Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76046.t1 | XP_003592116.1 | 97.4 | 386 | 10 | 0 | 1 | 386 | 1 | 386 | 1.30E-208 | 735.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76046.t1 | G7ICZ3 | 97.4 | 386 | 10 | 0 | 1 | 386 | 1 | 386 | 9.1e-209 | 735.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene76046 | 0.824321 | 8.60E-54 | -1.69E-46 |
| MS.gene049166 | MS.gene76046 | 0.803762 | 2.99E-49 | -1.69E-46 |
| MS.gene04917 | MS.gene76046 | 0.821839 | 3.26E-53 | -1.69E-46 |
| MS.gene049703 | MS.gene76046 | -0.800917 | 1.15E-48 | -1.69E-46 |
| MS.gene050114 | MS.gene76046 | 0.805291 | 1.43E-49 | -1.69E-46 |
| MS.gene050317 | MS.gene76046 | 0.829422 | 5.19E-55 | -1.69E-46 |
| MS.gene050359 | MS.gene76046 | 0.8053 | 1.43E-49 | -1.69E-46 |
| MS.gene050386 | MS.gene76046 | 0.809928 | 1.48E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene76046 | 0.822787 | 1.96E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene76046 | 0.800367 | 1.49E-48 | -1.69E-46 |
| MS.gene050941 | MS.gene76046 | 0.826143 | 3.19E-54 | -1.69E-46 |
| MS.gene051003 | MS.gene76046 | 0.810518 | 1.11E-50 | -1.69E-46 |
| MS.gene051122 | MS.gene76046 | 0.813978 | 1.95E-51 | -1.69E-46 |
| MS.gene051184 | MS.gene76046 | 0.829736 | 4.36E-55 | -1.69E-46 |
| MS.gene051245 | MS.gene76046 | 0.82105 | 4.96E-53 | -1.69E-46 |
| MS.gene051987 | MS.gene76046 | 0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene052434 | MS.gene76046 | 0.838774 | 2.35E-57 | -1.69E-46 |
| MS.gene052527 | MS.gene76046 | 0.807795 | 4.24E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene76046 | 0.825288 | 5.09E-54 | -1.69E-46 |
| MS.gene05344 | MS.gene76046 | -0.812375 | 4.38E-51 | -1.69E-46 |
| MS.gene053726 | MS.gene76046 | 0.808627 | 2.82E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene76046 | 0.827593 | 1.44E-54 | -1.69E-46 |
| MS.gene056181 | MS.gene76046 | 0.827692 | 1.36E-54 | -1.69E-46 |
| MS.gene056787 | MS.gene76046 | 0.838123 | 3.47E-57 | -1.69E-46 |
| MS.gene056849 | MS.gene76046 | 0.82578 | 3.89E-54 | -1.69E-46 |
| MS.gene057055 | MS.gene76046 | 0.826303 | 2.92E-54 | -1.69E-46 |
| MS.gene057140 | MS.gene76046 | 0.801157 | 1.03E-48 | -1.69E-46 |
| MS.gene057234 | MS.gene76046 | 0.808211 | 3.46E-50 | -1.69E-46 |
| MS.gene057452 | MS.gene76046 | -0.808515 | 2.98E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene76046 | 0.80862 | 2.83E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene76046 | 0.815737 | 7.93E-52 | -1.69E-46 |
| MS.gene058055 | MS.gene76046 | 0.800236 | 1.58E-48 | -1.69E-46 |
| MS.gene058126 | MS.gene76046 | 0.804913 | 1.72E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene76046 | 0.813762 | 2.17E-51 | -1.69E-46 |
| MS.gene058278 | MS.gene76046 | 0.812588 | 3.93E-51 | -1.69E-46 |
| MS.gene058399 | MS.gene76046 | 0.814004 | 1.92E-51 | -1.69E-46 |
| MS.gene058758 | MS.gene76046 | 0.81891 | 1.53E-52 | -1.69E-46 |
| MS.gene059360 | MS.gene76046 | 0.815759 | 7.84E-52 | -1.69E-46 |
