Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79919.t1 | RHN42406.1 | 97.4 | 344 | 8 | 1 | 1 | 344 | 1 | 343 | 3.00E-196 | 695.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79919.t1 | Q9FI94 | 84.6 | 338 | 51 | 1 | 8 | 344 | 2 | 339 | 1.4e-173 | 611.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79919.t1 | A0A396GMQ6 | 97.4 | 344 | 8 | 1 | 1 | 344 | 1 | 343 | 2.2e-196 | 695.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene79919.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene79919 | 0.80816 | 3.55E-50 | -1.69E-46 |
| MS.gene049159 | MS.gene79919 | 0.83528 | 1.84E-56 | -1.69E-46 |
| MS.gene049404 | MS.gene79919 | 0.809353 | 1.97E-50 | -1.69E-46 |
| MS.gene049435 | MS.gene79919 | 0.812147 | 4.91E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene79919 | 0.805798 | 1.12E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene79919 | 0.816913 | 4.33E-52 | -1.69E-46 |
| MS.gene050137 | MS.gene79919 | 0.803631 | 3.18E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene79919 | 0.826501 | 2.62E-54 | -1.69E-46 |
| MS.gene050442 | MS.gene79919 | 0.826174 | 3.14E-54 | -1.69E-46 |
| MS.gene050719 | MS.gene79919 | 0.818514 | 1.88E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene79919 | 0.810695 | 1.01E-50 | -1.69E-46 |
| MS.gene050724 | MS.gene79919 | 0.814716 | 1.34E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene79919 | 0.803031 | 4.23E-49 | -1.69E-46 |
| MS.gene050844 | MS.gene79919 | 0.824907 | 6.26E-54 | -1.69E-46 |
| MS.gene051247 | MS.gene79919 | 0.82024 | 7.62E-53 | -1.69E-46 |
| MS.gene05157 | MS.gene79919 | 0.807088 | 6.00E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene79919 | 0.830265 | 3.24E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene79919 | 0.802065 | 6.69E-49 | -1.69E-46 |
| MS.gene052012 | MS.gene79919 | 0.802254 | 6.12E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene79919 | 0.838336 | 3.06E-57 | -1.69E-46 |
| MS.gene052190 | MS.gene79919 | 0.809226 | 2.10E-50 | -1.69E-46 |
| MS.gene052323 | MS.gene79919 | 0.822727 | 2.03E-53 | -1.69E-46 |
| MS.gene052611 | MS.gene79919 | 0.838808 | 2.31E-57 | -1.69E-46 |
| MS.gene052612 | MS.gene79919 | 0.80505 | 1.61E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene79919 | 0.813902 | 2.02E-51 | -1.69E-46 |
| MS.gene052773 | MS.gene79919 | 0.808897 | 2.47E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene79919 | 0.804143 | 2.49E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene79919 | 0.819619 | 1.06E-52 | -1.69E-46 |
