AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73446


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73446.t1 MTR_1g109080 95.129 349 11 1 1 349 1 343 0.0 659
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73446.t1 AT2G01110 70.625 320 75 3 30 349 40 340 5.04e-151 429

Find 86 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTCGTGGTGCAGGTTTC+TGG 0.175531 1.4:-83537823 MS.gene73446:intron
CTTCTAGCAGCACCATTATT+AGG 0.229476 1.4:-83536653 MS.gene73446:CDS
AGGAGTTGGAGGAAGCATTT+TGG 0.229964 1.4:-83538492 MS.gene73446:CDS
AGAATCTTTATATCAGTTCT+AGG 0.249354 1.4:-83538512 MS.gene73446:CDS
ACCGATTATACAACTTCTAT+TGG 0.263487 1.4:-83536792 MS.gene73446:CDS
TGACCCGATTATGAGCTAAA+TGG 0.282917 1.4:+83539495 None:intergenic
CGAAGAAGTAATAAGAGTTT+TGG 0.297387 1.4:-83539440 MS.gene73446:CDS
CAGTACAGGCTTGTCTTTCC+AGG 0.298487 1.4:-83537539 MS.gene73446:intron
CGTTAGACCTGGAATTATAA+AGG 0.303877 1.4:+83537750 None:intergenic
GGACAACTTGGATTGGTTAC+TGG 0.310168 1.4:-83536770 MS.gene73446:CDS
TCAATACTTTGAGTTTGTTC+TGG 0.314656 1.4:-83537572 MS.gene73446:CDS
ATGAATATCCTTCCTCAGTT+CGG 0.317891 1.4:-83539530 MS.gene73446:CDS
TGGATATTGTGGCCTTCTCT+TGG 0.323792 1.4:-83537803 MS.gene73446:CDS
ATCATAGCCTTTATAATTCC+AGG 0.326206 1.4:-83537757 MS.gene73446:CDS
GCATGGATGGTCAAACTTGC+TGG 0.332429 1.4:-83536614 MS.gene73446:CDS
CTTACTGGGTCTTTCTTCAA+TGG 0.334299 1.4:+83539334 None:intergenic
CGGAATAACCTTCTCCTACT+TGG 0.346691 1.4:-83537668 MS.gene73446:CDS
AACCTTCTCCTACTTGGTTC+TGG 0.358897 1.4:-83537662 MS.gene73446:CDS
TGAATATCCTTCCTCAGTTC+GGG 0.363168 1.4:-83539529 MS.gene73446:CDS
AATCGGGTCAACAACTCTTC+CGG 0.366696 1.4:-83539482 MS.gene73446:CDS
GAACCCATTTAGCTCATAAT+CGG 0.370721 1.4:-83539499 MS.gene73446:CDS
TTTATATCAGTTCTAGGAGT+TGG 0.372808 1.4:-83538506 MS.gene73446:CDS
AACTCGTACTAAGCTGTTGT+TGG 0.379029 1.4:+83539375 None:intergenic
TTCTTTGTCGAAGCTCTTCA+AGG 0.382875 1.4:+83538531 None:intergenic
ATCGGGTCAACAACTCTTCC+GGG 0.383529 1.4:-83539481 MS.gene73446:CDS
CAAGTAGGAGAAGGTTATTC+CGG 0.387764 1.4:+83537669 None:intergenic
TCAGGAAGAAGCTCTTTATC+AGG 0.389696 1.4:+83538581 None:intergenic
CCCAATAGAAGTTGTATAAT+CGG 0.391969 1.4:+83536791 None:intergenic
CCGATTATACAACTTCTATT+GGG 0.394706 1.4:-83536791 MS.gene73446:CDS
GGATATTGTGGCCTTCTCTT+GGG 0.412223 1.4:-83537802 MS.gene73446:CDS
CAACTTCTATTGGGACAACT+TGG 0.415318 1.4:-83536782 MS.gene73446:CDS
ATGATTTCATAGAGAATGAT+AGG 0.415949 1.4:+83537775 None:intergenic
ACATAAACGCCGTATGGGAT+TGG 0.416626 1.4:-83539570 None:intergenic
ATGCTCATTTCTTTATCATC+AGG 0.420227 1.4:+83538563 None:intergenic
AAAGATATGCTTGATGGTAT+AGG 0.428767 1.4:-83538668 MS.gene73446:intron
CTGGTTCTTATGTTCAGTAC+AGG 0.435069 1.4:-83537553 MS.gene73446:CDS
GACAATAAAGATATGCTTGA+TGG 0.441520 1.4:-83538674 MS.gene73446:intron
GACCCGATTATGAGCTAAAT+GGG 0.443412 1.4:+83539496 None:intergenic
CATAAACGCCGTATGGGATT+GGG 0.445231 1.4:-83539569 None:intergenic
GTCTTTACCTAGGTGGTGCA+TGG 0.454573 1.4:-83536631 MS.gene73446:CDS
AGATTTCTTCAGCTAGCTCC+TGG 0.459845 1.4:-83538404 MS.gene73446:CDS
GAGACCGGATGCTATCAGTT+TGG 0.466801 1.4:-83536748 MS.gene73446:CDS
CCTAGGTAAAGACCTAATAA+TGG 0.468369 1.4:+83536641 None:intergenic
CTGACACCCTCTGATTGAAC+AGG 0.476792 1.4:+83538425 None:intergenic
ACTGATGAGCCTAAAACAAT+TGG 0.477239 1.4:+83537703 None:intergenic
AACTGAGGAAGGATATTCAT+AGG 0.479717 1.4:+83539533 None:intergenic
