Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71815.t1 | XP_003592634.1 | 85.4 | 239 | 29 | 1 | 1 | 233 | 1 | 239 | 6.30E-111 | 410.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71815.t1 | G7IC98 | 85.4 | 239 | 29 | 1 | 1 | 233 | 1 | 239 | 4.6e-111 | 410.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene71815 | 0.839696 | 1.36E-57 | -1.69E-46 |
| MS.gene049983 | MS.gene71815 | 0.81556 | 8.68E-52 | -1.69E-46 |
| MS.gene04998 | MS.gene71815 | 0.804345 | 2.26E-49 | -1.69E-46 |
| MS.gene050359 | MS.gene71815 | 0.849695 | 2.74E-60 | -1.69E-46 |
| MS.gene050414 | MS.gene71815 | 0.832338 | 1.00E-55 | -1.69E-46 |
| MS.gene050646 | MS.gene71815 | 0.815454 | 9.17E-52 | -1.69E-46 |
| MS.gene050654 | MS.gene71815 | 0.827906 | 1.21E-54 | -1.69E-46 |
| MS.gene050752 | MS.gene71815 | 0.805065 | 1.60E-49 | -1.69E-46 |
| MS.gene050931 | MS.gene71815 | 0.806815 | 6.85E-50 | -1.69E-46 |
| MS.gene050945 | MS.gene71815 | 0.83675 | 7.79E-57 | -1.69E-46 |
| MS.gene051003 | MS.gene71815 | 0.821871 | 3.21E-53 | -1.69E-46 |
| MS.gene051043 | MS.gene71815 | 0.847328 | 1.24E-59 | -1.69E-46 |
| MS.gene051234 | MS.gene71815 | 0.843364 | 1.47E-58 | -1.69E-46 |
| MS.gene051343 | MS.gene71815 | 0.827917 | 1.20E-54 | -1.69E-46 |
| MS.gene051699 | MS.gene71815 | 0.832676 | 8.25E-56 | -1.69E-46 |
| MS.gene052072 | MS.gene71815 | 0.806047 | 9.95E-50 | -1.69E-46 |
| MS.gene052242 | MS.gene71815 | -0.803146 | 4.01E-49 | -1.69E-46 |
| MS.gene052296 | MS.gene71815 | 0.808051 | 3.75E-50 | -1.69E-46 |
| MS.gene052335 | MS.gene71815 | 0.806823 | 6.82E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene71815 | 0.800418 | 1.45E-48 | -1.69E-46 |
| MS.gene053058 | MS.gene71815 | 0.826079 | 3.30E-54 | -1.69E-46 |
| MS.gene053143 | MS.gene71815 | 0.818682 | 1.73E-52 | -1.69E-46 |
| MS.gene053879 | MS.gene71815 | 0.821769 | 3.39E-53 | -1.69E-46 |
| MS.gene054004 | MS.gene71815 | 0.803566 | 3.28E-49 | -1.69E-46 |
| MS.gene054178 | MS.gene71815 | 0.826288 | 2.94E-54 | -1.69E-46 |
| MS.gene054403 | MS.gene71815 | 0.80588 | 1.08E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene71815 | 0.815178 | 1.06E-51 | -1.69E-46 |
| MS.gene054893 | MS.gene71815 | 0.824608 | 7.36E-54 | -1.69E-46 |
| MS.gene055513 | MS.gene71815 | 0.807151 | 5.81E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene71815 | 0.804674 | 1.93E-49 | -1.69E-46 |
| MS.gene057622 | MS.gene71815 | 0.80602 | 1.01E-49 | -1.69E-46 |
| MS.gene058095 | MS.gene71815 | 0.817826 | 2.70E-52 | -1.69E-46 |
| MS.gene059007 | MS.gene71815 | 0.833135 | 6.35E-56 | -1.69E-46 |
| MS.gene059146 | MS.gene71815 | 0.821872 | 3.20E-53 | -1.69E-46 |
