Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80641.t1 | XP_003616557.1 | 95.3 | 277 | 12 | 1 | 1 | 276 | 21 | 297 | 1.30E-142 | 515.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80641.t1 | O04195 | 40.1 | 267 | 137 | 5 | 1 | 263 | 23 | 270 | 4.0e-44 | 179.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80641.t1 | G7KBV9 | 95.3 | 277 | 12 | 1 | 1 | 276 | 21 | 297 | 9.1e-143 | 515.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene80641 | 0.806576 | 7.69E-50 | -1.69E-46 |
| MS.gene049272 | MS.gene80641 | 0.800312 | 1.53E-48 | -1.69E-46 |
| MS.gene049435 | MS.gene80641 | 0.80039 | 1.47E-48 | -1.69E-46 |
| MS.gene049452 | MS.gene80641 | 0.809684 | 1.68E-50 | -1.69E-46 |
| MS.gene049669 | MS.gene80641 | 0.813875 | 2.05E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene80641 | 0.827909 | 1.21E-54 | -1.69E-46 |
| MS.gene050355 | MS.gene80641 | 0.811539 | 6.65E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene80641 | 0.804339 | 2.27E-49 | -1.69E-46 |
| MS.gene051190 | MS.gene80641 | 0.801903 | 7.23E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene80641 | 0.800773 | 1.23E-48 | -1.69E-46 |
| MS.gene051279 | MS.gene80641 | 0.802204 | 6.27E-49 | -1.69E-46 |
| MS.gene051368 | MS.gene80641 | 0.815552 | 8.72E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene80641 | 0.822693 | 2.07E-53 | -1.69E-46 |
| MS.gene051926 | MS.gene80641 | -0.809906 | 1.50E-50 | -1.69E-46 |
| MS.gene052190 | MS.gene80641 | 0.800064 | 1.72E-48 | -1.69E-46 |
| MS.gene052333 | MS.gene80641 | 0.841984 | 3.41E-58 | -1.69E-46 |
| MS.gene052519 | MS.gene80641 | 0.82821 | 1.02E-54 | -1.69E-46 |
| MS.gene052582 | MS.gene80641 | 0.828347 | 9.46E-55 | -1.69E-46 |
| MS.gene052584 | MS.gene80641 | 0.809047 | 2.29E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene80641 | 0.822048 | 2.92E-53 | -1.69E-46 |
| MS.gene053166 | MS.gene80641 | 0.827248 | 1.74E-54 | -1.69E-46 |
| MS.gene05414 | MS.gene80641 | 0.835586 | 1.54E-56 | -1.69E-46 |
| MS.gene05415 | MS.gene80641 | 0.806246 | 9.03E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene80641 | 0.824736 | 6.87E-54 | -1.69E-46 |
| MS.gene054291 | MS.gene80641 | -0.836519 | 8.92E-57 | -1.69E-46 |
| MS.gene054468 | MS.gene80641 | 0.82691 | 2.09E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene80641 | 0.830862 | 2.31E-55 | -1.69E-46 |
| MS.gene054775 | MS.gene80641 | 0.818475 | 1.92E-52 | -1.69E-46 |
| MS.gene055228 | MS.gene80641 | 0.811766 | 5.94E-51 | -1.69E-46 |
| MS.gene055586 | MS.gene80641 | 0.805489 | 1.30E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene80641 | 0.831752 | 1.40E-55 | -1.69E-46 |
| MS.gene055818 | MS.gene80641 | 0.822287 | 2.57E-53 | -1.69E-46 |
| MS.gene055926 | MS.gene80641 | 0.834916 | 2.27E-56 | -1.69E-46 |
