Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80574.t1 | XP_003609141.2 | 97.3 | 901 | 23 | 1 | 1 | 901 | 1 | 900 | 0.00E+00 | 1704.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80574.t1 | Q8GXN9 | 59.2 | 826 | 307 | 9 | 1 | 816 | 1 | 806 | 2.8e-257 | 889.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80574.t1 | G7JT16 | 97.3 | 901 | 23 | 1 | 1 | 901 | 1 | 900 | 0.0e+00 | 1704.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene80574 | 0.84365 | 1.23E-58 | -1.69E-46 |
| MS.gene049159 | MS.gene80574 | 0.813315 | 2.72E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene80574 | 0.812316 | 4.51E-51 | -1.69E-46 |
| MS.gene049435 | MS.gene80574 | 0.806819 | 6.83E-50 | -1.69E-46 |
| MS.gene050348 | MS.gene80574 | 0.829176 | 5.96E-55 | -1.69E-46 |
| MS.gene050361 | MS.gene80574 | 0.820268 | 7.50E-53 | -1.69E-46 |
| MS.gene050551 | MS.gene80574 | 0.844977 | 5.41E-59 | -1.69E-46 |
| MS.gene050654 | MS.gene80574 | 0.829629 | 4.62E-55 | -1.69E-46 |
| MS.gene050759 | MS.gene80574 | 0.805502 | 1.29E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene80574 | 0.829844 | 4.10E-55 | -1.69E-46 |
| MS.gene051209 | MS.gene80574 | 0.825087 | 5.68E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene80574 | 0.806246 | 9.03E-50 | -1.69E-46 |
| MS.gene051381 | MS.gene80574 | 0.812312 | 4.52E-51 | -1.69E-46 |
| MS.gene051800 | MS.gene80574 | 0.855748 | 5.12E-62 | -1.69E-46 |
| MS.gene052307 | MS.gene80574 | 0.805309 | 1.42E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene80574 | 0.810702 | 1.01E-50 | -1.69E-46 |
| MS.gene052514 | MS.gene80574 | 0.822575 | 2.20E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene80574 | 0.813342 | 2.69E-51 | -1.69E-46 |
| MS.gene052609 | MS.gene80574 | 0.848249 | 6.91E-60 | -1.69E-46 |
| MS.gene052674 | MS.gene80574 | 0.800947 | 1.13E-48 | -1.69E-46 |
| MS.gene052675 | MS.gene80574 | 0.807973 | 3.89E-50 | -1.69E-46 |
| MS.gene052677 | MS.gene80574 | 0.814803 | 1.28E-51 | -1.69E-46 |
| MS.gene052775 | MS.gene80574 | 0.831097 | 2.03E-55 | -1.69E-46 |
| MS.gene052776 | MS.gene80574 | 0.856861 | 2.42E-62 | -1.69E-46 |
| MS.gene052994 | MS.gene80574 | 0.810444 | 1.15E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene80574 | 0.827305 | 1.68E-54 | -1.69E-46 |
| MS.gene05315 | MS.gene80574 | 0.816617 | 5.04E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene80574 | 0.80507 | 1.59E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene80574 | 0.81122 | 7.81E-51 | -1.69E-46 |
| MS.gene05458 | MS.gene80574 | 0.804638 | 1.96E-49 | -1.69E-46 |
| MS.gene055310 | MS.gene80574 | 0.805718 | 1.17E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene80574 | 0.815672 | 8.20E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene80574 | 0.817503 | 3.19E-52 | -1.69E-46 |
| MS.gene055864 | MS.gene80574 | 0.808075 | 3.70E-50 | -1.69E-46 |
| MS.gene055926 | MS.gene80574 | 0.816185 | 6.30E-52 | -1.69E-46 |
| MS.gene056045 | MS.gene80574 | 0.826896 | 2.11E-54 | -1.69E-46 |
| MS.gene056174 | MS.gene80574 | 0.816786 | 4.62E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene80574 | 0.809048 | 2.29E-50 | -1.69E-46 |
| MS.gene056308 | MS.gene80574 | 0.816301 | 5.93E-52 | -1.69E-46 |
| MS.gene056507 | MS.gene80574 | 0.846593 | 1.97E-59 | -1.69E-46 |
| MS.gene05686 | MS.gene80574 | 0.815289 | 9.98E-52 | -1.69E-46 |
