG | - | chr3.4:78305150-78305169 | MS.gene71523:CDS | 40.0% | |
| GAACTGTCTGGAAGTTTACA+CGG | - | chr3.4:78304640-78304659 | MS.gene71523:CDS | 40.0% | |
| GCTATGGAGGGAAAAGAAAT+GGG | - | chr3.4:78303006-78303025 | MS.gene71523:CDS | 40.0% | |
| GGATCCTTGGAAAGATTCTT+TGG | - | chr3.4:78306067-78306086 | MS.gene71523:intron | 40.0% | |
| GTATGGATCTACTAACTCTG+TGG | - | chr3.4:78303112-78303131 | MS.gene71523:CDS | 40.0% | |
| GTTACCGTTAGATCTAGGTT+TGG | - | chr3.4:78306423-78306442 | MS.gene71523:intron | 40.0% | |
| GTTGAACTTGAGTCTATTGC+TGG | - | chr3.4:78303946-78303965 | MS.gene71523:CDS | 40.0% | |
| TATGTGATGTCAAAACGCTG+TGG | + | chr3.4:78305992-78306011 | None:intergenic | 40.0% | |
| TCAAGATTGAGGATGCTCTT+GGG | - | chr3.4:78305273-78305292 | MS.gene71523:intron | 40.0% | |
| TCTTGAACAAGTCATTAGGG+GGG | - | chr3.4:78305733-78305752 | MS.gene71523:intron | 40.0% | |
| TGGGCCATGGAATAATTCTT+TGG | - | chr3.4:78303433-78303452 | MS.gene71523:intron | 40.0% | |
| TGGTCATTTGGACTTCTACA+AGG | - | chr3.4:78304465-78304484 | MS.gene71523:CDS | 40.0% | |
| TTCACAAATAGTTTGGGCCA+TGG | - | chr3.4:78303420-78303439 | MS.gene71523:intron | 40.0% | |
| TTCTGCTGAAGCATGTCAAT+TGG | + | chr3.4:78303670-78303689 | None:intergenic | 40.0% | |
| TTGGAAGATCAGTGGTCATT+TGG | - | chr3.4:78304453-78304472 | MS.gene71523:intron | 40.0% | |
| ! | ATGCCGGTGATTTTCCATTA+TGG | - | chr3.4:78306107-78306126 | MS.gene71523:intron | 40.0% |
| ! | ATGCTTTGGATGATAAAGGC+TGG | - | chr3.4:78305198-78305217 | MS.gene71523:CDS | 40.0% |
| ! | ATTCCATTGATGGCTGTTGT+AGG | - | chr3.4:78306375-78306394 | MS.gene71523:intron | 40.0% |
| ! | CAATTAGCTTGAATACTGCG+AGG | - | chr3.4:78306257-78306276 | MS.gene71523:CDS | 40.0% |
| ! | CTATCGGGATTTTCCTGTTA+GGG | - | chr3.4:78304588-78304607 | MS.gene71523:CDS | 40.0% |
| ! | GGACCTATCAAATTGATGAC+GGG | - | chr3.4:78305219-78305238 | MS.gene71523:CDS | 40.0% |
| ! | GTTTAAAAGCTAGTGGGTGA+AGG | - | chr3.4:78302984-78303003 | MS.gene71523:CDS | 40.0% |
| ! | TAAGAGGCATGCTCATAAGT+TGG | - | chr3.4:78304978-78304997 | MS.gene71523:intron | 40.0% |
| ! | TCATGCAACCTTACTAGTCT+TGG | + | chr3.4:78304823-78304842 | None:intergenic | 40.0% |
| ! | TCTTCTCCGACAGATTTTTC+AGG | + | chr3.4:78305143-78305162 | None:intergenic | 40.0% |
| ! | TGTTCCTTTTTCCTTGAAGG+CGG | - | chr3.4:78303859-78303878 | MS.gene71523:CDS | 40.0% |
| !! | AAAGGAAGCGTCATTCCTAT+CGG | - | chr3.4:78304572-78304591 | MS.gene71523:CDS | 40.0% |