| MS.gene05952 | MS.gene71815 | 0.800834 | 1.20E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene71815 | -0.80319 | 3.92E-49 | -1.69E-46 |
| MS.gene060259 | MS.gene71815 | 0.810786 | 9.69E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene71815 | 0.819192 | 1.32E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene71815 | 0.808504 | 3.00E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene71815 | 0.856444 | 3.20E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71815.t1 | MTR_1g110370 | 90.795 | 239 | 16 | 1 | 1 | 233 | 1 | 239 | 5.35e-156 | 432 |
| MS.gene71815.t1 | MTR_1g110360 | 62.000 | 250 | 67 | 9 | 1 | 232 | 1 | 240 | 1.75e-85 | 254 |
| MS.gene71815.t1 | MTR_6g008660 | 60.236 | 254 | 68 | 10 | 1 | 232 | 1 | 243 | 2.61e-83 | 249 |
| MS.gene71815.t1 | MTR_5g083820 | 62.948 | 251 | 61 | 10 | 1 | 229 | 1 | 241 | 9.67e-80 | 241 |
| MS.gene71815.t1 | MTR_6g083920 | 35.968 | 253 | 94 | 10 | 20 | 228 | 2 | 230 | 8.20e-32 | 116 |
| MS.gene71815.t1 | MTR_5g056040 | 33.898 | 236 | 118 | 8 | 25 | 232 | 25 | 250 | 7.60e-27 | 104 |
| MS.gene71815.t1 | MTR_4g086830 | 49.057 | 106 | 32 | 2 | 1 | 106 | 1 | 84 | 9.41e-21 | 87.0 |
| MS.gene71815.t1 | MTR_4g100570 | 30.612 | 245 | 107 | 9 | 26 | 224 | 11 | 238 | 8.50e-19 | 82.4 |
| MS.gene71815.t1 | MTR_5g056110 | 35.404 | 161 | 71 | 7 | 77 | 224 | 73 | 213 | 1.91e-16 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71815.t1 | AT1G25370 | 32.971 | 276 | 120 | 9 | 1 | 224 | 1 | 263 | 1.41e-26 | 103 |
| MS.gene71815.t1 | AT1G25370 | 32.971 | 276 | 120 | 9 | 1 | 224 | 1 | 263 | 1.41e-26 | 103 |
| MS.gene71815.t1 | AT1G68340 | 32.000 | 250 | 116 | 10 | 17 | 224 | 2 | 239 | 8.21e-23 | 93.2 |
| MS.gene71815.t1 | AT1G68340 | 32.000 | 250 | 116 | 10 | 17 | 224 | 2 | 239 | 8.30e-23 | 93.2 |
| MS.gene71815.t1 | AT3G18295 | 37.963 | 216 | 103 | 8 | 28 | 226 | 13 | 214 | 2.06e-22 | 91.7 |
| MS.gene71815.t1 | AT1G68340 | 32.000 | 225 | 105 | 9 | 17 | 205 | 2 | 214 | 6.61e-19 | 82.8 |
| MS.gene71815.t1 | AT3G60410 | 38.806 | 134 | 61 | 5 | 110 | 222 | 187 | 320 | 1.41e-14 | 72.0 |
| MS.gene71815.t1 | AT3G60410 | 38.806 | 134 | 61 | 5 | 110 | 222 | 187 | 320 | 1.41e-14 | 72.0 |
| MS.gene71815.t1 | AT3G60410 | 38.806 | 134 | 61 | 5 | 110 | 222 | 187 | 320 | 1.41e-14 | 72.0 |
| MS.gene71815.t1 | AT1G48770 | 31.343 | 201 | 95 | 7 | 28 | 220 | 11 | 176 | 3.16e-12 | 63.5 |
| MS.gene71815.t1 | AT1G48770 | 31.343 | 201 | 95 | 7 | 28 | 220 | 11 | 176 | 3.16e-12 | 63.5 |
| MS.gene71815.t1 | AT1G48770 | 31.343 | 201 | 95 | 7 | 28 | 220 | 11 | 176 | 3.16e-12 | 63.5 |
Find 62 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGCTTCTGAACATTTCT+AGG | 0.189823 | 1.3:-75101815 | None:intergenic |