| MS.gene059719 | MS.gene76046 | 0.806664 | 7.37E-50 | -1.69E-46 |
| MS.gene060084 | MS.gene76046 | 0.828372 | 9.33E-55 | -1.69E-46 |
| MS.gene060296 | MS.gene76046 | 0.809759 | 1.61E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene76046 | 0.809527 | 1.81E-50 | -1.69E-46 |
| MS.gene060563 | MS.gene76046 | 0.80142 | 9.08E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76046.t1 | MTR_1g098920 | 97.778 | 450 | 10 | 0 | 1 | 450 | 1 | 450 | 0.0 | 915 |
| MS.gene76046.t1 | MTR_6g035315 | 71.194 | 427 | 112 | 5 | 24 | 445 | 22 | 442 | 0.0 | 543 |
| MS.gene76046.t1 | MTR_2g098080 | 47.425 | 369 | 155 | 9 | 89 | 449 | 79 | 416 | 1.88e-94 | 292 |
| MS.gene76046.t1 | MTR_7g103390 | 45.600 | 250 | 108 | 7 | 10 | 252 | 1 | 229 | 8.79e-59 | 199 |
| MS.gene76046.t1 | MTR_1g061640 | 58.025 | 162 | 60 | 3 | 92 | 252 | 95 | 249 | 1.90e-54 | 189 |
| MS.gene76046.t1 | MTR_1g061640 | 48.193 | 83 | 43 | 0 | 365 | 447 | 400 | 482 | 3.14e-19 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene76046.t1 | AT1G21200 | 57.826 | 460 | 162 | 10 | 1 | 447 | 1 | 441 | 1.25e-162 | 466 |
| MS.gene76046.t1 | AT1G21200 | 57.826 | 460 | 162 | 10 | 1 | 447 | 1 | 441 | 1.25e-162 | 466 |
| MS.gene76046.t1 | AT1G76870 | 49.888 | 445 | 152 | 14 | 7 | 445 | 2 | 381 | 3.96e-117 | 348 |
| MS.gene76046.t1 | AT1G76870 | 49.888 | 445 | 152 | 14 | 7 | 445 | 2 | 381 | 3.96e-117 | 348 |
| MS.gene76046.t1 | AT1G76870 | 49.888 | 445 | 152 | 14 | 7 | 445 | 2 | 381 | 3.96e-117 | 348 |
| MS.gene76046.t1 | AT3G10040 | 33.034 | 445 | 214 | 16 | 28 | 447 | 29 | 414 | 3.82e-61 | 205 |
Find 103 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAGGGAGTAGAGGTAAAA+AGG | 0.185988 | 1.1:-71118638 | MS.gene76046:CDS |
| CAAAAGTATTAGCATGATTT+TGG | 0.192898 | 1.1:+71117972 | None:intergenic |
| TGCAGTTAGCTCTCCGTAAT+AGG | 0.247641 | 1.1:-71118159 | MS.gene76046:CDS |
| CAAAATCATGCTAATACTTT+TGG | 0.261782 | 1.1:-71117971 | MS.gene76046:CDS |
| AGTATTTCAATGACAGATTA+TGG | 0.262386 | 1.1:-71118739 | MS.gene76046:CDS |
| TGATTTACCTGGATCAATTC+AGG | 0.278938 | 1.1:-71118893 | MS.gene76046:CDS |
| GTTCTTACCATAATTGTAAT+AGG | 0.279481 | 1.1:-71118219 | MS.gene76046:CDS |
| ATTACAGCTGTTTCTTATAT+CGG | 0.281358 | 1.1:-71118559 | MS.gene76046:CDS |
| CGTGGTGAGGGGCGGTTAAA+TGG | 0.283530 | 1.1:-71118025 | MS.gene76046:CDS |
| AATGCAGCCTATTACAATTA+TGG | 0.286210 | 1.1:+71118212 | None:intergenic |
| AGAGCAAAAGTTACAAATTC+AGG | 0.286726 | 1.1:-71117798 | MS.gene76046:CDS |
| AAAACCATCCTCCATAAAAC+TGG | 0.303767 | 1.1:+71118672 | None:intergenic |
| AATTCAATGATCTTAATAAA+AGG | 0.306147 | 1.1:-71118396 | MS.gene76046:CDS |
| CTCGTATCAGCGTGGACAAA+TGG | 0.372153 | 1.1:-71117912 | MS.gene76046:CDS |
| CAGATTATGGTAAGGGAGAA+AGG | 0.389421 | 1.1:-71118726 | MS.gene76046:CDS |
| TTTGGTAGCTTTGATTTACC+TGG | 0.427242 | 1.1:-71118904 | MS.gene76046:CDS |
| GGTGTTGGTGGTAATTCTTT+TGG | 0.433044 | 1.1:-71118922 | MS.gene76046:CDS |