TTCTTTGTCAATTATGCTGA+AGG 0.481146 1.4:-83537622 MS.gene73446:CDS
TTACCTAGGTGGTGCATGGA+TGG 0.481523 1.4:-83536627 MS.gene73446:CDS
CTTTCAGCTTTCGTTAGACC+TGG 0.483102 1.4:+83537739 None:intergenic
TCTATTGGGACAACTTGGAT+TGG 0.484052 1.4:-83536777 MS.gene73446:CDS
ACAAAGAAATTTAATGCTGC+GGG 0.490001 1.4:+83537637 None:intergenic
ATATCAGTTCTAGGAGTTGG+AGG 0.501945 1.4:-83538503 MS.gene73446:CDS
GATTATGAGCTAAATGGGTT+CGG 0.514586 1.4:+83539501 None:intergenic
AAACTCAAAGTATTGATCAA+TGG 0.524905 1.4:+83537579 None:intergenic
AACCCATTTAGCTCATAATC+GGG 0.525966 1.4:-83539498 MS.gene73446:CDS
GACAAAGAAATTTAATGCTG+CGG 0.531903 1.4:+83537636 None:intergenic
AGAGAGAGGGAAGCTGAACC+CGG 0.534179 1.4:+83539463 None:intergenic
ACCTCCAAACTGATAGCATC+CGG 0.541278 1.4:+83536744 None:intergenic
TTGGATTGGTTACTGGAGAC+CGG 0.547880 1.4:-83536763 MS.gene73446:CDS
TGGTATAGGTGAAGAAACAT+TGG 0.554885 1.4:-83538654 MS.gene73446:CDS
GTCTAACGAAAGCTGAAAGA+AGG 0.555459 1.4:-83537735 MS.gene73446:CDS
CGTAGTAGTCGGAGCAGTAG+TGG 0.558016 1.4:-83536720 MS.gene73446:CDS
TTATTACTTCTTCGAGAGAG+AGG 0.560020 1.4:+83539449 None:intergenic
TGAAGCTCCTGTTCAATCAG+AGG 0.565387 1.4:-83538432 MS.gene73446:CDS
TATTACTTCTTCGAGAGAGA+GGG 0.570542 1.4:+83539450 None:intergenic
AGTACGAGTTCAACTAGACT+TGG 0.576801 1.4:-83539362 MS.gene73446:CDS
ACTGGGTCTTTCTTCAATGG+CGG 0.583374 1.4:+83539337 None:intergenic
ACCGGATGCTATCAGTTTGG+AGG 0.588400 1.4:-83536745 MS.gene73446:CDS
GCTAGAAGAACTTGAGTGAG+AGG 0.588816 1.4:+83536668 None:intergenic
GTGCAGGTTTCTGGATATTG+TGG 0.589310 1.4:-83537814 MS.gene73446:intron
TGATAGGACTTCCCAAGAGA+AGG 0.590331 1.4:+83537791 None:intergenic
CATGGATGGTCAAACTTGCT+GGG 0.591514 1.4:-83536613 MS.gene73446:CDS
GGAGCAACCCGAACTGAGGA+AGG 0.591542 1.4:+83539522 None:intergenic
CCATTATTAGGTCTTTACCT+AGG 0.610016 1.4:-83536641 MS.gene73446:CDS
GAAGCTCCTGTTCAATCAGA+GGG 0.614527 1.4:-83538431 MS.gene73446:CDS
GTTTGGAGGTACGTAGTAGT+CGG 0.615457 1.4:-83536731 MS.gene73446:CDS
TTATTAGGTCTTTACCTAGG+TGG 0.622151 1.4:-83536638 MS.gene73446:CDS
AACTTGAGTGAGAGGATCTG+TGG 0.626725 1.4:+83536676 None:intergenic
TACCAGAACCAAGTAGGAGA+AGG 0.629321 1.4:+83537660 None:intergenic
TGACCATCCATGCACCACCT+AGG 0.640535 1.4:+83536624 None:intergenic
TGCGGGTACCAGAACCAAGT+AGG 0.676319 1.4:+83537654 None:intergenic
AAGGATATTCATAGGAACAG+TGG 0.679790 1.4:+83539541 None:intergenic
GTTCGGAGCAACCCGAACTG+AGG 0.682822 1.4:+83539518 None:intergenic
TGAGTGAGAGGATCTGTGGA+TGG 0.685947 1.4:+83536680 None:intergenic
GATATTCATAGGAACAGTGG+CGG 0.714235 1.4:+83539544 None:intergenic
AAGGTGCTGTTGAATCACTG+TGG 0.719291 1.4:-83537603 MS.gene73446:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTAGTTTGTTTTTATT+GGG - chr1.4:83538009-83538028 MS.gene73446:intron 10.0%
!!! TGTATTTTATATTTATCATT+GGG + chr1.4:83538750-83538769 None:intergenic 10.0%
!!! TTGTATTTTATATTTATCAT+TGG + chr1.4:83538751-83538770 None:intergenic 10.0%
!!! TTTTAGTTACTATATATTAT+AGG + chr1.4:83539091-83539110 None:intergenic 10.0%
!! ATTATTTGAACTTATATTCT+TGG + chr1.4:83537381-83537400 None:intergenic 15.0%
!! CAATAAAAACAAACTAATTA+TGG + chr1.4:83538010-83538029 None:intergenic 15.0%
!! CTTGTTAAATTAAGAAAAAT+GGG + chr1.4:83536857-83536876 None:intergenic 15.0%
!! TTACATTCATAATTAATCAT+TGG - chr1.4:83538145-83538164 MS.gene73446:intron 15.0%
!!! ACTTGTTAAATTAAGAAAAA+TGG + chr1.4:83536858-83536877 None:intergenic 15.0%