| !! | ACCTATCAAATTGATGACGG+GGG | - | chr3.4:78305221-78305240 | MS.gene71523:CDS | 40.0% |
| !! | GACCTATCAAATTGATGACG+GGG | - | chr3.4:78305220-78305239 | MS.gene71523:CDS | 40.0% |
| !! | TTAGTTTTCTGGCACCCAAA+GGG | - | chr3.4:78304331-78304350 | MS.gene71523:intron | 40.0% |
| !!! | GGAGATTTTGGAAGGCATTA+AGG | - | chr3.4:78302883-78302902 | MS.gene71523:intron | 40.0% |
| !!! | TTTAGTTTTCTGGCACCCAA+AGG | - | chr3.4:78304330-78304349 | MS.gene71523:intron | 40.0% |
| AAAATATGGCATCCGAGCTG+AGG | - | chr3.4:78306299-78306318 | MS.gene71523:intron | 45.0% | |
| AAGCTAAACGTCGGGATCAT+AGG | - | chr3.4:78304073-78304092 | MS.gene71523:CDS | 45.0% | |
| ACACGGCCTGAAAAATCTGT+CGG | - | chr3.4:78305134-78305153 | MS.gene71523:CDS | 45.0% | |
| ACCGTTAGATCTAGGTTTGG+TGG | - | chr3.4:78306426-78306445 | MS.gene71523:intron | 45.0% | |
| AGTCTATTGCTGGTGCTTAC+TGG | - | chr3.4:78303956-78303975 | MS.gene71523:CDS | 45.0% | |
| ATGATCCATAGAGCAGTGCT+TGG | - | chr3.4:78306046-78306065 | MS.gene71523:intron | 45.0% | |
| CAAGTAGTCGAACGTTACCT+GGG | + | chr3.4:78306173-78306192 | None:intergenic | 45.0% | |
| CCCACCAAACCTAGATCTAA+CGG | + | chr3.4:78306430-78306449 | None:intergenic | 45.0% | |
| CCTAACAGGAAAATCCCGAT+AGG | + | chr3.4:78304590-78304609 | None:intergenic | 45.0% | |
| CCTAATTCTGCTACCCTAAC+AGG | + | chr3.4:78304604-78304623 | None:intergenic | 45.0% | |
| CCTGTTAGGGTAGCAGAATT+AGG | - | chr3.4:78304601-78304620 | MS.gene71523:CDS | 45.0% | |
| CTGGGATTGCTCTTGGATAA+AGG | - | chr3.4:78303315-78303334 | MS.gene71523:intron | 45.0% | |
| CTTGAAGCAGGAAGATGCAA+AGG | + | chr3.4:78305704-78305723 | None:intergenic | 45.0% | |
| CTTTGCATCTTCCTGCTTCA+AGG | - | chr3.4:78305702-78305721 | MS.gene71523:intron | 45.0% | |
| GGACCTCATGTTGAATCTAC+TGG | - | chr3.4:78303904-78303923 | MS.gene71523:CDS | 45.0% | |
| GGCTATGGAGGGAAAAGAAA+TGG | - | chr3.4:78303005-78303024 | MS.gene71523:CDS | 45.0% | |
| GTCAAGATTGAGGATGCTCT+TGG | - | chr3.4:78305272-78305291 | MS.gene71523:intron | 45.0% | |
| TCAAGTAGTCGAACGTTACC+TGG | + | chr3.4:78306174-78306193 | None:intergenic | 45.0% | |
| TCCCCCGTCATCAATTTGAT+AGG | + | chr3.4:78305225-78305244 | None:intergenic | 45.0% | |
| TGAAACCTCTAACGCGGAAA+AGG | + | chr3.4:78304666-78304685 | None:intergenic | 45.0% | |
| TGAGCTTGCCAAGACTAGTA+AGG | - | chr3.4:78304812-78304831 | MS.gene71523:CDS | 45.0% | |
