Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75737.t1 | XP_003601580.1 | 96 | 201 | 8 | 0 | 1 | 201 | 26 | 226 | 2.80E-107 | 397.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75737.t1 | Q9S750 | 72.6 | 197 | 54 | 0 | 1 | 197 | 40 | 236 | 3.5e-82 | 305.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75737.t1 | G7J9J2 | 96.0 | 201 | 8 | 0 | 1 | 201 | 26 | 226 | 2.0e-107 | 397.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene75737 | 0.813874 | 2.05E-51 | -1.69E-46 |
| MS.gene049596 | MS.gene75737 | 0.817633 | 2.98E-52 | -1.69E-46 |
| MS.gene049622 | MS.gene75737 | 0.814317 | 1.64E-51 | -1.69E-46 |
| MS.gene049989 | MS.gene75737 | 0.853601 | 2.15E-61 | -1.69E-46 |
| MS.gene050297 | MS.gene75737 | 0.871793 | 5.21E-67 | -1.69E-46 |
| MS.gene050648 | MS.gene75737 | 0.811026 | 8.60E-51 | -1.69E-46 |
| MS.gene05124 | MS.gene75737 | 0.820581 | 6.36E-53 | -1.69E-46 |
| MS.gene051263 | MS.gene75737 | 0.82727 | 1.72E-54 | -1.69E-46 |
| MS.gene051423 | MS.gene75737 | 0.814291 | 1.66E-51 | -1.69E-46 |
| MS.gene051629 | MS.gene75737 | 0.815981 | 7.00E-52 | -1.69E-46 |
| MS.gene051742 | MS.gene75737 | 0.801262 | 9.78E-49 | -1.69E-46 |
| MS.gene051816 | MS.gene75737 | 0.800143 | 1.66E-48 | -1.69E-46 |
| MS.gene051955 | MS.gene75737 | 0.833695 | 4.60E-56 | -1.69E-46 |
| MS.gene052143 | MS.gene75737 | 0.840936 | 6.44E-58 | -1.69E-46 |
| MS.gene052308 | MS.gene75737 | 0.832574 | 8.75E-56 | -1.69E-46 |
| MS.gene052367 | MS.gene75737 | 0.878831 | 2.04E-69 | -1.69E-46 |
| MS.gene053173 | MS.gene75737 | 0.86084 | 1.56E-63 | -1.69E-46 |
| MS.gene053348 | MS.gene75737 | 0.830898 | 2.27E-55 | -1.69E-46 |
| MS.gene053416 | MS.gene75737 | 0.832962 | 7.01E-56 | -1.69E-46 |
| MS.gene053417 | MS.gene75737 | 0.832193 | 1.09E-55 | -1.69E-46 |
| MS.gene05369 | MS.gene75737 | 0.830637 | 2.63E-55 | -1.69E-46 |
| MS.gene054551 | MS.gene75737 | 0.86316 | 3.03E-64 | -1.69E-46 |
| MS.gene054593 | MS.gene75737 | 0.825942 | 3.56E-54 | -1.69E-46 |
| MS.gene054643 | MS.gene75737 | 0.80825 | 3.40E-50 | -1.69E-46 |
| MS.gene055308 | MS.gene75737 | 0.844388 | 7.80E-59 | -1.69E-46 |
| MS.gene055578 | MS.gene75737 | 0.849409 | 3.29E-60 | -1.69E-46 |
| MS.gene055957 | MS.gene75737 | 0.878431 | 2.82E-69 | -1.69E-46 |
| MS.gene056041 | MS.gene75737 | 0.869042 | 4.16E-66 | -1.69E-46 |
| MS.gene05640 | MS.gene75737 | 0.833161 | 6.25E-56 | -1.69E-46 |
| MS.gene056526 | MS.gene75737 | 0.807071 | 6.05E-50 | -1.69E-46 |