!!! CATAATTAGTTTGTTTTTAT+TGG - chr1.4:83538008-83538027 MS.gene73446:intron 15.0%
!!! TAAAAATTTTACCTTTAAAG+TGG + chr1.4:83537800-83537819 None:intergenic 15.0%
!!! TAATTAGTTTGTTTTTATTG+GGG - chr1.4:83538010-83538029 MS.gene73446:intron 15.0%
!! TACCATATATTCAAAAAGAA+AGG + chr1.4:83538677-83538696 None:intergenic 20.0%
!! TAGTAACTAAAAAAAAGACT+TGG - chr1.4:83539099-83539118 MS.gene73446:intron 20.0%
!!! AAATTTGACTTCTCTAAAAT+AGG + chr1.4:83538214-83538233 None:intergenic 20.0%
!!! AGAAACATTGGAAAATTTTA+AGG - chr1.4:83537522-83537541 MS.gene73446:intron 20.0%
!!! ATTTTAGAGAAGTCAAATTT+AGG - chr1.4:83538214-83538233 MS.gene73446:intron 20.0%
!!! ATTTTTACTCAAAATATCTC+CGG - chr1.4:83537813-83537832 MS.gene73446:intron 20.0%
!!! GAATGTAATATTTTATTTCC+TGG - chr1.4:83537872-83537891 MS.gene73446:intron 20.0%
!!! TTCCTTTCTTTTTGAATATA+TGG - chr1.4:83538672-83538691 MS.gene73446:intron 20.0%
! AAACTAATTATGGCAGAAAA+TGG + chr1.4:83538000-83538019 None:intergenic 25.0%
! AGAATCTTTATATCAGTTCT+AGG - chr1.4:83537652-83537671 MS.gene73446:CDS 25.0%
! AGTTTGATCATGATTTAGAT+GGG + chr1.4:83538310-83538329 None:intergenic 25.0%
! ATGATTTCATAGAGAATGAT+AGG + chr1.4:83538392-83538411 None:intergenic 25.0%
! CAAATAATTCATTGATGAGA+CGG - chr1.4:83536972-83536991 MS.gene73446:intron 25.0%
! GTAATGGTTATATCATACAA+AGG + chr1.4:83538276-83538295 None:intergenic 25.0%
! TAGTTTGATCATGATTTAGA+TGG + chr1.4:83538311-83538330 None:intergenic 25.0%
! TATATTTATCATTGGGTCAA+TGG + chr1.4:83538743-83538762 None:intergenic 25.0%
! TCAAATAAGCTAATTCGAAT+GGG - chr1.4:83537288-83537307 MS.gene73446:intron 25.0%
! TGATCAAACTAATATTGTTG+TGG - chr1.4:83538320-83538339 MS.gene73446:intron 25.0%
! TGTAAACCTTGAAAATAAGT+TGG - chr1.4:83537189-83537208 MS.gene73446:intron 25.0%
! TTACAAGATAGTTTATGAAG+AGG + chr1.4:83537174-83537193 None:intergenic 25.0%
!! ATTTTTCTTCACCACTTTAA+AGG - chr1.4:83537786-83537805 MS.gene73446:CDS 25.0%
!! CTTTGCATTTTCAAAAGATT+TGG - chr1.4:83537699-83537718 MS.gene73446:CDS 25.0%
!! TTTTTACTCAAAATATCTCC+GGG - chr1.4:83537814-83537833 MS.gene73446:intron 25.0%
!!! AAACTCAAAGTATTGATCAA+TGG + chr1.4:83538588-83538607 None:intergenic 25.0%
!!! AAGATGCTTGAAAGTTTTAA+AGG - chr1.4:83539010-83539029 MS.gene73446:intron 25.0%
!!! TTGGAAAATTTTAAGGAAGA+TGG - chr1.4:83537529-83537548 MS.gene73446:intron 25.0%
!!! TTGTTTCCAACTTATTTTCA+AGG + chr1.4:83537198-83537217 None:intergenic 25.0%
!!! TTTTAGTTTTTTGCCTTCAT+AGG - chr1.4:83536877-83536896 MS.gene73446:intron 25.0%
AATGTTTGTAATCGATCATC+TGG - chr1.4:83538938-83538957 MS.gene73446:intron 30.0%
ACAAAGAAATTTAATGCTGC+GGG + chr1.4:83538530-83538549 None:intergenic 30.0%
ACAACTTACAGATAAGGATA+TGG - chr1.4:83537214-83537233 MS.gene73446:intron 30.0%
ACCGATTATACAACTTCTAT+TGG - chr1.4:83539372-83539391 MS.gene73446:CDS 30.0%
ATATTACTTGATATGAGACG+TGG + chr1.4:83538990-83539009 None:intergenic 30.0%
ATCATAGCCTTTATAATTCC+AGG - chr1.4:83538407-83538426 MS.gene73446:CDS 30.0%
ATGCTCATTTCTTTATCATC+AGG + chr1.4:83537604-83537623 None:intergenic 30.0%
CCCAATAGAAGTTGTATAAT+CGG + chr1.4:83539376-83539395 None:intergenic 30.0%
CCGATTATACAACTTCTATT+GGG - chr1.4:83539373-83539392 MS.gene73446:CDS 30.0%
CGTCTCATCAATGAATTATT+TGG + chr1.4:83536974-83536993 None:intergenic 30.0%
CTAAGTCATCTTGTATTTGT+AGG - chr1.4:83539348-83539367 MS.gene73446:CDS 30.0%
CTCAAATAAGCTAATTCGAA+TGG - chr1.4:83537287-83537306 MS.gene73446:intron 30.0%