| MS.gene057601 | MS.gene80574 | 0.812624 | 3.86E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene80574 | 0.8204 | 7.00E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene80574 | 0.829021 | 6.50E-55 | -1.69E-46 |
| MS.gene058010 | MS.gene80574 | 0.840741 | 7.24E-58 | -1.69E-46 |
| MS.gene058081 | MS.gene80574 | 0.817443 | 3.29E-52 | -1.69E-46 |
| MS.gene058289 | MS.gene80574 | 0.802966 | 4.37E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene80574 | 0.819511 | 1.12E-52 | -1.69E-46 |
| MS.gene058647 | MS.gene80574 | 0.805857 | 1.09E-49 | -1.69E-46 |
| MS.gene058919 | MS.gene80574 | 0.824609 | 7.36E-54 | -1.69E-46 |
| MS.gene059439 | MS.gene80574 | 0.826618 | 2.46E-54 | -1.69E-46 |
| MS.gene059725 | MS.gene80574 | 0.827652 | 1.39E-54 | -1.69E-46 |
| MS.gene06052 | MS.gene80574 | 0.832737 | 7.97E-56 | -1.69E-46 |
| MS.gene060933 | MS.gene80574 | 0.816369 | 5.73E-52 | -1.69E-46 |
| MS.gene061006 | MS.gene80574 | 0.800522 | 1.39E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80574.t1 | MTR_4g112420 | 98.113 | 901 | 16 | 1 | 1 | 901 | 1 | 900 | 0.0 | 1738 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80574.t1 | AT5G23080 | 61.055 | 796 | 288 | 8 | 1 | 794 | 1 | 776 | 0.0 | 899 |
| MS.gene80574.t1 | AT5G23080 | 59.171 | 796 | 273 | 9 | 1 | 794 | 1 | 746 | 0.0 | 862 |
Find 249 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGATTGCTGGTGACTTTC+TGG | 0.061998 | 8.1:+14630113 | MS.gene80574:CDS |
| GGTTCTAATGCTATGATTAT+TGG | 0.139946 | 8.1:-14630367 | None:intergenic |
| GAGAGTCGAGGTCAGATCTT+AGG | 0.219803 | 8.1:+14628234 | MS.gene80574:CDS |
| CATTGAAACTCCTCCCTCTT+TGG | 0.225275 | 8.1:-14629234 | None:intergenic |
| TAACACTTTAAAATTATTAA+TGG | 0.239009 | 8.1:+14627996 | MS.gene80574:CDS |
| TGGTGACTTTCTGGAATCTT+TGG | 0.239033 | 8.1:+14630122 | MS.gene80574:CDS |
| GGAAAGGCTGCCCCTGGTTT+TGG | 0.257794 | 8.1:+14625204 | MS.gene80574:CDS |
| GTTCTAATGCTATGATTATT+GGG | 0.262541 | 8.1:-14630366 | None:intergenic |
| GAGTCGCGGTCGCTCAATTA+AGG | 0.274383 | 8.1:+14623178 | MS.gene80574:CDS |
| ATCCATACAGGTCTTGCTTT+GGG | 0.285410 | 8.1:-14624832 | None:intergenic |
| AACTCAGGAGCATGCTTATA+AGG | 0.301247 | 8.1:-14624866 | None:intergenic |
| GAATTCAGCTCTGTTCTTCC+TGG | 0.301826 | 8.1:-14621152 | None:intergenic |
| AGATTCCACGGCGCATTTAC+AGG | 0.304760 | 8.1:+14620964 | MS.gene80574:CDS |
| ATCCAATTCTGACTATAAAA+TGG | 0.305457 | 8.1:+14627059 | MS.gene80574:CDS |
| GGTGACTTTCTGGAATCTTT+GGG | 0.312867 | 8.1:+14630123 | MS.gene80574:CDS |
| GGGAGCAGGTCCAGGAATTA+TGG | 0.332732 | 8.1:-14623013 | None:intergenic |
| ATTGAAACTCCTCCCTCTTT+GGG | 0.334520 | 8.1:-14629233 | None:intergenic |
| AAGCATGCTCCTGAGTTTAG+AGG | 0.335720 | 8.1:+14624872 | MS.gene80574:CDS |
| AAGGACCAGGGTAATCTTCC+TGG | 0.346309 | 8.1:+14627024 | MS.gene80574:CDS |
| CTGCACCTGCTCCACGGATT+AGG | 0.347632 | 8.1:+14629426 | MS.gene80574:CDS |
| GTGGAGGGACCTCGTAGTTC+TGG | 0.347865 | 8.1:-14627951 | None:intergenic |
| AAGCAAGACCTGTATGGATT+AGG | 0.355439 | 8.1:+14624836 | MS.gene80574:CDS |
| GTAAATCAAGGAAGTCTAAT+GGG | 0.355941 | 8.1:+14630412 | MS.gene80574:CDS |
| TTGCAACAATCTGCTAATAA+AGG | 0.359565 | 8.1:+14629536 | MS.gene80574:CDS |
| CTGAACTGCTGCTATAATCT+TGG | 0.360523 | 8.1:-14630482 | None:intergenic |
| CGATCTTGTTGATCCTTACA+TGG | 0.360858 | 8.1:+14629287 | MS.gene80574:CDS |
| TTCTGCTGGTTACTATAATT+CGG | 0.367163 | 8.1:+14620993 | MS.gene80574:CDS |