| MS.gene057458 | MS.gene75737 | 0.828663 | 7.93E-55 | -1.69E-46 |
| MS.gene057483 | MS.gene75737 | 0.82498 | 6.01E-54 | -1.69E-46 |
| MS.gene058196 | MS.gene75737 | 0.806342 | 8.62E-50 | -1.69E-46 |
| MS.gene058818 | MS.gene75737 | 0.83234 | 1.00E-55 | -1.69E-46 |
| MS.gene058844 | MS.gene75737 | 0.8117 | 6.14E-51 | -1.69E-46 |
| MS.gene058853 | MS.gene75737 | 0.813853 | 2.07E-51 | -1.69E-46 |
| MS.gene059300 | MS.gene75737 | 0.827241 | 1.74E-54 | -1.69E-46 |
| MS.gene060473 | MS.gene75737 | 0.850584 | 1.54E-60 | -1.69E-46 |
| MS.gene060565 | MS.gene75737 | 0.849133 | 3.93E-60 | -1.69E-46 |
| MS.gene06057 | MS.gene75737 | 0.834354 | 3.15E-56 | -1.69E-46 |
| MS.gene06093 | MS.gene75737 | 0.846215 | 2.50E-59 | -1.69E-46 |
| MS.gene061099 | MS.gene75737 | 0.847398 | 1.19E-59 | -1.69E-46 |
| MS.gene061260 | MS.gene75737 | 0.878494 | 2.68E-69 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75737.t1 | MTR_3g083230 | 96.020 | 201 | 8 | 0 | 1 | 201 | 26 | 226 | 1.67e-143 | 399 |
| MS.gene75737.t1 | MTR_3g082350 | 80.000 | 65 | 9 | 1 | 110 | 174 | 8 | 68 | 9.42e-31 | 108 |
| MS.gene75737.t1 | MTR_3g083240 | 82.692 | 52 | 9 | 0 | 109 | 160 | 83 | 134 | 9.31e-22 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75737.t1 | AT3G07800 | 72.589 | 197 | 54 | 0 | 1 | 197 | 40 | 236 | 9.41e-106 | 304 |
| MS.gene75737.t1 | AT5G23070 | 66.851 | 181 | 59 | 1 | 1 | 180 | 86 | 266 | 1.24e-91 | 270 |
Find 52 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTGGGGCTGCCTCAATA+AGG | 0.285622 | 3.3:-69997866 | None:intergenic |
| GGTAAAATTGTCGTCGTTGC+AGG | 0.308301 | 3.3:+69997463 | MS.gene75737:CDS |
| TTTGTGGGTCCCATGTTTGC+TGG | 0.311613 | 3.3:+69996210 | None:intergenic |
| TGGATGCAGTTGGATGTTAT+TGG | 0.318715 | 3.3:+69997376 | MS.gene75737:intron |
| GAGAAACAAACTGAACTAAT+TGG | 0.334941 | 3.3:+69997732 | MS.gene75737:CDS |
| TTAATTATTTATCAAACAAC+TGG | 0.346132 | 3.3:-69997882 | None:intergenic |
| TCTTTGAACAACATCAAATC+TGG | 0.352909 | 3.3:-69996507 | None:intergenic |
| CAAATCTGGCAATGCCCAAC+AGG | 0.359213 | 3.3:-69996493 | None:intergenic |
| CGGGATTAAATTTCCCTGTT+GGG | 0.403088 | 3.3:+69996479 | MS.gene75737:CDS |
| AATTGTCGTCGTTGCAGGCC+TGG | 0.427705 | 3.3:+69997468 | MS.gene75737:CDS |
| TGGTTCTTTAGGAGAAGCTT+TGG | 0.432729 | 3.3:+69997606 | MS.gene75737:intron |
| TTCTTTACCTTGAGGAAGAC+GGG | 0.457820 | 3.3:+69997708 | MS.gene75737:CDS |
| TTAGTTACAGTATCAGCAAT+TGG | 0.463498 | 3.3:-69997648 | None:intergenic |