GACAAAGAAATTTAATGCTG+CGG + chr1.4:83538531-83538550 None:intergenic 30.0%
GACAATAAAGATATGCTTGA+TGG - chr1.4:83537490-83537509 MS.gene73446:intron 30.0%
GATAAGCTGCTTAATTAAGT+TGG - chr1.4:83536909-83536928 MS.gene73446:intron 30.0%
GCATTTCATGTGAAGTTTAA+AGG - chr1.4:83537898-83537917 MS.gene73446:intron 30.0%
GGTTATATCATACAAAGGTT+GGG + chr1.4:83538271-83538290 None:intergenic 30.0%
TAAGAAAAATGGGTCTTACT+GGG + chr1.4:83536847-83536866 None:intergenic 30.0%
TAGAGAAGTCAAATTTAGGA+GGG - chr1.4:83538218-83538237 MS.gene73446:intron 30.0%
TATTACATTCACAACTCACT+AGG + chr1.4:83537862-83537881 None:intergenic 30.0%
TATTACTTGATATGAGACGT+GGG + chr1.4:83538989-83539008 None:intergenic 30.0%
TCATTAACTAAGAGTCTGTT+TGG + chr1.4:83537410-83537429 None:intergenic 30.0%
TCTTGAGAGATTATGGAAAT+AGG - chr1.4:83537031-83537050 MS.gene73446:intron 30.0%
TGGTTATATCATACAAAGGT+TGG + chr1.4:83538272-83538291 None:intergenic 30.0%
TTAAGAAAAATGGGTCTTAC+TGG + chr1.4:83536848-83536867 None:intergenic 30.0%
TTAGAGAAGTCAAATTTAGG+AGG - chr1.4:83538217-83538236 MS.gene73446:intron 30.0%
TTCTTTGTCAATTATGCTGA+AGG - chr1.4:83538542-83538561 MS.gene73446:CDS 30.0%
TTGGAAACAACTTACAGATA+AGG - chr1.4:83537208-83537227 MS.gene73446:intron 30.0%
TTTATCACTGTTGAACAATG+TGG - chr1.4:83539055-83539074 MS.gene73446:intron 30.0%
TTTATTCGAATTCCTAACAG+AGG + chr1.4:83538865-83538884 None:intergenic 30.0%
! AAAGAAAGGAAGTACAAAAC+AGG + chr1.4:83538663-83538682 None:intergenic 30.0%
! AAAGATATGCTTGATGGTAT+AGG - chr1.4:83537496-83537515 MS.gene73446:intron 30.0%
! AAAGCTGAAAGAAGGTTTTT+AGG - chr1.4:83538437-83538456 MS.gene73446:CDS 30.0%
! AAGCTGAAAGAAGGTTTTTA+GGG - chr1.4:83538438-83538457 MS.gene73446:CDS 30.0%
! AATTCCTAACAGAGGTATAT+TGG + chr1.4:83538857-83538876 None:intergenic 30.0%
! AGCTTATTTGAGTTATGTAC+TGG + chr1.4:83537279-83537298 None:intergenic 30.0%
! ATTCCTAACAGAGGTATATT+GGG + chr1.4:83538856-83538875 None:intergenic 30.0%
! CGAAGAAGTAATAAGAGTTT+TGG - chr1.4:83536724-83536743 MS.gene73446:CDS 30.0%
! CTTTCTTTTCTTCCTAAGTT+TGG - chr1.4:83539313-83539332 MS.gene73446:intron 30.0%
! TCAATACTTTGAGTTTGTTC+TGG - chr1.4:83538592-83538611 MS.gene73446:CDS 30.0%
! TCTAAAATAGGTAGTTGGTA+AGG + chr1.4:83538202-83538221 None:intergenic 30.0%
! TTTTACTCAAAATATCTCCG+GGG - chr1.4:83537815-83537834 MS.gene73446:intron 30.0%
!! ACTTCTCTAAAATAGGTAGT+TGG + chr1.4:83538207-83538226 None:intergenic 30.0%
!! TTTATATCAGTTCTAGGAGT+TGG - chr1.4:83537658-83537677 MS.gene73446:CDS 30.0%
!!! CATTTTCAAAAGATTTGGTG+AGG - chr1.4:83537704-83537723 MS.gene73446:CDS 30.0%
!!! CTTGAAAGTTTTAAAGGACT+TGG - chr1.4:83539016-83539035 MS.gene73446:intron 30.0%
!!! TTTTTAGGGCCAATTGTTTT+AGG - chr1.4:83538452-83538471 MS.gene73446:CDS 30.0%
AACAGGAAGAAGAAATTACC+TGG + chr1.4:83538646-83538665 None:intergenic 35.0%
AACTGAGGAAGGATATTCAT+AGG + chr1.4:83536634-83536653 None:intergenic 35.0%
AAGCTGTTCTTGAGAGATTA+TGG - chr1.4:83537024-83537043 MS.gene73446:intron 35.0%
AAGGATATTCATAGGAACAG+TGG + chr1.4:83536626-83536645 None:intergenic 35.0%
AATCTTACGTGCAAATTGCA+AGG + chr1.4:83539210-83539229 None:intergenic 35.0%
ACTGATGAGCCTAAAACAAT+TGG + chr1.4:83538464-83538483 None:intergenic 35.0%
AGAGATTATGGAAATAGGCT+CGG - chr1.4:83537036-83537055 MS.gene73446:intron 35.0%
AGGTAACTCACTCTAAATTG+AGG - chr1.4:83538053-83538072 MS.gene73446:intron 35.0%