| MS.gene053008 | MS.gene79919 | 0.811724 | 6.07E-51 | -1.69E-46 |
| MS.gene053221 | MS.gene79919 | 0.809011 | 2.34E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene79919 | 0.837865 | 4.04E-57 | -1.69E-46 |
| MS.gene054467 | MS.gene79919 | 0.821892 | 3.17E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene79919 | 0.814761 | 1.31E-51 | -1.69E-46 |
| MS.gene054775 | MS.gene79919 | 0.80019 | 1.62E-48 | -1.69E-46 |
| MS.gene055357 | MS.gene79919 | 0.815992 | 6.96E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene79919 | 0.808168 | 3.54E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene79919 | 0.813193 | 2.90E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene79919 | 0.816307 | 5.92E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene79919 | 0.80304 | 4.21E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene79919 | 0.817399 | 3.37E-52 | -1.69E-46 |
| MS.gene05604 | MS.gene79919 | 0.81702 | 4.09E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene79919 | 0.813172 | 2.93E-51 | -1.69E-46 |
| MS.gene056173 | MS.gene79919 | 0.840622 | 7.78E-58 | -1.69E-46 |
| MS.gene056553 | MS.gene79919 | 0.808803 | 2.59E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene79919 | 0.823098 | 1.66E-53 | -1.69E-46 |
| MS.gene057693 | MS.gene79919 | 0.811095 | 8.31E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene79919 | 0.829029 | 6.47E-55 | -1.69E-46 |
| MS.gene058625 | MS.gene79919 | 0.829841 | 4.11E-55 | -1.69E-46 |
| MS.gene058636 | MS.gene79919 | 0.818575 | 1.82E-52 | -1.69E-46 |
| MS.gene058829 | MS.gene79919 | 0.812356 | 4.42E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene79919 | 0.826871 | 2.14E-54 | -1.69E-46 |
| MS.gene059331 | MS.gene79919 | 0.809591 | 1.75E-50 | -1.69E-46 |
| MS.gene059725 | MS.gene79919 | 0.832909 | 7.22E-56 | -1.69E-46 |
| MS.gene059937 | MS.gene79919 | 0.80293 | 4.44E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene79919 | 0.806912 | 6.53E-50 | -1.69E-46 |
| MS.gene060637 | MS.gene79919 | 0.803983 | 2.69E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene79919 | 0.822219 | 2.66E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79919.t1 | MTR_3g084750 | 90.515 | 369 | 19 | 3 | 343 | 709 | 57 | 411 | 0.0 | 658 |
| MS.gene79919.t1 | MTR_3g084750 | 90.515 | 369 | 19 | 3 | 343 | 709 | 5 | 359 | 0.0 | 657 |
| MS.gene79919.t1 | MTR_1g015930 | 46.185 | 249 | 130 | 3 | 382 | 630 | 50 | 294 | 2.49e-60 | 207 |