| MS.gene056162 | MS.gene80641 | 0.820591 | 6.33E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene80641 | 0.813235 | 2.84E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene80641 | 0.804264 | 2.35E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene80641 | 0.835504 | 1.61E-56 | -1.69E-46 |
| MS.gene057194 | MS.gene80641 | 0.816663 | 4.92E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene80641 | 0.81464 | 1.39E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene80641 | 0.818478 | 1.92E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene80641 | 0.812095 | 5.04E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene80641 | 0.821492 | 3.92E-53 | -1.69E-46 |
| MS.gene059272 | MS.gene80641 | 0.80507 | 1.59E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene80641 | 0.826986 | 2.01E-54 | -1.69E-46 |
| MS.gene060322 | MS.gene80641 | 0.847692 | 9.85E-60 | -1.69E-46 |
| MS.gene06052 | MS.gene80641 | 0.828729 | 7.64E-55 | -1.69E-46 |
| MS.gene061040 | MS.gene80641 | -0.815422 | 9.32E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80641.t1 | MTR_5g081740 | 95.307 | 277 | 12 | 1 | 1 | 276 | 21 | 297 | 0.0 | 522 |
| MS.gene80641.t1 | MTR_5g081740 | 96.209 | 211 | 7 | 1 | 1 | 210 | 21 | 231 | 2.32e-148 | 414 |
| MS.gene80641.t1 | MTR_5g081740 | 96.209 | 211 | 7 | 1 | 1 | 210 | 21 | 231 | 8.58e-148 | 413 |
| MS.gene80641.t1 | MTR_3g070090 | 62.409 | 274 | 96 | 2 | 5 | 273 | 28 | 299 | 9.84e-124 | 355 |
| MS.gene80641.t1 | MTR_5g081740 | 96.622 | 148 | 4 | 1 | 1 | 147 | 21 | 168 | 2.23e-101 | 293 |
| MS.gene80641.t1 | MTR_7g092870 | 94.531 | 128 | 7 | 0 | 1 | 128 | 21 | 148 | 2.60e-78 | 234 |
| MS.gene80641.t1 | MTR_7g092875 | 91.753 | 97 | 8 | 0 | 164 | 260 | 1 | 97 | 3.99e-61 | 188 |
| MS.gene80641.t1 | MTR_8g046260 | 28.302 | 212 | 138 | 5 | 66 | 266 | 47 | 255 | 1.19e-19 | 86.3 |
| MS.gene80641.t1 | MTR_1g073610 | 25.943 | 212 | 146 | 5 | 64 | 266 | 40 | 249 | 7.86e-18 | 80.9 |
| MS.gene80641.t1 | MTR_6g090070 | 26.761 | 213 | 144 | 4 | 64 | 266 | 38 | 248 | 1.13e-16 | 77.8 |
| MS.gene80641.t1 | MTR_1g045120 | 23.600 | 250 | 164 | 8 | 31 | 266 | 14 | 250 | 2.89e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80641.t1 | AT2G39920 | 39.706 | 272 | 141 | 5 | 1 | 268 | 23 | 275 | 2.23e-59 | 190 |
| MS.gene80641.t1 | AT2G39920 | 39.706 | 272 | 141 | 5 | 1 | 268 | 23 | 275 | 2.23e-59 | 190 |
| MS.gene80641.t1 | AT2G39920 | 39.706 | 272 | 141 | 5 | 1 | 268 | 23 | 275 | 2.23e-59 | 190 |
| MS.gene80641.t1 | AT2G39920 | 39.338 | 272 | 141 | 5 | 1 | 268 | 23 | 274 | 7.28e-59 | 189 |
| MS.gene80641.t1 | AT4G29270 | 33.178 | 214 | 129 | 6 | 64 | 266 | 42 | 252 | 2.21e-26 | 104 |
| MS.gene80641.t1 | AT4G29260 | 29.778 | 225 | 130 | 7 | 60 | 266 | 37 | 251 | 3.80e-18 | 82.0 |
| MS.gene80641.t1 | AT4G25150 | 24.715 | 263 | 167 | 7 | 28 | 266 | 1 | 256 | 2.09e-17 | 80.1 |
| MS.gene80641.t1 | AT5G51260 | 25.926 | 189 | 120 | 4 | 65 | 238 | 44 | 227 | 3.56e-15 | 73.9 |
| MS.gene80641.t1 | AT5G44020 | 24.017 | 229 | 157 | 7 | 52 | 266 | 43 | 268 | 3.34e-14 | 71.2 |