| TTGCATGACATGACTGTCCT+GGG | - | chr3.4:78304835-78304854 | MS.gene71523:intron | 45.0% | |
| TTGTGAACTTGTGGGGATGA+TGG | + | chr3.4:78303407-78303426 | None:intergenic | 45.0% | |
| TTTACCTGTTACTGATGCCC+AGG | - | chr3.4:78306153-78306172 | MS.gene71523:intron | 45.0% | |
| ! | AGATCAGCTTTTGCCACATG+TGG | + | chr3.4:78304433-78304452 | None:intergenic | 45.0% |
| ! | CCGTTAGATCTAGGTTTGGT+GGG | - | chr3.4:78306427-78306446 | MS.gene71523:intron | 45.0% |
| ! | CCTATCGGGATTTTCCTGTT+AGG | - | chr3.4:78304587-78304606 | MS.gene71523:CDS | 45.0% |
| ! | GCTGATCTTTGGAAGATCAG+TGG | - | chr3.4:78304445-78304464 | MS.gene71523:intron | 45.0% |
| ! | GTTCCTTTTTCCTTGAAGGC+GGG | - | chr3.4:78303860-78303879 | MS.gene71523:CDS | 45.0% |
| ! | TGTGGGGATGATGGTGAAAT+TGG | + | chr3.4:78303398-78303417 | None:intergenic | 45.0% |
| ! | TTCCTTTTTCCTTGAAGGCG+GGG | - | chr3.4:78303861-78303880 | MS.gene71523:CDS | 45.0% |
| !! | AAGGAAGCGTCATTCCTATC+GGG | - | chr3.4:78304573-78304592 | MS.gene71523:CDS | 45.0% |
| !! | ATCATGTGCAGCTTGTTACC+TGG | - | chr3.4:78303220-78303239 | MS.gene71523:intron | 45.0% |
| !! | CGTTAGATCTAGGTTTGGTG+GGG | - | chr3.4:78306428-78306447 | MS.gene71523:intron | 45.0% |
| !! | CTTACTTTTGTCAGGGGTTG+TGG | - | chr3.4:78305851-78305870 | MS.gene71523:intron | 45.0% |
| !! | TATCAAATTGATGACGGGGG+AGG | - | chr3.4:78305224-78305243 | MS.gene71523:CDS | 45.0% |
| AGCAAGGACTTAGAGAGGAC+CGG | + | chr3.4:78303297-78303316 | None:intergenic | 50.0% | |
| AGGATGCTCTTGGGAGAAAG+TGG | - | chr3.4:78305282-78305301 | MS.gene71523:intron | 50.0% | |
| ATCCAAGAGCAATCCCAGCA+AGG | + | chr3.4:78303313-78303332 | None:intergenic | 50.0% | |
| ATCCCAGCAAGGACTTAGAG+AGG | + | chr3.4:78303302-78303321 | None:intergenic | 50.0% | |
| ATCCGAGCTGAGGTTTGTCA+TGG | - | chr3.4:78306309-78306328 | MS.gene71523:intron | 50.0% | |
| ATTGCTGGTGCTTACTGGAG+AGG | - | chr3.4:78303961-78303980 | MS.gene71523:CDS | 50.0% | |
| CAACATGAGGTCCAGCACAT+AGG | + | chr3.4:78303897-78303916 | None:intergenic | 50.0% | |
| CCTGTGTGAAACCTCTAACG+CGG | + | chr3.4:78304672-78304691 | None:intergenic | 50.0% | |
| CTCCATGACAAACCTCAGCT+CGG | + | chr3.4:78306314-78306333 | None:intergenic | 50.0% | |
| CTGAGGTTTGTCATGGAGAG+CGG | - | chr3.4:78306316-78306335 | MS.gene71523:intron | 50.0% | |
| GATCAACAATCAATGGCCCC+AGG | + | chr3.4:78304855-78304874 | None:intergenic | 50.0% | |
| GATGGCTGTTGTAGGTGCAA+AGG | - | chr3.4:78306383-78306402 | MS.gene71523:intron | 50.0% | |