| MS.gene79919.t1 | MTR_1g019050 | 33.203 | 256 | 138 | 8 | 375 | 622 | 43 | 273 | 6.42e-26 | 109 |
| MS.gene79919.t1 | MTR_8g079080 | 78.049 | 41 | 3 | 1 | 231 | 265 | 45 | 85 | 1.85e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79919.t1 | AT5G05920 | 84.615 | 338 | 51 | 1 | 8 | 344 | 2 | 339 | 0.0 | 616 |
| MS.gene79919.t1 | AT5G05920 | 91.667 | 216 | 18 | 0 | 129 | 344 | 6 | 221 | 2.72e-147 | 429 |
| MS.gene79919.t1 | AT4G12240 | 56.977 | 344 | 126 | 5 | 376 | 709 | 30 | 361 | 1.12e-130 | 391 |
| MS.gene79919.t1 | AT5G05920 | 92.053 | 151 | 12 | 0 | 194 | 344 | 1 | 151 | 1.38e-98 | 301 |
| MS.gene79919.t1 | AT5G52010 | 46.400 | 250 | 128 | 4 | 380 | 629 | 71 | 314 | 2.16e-60 | 208 |
Find 168 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGCTATTCTGAGCTTAT+TGG | 0.177466 | 3.1:-65052291 | None:intergenic |
| AGCTGAAACGGGCAGGGTTT+TGG | 0.228799 | 3.1:+65052687 | MS.gene79919:CDS |
| GAATTTGATGGAAGTGATTC+TGG | 0.236275 | 3.1:+65049849 | MS.gene79919:CDS |
| GAATCGAATCGGTAATTTAT+TGG | 0.240496 | 3.1:+65047396 | MS.gene79919:CDS |
| TATGTAGAGTAGGGCTGTTC+TGG | 0.246065 | 3.1:+65052222 | MS.gene79919:CDS |
| AGAATAGCTGCAGCTTCTTT+TGG | 0.246225 | 3.1:+65052302 | MS.gene79919:CDS |
| TGTCTCAAGACTGTTGTTAT+TGG | 0.251511 | 3.1:+65052860 | MS.gene79919:CDS |
| CCACAATCAGACCAGGGTTT+TGG | 0.262442 | 3.1:-65049573 | None:intergenic |
| TTGGCAATACAACAGATATA+AGG | 0.272646 | 3.1:+65049682 | MS.gene79919:intron |
| ATGAAAACTCCTACCTTTAC+TGG | 0.273857 | 3.1:+65049237 | MS.gene79919:CDS |
| ACTTCTAATCTTATCTCTTC+TGG | 0.277640 | 3.1:+65046414 | MS.gene79919:CDS |
| GTCTCAAGACTGTTGTTATT+GGG | 0.278322 | 3.1:+65052861 | MS.gene79919:CDS |
| AATTTGCAATAGTTGTCATT+AGG | 0.299937 | 3.1:-65047421 | None:intergenic |
| AGGGAGTAGAAAGGTGAAAT+TGG | 0.313386 | 3.1:+65052577 | MS.gene79919:CDS |
| TGAGACGACACTGTCATTCT+TGG | 0.314624 | 3.1:+65052159 | MS.gene79919:CDS |
| ATGTACAGCTTCACCATTCA+TGG | 0.318700 | 3.1:-65049706 | None:intergenic |
| GAGACGACACTGTCATTCTT+GGG | 0.319372 | 3.1:+65052160 | MS.gene79919:CDS |
| GGGTAAGTATGCTATGAAAA+TGG | 0.326589 | 3.1:+65052601 | MS.gene79919:CDS |
| ATTTGCAATAGTTGTCATTA+GGG | 0.327811 | 3.1:-65047420 | None:intergenic |
| TTCATAAGGTGGGATTGAAT+TGG | 0.333130 | 3.1:-65052264 | None:intergenic |
| CATTTGATTAACGACTTTAA+CGG | 0.349642 | 3.1:-65046192 | None:intergenic |
| TCATAGGCGGGTTGAGTGTT+TGG | 0.351038 | 3.1:+65052781 | MS.gene79919:CDS |
| GTTAATCCTGGACAATAAAC+TGG | 0.352135 | 3.1:-65049511 | None:intergenic |
| TGAAATCATAACCCTCGATT+TGG | 0.358260 | 3.1:-65046094 | None:intergenic |