| GCTGTCAAGAAGTGTGTCTT+CGG | 0.463980 | 3.3:+69997819 | MS.gene75737:CDS |
| AACTGGGGCTGCCTCAATAA+GGG | 0.464936 | 3.3:-69997865 | None:intergenic |
| CGGACTTAATACGACGAAGA+AGG | 0.470773 | 3.3:-69996245 | None:intergenic |
| ACATAGTGATGGCGGCAAAC+CGG | 0.478921 | 3.3:-69997774 | None:intergenic |
| CGTCTTCCTCAAGGTAAAGA+AGG | 0.488284 | 3.3:-69997706 | None:intergenic |
| CGGTCATGAGGCCTATCAAA+AGG | 0.492616 | 3.3:+69996536 | MS.gene75737:CDS |
| ACGGGATTAAATTTCCCTGT+TGG | 0.499672 | 3.3:+69996478 | MS.gene75737:CDS |
| CTTCTTTACCTTGAGGAAGA+CGG | 0.507473 | 3.3:+69997707 | MS.gene75737:CDS |
| TGGAAGTGATTCCCTTATTG+AGG | 0.511120 | 3.3:+69997854 | MS.gene75737:CDS |
| ATGTTGTTCAAAGATAAATA+CGG | 0.514186 | 3.3:+69996516 | MS.gene75737:CDS |
| TGCCGCCATCACTATGTGAA+TGG | 0.524204 | 3.3:+69997780 | MS.gene75737:CDS |
| AACAAACTGAACTAATTGGT+GGG | 0.528191 | 3.3:+69997736 | MS.gene75737:CDS |
| TTTCTCTCCCGTCTTCCTCA+AGG | 0.528615 | 3.3:-69997715 | None:intergenic |
| CAGCTCGTTGTGAACTATGC+GGG | 0.536830 | 3.3:+69997676 | MS.gene75737:CDS |
| GGACTTAATACGACGAAGAA+GGG | 0.537672 | 3.3:-69996244 | None:intergenic |
| ACTCTGTTGTGACCCATGAC+GGG | 0.543331 | 3.3:+69996460 | MS.gene75737:CDS |
| TGGGGCTGATTTATACATGC+CGG | 0.547414 | 3.3:+69997755 | MS.gene75737:CDS |
| GGGAAATTTAATCCCGTCAT+GGG | 0.553176 | 3.3:-69996472 | None:intergenic |
| ACCTCAAGTAATCACCATCC+AGG | 0.557271 | 3.3:-69997486 | None:intergenic |
| AAACAAACTGAACTAATTGG+TGG | 0.568465 | 3.3:+69997735 | MS.gene75737:CDS |
| AGGGAAATTTAATCCCGTCA+TGG | 0.569407 | 3.3:-69996473 | None:intergenic |
| GTCGTCGTTGCAGGCCTGGA+TGG | 0.573763 | 3.3:+69997472 | MS.gene75737:CDS |
| ATTAAGTCCGAAGTTGATAA+CGG | 0.580529 | 3.3:+69996258 | MS.gene75737:CDS |
| TGCAAGGCTGCTGATGAAGA+TGG | 0.584415 | 3.3:+69997442 | MS.gene75737:CDS |
| AGTCCGAAGTTGATAACGGC+AGG | 0.586524 | 3.3:+69996262 | MS.gene75737:CDS |
| GCCTGGATGGTGATTACTTG+AGG | 0.593913 | 3.3:+69997485 | MS.gene75737:CDS |
| TAATTATTTATCAAACAACT+GGG | 0.597416 | 3.3:-69997881 | None:intergenic |
| TGTGAATGGTCAAGTTGTTG+TGG | 0.597690 | 3.3:+69997794 | MS.gene75737:CDS |
| GACTCTGTTGTGACCCATGA+CGG | 0.598002 | 3.3:+69996459 | MS.gene75737:CDS |
| GTACCTGCCGTTATCAACTT+CGG | 0.610552 | 3.3:-69996265 | None:intergenic |
| AACGCGCCTTCTTTACCTTG+AGG | 0.616597 | 3.3:+69997700 | MS.gene75737:CDS |
| CAAAGATAAATACGGTCATG+AGG | 0.624640 | 3.3:+69996524 | MS.gene75737:CDS |
| ACAAACTGAACTAATTGGTG+GGG | 0.635305 | 3.3:+69997737 | MS.gene75737:CDS |