| AGAAGAGAGTGGTGCTGTTA+TGG | 0.254438 | 1.3:+75101232 | MS.gene71815:CDS |
| CCCACTTCAAATAAGGAAAA+TGG | 0.259092 | 1.3:-75101304 | None:intergenic |
| CTCTCGGTTTGTCGCCGTTA+AGG | 0.320855 | 1.3:+75101648 | MS.gene71815:CDS |
| GAAGAGAGTGGTGCTGTTAT+GGG | 0.326106 | 1.3:+75101233 | MS.gene71815:CDS |
| AACATCATCAGGAACCTTAT+AGG | 0.333378 | 1.3:-75101967 | None:intergenic |
| GATTAATGCTGATTCCTATA+AGG | 0.358878 | 1.3:+75101953 | MS.gene71815:CDS |
| AGGGTCGTCGGCGGCTGCGG+CGG | 0.358935 | 1.3:+75101544 | MS.gene71815:CDS |
| AGAAGGGTCGTCGGCGGCTG+CGG | 0.377657 | 1.3:+75101541 | MS.gene71815:CDS |
| AAAGAGAATGGTGGTGGAGA+AGG | 0.384258 | 1.3:+75101524 | MS.gene71815:CDS |
| CTTCAATCTTTCACCTTCAC+CGG | 0.392665 | 1.3:-75101264 | None:intergenic |
| GTAAACTTCACCTTCTTCTC+AGG | 0.414913 | 1.3:-75101710 | None:intergenic |
| CCGCCGTTACCATTCCTTAA+CGG | 0.425360 | 1.3:-75101662 | None:intergenic |
| GGGTCGTCGGCGGCTGCGGC+GGG | 0.434545 | 1.3:+75101545 | MS.gene71815:CDS |
| AAGAGAATGGTGGTGGAGAA+GGG | 0.452542 | 1.3:+75101525 | MS.gene71815:CDS |
| TTGAAGAAGGAGAAAGAGAA+TGG | 0.453989 | 1.3:+75101512 | MS.gene71815:CDS |
| CACACCTTGCCGTTATTCTC+AGG | 0.454028 | 1.3:-75101990 | None:intergenic |
| TGGTGTCACCGCCGGAGAAT+AGG | 0.459611 | 1.3:+75101384 | MS.gene71815:CDS |
| TACTTTGTCATTGATGAAGA+AGG | 0.461580 | 1.3:+75101730 | MS.gene71815:CDS |
| GCTGTTATGGGTAATGGTTC+CGG | 0.467366 | 1.3:+75101245 | MS.gene71815:CDS |
| AAGGAGAAAGAGAATGGTGG+TGG | 0.478905 | 1.3:+75101518 | MS.gene71815:CDS |
| GAAGATTTCATCACGATGAC+TGG | 0.482101 | 1.3:+75101761 | MS.gene71815:CDS |
| TTATTCTCAGGAACATCATC+AGG | 0.482796 | 1.3:-75101978 | None:intergenic |
| AGAATCGATGGTGGTGATGA+TGG | 0.483584 | 1.3:+75101419 | MS.gene71815:CDS |
| GGCGGCTGCGGCGGGAGAGA+AGG | 0.491775 | 1.3:+75101553 | MS.gene71815:CDS |
| ATCTCAGACAACCACATACC+AGG | 0.508509 | 1.3:-75101933 | None:intergenic |
| AAGGTTGATGTTTGATCTGA+AGG | 0.512312 | 1.3:+75101460 | MS.gene71815:CDS |
| AACGGCGGTGGTAAGTTAAG+AGG | 0.518465 | 1.3:+75101677 | MS.gene71815:CDS |
| AGTGGTGCTGTTATGGGTAA+TGG | 0.525672 | 1.3:+75101239 | MS.gene71815:CDS |
| AGGTGTGGAATTTGAGAACA+AGG | 0.527843 | 1.3:+75101573 | MS.gene71815:CDS |
| GGTTTGTCGCCGTTAAGGAA+TGG | 0.536117 | 1.3:+75101653 | MS.gene71815:CDS |
| TGTCAGAAGAATCCTGAAAA+CGG | 0.554244 | 1.3:+75101347 | MS.gene71815:CDS |
| GATGATGTTCCTGAGAATAA+CGG | 0.555714 | 1.3:+75101981 | MS.gene71815:CDS |
| TTCGTCGATGGTGTCACCGC+CGG | 0.556041 | 1.3:+75101376 | MS.gene71815:CDS |
| CTGGTCAAAAGCCTCATAGA+AGG | 0.556564 | 1.3:+75101780 | MS.gene71815:CDS |
| ATGGGTAATGGTTCCGGTGA+AGG | 0.563977 | 1.3:+75101251 | MS.gene71815:CDS |