| TGCCTTGCGCCAACATATAA+AGG | 0.358724 | 3.1:+65047331 | MS.gene79919:CDS |
| AATACTGCACAAGAATTTGA+TGG | 0.361085 | 3.1:+65049837 | MS.gene79919:CDS |
| AGCTTATTGGCAACTTCATA+AGG | 0.365446 | 3.1:-65052278 | None:intergenic |
| ACAGGAACTGTTGTATCGTT+TGG | 0.373770 | 3.1:+65052406 | MS.gene79919:CDS |
| CTGTATCGGTTGTGGAAAAC+TGG | 0.377175 | 3.1:+65052972 | MS.gene79919:CDS |
| GTTGTATCGTTTGGAGGATA+AGG | 0.381598 | 3.1:+65052415 | MS.gene79919:CDS |
| CTCATGTTTGTCGTGTTTGT+GGG | 0.391232 | 3.1:+65052459 | MS.gene79919:CDS |
| TGCACCATTGCGCATCATAT+TGG | 0.397312 | 3.1:-65049796 | None:intergenic |
| GGGTTCAAACTGTGTTAGAT+AGG | 0.398462 | 3.1:+65052708 | MS.gene79919:CDS |
| CCCCATGAAACAGCCTCATC+TGG | 0.399289 | 3.1:-65049879 | None:intergenic |
| AGGATTAACTGATGGCTCAT+TGG | 0.401238 | 3.1:+65049525 | MS.gene79919:CDS |
| GTCCAGATGAGGCTGTTTCA+TGG | 0.409575 | 3.1:+65049877 | MS.gene79919:CDS |
| CTCAAATCAATGCTCACAAC+TGG | 0.413436 | 3.1:+65046143 | MS.gene79919:CDS |
| CCTCATGTTTGTCGTGTTTG+TGG | 0.413883 | 3.1:+65052458 | MS.gene79919:CDS |
| AAAGGAGATTTCTCTTTGCC+TGG | 0.415853 | 3.1:+65047349 | MS.gene79919:CDS |
| TGACAACTATTGCAAATTTG+AGG | 0.416421 | 3.1:+65047426 | MS.gene79919:CDS |
| GCCAAACCATACCCAACTTT+AGG | 0.418960 | 3.1:-65052659 | None:intergenic |
| TGGCAATACAACAGATATAA+GGG | 0.421254 | 3.1:+65049683 | MS.gene79919:intron |
| TCCTAAAGTTGGGTATGGTT+TGG | 0.425982 | 3.1:+65052658 | MS.gene79919:CDS |
| TCATCACAATCCTCATCAAT+AGG | 0.426415 | 3.1:-65046333 | None:intergenic |
| GCGTTGCAAATGTGATGTTT+TGG | 0.427804 | 3.1:-65049774 | None:intergenic |
| TTGACTCCTAAAGTTGGGTA+TGG | 0.429889 | 3.1:+65052653 | MS.gene79919:CDS |
| GGATTAACTGATGGCTCATT+GGG | 0.432714 | 3.1:+65049526 | MS.gene79919:CDS |
| CGTTAAAGTCGTTAATCAAA+TGG | 0.440345 | 3.1:+65046193 | MS.gene79919:CDS |
| ATAAGAAGGATTTGGTGTAT+AGG | 0.440396 | 3.1:+65046358 | MS.gene79919:CDS |
| TCATAAGGTGGGATTGAATT+GGG | 0.443856 | 3.1:-65052263 | None:intergenic |
| AATATTCCAGTTTATTGTCC+AGG | 0.444941 | 3.1:+65049505 | MS.gene79919:CDS |
| TCCAGATGAGGCTGTTTCAT+GGG | 0.445073 | 3.1:+65049878 | MS.gene79919:CDS |
| CATGTAGTTGTTACAACTAC+AGG | 0.448520 | 3.1:+65047283 | MS.gene79919:CDS |
| AGGATCTGCTAAAACTGTTA+AGG | 0.452905 | 3.1:+65049911 | MS.gene79919:CDS |
| TTTGATGGGGAAGGCGAAGA+AGG | 0.453176 | 3.1:+65052946 | MS.gene79919:CDS |
| ATCCAAGTTAATAGCTCGAT+TGG | 0.455505 | 3.1:+65049199 | MS.gene79919:CDS |
| TGATGAAGATAAGAAGGATT+TGG | 0.455823 | 3.1:+65046350 | MS.gene79919:CDS |