ATGAATATCCTTCCTCAGTT+CGG - chr1.4:83536634-83536653 MS.gene73446:CDS 35.0%
ATGCCATTACAACCAAACTT+AGG + chr1.4:83539328-83539347 None:intergenic 35.0%
ATGGGTATACACTACAGTAA+TGG + chr1.4:83538292-83538311 None:intergenic 35.0%
ATTAAGCAGCTTATCCAAAC+AGG + chr1.4:83536904-83536923 None:intergenic 35.0%
ATTCGTAGCTATGGGTAATA+TGG - chr1.4:83538826-83538845 MS.gene73446:intron 35.0%
CCATTATTAGGTCTTTACCT+AGG - chr1.4:83539523-83539542 MS.gene73446:CDS 35.0%
CCTAGGTAAAGACCTAATAA+TGG + chr1.4:83539526-83539545 None:intergenic 35.0%
CGTTAGACCTGGAATTATAA+AGG + chr1.4:83538417-83538436 None:intergenic 35.0%
CTAAGCACTTATGAGACTTT+GGG + chr1.4:83537358-83537377 None:intergenic 35.0%
CTTCCTAAGTTTGGTTGTAA+TGG - chr1.4:83539322-83539341 MS.gene73446:intron 35.0%
GTTACCTATTTAAGAGTAGC+TGG + chr1.4:83538040-83538059 None:intergenic 35.0%
TATCCCAATATACCTCTGTT+AGG - chr1.4:83538850-83538869 MS.gene73446:intron 35.0%
TATTACTTCTTCGAGAGAGA+GGG + chr1.4:83536717-83536736 None:intergenic 35.0%
TGGTAAGGTGAGAAAATCAA+AGG + chr1.4:83538187-83538206 None:intergenic 35.0%
TGGTATAGGTGAAGAAACAT+TGG - chr1.4:83537510-83537529 MS.gene73446:intron 35.0%
TGTAATCGATCATCTGGATT+GGG - chr1.4:83538944-83538963 MS.gene73446:intron 35.0%
TTATTACTTCTTCGAGAGAG+AGG + chr1.4:83536718-83536737 None:intergenic 35.0%
TTATTAGGTCTTTACCTAGG+TGG - chr1.4:83539526-83539545 MS.gene73446:CDS 35.0%
TTGTAATCGATCATCTGGAT+TGG - chr1.4:83538943-83538962 MS.gene73446:intron 35.0%
! AACCCATTTAGCTCATAATC+GGG - chr1.4:83536666-83536685 MS.gene73446:CDS 35.0%
! CGTAAGATTTTACCTTGATG+TGG - chr1.4:83539221-83539240 MS.gene73446:intron 35.0%
! GAACCCATTTAGCTCATAAT+CGG - chr1.4:83536665-83536684 MS.gene73446:CDS 35.0%
! GATTATGAGCTAAATGGGTT+CGG + chr1.4:83536666-83536685 None:intergenic 35.0%
! TTGCAGTATTGCTATTGAGT+TGG - chr1.4:83538895-83538914 MS.gene73446:intron 35.0%
!!! TATCACGTTCTTTTGGAGTT+TGG - chr1.4:83539178-83539197 MS.gene73446:intron 35.0%
AACTCGTACTAAGCTGTTGT+TGG + chr1.4:83536792-83536811 None:intergenic 40.0%
AAGACTTTGATCTTTCACCC+TGG + chr1.4:83537955-83537974 None:intergenic 40.0%
ACATTCACAACTCACTAGGT+AGG + chr1.4:83537858-83537877 None:intergenic 40.0%
AGTACGAGTTCAACTAGACT+TGG - chr1.4:83536802-83536821 MS.gene73446:intron 40.0%
ATCAGGTCAATTCGTAGCTA+TGG - chr1.4:83538817-83538836 MS.gene73446:intron 40.0%
CAACTTCTATTGGGACAACT+TGG - chr1.4:83539382-83539401 MS.gene73446:CDS 40.0%
CAAGTAGGAGAAGGTTATTC+CGG + chr1.4:83538498-83538517 None:intergenic 40.0%
CATTCACAACTCACTAGGTA+GGG + chr1.4:83537857-83537876 None:intergenic 40.0%
CGATCCAGCTACTCTTAAAT+AGG - chr1.4:83538033-83538052 MS.gene73446:intron 40.0%
CTAATATTGTTGTGGTCTCG+TGG - chr1.4:83538328-83538347 MS.gene73446:intron 40.0%
CTTACTGGGTCTTTCTTCAA+TGG + chr1.4:83536833-83536852 None:intergenic 40.0%
CTTCTAGCAGCACCATTATT+AGG - chr1.4:83539511-83539530 MS.gene73446:CDS 40.0%
GACCCGATTATGAGCTAAAT+GGG + chr1.4:83536671-83536690 None:intergenic 40.0%
GATATTCATAGGAACAGTGG+CGG + chr1.4:83536623-83536642 None:intergenic 40.0%
GCTAAGCACTTATGAGACTT+TGG + chr1.4:83537359-83537378 None:intergenic 40.0%
GTCTAACGAAAGCTGAAAGA+AGG - chr1.4:83538429-83538448 MS.gene73446:CDS 40.0%
GTGGTGAAGAAAAATTCACC+AGG + chr1.4:83537781-83537800 None:intergenic 40.0%
TATCCAAACAGGACCTATGA+AGG + chr1.4:83536893-83536912 None:intergenic 40.0%
TCAGGAAGAAGCTCTTTATC+AGG + chr1.4:83537586-83537605 None:intergenic 40.0%