| CTTGACCATTCACATAGTGA+TGG | 0.636820 | 3.3:-69997785 | None:intergenic |
| AAATCTGGCAATGCCCAACA+GGG | 0.637311 | 3.3:-69996492 | None:intergenic |
| GACCATTCACATAGTGATGG+CGG | 0.647772 | 3.3:-69997782 | None:intergenic |
| AATTATTTATCAAACAACTG+GGG | 0.668394 | 3.3:-69997880 | None:intergenic |
| GGATGTTATTGGTATAGACG+AGG | 0.669586 | 3.3:+69997387 | MS.gene75737:CDS |
| ACAGCTCGTTGTGAACTATG+CGG | 0.719807 | 3.3:+69997675 | MS.gene75737:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTAATAACATAATGTA+TGG | + | chr3.3:69997296-69997315 | MS.gene75737:intron | 10.0% |
| !! | TTCAAAAGAAAAAAAAGTTA+TGG | + | chr3.3:69996915-69996934 | MS.gene75737:intron | 15.0% |
| !!! | ATTATCATAATTTTTTGTGA+AGG | + | chr3.3:69996391-69996410 | MS.gene75737:intron | 15.0% |
| !!! | GTAAGTTTTTTTTTAAATCT+CGG | + | chr3.3:69997261-69997280 | MS.gene75737:intron | 15.0% |
| !! | ATGTTGTTCAAAGATAAATA+CGG | + | chr3.3:69996516-69996535 | MS.gene75737:CDS | 20.0% |
| !! | TTCAAATTGTGATCAATATA+TGG | + | chr3.3:69996690-69996709 | MS.gene75737:intron | 20.0% |
| !!! | ATTTTGAGAAAAAAATGTCA+AGG | + | chr3.3:69997512-69997531 | MS.gene75737:intron | 20.0% |
| ! | AACAAGAAGAAAAAAGAATC+TGG | - | chr3.3:69996304-69996323 | None:intergenic | 25.0% |
| ! | ACAAGAAGAAAAAAGAATCT+GGG | - | chr3.3:69996303-69996322 | None:intergenic | 25.0% |
| ! | ACACCATTAGAAATTTAGAA+GGG | - | chr3.3:69997582-69997601 | None:intergenic | 25.0% |
| ! | GATGAAATGTTATGATTACT+AGG | + | chr3.3:69996345-69996364 | MS.gene75737:intron | 25.0% |
| ! | GTGATTTAAAAAACCTTTAG+TGG | - | chr3.3:69997086-69997105 | None:intergenic | 25.0% |
| ! | TATTGTTGCATTTGCAATTA+TGG | + | chr3.3:69997017-69997036 | MS.gene75737:intron | 25.0% |
| !! | AAATTTCTAATGGTGTGTTT+TGG | + | chr3.3:69997586-69997605 | MS.gene75737:intron | 25.0% |
| !! | CATTGAAATTACCTTTTGAT+AGG | - | chr3.3:69996550-69996569 | None:intergenic | 25.0% |
| !!! | AGAAATTTTGATGATACAAC+TGG | + | chr3.3:69997058-69997077 | MS.gene75737:intron | 25.0% |
| !!! | ATAGCATTGATTGAATCAAT+TGG | + | chr3.3:69997107-69997126 | MS.gene75737:intron | 25.0% |
| !!! | ATTTTAGTAGTTACAAGTGT+TGG | + | chr3.3:69996632-69996651 | MS.gene75737:intron | 25.0% |
| !!! | TAATTTTTTGTGAAGGAATG+TGG | + | chr3.3:69996398-69996417 | MS.gene75737:intron | 25.0% |
| !!! | TCTTTTGAAAACTCAATATC+TGG | - | chr3.3:69996904-69996923 | None:intergenic | 25.0% |