| GGGTTGCGTTGAAGCTAGAT+TGG | 0.456974 | 3.1:+65046295 | MS.gene79919:intron |
| GATGCAGTTCCTAAAACATC+TGG | 0.457052 | 3.1:+65053070 | MS.gene79919:CDS |
| AAATTAGACTCCGATGATAA+TGG | 0.457209 | 3.1:+65053163 | MS.gene79919:CDS |
| CTACCTTTACTGGGCATACA+AGG | 0.457425 | 3.1:+65049247 | MS.gene79919:CDS |
| TTGTATCGTTTGGAGGATAA+GGG | 0.462961 | 3.1:+65052416 | MS.gene79919:CDS |
| GCTGATGAGCTGAAACGGGC+AGG | 0.464292 | 3.1:+65052680 | MS.gene79919:CDS |
| TCAAATGTTGAAGGAGCAAA+AGG | 0.465723 | 3.1:+65047471 | MS.gene79919:CDS |
| TTTAACGGCATCACCAAAGT+TGG | 0.472768 | 3.1:-65046177 | None:intergenic |
| TGGTGGATATGATGGATCAT+AGG | 0.472905 | 3.1:+65052765 | MS.gene79919:CDS |
| TCGTGATATATTGAAAAGAT+TGG | 0.474466 | 3.1:+65053000 | MS.gene79919:CDS |
| GGAGCTTATCTTCGCTCAAA+AGG | 0.483770 | 3.1:+65047370 | MS.gene79919:CDS |
| TCCCAATCGAGCTATTAACT+TGG | 0.489104 | 3.1:-65049201 | None:intergenic |
| TGAGTGTTTGGTTCTTGTAT+CGG | 0.489683 | 3.1:+65052793 | MS.gene79919:CDS |
| GAGAAATCTCCTTTATATGT+TGG | 0.490219 | 3.1:-65047340 | None:intergenic |
| TCTCAAGACTGTTGTTATTG+GGG | 0.494985 | 3.1:+65052862 | MS.gene79919:CDS |
| ACTATTGCAAATTTGAGGAC+TGG | 0.495960 | 3.1:+65047431 | MS.gene79919:CDS |
| TATTGCATTGCAAAAGCATA+TGG | 0.499781 | 3.1:+65052745 | MS.gene79919:CDS |
| ATAATCATGCCTGTCTTGCT+AGG | 0.505038 | 3.1:-65049735 | None:intergenic |
| CACTGTCATTCTTGGGGTCA+CGG | 0.505218 | 3.1:+65052167 | MS.gene79919:CDS |
| ACTCTACATAGCTTCTCATT+CGG | 0.506498 | 3.1:-65052209 | None:intergenic |
| GTTGAAGGAGCAAAAGGAAG+AGG | 0.511154 | 3.1:+65047477 | MS.gene79919:CDS |
| GAAGGAGGCTGTATCGGTTG+TGG | 0.514904 | 3.1:+65052964 | MS.gene79919:CDS |
| CATGCAAGTCCTAGCAAGAC+AGG | 0.515398 | 3.1:+65049726 | MS.gene79919:CDS |
| GCAGTGATGGAGTCTTGAAA+AGG | 0.516098 | 3.1:+65052891 | MS.gene79919:CDS |
| TCCAAGTTAATAGCTCGATT+GGG | 0.518058 | 3.1:+65049200 | MS.gene79919:CDS |
| ATGTAGAGTAGGGCTGTTCT+GGG | 0.518539 | 3.1:+65052223 | MS.gene79919:CDS |
| GTTTGGCTGATGAGCTGAAA+CGG | 0.521781 | 3.1:+65052675 | MS.gene79919:CDS |
| GGCGAAGAAGGAGGCTGTAT+CGG | 0.522314 | 3.1:+65052958 | MS.gene79919:CDS |
| AAAGCATATGGTGGATATGA+TGG | 0.523680 | 3.1:+65052757 | MS.gene79919:CDS |
| GTCATTCTTGGGGTCACGGA+AGG | 0.525218 | 3.1:+65052171 | MS.gene79919:CDS |
| CCAAAACCCTGGTCTGATTG+TGG | 0.527845 | 3.1:+65049573 | MS.gene79919:CDS |
| TCAAAAGGATTGAATCGAAT+CGG | 0.532537 | 3.1:+65047385 | MS.gene79919:CDS |
| GGAACTGTTGTATCGTTTGG+AGG | 0.537669 | 3.1:+65052409 | MS.gene79919:CDS |