| TTTCAGATTTGAGGCTCCTC+TGG | 0.370926 | 8.1:+14627873 | MS.gene80574:intron |
| AACTTCCTCTCTGGAGGAAC+TGG | 0.374431 | 8.1:+14628102 | MS.gene80574:CDS |
| TAATCTACGCGGTGTGTTGA+TGG | 0.383785 | 8.1:-14630579 | None:intergenic |
| CCATTGTTTAACTTCCTCTC+TGG | 0.387503 | 8.1:+14628093 | MS.gene80574:CDS |
| TCACGCCCATCCAGCAAAAC+AGG | 0.388333 | 8.1:+14624993 | MS.gene80574:CDS |
| AGAATTTGAAAAGCCTTTCA+AGG | 0.388604 | 8.1:+14628825 | MS.gene80574:CDS |
| CCATCCAGCAAAACAGGATC+GGG | 0.390773 | 8.1:+14624999 | MS.gene80574:CDS |
| AATCCATACAGGTCTTGCTT+TGG | 0.393442 | 8.1:-14624833 | None:intergenic |
| GTTACCTTGTATAGGTCAAC+TGG | 0.395656 | 8.1:-14629623 | None:intergenic |
| CTCTTGAGGGTCCACCCTCA+TGG | 0.399571 | 8.1:-14630320 | None:intergenic |
| AGTAAATCAAGGAAGTCTAA+TGG | 0.399971 | 8.1:+14630411 | MS.gene80574:CDS |
| GAATCTTTGGGCAAGGAACT+AGG | 0.405092 | 8.1:+14630135 | MS.gene80574:CDS |
| TCGTCACAGTTTGACACATT+TGG | 0.405240 | 8.1:+14622034 | MS.gene80574:CDS |
| ATAACTGTTGTCACCTCTTG+AGG | 0.407591 | 8.1:-14630334 | None:intergenic |
| TGAAGTACCTTTCCCATGTA+AGG | 0.408373 | 8.1:-14629300 | None:intergenic |
| TCACACGCTGATGCACTCTA+TGG | 0.412740 | 8.1:+14623203 | MS.gene80574:CDS |
| TCGGAGTTGACCGGAGGATT+CGG | 0.414146 | 8.1:-14620297 | None:intergenic |
| CGACGCAGTTCAAGGTCAAA+AGG | 0.416343 | 8.1:+14630711 | MS.gene80574:CDS |
| GCTTCCACGCAGGGAGAGTT+CGG | 0.417556 | 8.1:-14620316 | None:intergenic |
| GGGAGAAGCGTGAAGATGAT+AGG | 0.421733 | 8.1:+14630433 | MS.gene80574:CDS |
| CTGGACGATTTAAAAGTTTG+TGG | 0.425618 | 8.1:-14621133 | None:intergenic |
| TCTGGAAGTTCGAGTTTAGC+TGG | 0.425710 | 8.1:+14628913 | MS.gene80574:CDS |
| TCCTCAGGAGGAGGAACATC+TGG | 0.426132 | 8.1:-14627973 | None:intergenic |
| TAATCTTGGTTTCTGACTAA+AGG | 0.430273 | 8.1:-14630468 | None:intergenic |
| TGCAGGCCATCCATAATTCC+TGG | 0.431605 | 8.1:+14623003 | MS.gene80574:intron |
| TTTATCAAGGAGAAGTATAA+AGG | 0.435366 | 8.1:+14628880 | MS.gene80574:CDS |
| AAGATTTGAGCAGTTTATCA+AGG | 0.438094 | 8.1:+14628867 | MS.gene80574:CDS |
| GAATCTTCCTCACGTTCAAT+CGG | 0.438803 | 8.1:-14620248 | None:intergenic |
| ATGTCTTTCTTTGCAGTCAC+GGG | 0.448790 | 8.1:-14629506 | None:intergenic |
| GCATTGAGCCGTCTGATTGC+TGG | 0.456711 | 8.1:+14630102 | MS.gene80574:CDS |
| AATTGTTTGTTACCTTGTAT+AGG | 0.457060 | 8.1:-14629631 | None:intergenic |
| TAAATGTGGCAAATTATATG+AGG | 0.460842 | 8.1:+14628041 | MS.gene80574:CDS |
| TTGTGTAGGGTAAGGTGTAT+CGG | 0.462927 | 8.1:-14630172 | None:intergenic |
| AATCTACGCGGTGTGTTGAT+GGG | 0.463052 | 8.1:-14630578 | None:intergenic |
| AGAGTCGAGGTCAGATCTTA+GGG | 0.464851 | 8.1:+14628235 | MS.gene80574:CDS |
| TTCTCCTTAAAATCTACAGC+TGG | 0.466007 | 8.1:-14629201 | None:intergenic |
| CTGATGATTCAGATGATGAA+GGG | 0.473463 | 8.1:+14630019 | MS.gene80574:CDS |
| GCTGTCAGCCTTTGCACACC+AGG | 0.473930 | 8.1:-14628210 | None:intergenic |
| TAACTGTTGTCACCTCTTGA+GGG | 0.475933 | 8.1:-14630333 | None:intergenic |
| TCTGATGATTCAGATGATGA+AGG | 0.480831 | 8.1:+14630018 | MS.gene80574:CDS |
| AATTTGTTTCAGAGATGAAA+AGG | 0.481127 | 8.1:+14624970 | MS.gene80574:intron |
| CCCATCCAGCAAAACAGGAT+CGG | 0.481763 | 8.1:+14624998 | MS.gene80574:CDS |
| CCTTACCCTACACAAAAGTC+TGG | 0.483570 | 8.1:+14630180 | MS.gene80574:CDS |
| ATCGGAGATACTAGTTCCCT+TGG | 0.484119 | 8.1:-14630388 | None:intergenic |
| TGAGGCTCCTCTGGTTCCCA+AGG | 0.484163 | 8.1:+14627882 | MS.gene80574:CDS |