| TGGTGGTTGTCCTGAGAAGA+AGG | 0.564497 | 1.3:+75101700 | MS.gene71815:CDS |
| AGTCTGTTCATCCTATTCTC+CGG | 0.565451 | 1.3:-75101395 | None:intergenic |
| TGGTGGTGGAGAAGGGTCGT+CGG | 0.571110 | 1.3:+75101532 | MS.gene71815:CDS |
| TTAAGGAATGGTAACGGCGG+TGG | 0.572770 | 1.3:+75101665 | MS.gene71815:CDS |
| CTGCGGCGGGAGAGAAGGTG+TGG | 0.573569 | 1.3:+75101558 | MS.gene71815:CDS |
| GGTGGTAAGTTAAGAGGTGG+TGG | 0.580505 | 1.3:+75101683 | MS.gene71815:CDS |
| GGATCGATGCTATGCGTGAA+AGG | 0.580862 | 1.3:+75101441 | MS.gene71815:CDS |
| TTTCAGGATTCTTCTGACAC+CGG | 0.588036 | 1.3:-75101343 | None:intergenic |
| TTTGATCTGAAGGTTGAAGC+TGG | 0.588078 | 1.3:+75101470 | MS.gene71815:CDS |
| ATGAACAGACTGAGAATCGA+TGG | 0.604081 | 1.3:+75101407 | MS.gene71815:CDS |
| TGGAATTTGAGAACAAGGAG+AGG | 0.605032 | 1.3:+75101578 | MS.gene71815:CDS |
| AAACGGTGACGATTCGTCGA+TGG | 0.609877 | 1.3:+75101364 | MS.gene71815:CDS |
| TGGTGGAGAAGGGTCGTCGG+CGG | 0.613413 | 1.3:+75101535 | MS.gene71815:CDS |
| TCTCAGACAACCACATACCA+GGG | 0.619276 | 1.3:-75101932 | None:intergenic |
| GAATCGATGGTGGTGATGAT+GGG | 0.621168 | 1.3:+75101420 | MS.gene71815:CDS |
| GGAAAATGGAAGTTGTGAAG+AGG | 0.631370 | 1.3:-75101290 | None:intergenic |
| TCGCCGTTAAGGAATGGTAA+CGG | 0.633228 | 1.3:+75101659 | MS.gene71815:CDS |
| AAGAAGGAGAAAGAGAATGG+TGG | 0.634822 | 1.3:+75101515 | MS.gene71815:CDS |
| GGCGGTGGTAAGTTAAGAGG+TGG | 0.646062 | 1.3:+75101680 | MS.gene71815:CDS |
| CTGTTCATCCTATTCTCCGG+CGG | 0.656983 | 1.3:-75101392 | None:intergenic |
| TCTGGTGAAGAAGAAGAGAG+TGG | 0.667630 | 1.3:+75101221 | MS.gene71815:CDS |
| CTTAACGGCGACAAACCGAG+AGG | 0.678447 | 1.3:-75101647 | None:intergenic |
| TGTTCCTGAGAATAACGGCA+AGG | 0.698747 | 1.3:+75101986 | MS.gene71815:CDS |
| ATCTGAAGGTTGAAGCTGGT+AGG | 0.709950 | 1.3:+75101474 | MS.gene71815:CDS |
| AACAGACTGAGAATCGATGG+TGG | 0.737234 | 1.3:+75101410 | MS.gene71815:CDS |
| CCGTTAAGGAATGGTAACGG+CGG | 0.752215 | 1.3:+75101662 | MS.gene71815:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAATGAAATTAAAAATT+AGG | - | chr1.3:75101870-75101889 | None:intergenic | 10.0% |
| ATTGATGAGAAAAAACCTCT+CGG | + | chr1.3:75101632-75101651 | MS.gene71815:CDS | 30.0% | |
| ATTTGCTTCTGAACATTTCT+AGG | - | chr1.3:75101818-75101837 | None:intergenic | 30.0% | |
| GCTAAATTAAGTGTTCTGAT+TGG | + | chr1.3:75102062-75102081 | MS.gene71815:intron | 30.0% | |
| TACTTTGTCATTGATGAAGA+AGG | + | chr1.3:75101730-75101749 | MS.gene71815:CDS | 30.0% | |
| TAGAAATGTTCAGAAGCAAA+TGG | + | chr1.3:75101817-75101836 | MS.gene71815:intron | 30.0% | |
| !! | AACATTTCTAGGTCTCTTTT+TGG | - | chr1.3:75101807-75101826 | None:intergenic | 30.0% |