TCAGGTCAATTCGTAGCTAT+GGG - chr1.4:83538818-83538837 MS.gene73446:intron 40.0%
TCTATTGGGACAACTTGGAT+TGG - chr1.4:83539387-83539406 MS.gene73446:CDS 40.0%
TGAATATCCTTCCTCAGTTC+GGG - chr1.4:83536635-83536654 MS.gene73446:CDS 40.0%
TGACCCGATTATGAGCTAAA+TGG + chr1.4:83536672-83536691 None:intergenic 40.0%
TTACCTTGATGTGGTTCTTG+AGG - chr1.4:83539230-83539249 MS.gene73446:intron 40.0%
TTCTTTGTCGAAGCTCTTCA+AGG + chr1.4:83537636-83537655 None:intergenic 40.0%
TTTCCTCAAGAACCACATCA+AGG + chr1.4:83539236-83539255 None:intergenic 40.0%
! AAACTCTGTCAAGTTGCCAA+CGG + chr1.4:83537931-83537950 None:intergenic 40.0%
! CAACTTGACAGAGTTTTCCA+GGG - chr1.4:83537935-83537954 MS.gene73446:intron 40.0%
! CTGGTTCTTATGTTCAGTAC+AGG - chr1.4:83538611-83538630 MS.gene73446:CDS 40.0%
! GAGTGCTTATCACGTTCTTT+TGG - chr1.4:83539171-83539190 MS.gene73446:intron 40.0%
! TATGGAAATAGGCTCGGTTT+GGG - chr1.4:83537042-83537061 MS.gene73446:intron 40.0%
! TCATCAGTTCTTTTCTACGC+CGG - chr1.4:83538476-83538495 MS.gene73446:CDS 40.0%
! TTATGGAAATAGGCTCGGTT+TGG - chr1.4:83537041-83537060 MS.gene73446:intron 40.0%
!! ATATCAGTTCTAGGAGTTGG+AGG - chr1.4:83537661-83537680 MS.gene73446:CDS 40.0%
!! GTTTAAAGGTGCTATACCGT+TGG - chr1.4:83537912-83537931 MS.gene73446:intron 40.0%
!! TTTTTAAGCATGCCTGCATC+AGG - chr1.4:83538800-83538819 MS.gene73446:intron 40.0%
AACCTTCTCCTACTTGGTTC+TGG - chr1.4:83538502-83538521 MS.gene73446:CDS 45.0%
AACTTGAGTGAGAGGATCTG+TGG + chr1.4:83539491-83539510 None:intergenic 45.0%
AATCGGGTCAACAACTCTTC+CGG - chr1.4:83536682-83536701 MS.gene73446:CDS 45.0%
ACCTCCAAACTGATAGCATC+CGG + chr1.4:83539423-83539442 None:intergenic 45.0%
ACTGGGTCTTTCTTCAATGG+CGG + chr1.4:83536830-83536849 None:intergenic 45.0%
AGATTTCTTCAGCTAGCTCC+TGG - chr1.4:83537760-83537779 MS.gene73446:CDS 45.0%
ATTGGGACACGGGTATAACA+GGG - chr1.4:83538961-83538980 MS.gene73446:intron 45.0%
CCTTAAAAGCCAGCTCTCAA+GGG + chr1.4:83539132-83539151 None:intergenic 45.0%
CGGAATAACCTTCTCCTACT+TGG - chr1.4:83538496-83538515 MS.gene73446:CDS 45.0%
CTTCACATGAAATGCATGCC+AGG + chr1.4:83537893-83537912 None:intergenic 45.0%
CTTTCAGCTTTCGTTAGACC+TGG + chr1.4:83538428-83538447 None:intergenic 45.0%
GAAGCTCCTGTTCAATCAGA+GGG - chr1.4:83537733-83537752 MS.gene73446:CDS 45.0%
GAAGGAAGCAAAAAACACCC+CGG + chr1.4:83537835-83537854 None:intergenic 45.0%
GCTAGAAGAACTTGAGTGAG+AGG + chr1.4:83539499-83539518 None:intergenic 45.0%
GGATATTGTGGCCTTCTCTT+GGG - chr1.4:83538362-83538381 MS.gene73446:intron 45.0%
GTCGTGTGGCAAGTATCAAT+CGG + chr1.4:83538721-83538740 None:intergenic 45.0%
TACCAGAACCAAGTAGGAGA+AGG + chr1.4:83538507-83538526 None:intergenic 45.0%
TGAAGCTCCTGTTCAATCAG+AGG - chr1.4:83537732-83537751 MS.gene73446:CDS 45.0%
TGATAGGACTTCCCAAGAGA+AGG + chr1.4:83538376-83538395 None:intergenic 45.0%
TGGATATTGTGGCCTTCTCT+TGG - chr1.4:83538361-83538380 MS.gene73446:intron 45.0%
TTGCCTTCATAGGTCCTGTT+TGG - chr1.4:83536887-83536906 MS.gene73446:intron 45.0%
! CATGGATGGTCAAACTTGCT+GGG - chr1.4:83539551-83539570 MS.gene73446:CDS 45.0%
! GCAACTTGACAGAGTTTTCC+AGG - chr1.4:83537934-83537953 MS.gene73446:intron 45.0%
! GTGCAGGTTTCTGGATATTG+TGG - chr1.4:83538350-83538369 MS.gene73446:intron 45.0%
! GTTTGGAGGTACGTAGTAGT+CGG - chr1.4:83539433-83539452 MS.gene73446:CDS 45.0%
!! AAGGTGCTGTTGAATCACTG+TGG - chr1.4:83538561-83538580 MS.gene73446:CDS 45.0%