| !!! | TGCTGAATGTGTTATTATTT+TGG | + | chr3.3:69997356-69997375 | MS.gene75737:intron | 25.0% |
| AAACAAACTGAACTAATTGG+TGG | + | chr3.3:69997735-69997754 | MS.gene75737:CDS | 30.0% | |
| AACAAACTGAACTAATTGGT+GGG | + | chr3.3:69997736-69997755 | MS.gene75737:CDS | 30.0% | |
| AATTATGGTTGTGGTTACAT+AGG | + | chr3.3:69997032-69997051 | MS.gene75737:intron | 30.0% | |
| CACACCATTAGAAATTTAGA+AGG | - | chr3.3:69997583-69997602 | None:intergenic | 30.0% | |
| GAAAAAAAAGTTATGGCTCA+AGG | + | chr3.3:69996922-69996941 | MS.gene75737:intron | 30.0% | |
| GAGAAACAAACTGAACTAAT+TGG | + | chr3.3:69997732-69997751 | MS.gene75737:CDS | 30.0% | |
| TCACCCTTCTAAATTTCTAA+TGG | + | chr3.3:69997576-69997595 | MS.gene75737:intron | 30.0% | |
| TCTTTGAACAACATCAAATC+TGG | - | chr3.3:69996510-69996529 | None:intergenic | 30.0% | |
| TGTGATCAATATATGGTTCA+AGG | + | chr3.3:69996697-69996716 | MS.gene75737:intron | 30.0% | |
| TGTTGGAGTAATCATATCAA+TGG | + | chr3.3:69996649-69996668 | MS.gene75737:intron | 30.0% | |
| TTAGTTACAGTATCAGCAAT+TGG | - | chr3.3:69997651-69997670 | None:intergenic | 30.0% | |
| !! | ATTAAGTCCGAAGTTGATAA+CGG | + | chr3.3:69996258-69996277 | MS.gene75737:CDS | 30.0% |
| !! | CATAGATCTGGCTTTAAATT+GGG | + | chr3.3:69996827-69996846 | MS.gene75737:intron | 30.0% |
| !!! | GTTATTATTTTGGATGCAGT+TGG | + | chr3.3:69997366-69997385 | MS.gene75737:intron | 30.0% |
| AAAACTCAATATCTGGCCTA+AGG | - | chr3.3:69996897-69996916 | None:intergenic | 35.0% | |
| ACAAACTGAACTAATTGGTG+GGG | + | chr3.3:69997737-69997756 | MS.gene75737:CDS | 35.0% | |
| CAAAGATAAATACGGTCATG+AGG | + | chr3.3:69996524-69996543 | MS.gene75737:CDS | 35.0% | |
| TGCATTTGCAATTATGGTTG+TGG | + | chr3.3:69997023-69997042 | MS.gene75737:intron | 35.0% | |
| ! | CCAATTTAAAGCCAGATCTA+TGG | - | chr3.3:69996829-69996848 | None:intergenic | 35.0% |
| ! | CTTATATGACTTTTGCTGCA+AGG | + | chr3.3:69997426-69997445 | MS.gene75737:CDS | 35.0% |
| !! | CCATAGATCTGGCTTTAAAT+TGG | + | chr3.3:69996826-69996845 | MS.gene75737:intron | 35.0% |
| !!! | ATGGTGTGTTTTGGTTCTTT+AGG | + | chr3.3:69997595-69997614 | MS.gene75737:intron | 35.0% |
| AATTGAACCCGAGACCTTAT+GGG | - | chr3.3:69996777-69996796 | None:intergenic | 40.0% | |
| ACGGGATTAAATTTCCCTGT+TGG | + | chr3.3:69996478-69996497 | MS.gene75737:CDS | 40.0% | |
| AGGGAAATTTAATCCCGTCA+TGG | - | chr3.3:69996476-69996495 | None:intergenic | 40.0% | |
| AGTCTTAAGTCAACACCACA+AGG | - | chr3.3:69996741-69996760 | None:intergenic | 40.0% | |