| AATCGAGCTATTAACTTGGA+TGG | 0.538542 | 3.1:-65049197 | None:intergenic |
| GAAAATGGAAAAGTATAAGA+AGG | 0.542297 | 3.1:+65052616 | MS.gene79919:CDS |
| AATGAGCCATCAGTTAATCC+TGG | 0.542845 | 3.1:-65049523 | None:intergenic |
| TCGTGAGAGGAGGAAAGAAC+AGG | 0.542932 | 3.1:+65052388 | MS.gene79919:CDS |
| TTCCATTCCTTCCAAAACCC+TGG | 0.545098 | 3.1:+65049562 | MS.gene79919:CDS |
| CTCCTCTCACGAACAACGTG+GGG | 0.546733 | 3.1:-65052377 | None:intergenic |
| CTCCTTTATATGTTGGCGCA+AGG | 0.549124 | 3.1:-65047333 | None:intergenic |
| AATGAGAAGCTATGTAGAGT+AGG | 0.549536 | 3.1:+65052212 | MS.gene79919:CDS |
| GGATTGTGATGAAGATAAGA+AGG | 0.551599 | 3.1:+65046344 | MS.gene79919:CDS |
| AAGGCGGAATCAGATAGAAT+CGG | 0.553848 | 3.1:+65052550 | MS.gene79919:CDS |
| TATTGGCAACTTCATAAGGT+GGG | 0.553988 | 3.1:-65052274 | None:intergenic |
| CTATTGTGTAGAATATTCTA+CGG | 0.555084 | 3.1:-65052106 | None:intergenic |
| TTTGGCTGATGAGCTGAAAC+GGG | 0.555204 | 3.1:+65052676 | MS.gene79919:CDS |
| ACAAGGATGACAGAGGTCCT+TGG | 0.556458 | 3.1:+65053137 | MS.gene79919:CDS |
| TATTGTCCAGGATTAACTGA+TGG | 0.556513 | 3.1:+65049517 | MS.gene79919:CDS |
| TTGCCTTGTATGCCCAGTAA+AGG | 0.557308 | 3.1:-65049250 | None:intergenic |
| AAAGAATCTGAAAACCTCGC+AGG | 0.559309 | 3.1:+65046062 | MS.gene79919:CDS |
| TGGAGTTGTTCGACATATGG+TGG | 0.559762 | 3.1:+65052322 | MS.gene79919:CDS |
| ATGAGAAGCTATGTAGAGTA+GGG | 0.561703 | 3.1:+65052213 | MS.gene79919:CDS |
| TTTGAGCGAAGATAAGCTCC+AGG | 0.562914 | 3.1:-65047367 | None:intergenic |
| CTGATGAGCTGAAACGGGCA+GGG | 0.566688 | 3.1:+65052681 | MS.gene79919:CDS |
| ATCGGCTAGAGGGAGTAGAA+AGG | 0.569230 | 3.1:+65052568 | MS.gene79919:CDS |
| TTGCGTTGAAGCTAGATTGG+AGG | 0.571247 | 3.1:+65046298 | MS.gene79919:intron |
| GGATATGATGGATCATAGGC+GGG | 0.572337 | 3.1:+65052769 | MS.gene79919:CDS |
| GAGTAGAAAGGTGAAATTGG+TGG | 0.573655 | 3.1:+65052580 | MS.gene79919:CDS |
| ATCAGATAGAATCGGCTAGA+GGG | 0.575206 | 3.1:+65052558 | MS.gene79919:CDS |
| TTCAGATTCTTTGAAGACTG+TGG | 0.575222 | 3.1:-65046051 | None:intergenic |
| CCAGATGAGGCTGTTTCATG+GGG | 0.576966 | 3.1:+65049879 | MS.gene79919:CDS |
| ATTTGCAACACCATTATCAT+CGG | 0.578456 | 3.1:-65053173 | None:intergenic |
| ATGAGCGTGAGCATGCGAAA+AGG | 0.580807 | 3.1:+65052531 | MS.gene79919:CDS |
| ACAGATATAAGGGCCATGAA+TGG | 0.581048 | 3.1:+65049693 | MS.gene79919:intron |
| CTTGTATGCCCAGTAAAGGT+AGG | 0.581698 | 3.1:-65049246 | None:intergenic |
| TGAAAACTCCTACCTTTACT+GGG | 0.585821 | 3.1:+65049238 | MS.gene79919:CDS |