!! ATCAATCGGTGTCAGCTAGA+AGG + chr1.4:83538707-83538726 None:intergenic 45.0%
!! GGACAACTTGGATTGGTTAC+TGG - chr1.4:83539394-83539413 MS.gene73446:CDS 45.0%
!! TTGGATTGGTTACTGGAGAC+CGG - chr1.4:83539401-83539420 MS.gene73446:CDS 45.0%
!!! AGGAGTTGGAGGAAGCATTT+TGG - chr1.4:83537672-83537691 MS.gene73446:CDS 45.0%
!!! CCTTGAGAGCTGGCTTTTAA+GGG - chr1.4:83539130-83539149 MS.gene73446:intron 45.0%
!!! GGAGTTGGAGGAAGCATTTT+GGG - chr1.4:83537673-83537692 MS.gene73446:CDS 45.0%
ACCGGATGCTATCAGTTTGG+AGG - chr1.4:83539419-83539438 MS.gene73446:CDS 50.0%
ATCGGGTCAACAACTCTTCC+GGG - chr1.4:83536683-83536702 MS.gene73446:CDS 50.0%
CACAACTCACTAGGTAGGGA+AGG + chr1.4:83537853-83537872 None:intergenic 50.0%
CAGTACAGGCTTGTCTTTCC+AGG - chr1.4:83538625-83538644 MS.gene73446:CDS 50.0%
CCCTTAAAAGCCAGCTCTCA+AGG + chr1.4:83539133-83539152 None:intergenic 50.0%
CTGACACCCTCTGATTGAAC+AGG + chr1.4:83537742-83537761 None:intergenic 50.0%
GAGACCGGATGCTATCAGTT+TGG - chr1.4:83539416-83539435 MS.gene73446:CDS 50.0%
GATTGGGACACGGGTATAAC+AGG - chr1.4:83538960-83538979 MS.gene73446:intron 50.0%
GCATGGATGGTCAAACTTGC+TGG - chr1.4:83539550-83539569 MS.gene73446:CDS 50.0%
GCTACGAATTGACCTGATGC+AGG + chr1.4:83538815-83538834 None:intergenic 50.0%
GTCTTTACCTAGGTGGTGCA+TGG - chr1.4:83539533-83539552 MS.gene73446:CDS 50.0%
TCATTGGGTCAATGGTCGTG+TGG + chr1.4:83538735-83538754 None:intergenic 50.0%
TGAGTGAGAGGATCTGTGGA+TGG + chr1.4:83539487-83539506 None:intergenic 50.0%
TTACCTAGGTGGTGCATGGA+TGG - chr1.4:83539537-83539556 MS.gene73446:CDS 50.0%
! CGATCATCTGGATTGGGACA+CGG - chr1.4:83538950-83538969 MS.gene73446:intron 50.0%
! GATCATCTGGATTGGGACAC+GGG - chr1.4:83538951-83538970 MS.gene73446:intron 50.0%
!!! CCCTTGAGAGCTGGCTTTTA+AGG - chr1.4:83539129-83539148 MS.gene73446:intron 50.0%
AGAGAGAGGGAAGCTGAACC+CGG + chr1.4:83536704-83536723 None:intergenic 55.0%
CGTAGTAGTCGGAGCAGTAG+TGG - chr1.4:83539444-83539463 MS.gene73446:CDS 55.0%
GGTTCTTCTCCCTTGAGAGC+TGG - chr1.4:83539120-83539139 MS.gene73446:intron 55.0%
TGACCATCCATGCACCACCT+AGG + chr1.4:83539543-83539562 None:intergenic 55.0%
TGCGGGTACCAGAACCAAGT+AGG + chr1.4:83538513-83538532 None:intergenic 55.0%
TTGTTGTGGTCTCGTGGTGC+AGG - chr1.4:83538334-83538353 MS.gene73446:intron 55.0%
GGAGCAACCCGAACTGAGGA+AGG + chr1.4:83536645-83536664 None:intergenic 60.0%
GGTCTCGTGGTGCAGGTTTC+TGG - chr1.4:83538341-83538360 MS.gene73446:intron 60.0%
GTTCGGAGCAACCCGAACTG+AGG + chr1.4:83536649-83536668 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 83536607 83539579 83536607 ID=MS.gene73446
chr1.4 mRNA 83536607 83539579 83536607 ID=MS.gene73446.t1;Parent=MS.gene73446
chr1.4 exon 83539339 83539579 83539339 ID=MS.gene73446.t1.exon1;Parent=MS.gene73446.t1
chr1.4 CDS 83539339 83539579 83539339 ID=cds.MS.gene73446.t1;Parent=MS.gene73446.t1
chr1.4 exon 83538379 83538686 83538379 ID=MS.gene73446.t1.exon2;Parent=MS.gene73446.t1
chr1.4 CDS 83538379 83538686 83538379 ID=cds.MS.gene73446.t1;Parent=MS.gene73446.t1
chr1.4 exon 83537540 83537830 83537540 ID=MS.gene73446.t1.exon3;Parent=MS.gene73446.t1
chr1.4 CDS 83537540 83537830 83537540 ID=cds.MS.gene73446.t1;Parent=MS.gene73446.t1
chr1.4 exon 83536607 83536816 83536607 ID=MS.gene73446.t1.exon4;Parent=MS.gene73446.t1
chr1.4 CDS 83536607 83536816 83536607 ID=cds.MS.gene73446.t1;Parent=MS.gene73446.t1
Gene Sequence

>MS.gene73446