| !! | ACATTTCTAGGTCTCTTTTT+GGG | - | chr1.3:75101806-75101825 | None:intergenic | 30.0% |
| !! | ATTTTCCTTATTTGAAGTGG+GGG | + | chr1.3:75101306-75101325 | MS.gene71815:CDS | 30.0% |
| !! | CATTTTCCTTATTTGAAGTG+GGG | + | chr1.3:75101305-75101324 | MS.gene71815:CDS | 30.0% |
| !! | CCATTTTCCTTATTTGAAGT+GGG | + | chr1.3:75101304-75101323 | MS.gene71815:CDS | 30.0% |
| !! | GATTAATGCTGATTCCTATA+AGG | + | chr1.3:75101953-75101972 | MS.gene71815:CDS | 30.0% |
| !! | TCCATTTTCCTTATTTGAAG+TGG | + | chr1.3:75101303-75101322 | MS.gene71815:CDS | 30.0% |
| AACATCATCAGGAACCTTAT+AGG | - | chr1.3:75101970-75101989 | None:intergenic | 35.0% | |
| CCCACTTCAAATAAGGAAAA+TGG | - | chr1.3:75101307-75101326 | None:intergenic | 35.0% | |
| GATGATGTTCCTGAGAATAA+CGG | + | chr1.3:75101981-75102000 | MS.gene71815:CDS | 35.0% | |
| TGTCAGAAGAATCCTGAAAA+CGG | + | chr1.3:75101347-75101366 | MS.gene71815:CDS | 35.0% | |
| TTATTCTCAGGAACATCATC+AGG | - | chr1.3:75101981-75102000 | None:intergenic | 35.0% | |
| TTGAAGAAGGAGAAAGAGAA+TGG | + | chr1.3:75101512-75101531 | MS.gene71815:CDS | 35.0% | |
| !! | AAGGTTGATGTTTGATCTGA+AGG | + | chr1.3:75101460-75101479 | MS.gene71815:CDS | 35.0% |
| !! | GAAAGATGCGATTTTGAAGA+AGG | + | chr1.3:75101499-75101518 | MS.gene71815:CDS | 35.0% |
| !! | TGTTCTGATTGGTTTGAACT+TGG | + | chr1.3:75102073-75102092 | MS.gene71815:intron | 35.0% |
| !! | TTTGAACTTGGTTTTTGCAG+AGG | + | chr1.3:75102085-75102104 | MS.gene71815:intron | 35.0% |
| !! | TTTTCTGGAGAGAATGGAAA+GGG | + | chr1.3:75101602-75101621 | MS.gene71815:CDS | 35.0% |
| !! | TTTTTCTGGAGAGAATGGAA+AGG | + | chr1.3:75101601-75101620 | MS.gene71815:CDS | 35.0% |
| AAGAAGGAGAAAGAGAATGG+TGG | + | chr1.3:75101515-75101534 | MS.gene71815:CDS | 40.0% | |
| AGGTGTGGAATTTGAGAACA+AGG | + | chr1.3:75101573-75101592 | MS.gene71815:CDS | 40.0% | |
| AGTCTGTTCATCCTATTCTC+CGG | - | chr1.3:75101398-75101417 | None:intergenic | 40.0% | |
| ATGAACAGACTGAGAATCGA+TGG | + | chr1.3:75101407-75101426 | MS.gene71815:CDS | 40.0% | |
| CTTCAATCTTTCACCTTCAC+CGG | - | chr1.3:75101267-75101286 | None:intergenic | 40.0% | |
| GAAGATTTCATCACGATGAC+TGG | + | chr1.3:75101761-75101780 | MS.gene71815:CDS | 40.0% | |
| GGAAAATGGAAGTTGTGAAG+AGG | - | chr1.3:75101293-75101312 | None:intergenic | 40.0% | |
| GTAAACTTCACCTTCTTCTC+AGG | - | chr1.3:75101713-75101732 | None:intergenic | 40.0% | |
| TGATTCCCCCACTTCAAATA+AGG | - | chr1.3:75101314-75101333 | None:intergenic | 40.0% | |
| TGGAATTTGAGAACAAGGAG+AGG | + | chr1.3:75101578-75101597 | MS.gene71815:CDS | 40.0% | |
| TTTCAGGATTCTTCTGACAC+CGG | - | chr1.3:75101346-75101365 | None:intergenic | 40.0% | |