| ATGTATCTATAAGATTATAT+TGG | 0.484329 | 8.1:-14628323 | None:intergenic |
| TCAAGAGGTGACAACAGTTA+TGG | 0.485815 | 8.1:+14630336 | MS.gene80574:CDS |
| AATTCATCGGGAGCAGGTCC+AGG | 0.486686 | 8.1:-14623021 | None:intergenic |
| GTTCACATCTGGTGCAATAG+AGG | 0.488601 | 8.1:+14629077 | MS.gene80574:CDS |
| TTTAAAATTATTAATGGAGG+GGG | 0.489261 | 8.1:+14628002 | MS.gene80574:CDS |
| TCTTCGATGGATTTCATCAC+AGG | 0.490293 | 8.1:+14629042 | MS.gene80574:CDS |
| AAATGAAACTGAAGAGGAAG+TGG | 0.490644 | 8.1:+14629580 | MS.gene80574:CDS |
| TGCTGGTTACTATAATTCGG+TGG | 0.492522 | 8.1:+14620996 | MS.gene80574:CDS |
| CTATAATTCGGTGGGCTCAA+AGG | 0.493859 | 8.1:+14621005 | MS.gene80574:CDS |
| CTTTCTGGAATCTTTGGGCA+AGG | 0.496197 | 8.1:+14630128 | MS.gene80574:CDS |
| ACTTTAAAATTATTAATGGA+GGG | 0.497508 | 8.1:+14628000 | MS.gene80574:CDS |
| GTGATGAAATCCATCGAAGA+TGG | 0.497842 | 8.1:-14629039 | None:intergenic |
| TGTGTAGGGTAAGGTGTATC+GGG | 0.500816 | 8.1:-14630171 | None:intergenic |
| TGATGGGGCACGAAATCCTT+GGG | 0.500879 | 8.1:-14627898 | None:intergenic |
| TTGGAGCAAATAAATGGATT+CGG | 0.502376 | 8.1:+14620196 | None:intergenic |
| GATGTCTTTCTTTGCAGTCA+CGG | 0.504975 | 8.1:-14629507 | None:intergenic |
| CACTTTAAAATTATTAATGG+AGG | 0.506024 | 8.1:+14627999 | MS.gene80574:CDS |
| CTTCAATTCATCAGCAGGAA+AGG | 0.507230 | 8.1:+14625188 | MS.gene80574:intron |
| CTAATCCGTGGAGCAGGTGC+AGG | 0.508097 | 8.1:-14629425 | None:intergenic |
| TGATCAAACTAGGGTGCTGT+TGG | 0.510068 | 8.1:+14628173 | MS.gene80574:CDS |
| AACCCAAAGCAAGACCTGTA+TGG | 0.510484 | 8.1:+14624830 | MS.gene80574:CDS |
| AGGTCCAGAAAATGCATGAT+GGG | 0.511373 | 8.1:-14627914 | None:intergenic |
| GATCAAAACCTAATCCATAC+AGG | 0.512730 | 8.1:-14624844 | None:intergenic |
| GCTTTCAATTCCATCTTCGA+TGG | 0.513957 | 8.1:+14629029 | MS.gene80574:CDS |
| AGACTTCCTTGATTTACTAT+CGG | 0.516814 | 8.1:-14630406 | None:intergenic |
| TCAGCAGGAAAGGCTGCCCC+TGG | 0.517708 | 8.1:+14625198 | MS.gene80574:intron |
| GGTGAAACTGCTGTTGAAGA+TGG | 0.519487 | 8.1:+14623151 | MS.gene80574:CDS |
| TTACTCCTAATCCGTGGAGC+AGG | 0.520580 | 8.1:-14629431 | None:intergenic |
| AGAAATGCAATGATCAAACT+AGG | 0.521469 | 8.1:+14628163 | MS.gene80574:CDS |
| GTGAGCAATTTCAGCAGCTG+TGG | 0.521850 | 8.1:-14622059 | None:intergenic |
| AAGCAGTTCGTCGTCAGAAG+AGG | 0.522746 | 8.1:+14630605 | MS.gene80574:CDS |
| AATCTTTGGGCAAGGAACTA+GGG | 0.523334 | 8.1:+14630136 | MS.gene80574:CDS |
| AAAGCCATTGCCGAATCCTC+CGG | 0.526607 | 8.1:+14620287 | MS.gene80574:CDS |
| CGACACAGGAGGCGTGATGT+AGG | 0.528803 | 8.1:+14630657 | MS.gene80574:CDS |
| TATAAAGGTGGATTACGCTC+TGG | 0.528839 | 8.1:+14628895 | MS.gene80574:CDS |
| GGTGTGATGGAGTTCACATC+TGG | 0.529397 | 8.1:+14629066 | MS.gene80574:CDS |
| CTTTAAAATTATTAATGGAG+GGG | 0.529876 | 8.1:+14628001 | MS.gene80574:CDS |
| TTTGCAGGATCATCCTTGAA+AGG | 0.530305 | 8.1:-14628838 | None:intergenic |
| GGGCAAGGAACTAGGGATTG+AGG | 0.530517 | 8.1:+14630143 | MS.gene80574:CDS |
| GAGGTCCAGAAAATGCATGA+TGG | 0.531572 | 8.1:-14627915 | None:intergenic |
| ATGATGGGGCACGAAATCCT+TGG | 0.532535 | 8.1:-14627899 | None:intergenic |
| TCTTGAGGGTCCACCCTCAT+GGG | 0.532705 | 8.1:-14630319 | None:intergenic |
| GAGCATCATCGTTCACAGGC+TGG | 0.537286 | 8.1:-14624665 | None:intergenic |
| TTCAAGGTCAAAAGGGAGAC+GGG | 0.538060 | 8.1:+14630719 | MS.gene80574:CDS |
| TTTACATCAGATTCAGTGAA+GGG | 0.539651 | 8.1:+14629470 | MS.gene80574:CDS |