| ATGTTACTATGTCAGTGACG+TGG | + | chr3.3:69997196-69997215 | MS.gene75737:intron | 40.0% | |
| ATTGGACTCCTCGGATTAAT+CGG | + | chr3.3:69996870-69996889 | MS.gene75737:intron | 40.0% | |
| CGGGATTAAATTTCCCTGTT+GGG | + | chr3.3:69996479-69996498 | MS.gene75737:CDS | 40.0% | |
| CTTCTTTACCTTGAGGAAGA+CGG | + | chr3.3:69997707-69997726 | MS.gene75737:CDS | 40.0% | |
| CTTGACCATTCACATAGTGA+TGG | - | chr3.3:69997788-69997807 | None:intergenic | 40.0% | |
| GATACAACTGGTACCACTAA+AGG | + | chr3.3:69997070-69997089 | MS.gene75737:intron | 40.0% | |
| GGACTTAATACGACGAAGAA+GGG | - | chr3.3:69996247-69996266 | None:intergenic | 40.0% | |
| GGATGTTATTGGTATAGACG+AGG | + | chr3.3:69997387-69997406 | MS.gene75737:CDS | 40.0% | |
| GGGAAATTTAATCCCGTCAT+GGG | - | chr3.3:69996475-69996494 | None:intergenic | 40.0% | |
| GTCTTCGGATCTCAAAAAGT+TGG | + | chr3.3:69997834-69997853 | MS.gene75737:CDS | 40.0% | |
| TGGAAGTGATTCCCTTATTG+AGG | + | chr3.3:69997854-69997873 | MS.gene75737:CDS | 40.0% | |
| TGGATGCAGTTGGATGTTAT+TGG | + | chr3.3:69997376-69997395 | MS.gene75737:intron | 40.0% | |
| TTCTTTACCTTGAGGAAGAC+GGG | + | chr3.3:69997708-69997727 | MS.gene75737:CDS | 40.0% | |
| TTTAAATTGGGCTCCACAAG+TGG | + | chr3.3:69996839-69996858 | MS.gene75737:intron | 40.0% | |
| ! | TGGTTCTTTAGGAGAAGCTT+TGG | + | chr3.3:69997606-69997625 | MS.gene75737:intron | 40.0% |
| ! | TGTGAATGGTCAAGTTGTTG+TGG | + | chr3.3:69997794-69997813 | MS.gene75737:CDS | 40.0% |
| !! | ATTCCTTCCGGTGTCAATTT+TGG | + | chr3.3:69996794-69996813 | MS.gene75737:intron | 40.0% |
| !! | GTGGTGTTGACTTAAGACTT+TGG | + | chr3.3:69996742-69996761 | MS.gene75737:intron | 40.0% |
| AAATCTGGCAATGCCCAACA+GGG | - | chr3.3:69996495-69996514 | None:intergenic | 45.0% | |
| ACAGCTCGTTGTGAACTATG+CGG | + | chr3.3:69997675-69997694 | MS.gene75737:CDS | 45.0% | |
| ACCTCAAGTAATCACCATCC+AGG | - | chr3.3:69997489-69997508 | None:intergenic | 45.0% | |
| ACTATGTCAGTGACGTGGTT+GGG | + | chr3.3:69997201-69997220 | MS.gene75737:intron | 45.0% | |
| ATTGAACCCGAGACCTTATG+GGG | - | chr3.3:69996776-69996795 | None:intergenic | 45.0% | |
| CGGACTTAATACGACGAAGA+AGG | - | chr3.3:69996248-69996267 | None:intergenic | 45.0% | |
| CGTCTTCCTCAAGGTAAAGA+AGG | - | chr3.3:69997709-69997728 | None:intergenic | 45.0% | |
| GAATTGAACCCGAGACCTTA+TGG | - | chr3.3:69996778-69996797 | None:intergenic | 45.0% | |
| GACCATTCACATAGTGATGG+CGG | - | chr3.3:69997785-69997804 | None:intergenic | 45.0% | |