| TGCATTGAAGATTGCAATGC+AGG | 0.434565 | 1.1:+71118178 | None:intergenic |
| TATCATGATCATCCCTATTA+CGG | 0.439036 | 1.1:+71118146 | None:intergenic |
| AGATTATGGTAAGGGAGAAA+GGG | 0.443869 | 1.1:-71118725 | MS.gene76046:CDS |
| TCGTATCAGCGTGGACAAAT+GGG | 0.448709 | 1.1:-71117911 | MS.gene76046:CDS |
| GCAGTTAGCTCTCCGTAATA+GGG | 0.450748 | 1.1:-71118158 | MS.gene76046:CDS |
| GGGAACTTCTTGTGAGGTTG+TGG | 0.453879 | 1.1:-71118344 | MS.gene76046:CDS |
| TGTGAAGTGGACTGATAATA+TGG | 0.455278 | 1.1:-71118593 | MS.gene76046:CDS |
| TCTGATGGTGTTGGTGGAAG+TGG | 0.459755 | 1.1:-71118523 | MS.gene76046:CDS |
| ACAAATTCAGGCTGAGAAGT+TGG | 0.463771 | 1.1:-71117786 | MS.gene76046:CDS |
| AATTGTGCTTCCCGTGGTGA+GGG | 0.470364 | 1.1:-71118037 | MS.gene76046:CDS |
| TTTGCTCTTCTAACTGAACT+TGG | 0.476208 | 1.1:+71117813 | None:intergenic |
| AAAAGCTTAATGATATGTTA+GGG | 0.479717 | 1.1:-71118369 | MS.gene76046:CDS |
| TTCAATGACAGATTATGGTA+AGG | 0.481181 | 1.1:-71118734 | MS.gene76046:CDS |
| CTTCATCATGATCATCAAGC+TGG | 0.494557 | 1.1:+71118104 | None:intergenic |
| GCAGAGATTTAGCAAGCAAA+AGG | 0.497660 | 1.1:-71117738 | MS.gene76046:CDS |
| CAAGCAAAAGGACCGGGAGT+TGG | 0.497817 | 1.1:-71117726 | MS.gene76046:CDS |
| CGCCTTGGCAGCGTGTGAAG+TGG | 0.500864 | 1.1:-71118606 | MS.gene76046:CDS |
| TCACAAGGAGGAATGATTCA+AGG | 0.506693 | 1.1:-71118946 | MS.gene76046:CDS |
| TTATCTTTCCGAGAAAGAAA+AGG | 0.509656 | 1.1:-71118293 | MS.gene76046:CDS |
| GGCTTTAGAACTGAAGCAAA+AGG | 0.514387 | 1.1:-71117654 | MS.gene76046:CDS |
| GATGGCTTTCCACTCACAAT+GGG | 0.519217 | 1.1:-71118784 | MS.gene76046:CDS |
| AAAAGGGATCGTCGTCGCCT+TGG | 0.519575 | 1.1:-71118621 | MS.gene76046:CDS |
| AGGGTTGTCGCTACATTCAT+CGG | 0.521754 | 1.1:-71118812 | MS.gene76046:CDS |
| TCAATGACAGATTATGGTAA+GGG | 0.522539 | 1.1:-71118733 | MS.gene76046:CDS |
| GAAGCTTGAAAATGAACGTA+TGG | 0.528051 | 1.1:-71117675 | MS.gene76046:CDS |
| CAGCATGGTTACAGAAGCAA+TGG | 0.529621 | 1.1:-71117847 | MS.gene76046:CDS |
| CTTAATGATATGTTAGGGAG+GGG | 0.532863 | 1.1:-71118364 | MS.gene76046:CDS |
| GATTTAGCAAGCAAAAGGAC+CGG | 0.534224 | 1.1:-71117733 | MS.gene76046:CDS |
| ATTTAACCGCCCCTCACCAC+GGG | 0.535675 | 1.1:+71118027 | None:intergenic |
| GGACAAATGGGGCAGTCTGA+TGG | 0.540710 | 1.1:-71117899 | MS.gene76046:CDS |
| AAGTGGAAGAAGGAAATTTG+CGG | 0.541346 | 1.1:-71118506 | MS.gene76046:CDS |
| TTTAAAAGCATCGTGTTCAT+CGG | 0.543314 | 1.1:+71118063 | None:intergenic |
| AATGAGTCTCGGCTTTAACT+AGG | 0.543954 | 1.1:-71117630 | None:intergenic |
| GACTCAGCTTCTCCAACTCC+CGG | 0.544178 | 1.1:+71117714 | None:intergenic |
| TAAATTCCATCTAAAAGCGC+AGG | 0.553826 | 1.1:+71118316 | None:intergenic |
| GCTTAATGATATGTTAGGGA+GGG | 0.553961 | 1.1:-71118365 | MS.gene76046:CDS |
| AGAACTTCTGATGGTGTTGG+TGG | 0.554130 | 1.1:-71118529 | MS.gene76046:CDS |
| GGAATGATTCAAGGTGGTGT+TGG | 0.555541 | 1.1:-71118937 | MS.gene76046:CDS |
| ATTAGCTTGATGTTGGTGAA+TGG | 0.556372 | 1.1:+71118843 | None:intergenic |