| GCACCTACAACAGCCATCAA+TGG | + | chr3.4:78306381-78306400 | None:intergenic | 50.0% | |
| GTCCTCTCTAAGTCCTTGCT+GGG | - | chr3.4:78303297-78303316 | MS.gene71523:intron | 50.0% | |
| GTCTCACGATAGCACCCTTT+GGG | + | chr3.4:78304348-78304367 | None:intergenic | 50.0% | |
| GTGGCAGTGTTCAACCATAC+AGG | - | chr3.4:78305301-78305320 | MS.gene71523:intron | 50.0% | |
| GTTACCTGGGCATCAGTAAC+AGG | + | chr3.4:78306160-78306179 | None:intergenic | 50.0% | |
| GTTGCATGACATGACTGTCC+TGG | - | chr3.4:78304834-78304853 | MS.gene71523:intron | 50.0% | |
| TAGAGCAGTGCTTGGATCCT+TGG | - | chr3.4:78306054-78306073 | MS.gene71523:intron | 50.0% | |
| TCTTCCTGCTTCAAGGCCAA+AGG | - | chr3.4:78305709-78305728 | MS.gene71523:intron | 50.0% | |
| TGCATGACATGACTGTCCTG+GGG | - | chr3.4:78304836-78304855 | MS.gene71523:intron | 50.0% | |
| TGTCTCACGATAGCACCCTT+TGG | + | chr3.4:78304349-78304368 | None:intergenic | 50.0% | |
| TTATGCAGGAGGATGCTGGT+GGG | - | chr3.4:78304305-78304324 | MS.gene71523:intron | 50.0% | |
| TTTATGCAGGAGGATGCTGG+TGG | - | chr3.4:78304304-78304323 | MS.gene71523:intron | 50.0% | |
| ! | AAGCTAGTGGGTGAAGGCTA+TGG | - | chr3.4:78302990-78303009 | MS.gene71523:CDS | 50.0% |
| ! | AGGATCCAAGCACTGCTCTA+TGG | + | chr3.4:78306054-78306073 | None:intergenic | 50.0% |
| ! | TAGTGGGTGAAGGCTATGGA+GGG | - | chr3.4:78302994-78303013 | MS.gene71523:CDS | 50.0% |
| !! | AGATCCTTTGGCCTTGAAGC+AGG | + | chr3.4:78305716-78305735 | None:intergenic | 50.0% |
| !!! | CTGGTGGGGGTTTAGTTTTC+TGG | - | chr3.4:78304320-78304339 | MS.gene71523:intron | 50.0% |
| CCGCGTTAGAGGTTTCACAC+AGG | - | chr3.4:78304669-78304688 | MS.gene71523:CDS | 55.0% | |
| CTCCCCGCCTTCAAGGAAAA+AGG | + | chr3.4:78303866-78303885 | None:intergenic | 55.0% | |
| GGTCCTCTCTAAGTCCTTGC+TGG | - | chr3.4:78303296-78303315 | MS.gene71523:intron | 55.0% | |
| GTCCTTGCTGGGATTGCTCT+TGG | - | chr3.4:78303308-78303327 | MS.gene71523:intron | 55.0% | |
| TATGCAGGAGGATGCTGGTG+GGG | - | chr3.4:78304306-78304325 | MS.gene71523:intron | 55.0% | |
| ! | CTAGTGGGTGAAGGCTATGG+AGG | - | chr3.4:78302993-78303012 | MS.gene71523:CDS | 55.0% |
| ! | TTTTCCTTGAAGGCGGGGAG+TGG | - | chr3.4:78303866-78303885 | MS.gene71523:CDS | 55.0% |
| !! | AGATGAGATCAGGGGTGTCC+TGG | - | chr3.4:78305052-78305071 | MS.gene71523:CDS | 55.0% |
| !! | TCTAGGTTTGGTGGGGAGCT+TGG | - | chr3.4:78306435-78306454 | MS.gene71523:intron | 55.0% |