| MS.gene80641.t1 | AT1G04040 | 23.605 | 233 | 162 | 6 | 48 | 266 | 37 | 267 | 9.95e-13 | 67.0 |
Find 38 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATGCTAAGCTCAATAATT+TGG | 0.240869 | 5.4:-64431280 | MS.gene80641:CDS |
| AAGGAATGTGATACAGAAAA+AGG | 0.244662 | 5.4:-64429857 | MS.gene80641:CDS |
| GTTGATTGATGGTGACATTT+TGG | 0.278987 | 5.4:+64430311 | None:intergenic |
| AAATTACCTTAGTAACAAAT+TGG | 0.311682 | 5.4:+64431065 | None:intergenic |
| CTTGTTGATGCTGGATTTAG+AGG | 0.329191 | 5.4:-64430289 | MS.gene80641:CDS |
| ATTGCTGGATTTGCAGCTCT+TGG | 0.339380 | 5.4:-64431429 | MS.gene80641:CDS |
| GTAATCCTCAATCACAGATT+TGG | 0.344974 | 5.4:+64431173 | None:intergenic |
| TCTGCAACAATCTTCATTGC+TGG | 0.362031 | 5.4:-64431444 | MS.gene80641:CDS |
| ATTCTTCCAATTTGTTACTA+AGG | 0.365366 | 5.4:-64431071 | MS.gene80641:intron |
| AGTCACTTTGTTGGTTTCAA+TGG | 0.374169 | 5.4:-64431397 | MS.gene80641:CDS |
| GGCTCAAACATGTCACATAT+AGG | 0.417441 | 5.4:+64429742 | None:intergenic |
| ATCAATCAACTTGTTGATGC+TGG | 0.420104 | 5.4:-64430298 | MS.gene80641:CDS |
| AGCATCAACAAGTTGATTGA+TGG | 0.423312 | 5.4:+64430300 | None:intergenic |
| GCTCAAACATGTCACATATA+GGG | 0.427523 | 5.4:+64429743 | None:intergenic |
| GCCAGGTCTTTACAAATGTT+AGG | 0.429891 | 5.4:+64431243 | None:intergenic |
| TAGACCAACCACTAGCTTGA+AGG | 0.432274 | 5.4:+64430365 | None:intergenic |
| ACTGTTACAGATGCAGATAC+AGG | 0.440440 | 5.4:-64429790 | MS.gene80641:CDS |
| TCATGTCAAAATAGCAATGC+TGG | 0.451480 | 5.4:-64431360 | MS.gene80641:CDS |
| TTGATGCTGGATTTAGAGGC+TGG | 0.460574 | 5.4:-64430285 | MS.gene80641:CDS |
| TTCAACCAAATCTGTGATTG+AGG | 0.476332 | 5.4:-64431178 | MS.gene80641:CDS |
| AGTAACAAATTGGAAGAATG+AGG | 0.486000 | 5.4:+64431075 | None:intergenic |
| GTGATTGAGGATTACTTCAA+TGG | 0.491347 | 5.4:-64431165 | MS.gene80641:CDS |
| AACATGTCACATATAGGGTC+TGG | 0.494617 | 5.4:+64429748 | None:intergenic |
| GGTGTTAAACCATCAGAAGA+TGG | 0.502777 | 5.4:-64431144 | MS.gene80641:CDS |
| ATGCTGGAATTGTTGAGCTT+AGG | 0.504865 | 5.4:-64431344 | MS.gene80641:CDS |
| CTTTGATATATTGTAAAGCC+AGG | 0.529642 | 5.4:+64431226 | None:intergenic |
| TCCTAACATTTGTAAAGACC+TGG | 0.529775 | 5.4:-64431244 | MS.gene80641:CDS |
| TGGTCAATATGCAAGAGACT+TGG | 0.581585 | 5.4:-64431202 | MS.gene80641:CDS |
| TACAAGAACCTTCAAGCTAG+TGG | 0.590030 | 5.4:-64430373 | MS.gene80641:CDS |
| ACATCAAAACCATCTTCTGA+TGG | 0.590480 | 5.4:+64431135 | None:intergenic |
| GCTGGTCTTCATTGCTGATG+AGG | 0.591699 | 5.4:-64430267 | MS.gene80641:intron |
| AAGTATCATAAGCAGTCATG+TGG | 0.611564 | 5.4:-64429821 | MS.gene80641:CDS |
| TGAGCCTCAGAGGAGAGCAT+AGG | 0.617171 | 5.4:-64429725 | None:intergenic |
| CTGGCTTTACAATATATCAA+AGG | 0.617801 | 5.4:-64431225 | MS.gene80641:CDS |
| AGCACCTATGCTCTCCTCTG+AGG | 0.619362 | 5.4:+64429721 | None:intergenic |
| AGAACCTTCAAGCTAGTGGT+TGG | 0.622868 | 5.4:-64430369 | MS.gene80641:CDS |