| TTACCTCTTGCTTCCACGCA+GGG | 0.540211 | 8.1:-14620325 | None:intergenic |
| GCTGGAATAACTAATTCATC+GGG | 0.542586 | 8.1:-14623033 | None:intergenic |
| CTGTGTAGATGCTAGAAGAC+AGG | 0.543687 | 8.1:+14624548 | MS.gene80574:intron |
| AGATTATAGCAGCAGTTCAG+AGG | 0.543896 | 8.1:+14630485 | MS.gene80574:CDS |
| GCTGGTTACTATAATTCGGT+GGG | 0.545148 | 8.1:+14620997 | MS.gene80574:CDS |
| ATAACTAATTCATCGGGAGC+AGG | 0.545337 | 8.1:-14623027 | None:intergenic |
| TTCAGACGATACAAAAGTGA+AGG | 0.545650 | 8.1:+14624596 | MS.gene80574:CDS |
| CGCTTGCAGAGAAGAGGTGA+AGG | 0.547244 | 8.1:-14629261 | None:intergenic |
| GGCTGGAATAACTAATTCAT+CGG | 0.547398 | 8.1:-14623034 | None:intergenic |
| ACTTACAAATGATGCAGACT+TGG | 0.548369 | 8.1:-14628349 | None:intergenic |
| CTGGAAGTTCGAGTTTAGCT+GGG | 0.549660 | 8.1:+14628914 | MS.gene80574:CDS |
| TTGTTTAACTTCCTCTCTGG+AGG | 0.549774 | 8.1:+14628096 | MS.gene80574:CDS |
| GATGAGGATGTCTATGCCAC+TGG | 0.550090 | 8.1:+14625258 | MS.gene80574:CDS |
| AGTTAAACAATGGATTTGAT+CGG | 0.550193 | 8.1:-14628083 | None:intergenic |
| TGTTGATCCTTACATGGGAA+AGG | 0.551584 | 8.1:+14629293 | MS.gene80574:CDS |
| TGCTCACAAACAAGCTGAGA+AGG | 0.552190 | 8.1:+14622075 | MS.gene80574:CDS |
| CAAACTAGGGTGCTGTTGGA+TGG | 0.554610 | 8.1:+14628177 | MS.gene80574:CDS |
| GCAGCAGTTCAGAGGAGGAA+AGG | 0.556042 | 8.1:+14630493 | MS.gene80574:CDS |
| GACTGAGCATCATCGTTCAC+AGG | 0.556519 | 8.1:-14624669 | None:intergenic |
| AGACCTACAGACTCTGTGGC+TGG | 0.556737 | 8.1:-14623051 | None:intergenic |
| GGCATAGACATCCTCATCCT+CGG | 0.557020 | 8.1:-14625253 | None:intergenic |
| CCTTAAAATCTACAGCTGGC+TGG | 0.557544 | 8.1:-14629197 | None:intergenic |
| AGGAGGAAAGGAGCAGAAAA+CGG | 0.558925 | 8.1:+14630505 | MS.gene80574:CDS |
| AAAGTGTTATCCTCAGGAGG+AGG | 0.559208 | 8.1:-14627982 | None:intergenic |
| ATCTACGCGGTGTGTTGATG+GGG | 0.559670 | 8.1:-14630577 | None:intergenic |
| GAAGTTGTCAATATCACCCT+TGG | 0.560994 | 8.1:-14624637 | None:intergenic |
| TCGAAACGCTTGCAGAGAAG+AGG | 0.561426 | 8.1:-14629267 | None:intergenic |
| CAAAGAGGGAGGAGTTTCAA+TGG | 0.561988 | 8.1:+14629235 | MS.gene80574:CDS |
| GGAACTTGATGCCGAGGATG+AGG | 0.562209 | 8.1:+14625242 | MS.gene80574:CDS |
| AGTGCACCAATGCCAAAACC+AGG | 0.564065 | 8.1:-14625216 | None:intergenic |
| TTGGATGCCGCTCTGAAACC+AGG | 0.564367 | 8.1:-14627042 | None:intergenic |
| ATTGAAACATGATTTGCCAC+AGG | 0.566832 | 8.1:+14630284 | MS.gene80574:CDS |
| AGGGAGAGTTCGGAGTTGAC+CGG | 0.568125 | 8.1:-14620306 | None:intergenic |
| GGAGGAGGAACATCTGGTGG+AGG | 0.568514 | 8.1:-14627967 | None:intergenic |
| AGCTGAAAATGAAACTGAAG+AGG | 0.568706 | 8.1:+14629574 | MS.gene80574:CDS |
| TGATGATTCAGATGATGAAG+GGG | 0.570040 | 8.1:+14630020 | MS.gene80574:CDS |
| TTGACCGGAGGATTCGGCAA+TGG | 0.571416 | 8.1:-14620291 | None:intergenic |
| GTATCTCCGATAGTAAATCA+AGG | 0.571729 | 8.1:+14630400 | MS.gene80574:CDS |
| AAGATAGTCTCTCTTGAGCA+CGG | 0.572289 | 8.1:-14628954 | None:intergenic |
| GAAGGGAGGCGAAGATTCCA+CGG | 0.575288 | 8.1:+14620952 | MS.gene80574:CDS |
| ATTATTATGCAAGGAAACTG+TGG | 0.577291 | 8.1:+14628130 | MS.gene80574:CDS |
| AACTGCTGTTGAAGATGGGA+TGG | 0.577575 | 8.1:+14623156 | MS.gene80574:CDS |
| GACGCAGTTCAAGGTCAAAA+GGG | 0.580793 | 8.1:+14630712 | MS.gene80574:CDS |
| TTTAAAGTGTTATCCTCAGG+AGG | 0.582447 | 8.1:-14627985 | None:intergenic |
| AAAGGAGCAGAAAACGCTCT+AGG | 0.583026 | 8.1:+14630628 | MS.gene80574:CDS |
| GTAGAAGAAATAGATGAGGA+TGG | 0.584285 | 8.1:-14628288 | None:intergenic |