| GACGCGGATTAGCTTGATGT+TGG | 0.561054 | 1.1:+71118836 | None:intergenic |
| CAATTGTGCTTCCCGTGGTG+AGG | 0.561935 | 1.1:-71118038 | MS.gene76046:CDS |
| TTCATCATGATCATCAAGCT+GGG | 0.564029 | 1.1:+71118105 | None:intergenic |
| CATCAAGCTAATCCGCGTCA+AGG | 0.564490 | 1.1:-71118832 | MS.gene76046:CDS |
| ATGATTCAAGGTGGTGTTGG+TGG | 0.565750 | 1.1:-71118934 | MS.gene76046:CDS |
| AGCTTAATGATATGTTAGGG+AGG | 0.573431 | 1.1:-71118366 | MS.gene76046:CDS |
| ATCAAGCTAATCCGCGTCAA+GGG | 0.574042 | 1.1:-71118831 | MS.gene76046:CDS |
| AGGGAGGGGAACTTCTTGTG+AGG | 0.575992 | 1.1:-71118350 | MS.gene76046:CDS |
| AAGCAAAAGGAAATGAGTCT+CGG | 0.578972 | 1.1:-71117641 | MS.gene76046:CDS |
| TGTCAAGATTATTTCAACAA+AGG | 0.579146 | 1.1:-71117935 | MS.gene76046:CDS |
| CTCTGATCACAGCTCTGCAA+AGG | 0.583764 | 1.1:+71118760 | None:intergenic |
| ATTTAGCAAGCAAAAGGACC+GGG | 0.584138 | 1.1:-71117732 | MS.gene76046:CDS |
| GTGCTTCCCGTGGTGAGGGG+CGG | 0.584219 | 1.1:-71118033 | MS.gene76046:CDS |
| GTCCACTTCACACGCTGCCA+AGG | 0.587195 | 1.1:+71118604 | None:intergenic |
| CTACATTCATCGGTGCAAGA+TGG | 0.587584 | 1.1:-71118802 | MS.gene76046:CDS |
| GTGTTGGTGGAAGTGGAAGA+AGG | 0.588046 | 1.1:-71118516 | MS.gene76046:CDS |
| AGATGGCTTTCCACTCACAA+TGG | 0.589107 | 1.1:-71118785 | MS.gene76046:CDS |
| TGATGTTGGTGAATGGTATG+AGG | 0.591910 | 1.1:+71118850 | None:intergenic |
| TGATGAACCTGAATTGATCC+AGG | 0.599004 | 1.1:+71118886 | None:intergenic |
| ATTGTGCTTCCCGTGGTGAG+GGG | 0.600048 | 1.1:-71118036 | MS.gene76046:CDS |
| GGTCAACAGGAAGGGAGTAG+AGG | 0.601547 | 1.1:-71118646 | MS.gene76046:CDS |
| TAGAGAAACAAAGATTCAAG+TGG | 0.601786 | 1.1:-71117760 | MS.gene76046:CDS |
| AAAGACAATTGTGCTTCCCG+TGG | 0.602217 | 1.1:-71118043 | MS.gene76046:CDS |
| TGCAAAGGTCCCATTGTGAG+TGG | 0.608379 | 1.1:+71118775 | None:intergenic |
| GATTATGGTAAGGGAGAAAG+GGG | 0.609744 | 1.1:-71118724 | MS.gene76046:CDS |
| AGCTGTTTCTTATATCGGTG+AGG | 0.609938 | 1.1:-71118554 | MS.gene76046:CDS |
| CATTTAACCGCCCCTCACCA+CGG | 0.615478 | 1.1:+71118026 | None:intergenic |
| AAACCATCCTCCATAAAACT+GGG | 0.618785 | 1.1:+71118673 | None:intergenic |
| CGTATCAGCGTGGACAAATG+GGG | 0.619035 | 1.1:-71117910 | MS.gene76046:CDS |
| GTTGGTGAATGGTATGAGGA+TGG | 0.620557 | 1.1:+71118854 | None:intergenic |
| GATTGCAATGCAGGATCATG+TGG | 0.628342 | 1.1:+71118187 | None:intergenic |
| GGTGAGGATAGAACTTCTGA+TGG | 0.630725 | 1.1:-71118538 | MS.gene76046:CDS |
| AGCATGGTTACAGAAGCAAT+GGG | 0.632029 | 1.1:-71117846 | MS.gene76046:CDS |
| TCGAAAGTCATGGCTGAAAG+AGG | 0.632554 | 1.1:-71118451 | MS.gene76046:CDS |
| GATAGAACTTCTGATGGTGT+TGG | 0.639977 | 1.1:-71118532 | MS.gene76046:CDS |
| AAGAAATTGAAACAAAACCA+AGG | 0.641410 | 1.1:-71117995 | MS.gene76046:CDS |
| TGTTTCGCCGCAGCAATGTG+AGG | 0.648167 | 1.1:-71118422 | MS.gene76046:CDS |
| AATTTATCCTCACATTGCTG+CGG | 0.655462 | 1.1:+71118415 | None:intergenic |
| CTGAAAACATGAGAGCAGCA+TGG | 0.667038 | 1.1:-71117862 | MS.gene76046:CDS |