| !!! | ACGGGGGAGGTGCCTTTTAT+GGG | - | chr3.4:78305237-78305256 | MS.gene71523:CDS | 55.0% |
| ATGCAGGAGGATGCTGGTGG+GGG | - | chr3.4:78304307-78304326 | MS.gene71523:intron | 60.0% | |
| ! | CACGGCCTTTTCCGCGTTAG+AGG | - | chr3.4:78304658-78304677 | MS.gene71523:CDS | 60.0% |
| ! | GAGTGGTGGGACCTATGTGC+TGG | - | chr3.4:78303883-78303902 | MS.gene71523:CDS | 60.0% |
| !!! | GACGGGGGAGGTGCCTTTTA+TGG | - | chr3.4:78305236-78305255 | MS.gene71523:CDS | 60.0% |
| CCTTGAAGGCGGGGAGTGGT+GGG | - | chr3.4:78303870-78303889 | MS.gene71523:CDS | 65.0% | |
| CGTCGGGATCATAGGCGCCT+AGG | - | chr3.4:78304081-78304100 | MS.gene71523:CDS | 65.0% | |
| TCCTTGAAGGCGGGGAGTGG+TGG | - | chr3.4:78303869-78303888 | MS.gene71523:CDS | 65.0% | |
| CCCACCACTCCCCGCCTTCA+AGG | + | chr3.4:78303873-78303892 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 78302630 | 78306524 | 78302630 | ID=MS.gene71523 |
| chr3.4 | mRNA | 78302630 | 78306524 | 78302630 | ID=MS.gene71523.t1;Parent=MS.gene71523 |
| chr3.4 | exon | 78306477 | 78306524 | 78306477 | ID=MS.gene71523.t1.exon1;Parent=MS.gene71523.t1 |
| chr3.4 | CDS | 78306477 | 78306524 | 78306477 | ID=cds.MS.gene71523.t1;Parent=MS.gene71523.t1 |
| chr3.4 | exon | 78306192 | 78306300 | 78306192 | ID=MS.gene71523.t1.exon2;Parent=MS.gene71523.t1 |
| chr3.4 | CDS | 78306192 | 78306300 | 78306192 | ID=cds.MS.gene71523.t1;Parent=MS.gene71523.t1 |
| chr3.4 | exon | 78305023 | 78305276 | 78305023 | ID=MS.gene71523.t1.exon3;Parent=MS.gene71523.t1 |
| chr3.4 | CDS | 78305023 | 78305276 | 78305023 | ID=cds.MS.gene71523.t1;Parent=MS.gene71523.t1 |
| chr3.4 | exon | 78304464 | 78304841 | 78304464 | ID=MS.gene71523.t1.exon4;Parent=MS.gene71523.t1 |
| chr3.4 | CDS | 78304464 | 78304841 | 78304464 | ID=cds.MS.gene71523.t1;Parent=MS.gene71523.t1 |
| chr3.4 | exon | 78303832 | 78304140 | 78303832 | ID=MS.gene71523.t1.exon5;Parent=MS.gene71523.t1 |
| chr3.4 | CDS | 78303832 | 78304140 | 78303832 | ID=cds.MS.gene71523.t1;Parent=MS.gene71523.t1 |
| chr3.4 | exon | 78302980 | 78303180 | 78302980 | ID=MS.gene71523.t1.exon6;Parent=MS.gene71523.t1 |
| chr3.4 | CDS | 78302980 | 78303180 | 78302980 | ID=cds.MS.gene71523.t1;Parent=MS.gene71523.t1 |
| chr3.4 | exon | 78302630 | 78302890 | 78302630 | ID=MS.gene71523.t1.exon7;Parent=MS.gene71523.t1 |
| chr3.4 | CDS | 78302630 | 78302890 | 78302630 | ID=cds.MS.gene71523.t1;Parent=MS.gene71523.t1 |
| Gene Sequence |
| Protein sequence |