| GGTAAAATTGTCGTCGTTGC+AGG | + | chr3.3:69997463-69997482 | MS.gene75737:CDS | 45.0% | |
| GTACCTGCCGTTATCAACTT+CGG | - | chr3.3:69996268-69996287 | None:intergenic | 45.0% | |
| TACTATGTCAGTGACGTGGT+TGG | + | chr3.3:69997200-69997219 | MS.gene75737:intron | 45.0% | |
| TAGCCCACCAAAATTGACAC+CGG | - | chr3.3:69996804-69996823 | None:intergenic | 45.0% | |
| ! | GCTGTCAAGAAGTGTGTCTT+CGG | + | chr3.3:69997819-69997838 | MS.gene75737:CDS | 45.0% |
| ! | TGGGGCTGATTTATACATGC+CGG | + | chr3.3:69997755-69997774 | MS.gene75737:CDS | 45.0% |
| ! | TTTGGAGTGTGATCCCCATA+AGG | + | chr3.3:69996760-69996779 | MS.gene75737:intron | 45.0% |
| !! | CTTCCGGTGTCAATTTTGGT+GGG | + | chr3.3:69996798-69996817 | MS.gene75737:intron | 45.0% |
| AACGCGCCTTCTTTACCTTG+AGG | + | chr3.3:69997700-69997719 | MS.gene75737:CDS | 50.0% | |
| AACTGGGGCTGCCTCAATAA+GGG | - | chr3.3:69997868-69997887 | None:intergenic | 50.0% | |
| AATTGGGCTCCACAAGTGGA+CGG | + | chr3.3:69996843-69996862 | MS.gene75737:intron | 50.0% | |
| ACCACAAGGTCAACCCAAGT+GGG | - | chr3.3:69996727-69996746 | None:intergenic | 50.0% | |
| ACTCTGTTGTGACCCATGAC+GGG | + | chr3.3:69996460-69996479 | MS.gene75737:CDS | 50.0% | |
| CAAATCTGGCAATGCCCAAC+AGG | - | chr3.3:69996496-69996515 | None:intergenic | 50.0% | |
| CAGCTCGTTGTGAACTATGC+GGG | + | chr3.3:69997676-69997695 | MS.gene75737:CDS | 50.0% | |
| CCAATCTAACCGTCCACTTG+TGG | - | chr3.3:69996855-69996874 | None:intergenic | 50.0% | |
| CCACAAGTGGACGGTTAGAT+TGG | + | chr3.3:69996852-69996871 | MS.gene75737:intron | 50.0% | |
| CCACCAAAATTGACACCGGA+AGG | - | chr3.3:69996800-69996819 | None:intergenic | 50.0% | |
| CCTAAGGACCGATTAATCCG+AGG | - | chr3.3:69996881-69996900 | None:intergenic | 50.0% | |
| CCTCGGATTAATCGGTCCTT+AGG | + | chr3.3:69996878-69996897 | MS.gene75737:intron | 50.0% | |
| CGGTCATGAGGCCTATCAAA+AGG | + | chr3.3:69996536-69996555 | MS.gene75737:CDS | 50.0% | |
| CTATGTCAGTGACGTGGTTG+GGG | + | chr3.3:69997202-69997221 | MS.gene75737:intron | 50.0% | |
| GACGGTTAGATTGGACTCCT+CGG | + | chr3.3:69996861-69996880 | MS.gene75737:intron | 50.0% | |
| GACTCTGTTGTGACCCATGA+CGG | + | chr3.3:69996459-69996478 | MS.gene75737:CDS | 50.0% | |
| GCCTGGATGGTGATTACTTG+AGG | + | chr3.3:69997485-69997504 | MS.gene75737:CDS | 50.0% | |
| GGTTCAAGGTAACCCCACTT+GGG | + | chr3.3:69996711-69996730 | MS.gene75737:intron | 50.0% | |
| GTCTCGGGTTCAATTCCTTC+CGG | + | chr3.3:69996782-69996801 | MS.gene75737:intron | 50.0% | |