| ATGGATGTGAATTTGTCACA+AGG | 0.679998 | 1.1:-71118961 | MS.gene76046:CDS |
| AACAAAGGCTCGTATCAGCG+TGG | 0.694218 | 1.1:-71117920 | MS.gene76046:CDS |
| TGTAGCGACAACCCTTGACG+CGG | 0.703142 | 1.1:+71118820 | None:intergenic |
| GATGTGAATTTGTCACAAGG+AGG | 0.706028 | 1.1:-71118958 | MS.gene76046:CDS |
| ATTATGGTAAGGGAGAAAGG+GGG | 0.719074 | 1.1:-71118723 | MS.gene76046:CDS |
| GAGATGTGTGTCGAAAGTCA+TGG | 0.729050 | 1.1:-71118461 | MS.gene76046:CDS |
| CAAGGAGGAATGATTCAAGG+TGG | 0.742066 | 1.1:-71118943 | MS.gene76046:CDS |
| AGTGGACTGATAATATGGTG+AGG | 0.762323 | 1.1:-71118588 | MS.gene76046:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCAATGATCTTAATAAA+AGG | - | chr1.1:71118196-71118215 | MS.gene76046:CDS | 15.0% |
| !! | AAAAAGCTTAATGATATGTT+AGG | - | chr1.1:71118222-71118241 | MS.gene76046:CDS | 20.0% |
| !! | AAAAGCTTAATGATATGTTA+GGG | - | chr1.1:71118223-71118242 | MS.gene76046:CDS | 20.0% |
| ! | AAGAAATTGAAACAAAACCA+AGG | - | chr1.1:71118597-71118616 | MS.gene76046:CDS | 25.0% |
| ! | AGTATTTCAATGACAGATTA+TGG | - | chr1.1:71117853-71117872 | MS.gene76046:CDS | 25.0% |
| ! | GTTCTTACCATAATTGTAAT+AGG | - | chr1.1:71118373-71118392 | MS.gene76046:CDS | 25.0% |
| ! | TGTCAAGATTATTTCAACAA+AGG | - | chr1.1:71118657-71118676 | MS.gene76046:CDS | 25.0% |
| !! | CAAAATCATGCTAATACTTT+TGG | - | chr1.1:71118621-71118640 | MS.gene76046:CDS | 25.0% |
| !!! | ATTACAGCTGTTTCTTATAT+CGG | - | chr1.1:71118033-71118052 | MS.gene76046:CDS | 25.0% |
| !!! | CAAAAGTATTAGCATGATTT+TGG | + | chr1.1:71118623-71118642 | None:intergenic | 25.0% |
| AATGCAGCCTATTACAATTA+TGG | + | chr1.1:71118383-71118402 | None:intergenic | 30.0% | |
| AGAGCAAAAGTTACAAATTC+AGG | - | chr1.1:71118794-71118813 | MS.gene76046:CDS | 30.0% | |
| TAGAGAAACAAAGATTCAAG+TGG | - | chr1.1:71118832-71118851 | MS.gene76046:CDS | 30.0% | |
| TATCATGATCATCCCTATTA+CGG | + | chr1.1:71118449-71118468 | None:intergenic | 30.0% | |
| TCAATGACAGATTATGGTAA+GGG | - | chr1.1:71117859-71117878 | MS.gene76046:CDS | 30.0% | |
| TTATCTTTCCGAGAAAGAAA+AGG | - | chr1.1:71118299-71118318 | MS.gene76046:CDS | 30.0% | |
| TTCAATGACAGATTATGGTA+AGG | - | chr1.1:71117858-71117877 | MS.gene76046:CDS | 30.0% | |
| !! | TTTAAAAGCATCGTGTTCAT+CGG | + | chr1.1:71118532-71118551 | None:intergenic | 30.0% |
| AAAACCATCCTCCATAAAAC+TGG | + | chr1.1:71117923-71117942 | None:intergenic | 35.0% | |
| AAACCATCCTCCATAAAACT+GGG | + | chr1.1:71117922-71117941 | None:intergenic | 35.0% | |
| AAGCAAAAGGAAATGAGTCT+CGG | - | chr1.1:71118951-71118970 | MS.gene76046:CDS | 35.0% | |
| AAGTGGAAGAAGGAAATTTG+CGG | - | chr1.1:71118086-71118105 | MS.gene76046:CDS | 35.0% | |
| AATTTATCCTCACATTGCTG+CGG | + | chr1.1:71118180-71118199 | None:intergenic | 35.0% | |
| AGATTATGGTAAGGGAGAAA+GGG | - | chr1.1:71117867-71117886 | MS.gene76046:CDS | 35.0% | |
| AGCTTAATGATATGTTAGGG+AGG | - | chr1.1:71118226-71118245 | MS.gene76046:CDS | 35.0% | |
| ATGGATGTGAATTTGTCACA+AGG | - | chr1.1:71117631-71117650 | MS.gene76046:CDS | 35.0% | |