| ATCAAGGAGAAGTATAAAGG+TGG | 0.586481 | 8.1:+14628883 | MS.gene80574:CDS |
| TTTCATCACAGGTGGTGTGA+TGG | 0.586845 | 8.1:+14629053 | MS.gene80574:CDS |
| CATCGTTCACAGGCTGGTCA+AGG | 0.588804 | 8.1:-14624659 | None:intergenic |
| GATCTTGTTGATCCTTACAT+GGG | 0.589885 | 8.1:+14629288 | MS.gene80574:CDS |
| AGATAGTCTCTCTTGAGCAC+GGG | 0.590707 | 8.1:-14628953 | None:intergenic |
| TCCACGGATTAGGAGTAAGA+TGG | 0.591100 | 8.1:+14629436 | MS.gene80574:CDS |
| GAGGAGGAACATCTGGTGGA+GGG | 0.591482 | 8.1:-14627966 | None:intergenic |
| TGGAAGTTGAAAATATTGAA+AGG | 0.591650 | 8.1:+14629600 | MS.gene80574:CDS |
| AGACAATAATACTGTCAAAG+TGG | 0.593012 | 8.1:+14630044 | MS.gene80574:CDS |
| ATTACCTCTTGCTTCCACGC+AGG | 0.593404 | 8.1:-14620326 | None:intergenic |
| AATTCGGTGGGCTCAAAGGA+AGG | 0.593768 | 8.1:+14621009 | MS.gene80574:CDS |
| AAAGGAAGATCAGAAGGACC+AGG | 0.596115 | 8.1:+14627011 | MS.gene80574:CDS |
| AATCATAGCATTAGAACCAA+GGG | 0.599768 | 8.1:+14630372 | MS.gene80574:CDS |
| GTTCGTCGTCAGAAGAGGAA+AGG | 0.599785 | 8.1:+14630610 | MS.gene80574:CDS |
| CAGTACATTGCCCATGAGGG+TGG | 0.600528 | 8.1:+14630309 | MS.gene80574:CDS |
| TTTATTAGCAGATTGTTGCA+AGG | 0.601292 | 8.1:-14629534 | None:intergenic |
| AAATGCCTCCTGGTGTGCAA+AGG | 0.601363 | 8.1:+14628202 | MS.gene80574:CDS |
| GAAAAGCGAAAACAGAGCAG+AGG | 0.601404 | 8.1:+14629000 | MS.gene80574:CDS |
| TAATCATAGCATTAGAACCA+AGG | 0.602618 | 8.1:+14630371 | MS.gene80574:CDS |
| GTTCAAGGTCAAAAGGGAGA+CGG | 0.603912 | 8.1:+14630718 | MS.gene80574:CDS |
| CGATACAAAAGTGAAGGTTA+CGG | 0.604362 | 8.1:+14624602 | MS.gene80574:CDS |
| CTGAGAAGGAGCAGAAACAG+AGG | 0.604592 | 8.1:+14622089 | MS.gene80574:CDS |
| AGATGAGGATGGATCTTCAG+AGG | 0.604750 | 8.1:-14628277 | None:intergenic |
| ATTCTGACTATAAAATGGAA+AGG | 0.606191 | 8.1:+14627064 | MS.gene80574:CDS |
| GTGAAACTGCTGTTGAAGAT+GGG | 0.607563 | 8.1:+14623152 | MS.gene80574:CDS |
| GAAATGCAATGATCAAACTA+GGG | 0.608183 | 8.1:+14628164 | MS.gene80574:CDS |
| GAGGGACCTCGTAGTTCTGG+TGG | 0.611220 | 8.1:-14627948 | None:intergenic |
| ATCTGTAGAAGAAATAGATG+AGG | 0.612084 | 8.1:-14628292 | None:intergenic |
| TATAGCCTGCACCTGCTCCA+CGG | 0.614022 | 8.1:+14629420 | MS.gene80574:intron |
| TTATTATGCAAGGAAACTGT+GGG | 0.614379 | 8.1:+14628131 | MS.gene80574:CDS |
| GAAAGTCACCAGCAATCAGA+CGG | 0.615531 | 8.1:-14630110 | None:intergenic |
| GGATCAGTACATTGCCCATG+AGG | 0.616384 | 8.1:+14630305 | MS.gene80574:CDS |
| GTTTCCTTGCATAATAATCG+TGG | 0.617306 | 8.1:-14628125 | None:intergenic |
| GCAAATCTGGTTGCTAAATG+TGG | 0.618667 | 8.1:+14628027 | MS.gene80574:CDS |
| CATGAGGGTGGACCCTCAAG+AGG | 0.620391 | 8.1:+14630321 | MS.gene80574:CDS |
| TACGGACTCTGAGCCTACCA+AGG | 0.620501 | 8.1:+14624620 | MS.gene80574:CDS |
| CCAGAGAGGAAGTTAAACAA+TGG | 0.621814 | 8.1:-14628093 | None:intergenic |
| GCAGGTCCAGGAATTATGGA+TGG | 0.622493 | 8.1:-14623009 | None:intergenic |
| AACTCCGAACTCTCCCTGCG+TGG | 0.622651 | 8.1:+14620312 | MS.gene80574:CDS |
| TTGAAGATGGGATGGAGTCG+CGG | 0.622679 | 8.1:+14623164 | MS.gene80574:CDS |
| CGGAACGCCGATTGAACGTG+AGG | 0.623581 | 8.1:+14620241 | MS.gene80574:CDS |
| TCGATGGATTTCATCACAGG+TGG | 0.624045 | 8.1:+14629045 | MS.gene80574:CDS |
| TTGTCAATATCACCCTTGGT+AGG | 0.625612 | 8.1:-14624633 | None:intergenic |
| TTATAGCAGCAGTTCAGAGG+AGG | 0.632369 | 8.1:+14630488 | MS.gene80574:CDS |
| ACCAGATGTTCCTCCTCCTG+AGG | 0.635803 | 8.1:+14627972 | MS.gene80574:CDS |