| TTCTGGAGCTCGTCCAGATG+AGG | 0.586670 | 3.1:+65049866 | MS.gene79919:CDS |
| TAAGGTGGGATTGAATTGGG+TGG | 0.598304 | 3.1:-65052260 | None:intergenic |
| TCCTCCTCTCACGAACAACG+TGG | 0.601028 | 3.1:-65052379 | None:intergenic |
| TTACCTTTGTCAGCATCACA+TGG | 0.601287 | 3.1:+65046455 | MS.gene79919:CDS |
| AACAAATGTTTGAATGCCAG+TGG | 0.602266 | 3.1:-65052132 | None:intergenic |
| AGAATGACAGTGTCGTCTCA+AGG | 0.604787 | 3.1:-65052156 | None:intergenic |
| CCCACGTTGTTCGTGAGAGG+AGG | 0.604916 | 3.1:+65052378 | MS.gene79919:CDS |
| AATGCAATATCCGCAGCTTG+CGG | 0.606975 | 3.1:-65052731 | None:intergenic |
| AGACGACACTGTCATTCTTG+GGG | 0.607766 | 3.1:+65052161 | MS.gene79919:CDS |
| AGTAGAAAGGTGAAATTGGT+GGG | 0.609374 | 3.1:+65052581 | MS.gene79919:CDS |
| TGCATTGCAAAAGCATATGG+TGG | 0.610349 | 3.1:+65052748 | MS.gene79919:CDS |
| TTCTACACAATAGAAGCCAC+TGG | 0.610989 | 3.1:+65052116 | MS.gene79919:CDS |
| GTGGACATATAACCCAGAAG+TGG | 0.612100 | 3.1:+65053024 | MS.gene79919:CDS |
| TTATTGGCAACTTCATAAGG+TGG | 0.612373 | 3.1:-65052275 | None:intergenic |
| CCTCCTCTCACGAACAACGT+GGG | 0.620111 | 3.1:-65052378 | None:intergenic |
| AGGAAAGTGTCTCCAAATCG+AGG | 0.620843 | 3.1:+65046082 | MS.gene79919:CDS |
| GATGGGGAAGGCGAAGAAGG+AGG | 0.621967 | 3.1:+65052949 | MS.gene79919:CDS |
| AATCAGATAGAATCGGCTAG+AGG | 0.623094 | 3.1:+65052557 | MS.gene79919:CDS |
| ATGTTTGTCGTGTTTGTGGG+AGG | 0.623967 | 3.1:+65052462 | MS.gene79919:CDS |
| GGTTGATGAACCTATTGATG+AGG | 0.625189 | 3.1:+65046323 | MS.gene79919:CDS |
| AGCGTGAGCATGCGAAAAGG+CGG | 0.626856 | 3.1:+65052534 | MS.gene79919:CDS |
| ACTATGTCCACAATCAGACC+AGG | 0.627546 | 3.1:-65049580 | None:intergenic |
| AGGATGACAGAGGTCCTTGG+TGG | 0.631079 | 3.1:+65053140 | MS.gene79919:CDS |
| GTTAGATAGGCCGCAAGCTG+CGG | 0.632475 | 3.1:+65052721 | MS.gene79919:CDS |
| GTTGAAGCTAGATTGGAGGT+TGG | 0.633831 | 3.1:+65046302 | MS.gene79919:intron |
| TCATATTGATGATGACTACA+AGG | 0.634259 | 3.1:+65053120 | MS.gene79919:CDS |
| TTATGAAGGAAGCAAAGCTA+CGG | 0.640003 | 3.1:+65052837 | MS.gene79919:CDS |
| GGAAAGTGTCTCCAAATCGA+GGG | 0.640745 | 3.1:+65046083 | MS.gene79919:CDS |
| GAGGGTTATGATTTCAACCG+TGG | 0.648518 | 3.1:+65046101 | MS.gene79919:CDS |
| AACGCCAATATGATGCGCAA+TGG | 0.648917 | 3.1:+65049792 | MS.gene79919:CDS |
| TGGATATGATGGATCATAGG+CGG | 0.652070 | 3.1:+65052768 | MS.gene79919:CDS |
| GCTGTTGATAATCGACGCCA+CGG | 0.656868 | 3.1:-65046118 | None:intergenic |
| ATATATTGAAAAGATTGGAG+TGG | 0.659405 | 3.1:+65053005 | MS.gene79919:CDS |