| TTTGATCTGAAGGTTGAAGC+TGG | + | chr1.3:75101470-75101489 | MS.gene71815:CDS | 40.0% | |
| ! | AGAACAAGGAGAGGTTTTTC+TGG | + | chr1.3:75101587-75101606 | MS.gene71815:CDS | 40.0% |
| !! | AGAGGTTTTTCTGGAGAGAA+TGG | + | chr1.3:75101596-75101615 | MS.gene71815:CDS | 40.0% |
| AACAGACTGAGAATCGATGG+TGG | + | chr1.3:75101410-75101429 | MS.gene71815:CDS | 45.0% | |
| AAGGAGAAAGAGAATGGTGG+TGG | + | chr1.3:75101518-75101537 | MS.gene71815:CDS | 45.0% | |
| ATCTCAGACAACCACATACC+AGG | - | chr1.3:75101936-75101955 | None:intergenic | 45.0% | |
| ATCTGAAGGTTGAAGCTGGT+AGG | + | chr1.3:75101474-75101493 | MS.gene71815:CDS | 45.0% | |
| CTGGTCAAAAGCCTCATAGA+AGG | + | chr1.3:75101780-75101799 | MS.gene71815:CDS | 45.0% | |
| TCGCCGTTAAGGAATGGTAA+CGG | + | chr1.3:75101659-75101678 | MS.gene71815:CDS | 45.0% | |
| TCTCAGACAACCACATACCA+GGG | - | chr1.3:75101935-75101954 | None:intergenic | 45.0% | |
| TCTGGTGAAGAAGAAGAGAG+TGG | + | chr1.3:75101221-75101240 | MS.gene71815:CDS | 45.0% | |
| TGTTCCTGAGAATAACGGCA+AGG | + | chr1.3:75101986-75102005 | MS.gene71815:CDS | 45.0% | |
| ! | AGAATCGATGGTGGTGATGA+TGG | + | chr1.3:75101419-75101438 | MS.gene71815:CDS | 45.0% |
| ! | AGACACTTTTCCCTGGTATG+TGG | + | chr1.3:75101922-75101941 | MS.gene71815:intron | 45.0% |
| ! | GAATCGATGGTGGTGATGAT+GGG | + | chr1.3:75101420-75101439 | MS.gene71815:CDS | 45.0% |
| ! | GCTGTTATGGGTAATGGTTC+CGG | + | chr1.3:75101245-75101264 | MS.gene71815:CDS | 45.0% |
| ! | TTTGTGCAGACACTTTTCCC+TGG | + | chr1.3:75101915-75101934 | MS.gene71815:intron | 45.0% |
| !! | AAAGAGAATGGTGGTGGAGA+AGG | + | chr1.3:75101524-75101543 | MS.gene71815:CDS | 45.0% |
| !! | AAGAGAATGGTGGTGGAGAA+GGG | + | chr1.3:75101525-75101544 | MS.gene71815:CDS | 45.0% |
| !! | AGAAGAGAGTGGTGCTGTTA+TGG | + | chr1.3:75101232-75101251 | MS.gene71815:CDS | 45.0% |
| !! | AGTGGTGCTGTTATGGGTAA+TGG | + | chr1.3:75101239-75101258 | MS.gene71815:CDS | 45.0% |
| !! | CTCTTTTTGGGCCTTCTATG+AGG | - | chr1.3:75101794-75101813 | None:intergenic | 45.0% |
| !! | GAAGAGAGTGGTGCTGTTAT+GGG | + | chr1.3:75101233-75101252 | MS.gene71815:CDS | 45.0% |
| AAACGGTGACGATTCGTCGA+TGG | + | chr1.3:75101364-75101383 | MS.gene71815:CDS | 50.0% | |
| AACGGCGGTGGTAAGTTAAG+AGG | + | chr1.3:75101677-75101696 | MS.gene71815:CDS | 50.0% | |
| CACACCTTGCCGTTATTCTC+AGG | - | chr1.3:75101993-75102012 | None:intergenic | 50.0% | |
| CCGCCGTTACCATTCCTTAA+CGG | - | chr1.3:75101665-75101684 | None:intergenic | 50.0% | |
| CTGTTCATCCTATTCTCCGG+CGG | - | chr1.3:75101395-75101414 | None:intergenic | 50.0% | |
| GGATCGATGCTATGCGTGAA+AGG | + | chr1.3:75101441-75101460 | MS.gene71815:CDS | 50.0% | |