| GTGTGATCCCCATAAGGTCT+CGG | + | chr3.3:69996766-69996785 | MS.gene75737:intron | 50.0% | |
| TGCAAGGCTGCTGATGAAGA+TGG | + | chr3.3:69997442-69997461 | MS.gene75737:CDS | 50.0% | |
| TGCCGCCATCACTATGTGAA+TGG | + | chr3.3:69997780-69997799 | MS.gene75737:CDS | 50.0% | |
| TGGTTCAAGGTAACCCCACT+TGG | + | chr3.3:69996710-69996729 | MS.gene75737:intron | 50.0% | |
| TGTGATCCCCATAAGGTCTC+GGG | + | chr3.3:69996767-69996786 | MS.gene75737:intron | 50.0% | |
| TTTCTCTCCCGTCTTCCTCA+AGG | - | chr3.3:69997718-69997737 | None:intergenic | 50.0% | |
| !! | ACATAGTGATGGCGGCAAAC+CGG | - | chr3.3:69997777-69997796 | None:intergenic | 50.0% |
| !! | AGTCCGAAGTTGATAACGGC+AGG | + | chr3.3:69996262-69996281 | MS.gene75737:CDS | 50.0% |
| !! | CCTTCCGGTGTCAATTTTGG+TGG | + | chr3.3:69996797-69996816 | MS.gene75737:intron | 50.0% |
| AATTGTCGTCGTTGCAGGCC+TGG | + | chr3.3:69997468-69997487 | MS.gene75737:CDS | 55.0% | |
| CAACTGGGGCTGCCTCAATA+AGG | - | chr3.3:69997869-69997888 | None:intergenic | 55.0% | |
| CACCACAAGGTCAACCCAAG+TGG | - | chr3.3:69996728-69996747 | None:intergenic | 55.0% | |
| CCACAAGGTCAACCCAAGTG+GGG | - | chr3.3:69996726-69996745 | None:intergenic | 55.0% | |
| !! | GGTGGGCTAGTCCATAGATC+TGG | + | chr3.3:69996815-69996834 | MS.gene75737:intron | 55.0% |
| !! | CCCCACTTGGGTTGACCTTG+TGG | + | chr3.3:69996723-69996742 | MS.gene75737:intron | 60.0% |
| GTCGTCGTTGCAGGCCTGGA+TGG | + | chr3.3:69997472-69997491 | MS.gene75737:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 69996222 | 69997893 | 69996222 | ID=MS.gene75737 |
| chr3.3 | mRNA | 69996222 | 69997893 | 69996222 | ID=MS.gene75737.t1;Parent=MS.gene75737 |
| chr3.3 | exon | 69996222 | 69996283 | 69996222 | ID=MS.gene75737.t1.exon1;Parent=MS.gene75737.t1 |
| chr3.3 | CDS | 69996222 | 69996283 | 69996222 | ID=cds.MS.gene75737.t1;Parent=MS.gene75737.t1 |
| chr3.3 | exon | 69996413 | 69996557 | 69996413 | ID=MS.gene75737.t1.exon2;Parent=MS.gene75737.t1 |
| chr3.3 | CDS | 69996413 | 69996557 | 69996413 | ID=cds.MS.gene75737.t1;Parent=MS.gene75737.t1 |
| chr3.3 | exon | 69997385 | 69997506 | 69997385 | ID=MS.gene75737.t1.exon3;Parent=MS.gene75737.t1 |
| chr3.3 | CDS | 69997385 | 69997506 | 69997385 | ID=cds.MS.gene75737.t1;Parent=MS.gene75737.t1 |
| chr3.3 | exon | 69997617 | 69997893 | 69997617 | ID=MS.gene75737.t1.exon4;Parent=MS.gene75737.t1 |
| chr3.3 | CDS | 69997617 | 69997893 | 69997617 | ID=cds.MS.gene75737.t1;Parent=MS.gene75737.t1 |
| Gene Sequence |
| Protein sequence |