| GCTTTACAATATATCAAAGG+TGG | 0.628623 | 5.4:-64431222 | MS.gene80641:CDS |
| GTGACATGTTTGAGCCTCAG+AGG | 0.633336 | 5.4:-64429735 | MS.gene80641:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTAGTTAAGTTTT+TGG | - | chr5.4:64430198-64430217 | MS.gene80641:intron | 10.0% |
| !!! | TAATTTTATCATTTAAGATT+TGG | - | chr5.4:64430170-64430189 | MS.gene80641:intron | 10.0% |
| !!! | TTTTTATTAGTTAAGTTTTT+GGG | - | chr5.4:64430199-64430218 | MS.gene80641:intron | 10.0% |
| !!! | TTTAACATTATCTAGAATTA+AGG | + | chr5.4:64430545-64430564 | None:intergenic | 15.0% |
| !! | AAATTACCTTAGTAACAAAT+TGG | + | chr5.4:64430156-64430175 | None:intergenic | 20.0% |
| !! | TATCTATAAAACAACATTTG+TGG | + | chr5.4:64431021-64431040 | None:intergenic | 20.0% |
| !!! | ATGAATATTTTTCTAGACAA+AGG | - | chr5.4:64431342-64431361 | MS.gene80641:CDS | 20.0% |
| !!! | TGTTGTTTTATAGATATCTA+AGG | - | chr5.4:64431025-64431044 | MS.gene80641:intron | 20.0% |
| ! | ATGAAATTACATCTTCAAAG+TGG | + | chr5.4:64430442-64430461 | None:intergenic | 25.0% |
| ! | ATTAGTAAACTAATGCAAGT+TGG | + | chr5.4:64430628-64430647 | None:intergenic | 25.0% |
| ! | TCTGCAAAAATAGAACATAT+TGG | + | chr5.4:64431294-64431313 | None:intergenic | 25.0% |
| ! | TTTACTAATATTGCAAAACC+AGG | + | chr5.4:64430377-64430396 | None:intergenic | 25.0% |
| !! | AACCATTATCTAGGATATAT+GGG | + | chr5.4:64430989-64431008 | None:intergenic | 25.0% |
| !! | TCTAGAATTAAGGTACATAA+TGG | + | chr5.4:64430535-64430554 | None:intergenic | 25.0% |
| !!! | ACATAGATAGTCTTTTTCAA+TGG | - | chr5.4:64430117-64430136 | MS.gene80641:intron | 25.0% |
| !!! | ACTTTTATTAGTCACTTTGT+TGG | - | chr5.4:64429812-64429831 | MS.gene80641:CDS | 25.0% |
| !!! | ATTCTTCCAATTTGTTACTA+AGG | - | chr5.4:64430147-64430166 | MS.gene80641:intron | 25.0% |
| !!! | TTAGTTAAGTTTTTGGGATT+TGG | - | chr5.4:64430205-64430224 | MS.gene80641:intron | 25.0% |
| AAAGTACATGTTTGGATTGA+CGG | - | chr5.4:64431125-64431144 | MS.gene80641:CDS | 30.0% | |
| AACATGTCACATATACTTTG+TGG | + | chr5.4:64431206-64431225 | None:intergenic | 30.0% | |
| AAGGAATGTGATACAGAAAA+AGG | - | chr5.4:64431361-64431380 | MS.gene80641:CDS | 30.0% | |
| ACAGATAAATGCTAAGATCT+AGG | - | chr5.4:64430566-64430585 | MS.gene80641:intron | 30.0% | |
| AGGAATGTGATACAGAAAAA+GGG | - | chr5.4:64431362-64431381 | MS.gene80641:CDS | 30.0% | |
| AGTAACAAATTGGAAGAATG+AGG | + | chr5.4:64430146-64430165 | None:intergenic | 30.0% | |
| ATTCTTGACTGCAAGTAATT+CGG | - | chr5.4:64430349-64430368 | MS.gene80641:CDS | 30.0% | |
| CTTTGATATATTGTAAAGCC+AGG | + | chr5.4:64429995-64430014 | None:intergenic | 30.0% | |
| GCTTTACAATATATCAAAGG+TGG | - | chr5.4:64429996-64430015 | MS.gene80641:intron | 30.0% | |
| GGATTTGGATTTCATTTAGT+CGG | - | chr5.4:64430220-64430239 | MS.gene80641:intron | 30.0% | |
| TCGATTACAAAGTACATGTT+TGG | - | chr5.4:64431117-64431136 | MS.gene80641:CDS | 30.0% | |
| TCTCATACTTTGTGTATGTT+TGG | + | chr5.4:64431254-64431273 | None:intergenic | 30.0% | |