| CCACAAACACGACAAACATG+AGG | 0.661362 | 3.1:-65052458 | None:intergenic |
| TTTGGAGACACTTTCCTGCG+AGG | 0.661904 | 3.1:-65046076 | None:intergenic |
| CTGATTGTGGACATAGTGCA+AGG | 0.662154 | 3.1:+65049586 | MS.gene79919:CDS |
| TCACCATGTGATGCTGACAA+AGG | 0.672957 | 3.1:-65046458 | None:intergenic |
| GAAGACTGTGGAGTGAACTG+AGG | 0.694757 | 3.1:-65046039 | None:intergenic |
| TCCTCTCACGAACAACGTGG+GGG | 0.698129 | 3.1:-65052376 | None:intergenic |
| TCGGAGTCTAATTTCCACCA+AGG | 0.709650 | 3.1:-65053154 | None:intergenic |
| GTAGTTGTTACAACTACAGG+TGG | 0.721014 | 3.1:+65047286 | MS.gene79919:CDS |
| CTATGTCCACAATCAGACCA+GGG | 0.729813 | 3.1:-65049579 | None:intergenic |
| GATGACTACAAGGATGACAG+AGG | 0.730694 | 3.1:+65053130 | MS.gene79919:CDS |
| GCGCAATGGTGCAGACTATG+CGG | 0.731569 | 3.1:+65049806 | MS.gene79919:CDS |
| CAGATGAGGCTGTTTCATGG+GGG | 0.740121 | 3.1:+65049880 | MS.gene79919:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 65045999 | 65053201 | 65045999 | ID=MS.gene79919 |
| chr3.1 | mRNA | 65045999 | 65053201 | 65045999 | ID=MS.gene79919.t1;Parent=MS.gene79919 |
| chr3.1 | exon | 65045999 | 65046214 | 65045999 | ID=MS.gene79919.t1.exon1;Parent=MS.gene79919.t1 |
| chr3.1 | CDS | 65045999 | 65046214 | 65045999 | ID=cds.MS.gene79919.t1;Parent=MS.gene79919.t1 |
| chr3.1 | exon | 65046309 | 65046476 | 65046309 | ID=MS.gene79919.t1.exon2;Parent=MS.gene79919.t1 |
| chr3.1 | CDS | 65046309 | 65046476 | 65046309 | ID=cds.MS.gene79919.t1;Parent=MS.gene79919.t1 |
| chr3.1 | exon | 65047280 | 65047498 | 65047280 | ID=MS.gene79919.t1.exon3;Parent=MS.gene79919.t1 |
| chr3.1 | CDS | 65047280 | 65047498 | 65047280 | ID=cds.MS.gene79919.t1;Parent=MS.gene79919.t1 |
| chr3.1 | exon | 65049182 | 65049268 | 65049182 | ID=MS.gene79919.t1.exon4;Parent=MS.gene79919.t1 |
| chr3.1 | CDS | 65049182 | 65049268 | 65049182 | ID=cds.MS.gene79919.t1;Parent=MS.gene79919.t1 |
| chr3.1 | exon | 65049502 | 65049607 | 65049502 | ID=MS.gene79919.t1.exon5;Parent=MS.gene79919.t1 |
| chr3.1 | CDS | 65049502 | 65049607 | 65049502 | ID=cds.MS.gene79919.t1;Parent=MS.gene79919.t1 |
| chr3.1 | exon | 65049697 | 65049932 | 65049697 | ID=MS.gene79919.t1.exon6;Parent=MS.gene79919.t1 |
| chr3.1 | CDS | 65049697 | 65049932 | 65049697 | ID=cds.MS.gene79919.t1;Parent=MS.gene79919.t1 |
| chr3.1 | exon | 65052104 | 65053201 | 65052104 | ID=MS.gene79919.t1.exon7;Parent=MS.gene79919.t1 |
| chr3.1 | CDS | 65052104 | 65053201 | 65052104 | ID=cds.MS.gene79919.t1;Parent=MS.gene79919.t1 |
| Gene Sequence |
| Protein sequence |