| CTTAATGATATGTTAGGGAG+GGG | - | chr1.1:71118228-71118247 | MS.gene76046:CDS | 35.0% | |
| GAAGCTTGAAAATGAACGTA+TGG | - | chr1.1:71118917-71118936 | MS.gene76046:CDS | 35.0% | |
| GCTTAATGATATGTTAGGGA+GGG | - | chr1.1:71118227-71118246 | MS.gene76046:CDS | 35.0% | |
| TGATTTACCTGGATCAATTC+AGG | - | chr1.1:71117699-71117718 | MS.gene76046:CDS | 35.0% | |
| TTCATCATGATCATCAAGCT+GGG | + | chr1.1:71118490-71118509 | None:intergenic | 35.0% | |
| TTTGCTCTTCTAACTGAACT+TGG | + | chr1.1:71118782-71118801 | None:intergenic | 35.0% | |
| ! | AACTTCGTCCTTTTCTTTCT+CGG | + | chr1.1:71118310-71118329 | None:intergenic | 35.0% |
| ! | ATTAGCTTGATGTTGGTGAA+TGG | + | chr1.1:71117752-71117771 | None:intergenic | 35.0% |
| ! | TAAATTCCATCTAAAAGCGC+AGG | + | chr1.1:71118279-71118298 | None:intergenic | 35.0% |
| !! | TATTAGCATGATTTTGGCCT+TGG | + | chr1.1:71118617-71118636 | None:intergenic | 35.0% |
| !! | TGTGAAGTGGACTGATAATA+TGG | - | chr1.1:71117999-71118018 | MS.gene76046:CDS | 35.0% |
| !! | TTTGGTAGCTTTGATTTACC+TGG | - | chr1.1:71117688-71117707 | MS.gene76046:CDS | 35.0% |
| !!! | TTTATGGAGGATGGTTTTGA+TGG | - | chr1.1:71117925-71117944 | MS.gene76046:CDS | 35.0% |
| ACAAATTCAGGCTGAGAAGT+TGG | - | chr1.1:71118806-71118825 | MS.gene76046:CDS | 40.0% | |
| AGCATGGTTACAGAAGCAAT+GGG | - | chr1.1:71118746-71118765 | MS.gene76046:CDS | 40.0% | |
| ATTATGGTAAGGGAGAAAGG+GGG | - | chr1.1:71117869-71117888 | MS.gene76046:CDS | 40.0% | |
| ATTTAGCAAGCAAAAGGACC+GGG | - | chr1.1:71118860-71118879 | MS.gene76046:CDS | 40.0% | |
| CAGATTATGGTAAGGGAGAA+AGG | - | chr1.1:71117866-71117885 | MS.gene76046:CDS | 40.0% | |
| CTTCATCATGATCATCAAGC+TGG | + | chr1.1:71118491-71118510 | None:intergenic | 40.0% | |
| GAAGGGAGTAGAGGTAAAAA+GGG | - | chr1.1:71117955-71117974 | MS.gene76046:CDS | 40.0% | |
| GATGTGAATTTGTCACAAGG+AGG | - | chr1.1:71117634-71117653 | MS.gene76046:CDS | 40.0% | |
| GATTATGGTAAGGGAGAAAG+GGG | - | chr1.1:71117868-71117887 | MS.gene76046:CDS | 40.0% | |
| GATTTAGCAAGCAAAAGGAC+CGG | - | chr1.1:71118859-71118878 | MS.gene76046:CDS | 40.0% | |
| GCAGAGATTTAGCAAGCAAA+AGG | - | chr1.1:71118854-71118873 | MS.gene76046:CDS | 40.0% | |
| GGGGAAAAATTGTACAAGTG+AGG | - | chr1.1:71117888-71117907 | MS.gene76046:CDS | 40.0% | |
| TCACAAGGAGGAATGATTCA+AGG | - | chr1.1:71117646-71117665 | MS.gene76046:CDS | 40.0% | |
| TGATGAACCTGAATTGATCC+AGG | + | chr1.1:71117709-71117728 | None:intergenic | 40.0% | |
| TGCATTGAAGATTGCAATGC+AGG | + | chr1.1:71118417-71118436 | None:intergenic | 40.0% | |
| ! | ATTTGCGGTTTTGCAGAAGA+AGG | - | chr1.1:71118101-71118120 | MS.gene76046:CDS | 40.0% |
| ! | GAAAATCCTGCGCTTTTAGA+TGG | - | chr1.1:71118270-71118289 | MS.gene76046:CDS | 40.0% |
| ! | GATAGAACTTCTGATGGTGT+TGG | - | chr1.1:71118060-71118079 | MS.gene76046:CDS | 40.0% |
| ! | TGATGTTGGTGAATGGTATG+AGG | + | chr1.1:71117745-71117764 | None:intergenic | 40.0% |