| ! | AACTTGACAAGGTTTTCTTT+TGG | - | chr5.4:64430742-64430761 | MS.gene80641:intron | 30.0% |
| ! | ACATATTGGTGCTTAAAATC+TGG | + | chr5.4:64431280-64431299 | None:intergenic | 30.0% |
| ! | CAACCATTATCTAGGATATA+TGG | + | chr5.4:64430990-64431009 | None:intergenic | 30.0% |
| ! | CATATATCCTAGATAATGGT+TGG | - | chr5.4:64430988-64431007 | MS.gene80641:intron | 30.0% |
| ! | TTTTTCTCCAACCATTATCT+AGG | + | chr5.4:64430998-64431017 | None:intergenic | 30.0% |
| !! | ATTTTGTTATCAAGAGAGTC+AGG | - | chr5.4:64430878-64430897 | MS.gene80641:intron | 30.0% |
| !! | CTGGCTTTACAATATATCAA+AGG | - | chr5.4:64429993-64430012 | MS.gene80641:intron | 30.0% |
| !! | TTAAGGTACATAATGGATAG+AGG | + | chr5.4:64430528-64430547 | None:intergenic | 30.0% |
| AAGTATCATAAGCAGTCATG+TGG | - | chr5.4:64431397-64431416 | MS.gene80641:CDS | 35.0% | |
| ACATCAAAACCATCTTCTGA+TGG | + | chr5.4:64430086-64430105 | None:intergenic | 35.0% | |
| CAATGAGTTTGGCAAAATCA+CGG | + | chr5.4:64431178-64431197 | None:intergenic | 35.0% | |
| CACCCATATATCCTAGATAA+TGG | - | chr5.4:64430984-64431003 | MS.gene80641:intron | 35.0% | |
| GCATGCTAAGCTCAATAATT+TGG | - | chr5.4:64429938-64429957 | MS.gene80641:intron | 35.0% | |
| GCTCAAACATGTCACATATA+GGG | + | chr5.4:64431478-64431497 | None:intergenic | 35.0% | |
| GTAATCCTCAATCACAGATT+TGG | + | chr5.4:64430048-64430067 | None:intergenic | 35.0% | |
| GTGATTGAGGATTACTTCAA+TGG | - | chr5.4:64430053-64430072 | MS.gene80641:intron | 35.0% | |
| TATGCAGATTAGCATCAATC+TGG | + | chr5.4:64430709-64430728 | None:intergenic | 35.0% | |
| TCATGTCAAAATAGCAATGC+TGG | - | chr5.4:64429858-64429877 | MS.gene80641:CDS | 35.0% | |
| TCCTAACATTTGTAAAGACC+TGG | - | chr5.4:64429974-64429993 | MS.gene80641:intron | 35.0% | |
| TGATACAGAAAAAGGGTTTC+AGG | - | chr5.4:64431369-64431388 | MS.gene80641:CDS | 35.0% | |
| TTCAACCAAATCTGTGATTG+AGG | - | chr5.4:64430040-64430059 | MS.gene80641:intron | 35.0% | |
| TTGTGGATGAACAATGAGTT+TGG | + | chr5.4:64431189-64431208 | None:intergenic | 35.0% | |
| TTGTTAGCAGTAACTTGACA+AGG | - | chr5.4:64430731-64430750 | MS.gene80641:intron | 35.0% | |
| ! | CATTATCTAGGATATATGGG+TGG | + | chr5.4:64430986-64431005 | None:intergenic | 35.0% |
| !! | AACGGTCTGAATTTTGAGTA+TGG | + | chr5.4:64430308-64430327 | None:intergenic | 35.0% |
| !! | ACAAGGTTTTCTTTTGGTGT+TGG | - | chr5.4:64430748-64430767 | MS.gene80641:intron | 35.0% |
| !! | AGCATCAACAAGTTGATTGA+TGG | + | chr5.4:64430921-64430940 | None:intergenic | 35.0% |
| !! | AGTCACTTTGTTGGTTTCAA+TGG | - | chr5.4:64429821-64429840 | MS.gene80641:CDS | 35.0% |
| !! | ATCAATCAACTTGTTGATGC+TGG | - | chr5.4:64430920-64430939 | MS.gene80641:intron | 35.0% |
| !!! | ATCAGAAGATGGTTTTGATG+TGG | - | chr5.4:64430085-64430104 | MS.gene80641:intron | 35.0% |
| !!! | GTTGATTGATGGTGACATTT+TGG | + | chr5.4:64430910-64430929 | None:intergenic | 35.0% |