| GTGCACCAATGCCAAAACCA+GGG | 0.635993 | 8.1:-14625215 | None:intergenic |
| TTCCACGGCGCATTTACAGG+AGG | 0.637183 | 8.1:+14620967 | MS.gene80574:CDS |
| TCAGGAGGAGGAACATCTGG+TGG | 0.639636 | 8.1:-14627970 | None:intergenic |
| GCAAAACCTGAATTCGTGAA+CGG | 0.639890 | 8.1:+14630240 | MS.gene80574:CDS |
| TCTCCCTGCGTGGAAGCAAG+AGG | 0.641478 | 8.1:+14620322 | MS.gene80574:CDS |
| TCCATCTTACTCCTAATCCG+TGG | 0.642133 | 8.1:-14629437 | None:intergenic |
| CTGGCCACGATTATTATGCA+AGG | 0.643794 | 8.1:+14628121 | MS.gene80574:CDS |
| ATTCCAGCCACAGAGTCTGT+AGG | 0.644088 | 8.1:+14623048 | MS.gene80574:CDS |
| AAGGCCAGTTGACCTATACA+AGG | 0.644137 | 8.1:+14629619 | MS.gene80574:CDS |
| GCTCTAGGCATCATCGACAC+AGG | 0.645427 | 8.1:+14630643 | MS.gene80574:CDS |
| TGAAACCAGGAAGATTACCC+TGG | 0.646480 | 8.1:-14627029 | None:intergenic |
| TAAATCAAGGAAGTCTAATG+GGG | 0.647758 | 8.1:+14630413 | MS.gene80574:CDS |
| GAGAGTTCGGAGTTGACCGG+AGG | 0.651969 | 8.1:-14620303 | None:intergenic |
| AACCTCCTGTAAATGCGCCG+TGG | 0.652495 | 8.1:-14620969 | None:intergenic |
| TGGGCAATGTACTGATCCTG+TGG | 0.653041 | 8.1:-14630300 | None:intergenic |
| AGGTTAGAGATGACGAAGGG+AGG | 0.656638 | 8.1:+14620938 | MS.gene80574:intron |
| ACGAAATCCTTGGGAACCAG+AGG | 0.657571 | 8.1:-14627889 | None:intergenic |
| GAGTCGAGGTCAGATCTTAG+GGG | 0.659161 | 8.1:+14628236 | MS.gene80574:CDS |
| TGCACCAATGCCAAAACCAG+GGG | 0.661636 | 8.1:-14625214 | None:intergenic |
| TCCAGGTTAGAGATGACGAA+GGG | 0.661799 | 8.1:+14620935 | MS.gene80574:intron |
| ACGGACTCTGAGCCTACCAA+GGG | 0.661898 | 8.1:+14624621 | MS.gene80574:CDS |
| CATCCAGCAAAACAGGATCG+GGG | 0.663189 | 8.1:+14625000 | MS.gene80574:CDS |
| CGTGGCCAGTTCCTCCAGAG+AGG | 0.675159 | 8.1:-14628107 | None:intergenic |
| GGTCCAGAAAATGCATGATG+GGG | 0.675508 | 8.1:-14627913 | None:intergenic |
| GATCAGTACATTGCCCATGA+GGG | 0.676681 | 8.1:+14630306 | MS.gene80574:CDS |
| TTCTGGTGGTTAATATCACG+AGG | 0.679466 | 8.1:-14627934 | None:intergenic |
| CTCCAGGTTAGAGATGACGA+AGG | 0.679870 | 8.1:+14620934 | MS.gene80574:intron |
| CTAGGCATCATCGACACAGG+AGG | 0.681123 | 8.1:+14630646 | MS.gene80574:CDS |
| TTATGTTGAAGAAGAGATCG+AGG | 0.681846 | 8.1:+14626957 | MS.gene80574:CDS |
| AAGGAAGATCAGAAGGACCA+GGG | 0.683013 | 8.1:+14627012 | MS.gene80574:CDS |
| GAACAGACCTACAGACTCTG+TGG | 0.694280 | 8.1:-14623055 | None:intergenic |
| ACTTGAGGAACTTGATGCCG+AGG | 0.695667 | 8.1:+14625236 | MS.gene80574:CDS |
| TAGATGCTAGAAGACAGGCT+CGG | 0.698530 | 8.1:+14624553 | MS.gene80574:intron |
| GTCAGCCTTTGCACACCAGG+AGG | 0.702166 | 8.1:-14628207 | None:intergenic |
| GTAGGGTAAGGTGTATCGGG+AGG | 0.703259 | 8.1:-14630168 | None:intergenic |
| AGGCTGACAGCTGAGAGTCG+AGG | 0.706669 | 8.1:+14628222 | MS.gene80574:CDS |
| TCAGTCTTCTAAGAGCACAC+CGG | 0.730803 | 8.1:+14624686 | MS.gene80574:CDS |
| GAACGGTGAAAACAATAGTG+TGG | 0.732923 | 8.1:+14630257 | MS.gene80574:CDS |
| TAATCTTCCTGGTTTCAGAG+CGG | 0.736798 | 8.1:+14627035 | MS.gene80574:CDS |
| AACTGCTTCTATAATCTACG+CGG | 0.764628 | 8.1:-14630590 | None:intergenic |
| TATTAACCACCAGAACTACG+AGG | 0.780799 | 8.1:+14627942 | MS.gene80574:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 14620209 | 14630771 | 14620209 | ID=MS.gene80574 |
| chr8.1 | mRNA | 14620209 | 14630771 | 14620209 | ID=MS.gene80574.t1;Parent=MS.gene80574 |