| GGTGGTAAGTTAAGAGGTGG+TGG | + | chr1.3:75101683-75101702 | MS.gene71815:CDS | 50.0% | |
| GGTTTGTCGCCGTTAAGGAA+TGG | + | chr1.3:75101653-75101672 | MS.gene71815:CDS | 50.0% | |
| TGGTGGTTGTCCTGAGAAGA+AGG | + | chr1.3:75101700-75101719 | MS.gene71815:CDS | 50.0% | |
| ! | ATGGGTAATGGTTCCGGTGA+AGG | + | chr1.3:75101251-75101270 | MS.gene71815:CDS | 50.0% |
| ! | GACGAATCGTCACCGTTTTC+AGG | - | chr1.3:75101362-75101381 | None:intergenic | 50.0% |
| !! | CCGTTAAGGAATGGTAACGG+CGG | + | chr1.3:75101662-75101681 | MS.gene71815:CDS | 50.0% |
| !! | TTAAGGAATGGTAACGGCGG+TGG | + | chr1.3:75101665-75101684 | MS.gene71815:CDS | 50.0% |
| CTTAACGGCGACAAACCGAG+AGG | - | chr1.3:75101650-75101669 | None:intergenic | 55.0% | |
| GGCGGTGGTAAGTTAAGAGG+TGG | + | chr1.3:75101680-75101699 | MS.gene71815:CDS | 55.0% | |
| ! | CTCTCGGTTTGTCGCCGTTA+AGG | + | chr1.3:75101648-75101667 | MS.gene71815:CDS | 55.0% |
| GGGGGAATCAGCGTTCTCTC+CGG | + | chr1.3:75101324-75101343 | MS.gene71815:CDS | 60.0% | |
| !! | TGGTGGTGGAGAAGGGTCGT+CGG | + | chr1.3:75101532-75101551 | MS.gene71815:CDS | 60.0% |
| !! | TGGTGTCACCGCCGGAGAAT+AGG | + | chr1.3:75101384-75101403 | MS.gene71815:CDS | 60.0% |
| !! | TTCGTCGATGGTGTCACCGC+CGG | + | chr1.3:75101376-75101395 | MS.gene71815:CDS | 60.0% |
| TGGTGGAGAAGGGTCGTCGG+CGG | + | chr1.3:75101535-75101554 | MS.gene71815:CDS | 65.0% | |
| AGAAGGGTCGTCGGCGGCTG+CGG | + | chr1.3:75101541-75101560 | MS.gene71815:CDS | 70.0% | |
| CTGCGGCGGGAGAGAAGGTG+TGG | + | chr1.3:75101558-75101577 | MS.gene71815:CDS | 70.0% | |
| ! | AGGGTCGTCGGCGGCTGCGG+CGG | + | chr1.3:75101544-75101563 | MS.gene71815:CDS | 80.0% |
| ! | GGCGGCTGCGGCGGGAGAGA+AGG | + | chr1.3:75101553-75101572 | MS.gene71815:CDS | 80.0% |
| ! | GGGTCGTCGGCGGCTGCGGC+GGG | + | chr1.3:75101545-75101564 | MS.gene71815:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 75101212 | 75102110 | 75101212 | ID=MS.gene71815 |
| chr1.3 | mRNA | 75101212 | 75102110 | 75101212 | ID=MS.gene71815.t1;Parent=MS.gene71815 |
| chr1.3 | exon | 75101212 | 75101823 | 75101212 | ID=MS.gene71815.t1.exon1;Parent=MS.gene71815.t1 |
| chr1.3 | CDS | 75101212 | 75101823 | 75101212 | ID=cds.MS.gene71815.t1;Parent=MS.gene71815.t1 |
| chr1.3 | exon | 75101924 | 75102007 | 75101924 | ID=MS.gene71815.t1.exon2;Parent=MS.gene71815.t1 |
| chr1.3 | CDS | 75101924 | 75102007 | 75101924 | ID=cds.MS.gene71815.t1;Parent=MS.gene71815.t1 |
| chr1.3 | exon | 75102105 | 75102110 | 75102105 | ID=MS.gene71815.t1.exon3;Parent=MS.gene71815.t1 |
| chr1.3 | CDS | 75102105 | 75102110 | 75102105 | ID=cds.MS.gene71815.t1;Parent=MS.gene71815.t1 |
| Gene Sequence |
| Protein sequence |