| AACATGTCACATATAGGGTC+TGG | + | chr5.4:64431473-64431492 | None:intergenic | 40.0% | |
| ACTGTTACAGATGCAGATAC+AGG | - | chr5.4:64431428-64431447 | MS.gene80641:CDS | 40.0% | |
| ATGCTGGAATTGTTGAGCTT+AGG | - | chr5.4:64429874-64429893 | MS.gene80641:CDS | 40.0% | |
| CACGGTTAGAAAAAGACGAA+CGG | + | chr5.4:64430326-64430345 | None:intergenic | 40.0% | |
| CGGAAAACTTAAAGTCGAGA+CGG | - | chr5.4:64430240-64430259 | MS.gene80641:intron | 40.0% | |
| CTTGCAGTCAAGAATCTACA+CGG | + | chr5.4:64430344-64430363 | None:intergenic | 40.0% | |
| CTTGTTGATGCTGGATTTAG+AGG | - | chr5.4:64430929-64430948 | MS.gene80641:intron | 40.0% | |
| GCCAGGTCTTTACAAATGTT+AGG | + | chr5.4:64429978-64429997 | None:intergenic | 40.0% | |
| GGCTCAAACATGTCACATAT+AGG | + | chr5.4:64431479-64431498 | None:intergenic | 40.0% | |
| GGTGTTAAACCATCAGAAGA+TGG | - | chr5.4:64430074-64430093 | MS.gene80641:intron | 40.0% | |
| TACAAGAACCTTCAAGCTAG+TGG | - | chr5.4:64430845-64430864 | MS.gene80641:intron | 40.0% | |
| TCTGCAACAATCTTCATTGC+TGG | - | chr5.4:64429774-64429793 | MS.gene80641:CDS | 40.0% | |
| TGGTCAATATGCAAGAGACT+TGG | - | chr5.4:64430016-64430035 | MS.gene80641:intron | 40.0% | |
| !! | AGCAGTTTTGTGCTTGAATC+AGG | - | chr5.4:64429732-64429751 | MS.gene80641:CDS | 40.0% |
| ACTGCAAGTAATTCGGATCC+TGG | - | chr5.4:64430356-64430375 | MS.gene80641:CDS | 45.0% | |
| AGAACCTTCAAGCTAGTGGT+TGG | - | chr5.4:64430849-64430868 | MS.gene80641:intron | 45.0% | |
| ATTGCTGGATTTGCAGCTCT+TGG | - | chr5.4:64429789-64429808 | MS.gene80641:CDS | 45.0% | |
| TGAGTTTGGCAAAATCACGG+TGG | + | chr5.4:64431175-64431194 | None:intergenic | 45.0% | |
| TTGATGCTGGATTTAGAGGC+TGG | - | chr5.4:64430933-64430952 | MS.gene80641:intron | 45.0% | |
| ! | ATGCTAAGATCTAGGACAGC+TGG | - | chr5.4:64430574-64430593 | MS.gene80641:intron | 45.0% |
| ! | TAGACCAACCACTAGCTTGA+AGG | + | chr5.4:64430856-64430875 | None:intergenic | 45.0% |
| GTGACATGTTTGAGCCTCAG+AGG | - | chr5.4:64431483-64431502 | MS.gene80641:CDS | 50.0% | |
| !! | GCTGGTCTTCATTGCTGATG+AGG | - | chr5.4:64430951-64430970 | MS.gene80641:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 64429726 | 64431514 | 64429726 | ID=MS.gene80641 |
| chr5.4 | mRNA | 64429726 | 64431514 | 64429726 | ID=MS.gene80641.t1;Parent=MS.gene80641 |
| chr5.4 | exon | 64431072 | 64431514 | 64431072 | ID=MS.gene80641.t1.exon1;Parent=MS.gene80641.t1 |
| chr5.4 | CDS | 64431072 | 64431514 | 64431072 | ID=cds.MS.gene80641.t1;Parent=MS.gene80641.t1 |
| chr5.4 | exon | 64430268 | 64430453 | 64430268 | ID=MS.gene80641.t1.exon2;Parent=MS.gene80641.t1 |
| chr5.4 | CDS | 64430268 | 64430453 | 64430268 | ID=cds.MS.gene80641.t1;Parent=MS.gene80641.t1 |
| chr5.4 | exon | 64429726 | 64429927 | 64429726 | ID=MS.gene80641.t1.exon3;Parent=MS.gene80641.t1 |
| chr5.4 | CDS | 64429726 | 64429927 | 64429726 | ID=cds.MS.gene80641.t1;Parent=MS.gene80641.t1 |
| Gene Sequence |
| Protein sequence |