| ! | TTTGCGGTTTTGCAGAAGAA+GGG | - | chr1.1:71118102-71118121 | MS.gene76046:CDS | 40.0% |
| ! | TTTTGCAGAAGAAGGGTAAG+TGG | - | chr1.1:71118109-71118128 | MS.gene76046:CDS | 40.0% |
| !! | AGCTGTTTCTTATATCGGTG+AGG | - | chr1.1:71118038-71118057 | MS.gene76046:CDS | 40.0% |
| !! | AGTGGACTGATAATATGGTG+AGG | - | chr1.1:71118004-71118023 | MS.gene76046:CDS | 40.0% |
| !! | GGCTTTAGAACTGAAGCAAA+AGG | - | chr1.1:71118938-71118957 | MS.gene76046:CDS | 40.0% |
| !! | GTTTTGATGGTCAACAGGAA+GGG | - | chr1.1:71117938-71117957 | MS.gene76046:CDS | 40.0% |
| !!! | GGTGTTGGTGGTAATTCTTT+TGG | - | chr1.1:71117670-71117689 | MS.gene76046:CDS | 40.0% |
| AAAGACAATTGTGCTTCCCG+TGG | - | chr1.1:71118549-71118568 | MS.gene76046:CDS | 45.0% | |
| AGATGGCTTTCCACTCACAA+TGG | - | chr1.1:71117807-71117826 | MS.gene76046:CDS | 45.0% | |
| AGGGTTGTCGCTACATTCAT+CGG | - | chr1.1:71117780-71117799 | MS.gene76046:CDS | 45.0% | |
| ATCAAGCTAATCCGCGTCAA+GGG | - | chr1.1:71117761-71117780 | MS.gene76046:CDS | 45.0% | |
| CAAGGAGGAATGATTCAAGG+TGG | - | chr1.1:71117649-71117668 | MS.gene76046:CDS | 45.0% | |
| CAGCATGGTTACAGAAGCAA+TGG | - | chr1.1:71118745-71118764 | MS.gene76046:CDS | 45.0% | |
| CTACATTCATCGGTGCAAGA+TGG | - | chr1.1:71117790-71117809 | MS.gene76046:CDS | 45.0% | |
| CTGAAAACATGAGAGCAGCA+TGG | - | chr1.1:71118730-71118749 | MS.gene76046:CDS | 45.0% | |
| GAGATGTGTGTCGAAAGTCA+TGG | - | chr1.1:71118131-71118150 | MS.gene76046:CDS | 45.0% | |
| GATGGCTTTCCACTCACAAT+GGG | - | chr1.1:71117808-71117827 | MS.gene76046:CDS | 45.0% | |
| GATTGCAATGCAGGATCATG+TGG | + | chr1.1:71118408-71118427 | None:intergenic | 45.0% | |
| GGAAGGGAGTAGAGGTAAAA+AGG | - | chr1.1:71117954-71117973 | MS.gene76046:CDS | 45.0% | |
| GGAATGATTCAAGGTGGTGT+TGG | - | chr1.1:71117655-71117674 | MS.gene76046:CDS | 45.0% | |
| GGTGAGGATAGAACTTCTGA+TGG | - | chr1.1:71118054-71118073 | MS.gene76046:CDS | 45.0% | |
| TCGAAAGTCATGGCTGAAAG+AGG | - | chr1.1:71118141-71118160 | MS.gene76046:CDS | 45.0% | |
| TCGTATCAGCGTGGACAAAT+GGG | - | chr1.1:71118681-71118700 | MS.gene76046:CDS | 45.0% | |
| ! | AGAACTTCTGATGGTGTTGG+TGG | - | chr1.1:71118063-71118082 | MS.gene76046:CDS | 45.0% |
| ! | ATGATTCAAGGTGGTGTTGG+TGG | - | chr1.1:71117658-71117677 | MS.gene76046:CDS | 45.0% |
| ! | CATGCTGCTCTCATGTTTTC+AGG | + | chr1.1:71118732-71118751 | None:intergenic | 45.0% |
| ! | GCAGTTAGCTCTCCGTAATA+GGG | - | chr1.1:71118434-71118453 | MS.gene76046:CDS | 45.0% |
| ! | GGAAGACGATCCCAGTTTTA+TGG | - | chr1.1:71117909-71117928 | MS.gene76046:CDS | 45.0% |
| ! | GTTGGTGAATGGTATGAGGA+TGG | + | chr1.1:71117741-71117760 | None:intergenic | 45.0% |
| ! | TGCAGTTAGCTCTCCGTAAT+AGG | - | chr1.1:71118433-71118452 | MS.gene76046:CDS | 45.0% |
| !! | AGACGATCCCAGTTTTATGG+AGG | - | chr1.1:71117912-71117931 | MS.gene76046:CDS | 45.0% |
| !! | GATCCCAGTTTTATGGAGGA+TGG | - | chr1.1:71117916-71117935 | MS.gene76046:CDS | 45.0% |
| !! | GGTTTTGATGGTCAACAGGA+AGG | - | chr1.1:71117937-71117956 | MS.gene76046:CDS | 45.0% |