| chr8.1 | exon | 14620209 | 14620343 | 14620209 | ID=MS.gene80574.t1.exon1;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14620209 | 14620343 | 14620209 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| chr8.1 | exon | 14620940 | 14621030 | 14620940 | ID=MS.gene80574.t1.exon2;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14620940 | 14621030 | 14620940 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| chr8.1 | exon | 14621125 | 14621219 | 14621125 | ID=MS.gene80574.t1.exon3;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14621125 | 14621219 | 14621125 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| chr8.1 | exon | 14622007 | 14622110 | 14622007 | ID=MS.gene80574.t1.exon4;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14622007 | 14622110 | 14622007 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| chr8.1 | exon | 14623008 | 14623069 | 14623008 | ID=MS.gene80574.t1.exon5;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14623008 | 14623069 | 14623008 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| chr8.1 | exon | 14623150 | 14623224 | 14623150 | ID=MS.gene80574.t1.exon6;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14623150 | 14623224 | 14623150 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| chr8.1 | exon | 14624556 | 14624707 | 14624556 | ID=MS.gene80574.t1.exon7;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14624556 | 14624707 | 14624556 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| chr8.1 | exon | 14624818 | 14624893 | 14624818 | ID=MS.gene80574.t1.exon8;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14624818 | 14624893 | 14624818 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| chr8.1 | exon | 14624982 | 14625068 | 14624982 | ID=MS.gene80574.t1.exon9;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14624982 | 14625068 | 14624982 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| chr8.1 | exon | 14625202 | 14625279 | 14625202 | ID=MS.gene80574.t1.exon10;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14625202 | 14625279 | 14625202 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| chr8.1 | exon | 14626938 | 14627085 | 14626938 | ID=MS.gene80574.t1.exon11;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14626938 | 14627085 | 14626938 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| chr8.1 | exon | 14627879 | 14628365 | 14627879 | ID=MS.gene80574.t1.exon12;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14627879 | 14628365 | 14627879 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| chr8.1 | exon | 14628814 | 14629098 | 14628814 | ID=MS.gene80574.t1.exon13;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14628814 | 14629098 | 14628814 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| chr8.1 | exon | 14629186 | 14629314 | 14629186 | ID=MS.gene80574.t1.exon14;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14629186 | 14629314 | 14629186 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| chr8.1 | exon | 14629425 | 14629640 | 14629425 | ID=MS.gene80574.t1.exon15;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14629425 | 14629640 | 14629425 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| chr8.1 | exon | 14630009 | 14630771 | 14630009 | ID=MS.gene80574.t1.exon16;Parent=MS.gene80574.t1 |
| chr8.1 | CDS | 14630009 | 14630771 | 14630009 | ID=cds.MS.gene80574.t1;Parent=MS.gene80574.t1 |
| Gene Sequence |
| Protein sequence |