ATGGGATTGGGAACCGCCACTGTTCCTATGAATATCCTTCCTCAGTTCGGGTTGCTCCGAACCCATTTAGCTCATAATCGGGTCAACAACTCTTCCGGGTTCAGCTTCCCTCTCTCTCGAAGAAGTAATAAGAGTTTTGGTAAATTCGTTTGCTTTGCTGTTGATGATGAACTCAGACAGAACCAACAACAGCTTAGTACGAGTTCAACTAGACTTGGCTCCGCCATTGAAGAAAGACCCAGTAAGACCCATTTTTCTTAATTTAACAAGTTTTAGTTTTTTGCCTTCATAGGTCCTGTTTGGATAAGCTGCTTAATTAAGTTGGTGTATCGTATAAGTGCTTCTTTATAAGCTGTTTCGATAACCAAATAATTCATTGATGAGACGGTTTTCGTAGAAGCTATAAGTTGTTTTCATAAGCTGTTCTTGAGAGATTATGGAAATAGGCTCGGTTTGGGTAAAAAAAGTGTAATTAAGTGTTTATAGCATAAGTGCTTATCGTATAAGTGTTTATGTATAAGTTAGATAAAATAAAATCAAACTATTTTCATATAAGATATAAGACCTCTTCATAAACTATCTTGTAAACCTTGAAAATAAGTTGGAAACAACTTACAGATAAGGATATGGCATAAGCTGTTTTCATAAGCTCTTTAGACAGTCTTACAACCAGTACATAACTCAAATAAGCTAATTCGAATGGGTGCATAAGTTGAAACACAAGTTATTAGCTGTTTTTGTAAACTCTCCCAAAGTCTCATAAGTGCTTAGCCAAGAATATAAGTTCAAATAATGTCAATCCAAACAGACTCTTAGTTAATGATTATGCATGCAAAAGTTTTTGAAATAGAAACTTACTGAATTAACTTTCTATTGTTGTGTTGACAATAAAGATATGCTTGATGGTATAGGTGAAGAAACATTGGAAAATTTTAAGGAAGATGGAGAAAGAAGTGTTATCTATGATTTTCTTTATCCTGATAAAGAGCTTCTTCCTGATGATAAAGAAATGAGCATATTTGATCACCTTGAAGAGCTTCGACAAAGAATCTTTATATCAGTTCTAGGAGTTGGAGGAAGCATTTTGGGATGCTTTGCATTTTCAAAAGATTTGGTGAGGCTTCTTGAAGCTCCTGTTCAATCAGAGGGTGTCAGATTTCTTCAGCTAGCTCCTGGTGAATTTTTCTTCACCACTTTAAAGGTAAAATTTTTACTCAAAATATCTCCGGGGTGTTTTTTGCTTCCTTCCCTACCTAGTGAGTTGTGAATGTAATATTTTATTTCCTGGCATGCATTTCATGTGAAGTTTAAAGGTGCTATACCGTTGGCAACTTGACAGAGTTTTCCAGGGTGAAAGATCAAAGTCTTTTGTGTGTGTAAATTACTTTAGCCATTTTCTGCCATAATTAGTTTGTTTTTATTGGGGCGATCCAGCTACTCTTAAATAGGTAACTCACTCTAAATTGAGGAACTCAGTTTAGAGTGTAAAGTAATTAGTATCAACTATTGATGAAGAAAAAAAATAGTTGATATTACATTTACATTCATAATTAATCATTGGTTCGTTGAACTATCAACCTTTGATTTTCTCACCTTACCAACTACCTATTTTAGAGAAGTCAAATTTAGGAGGGATTAGTTATGAGAGAAAAATGCTATTACCCAACCTTTGTATGATATAACCATTACTGTAGTGTATACCCATCTAAATCATGATCAAACTAATATTGTTGTGGTCTCGTGGTGCAGGTTTCTGGATATTGTGGCCTTCTCTTGGGAAGTCCTATCATTCTCTATGAAATCATAGCCTTTATAATTCCAGGTCTAACGAAAGCTGAAAGAAGGTTTTTAGGGCCAATTGTTTTAGGCTCATCAGTTCTTTTCTACGCCGGAATAACCTTCTCCTACTTGGTTCTGGTACCCGCAGCATTAAATTTCTTTGTCAATTATGCTGAAGGTGCTGTTGAATCACTGTGGTCCATTGATCAATACTTTGAGTTTGTTCTGGTTCTTATGTTCAGTACAGGCTTGTCTTTCCAGGTAATTTCTTCTTCCTGTTTTGTACTTCCTTTCTTTTTGAATATATGGTAAACAGTACCTTCTAGCTGACACCGATTGATACTTGCCACACGACCATTGACCCAATGATAAATATAAAATACAATAATATACATAAAAGATAAACTGATTACATTTTTAAGCATGCCTGCATCAGGTCAATTCGTAGCTATGGGTAATATGGATATCCCAATATACCTCTGTTAGGAATTCGAATAAAAGACATGCTATTGCAGTATTGCTATTGAGTTGGATAGCTCATAAGATAGTTTTAATGTTTGTAATCGATCATCTGGATTGGGACACGGGTATAACAGGGTGCCCACGTCTCATATCAAGTAATATAAGATGCTTGAAAGTTTTAAAGGACTTGGTTCTTCTTGAAGAAGATTTATCACTGTTGAACAATGTGGACACTTCATACCTATAATATATAGTAACTAAAAAAAAGACTTGGTTCTTCTCCCTTGAGAGCTGGCTTTTAAGGGAGTGTTTCTCAAATGAATGAGTGCTTATCACGTTCTTTTGGAGTTTGGATTATACCTTGCAATTTGCACGTAAGATTTTACCTTGATGTGGTTCTTGAGGAAACAAGATGTACTATATTTGTAATTTTGTAGTATTGTATTACACTGCTTATTTACAATGCTTTCTTTTCTTCCTAAGTTTGGTTGTAATGGCATCTAAGTCATCTTGTATTTGTAGGTACCGATTATACAACTTCTATTGGGACAACTTGGATTGGTTACTGGAGACCGGATGCTATCAGTTTGGAGGTACGTAGTAGTCGGAGCAGTAGTGGCAGCTGCTATAGTTACGCCATCCACAGATCCTCTCACTCAAGTTCTTCTAGCAGCACCATTATTAGGTCTTTACCTAGGTGGTGCATGGATGGTCAAACTTGCTGGGCGTTAA

Protein sequence

>MS.gene73446.t1

MGLGTATVPMNILPQFGLLRTHLAHNRVNNSSGFSFPLSRRSNKSFGKFVCFAVDDELRQNQQQLSTSSTRLGSAIEERPNMLDGIGEETLENFKEDGERSVIYDFLYPDKELLPDDKEMSIFDHLEELRQRIFISVLGVGGSILGCFAFSKDLVRLLEAPVQSEGVRFLQLAPGEFFFTTLKVSGYCGLLLGSPIILYEIIAFIIPGLTKAERRFLGPIVLGSSVLFYAGITFSYLVLVPAALNFFVNYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPIIQLLLGQLGLVTGDRMLSVWRYVVVGAVVAAAIVTPSTDPLTQVLLAAPLLGLYLGGAWMVKLAGR