| !!! | GGATGGTTTTGATGGTCAAC+AGG | - | chr1.1:71117933-71117952 | MS.gene76046:CDS | 45.0% |
| AACAAAGGCTCGTATCAGCG+TGG | - | chr1.1:71118672-71118691 | MS.gene76046:CDS | 50.0% | |
| AATTGTGCTTCCCGTGGTGA+GGG | - | chr1.1:71118555-71118574 | MS.gene76046:CDS | 50.0% | |
| CATCAAGCTAATCCGCGTCA+AGG | - | chr1.1:71117760-71117779 | MS.gene76046:CDS | 50.0% | |
| CGTATCAGCGTGGACAAATG+GGG | - | chr1.1:71118682-71118701 | MS.gene76046:CDS | 50.0% | |
| CTCGTATCAGCGTGGACAAA+TGG | - | chr1.1:71118680-71118699 | MS.gene76046:CDS | 50.0% | |
| CTCTGATCACAGCTCTGCAA+AGG | + | chr1.1:71117835-71117854 | None:intergenic | 50.0% | |
| GGGAACTTCTTGTGAGGTTG+TGG | - | chr1.1:71118248-71118267 | MS.gene76046:CDS | 50.0% | |
| TGCAAAGGTCCCATTGTGAG+TGG | + | chr1.1:71117820-71117839 | None:intergenic | 50.0% | |
| ! | GTGTTGGTGGAAGTGGAAGA+AGG | - | chr1.1:71118076-71118095 | MS.gene76046:CDS | 50.0% |
| !! | GACGCGGATTAGCTTGATGT+TGG | + | chr1.1:71117759-71117778 | None:intergenic | 50.0% |
| !! | TCTGATGGTGTTGGTGGAAG+TGG | - | chr1.1:71118069-71118088 | MS.gene76046:CDS | 50.0% |
| AAAAGGGATCGTCGTCGCCT+TGG | - | chr1.1:71117971-71117990 | MS.gene76046:CDS | 55.0% | |
| AGGGAGGGGAACTTCTTGTG+AGG | - | chr1.1:71118242-71118261 | MS.gene76046:CDS | 55.0% | |
| ATTGTGCTTCCCGTGGTGAG+GGG | - | chr1.1:71118556-71118575 | MS.gene76046:CDS | 55.0% | |
| ATTTAACCGCCCCTCACCAC+GGG | + | chr1.1:71118568-71118587 | None:intergenic | 55.0% | |
| CAAGCAAAAGGACCGGGAGT+TGG | - | chr1.1:71118866-71118885 | MS.gene76046:CDS | 55.0% | |
| CAATTGTGCTTCCCGTGGTG+AGG | - | chr1.1:71118554-71118573 | MS.gene76046:CDS | 55.0% | |
| CATTTAACCGCCCCTCACCA+CGG | + | chr1.1:71118569-71118588 | None:intergenic | 55.0% | |
| GACTCAGCTTCTCCAACTCC+CGG | + | chr1.1:71118881-71118900 | None:intergenic | 55.0% | |
| GGACAAATGGGGCAGTCTGA+TGG | - | chr1.1:71118693-71118712 | MS.gene76046:CDS | 55.0% | |
| GGTCAACAGGAAGGGAGTAG+AGG | - | chr1.1:71117946-71117965 | MS.gene76046:CDS | 55.0% | |
| TGTAGCGACAACCCTTGACG+CGG | + | chr1.1:71117775-71117794 | None:intergenic | 55.0% | |
| TGTTTCGCCGCAGCAATGTG+AGG | - | chr1.1:71118170-71118189 | MS.gene76046:CDS | 55.0% | |
| CGTGGTGAGGGGCGGTTAAA+TGG | - | chr1.1:71118567-71118586 | MS.gene76046:CDS | 60.0% | |
| GTCCACTTCACACGCTGCCA+AGG | + | chr1.1:71117991-71118010 | None:intergenic | 60.0% | |
| CGCCTTGGCAGCGTGTGAAG+TGG | - | chr1.1:71117986-71118005 | MS.gene76046:CDS | 65.0% | |
| GTGCTTCCCGTGGTGAGGGG+CGG | - | chr1.1:71118559-71118578 | MS.gene76046:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 71117631 | 71118983 | 71117631 | ID=MS.gene76046 |
| chr1.1 | mRNA | 71117631 | 71118983 | 71117631 | ID=MS.gene76046.t1;Parent=MS.gene76046 |
| chr1.1 | exon | 71117631 | 71118983 | 71117631 | ID=MS.gene76046.t1.exon1;Parent=MS.gene76046.t1 |
| chr1.1 | CDS | 71117631 | 71118983 | 71117631 | ID=cds.MS.gene76046.t1;Parent=MS.gene76046.t1 |
| Gene Sequence |
| Protein sequence |
