AlfalfaGEDB | MS.gene81079

M. sativa cultivar XinJiangDaYe / MS.gene81079

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81079.t1	XP_024628015.1	92	348	20	4	1	341	171	517	5.20E-146	527.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81079.t1	Q6EU30	65.6	160	48	4	1	158	95	249	8.3e-52	205.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81079.t1	A0A072TYC0	92.0	348	20	4	1	341	171	517	3.7e-146	527.3

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene81079.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050426	MS.gene81079	-0.830336	3.11E-55	-1.69E-46
MS.gene050464	MS.gene81079	0.802086	6.63E-49	-1.69E-46
MS.gene050670	MS.gene81079	0.844221	8.65E-59	-1.69E-46
MS.gene050971	MS.gene81079	0.917521	4.80E-86	-1.69E-46
MS.gene051525	MS.gene81079	0.809019	2.33E-50	-1.69E-46
MS.gene051860	MS.gene81079	0.814817	1.27E-51	-1.69E-46
MS.gene051983	MS.gene81079	0.816466	5.45E-52	-1.69E-46
MS.gene052011	MS.gene81079	-0.852441	4.61E-61	-1.69E-46
MS.gene052077	MS.gene81079	0.846086	2.71E-59	-1.69E-46
MS.gene052128	MS.gene81079	-0.810473	1.13E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81079.t1	MTR_8g023990	95.402	348	8	4	1	341	171	517	0.0	680
MS.gene81079.t1	MTR_7g117455	90.654	107	10	0	1	107	117	223	5.23e-65	213
MS.gene81079.t1	MTR_5g053920	67.227	119	29	2	1	111	194	310	8.81e-48	165
MS.gene81079.t1	MTR_1g058350	70.642	109	28	2	1	107	75	181	1.08e-46	161
MS.gene81079.t1	MTR_7g105370	73.333	105	25	2	6	110	65	166	1.17e-46	160
MS.gene81079.t1	MTR_1g093600	63.333	120	29	2	1	107	191	308	1.96e-42	151
MS.gene81079.t1	MTR_1g116920	57.303	89	35	1	1	89	161	246	8.96e-28	110
MS.gene81079.t1	MTR_4g028130	36.134	119	68	4	1	117	314	426	1.72e-15	78.2
MS.gene81079.t1	MTR_4g028130	36.134	119	68	4	1	117	314	426	1.76e-15	77.8
MS.gene81079.t1	MTR_4g028130	37.273	110	61	4	1	108	314	417	5.45e-15	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene81079.t1	AT2G46870	48.421	285	83	9	1	284	34	255	9.52e-73	228
MS.gene81079.t1	AT1G01030	45.066	304	104	9	1	292	55	307	5.60e-65	209
MS.gene81079.t1	AT3G61970	46.290	283	71	11	1	280	22	226	9.29e-62	199
MS.gene81079.t1	AT1G01030	85.047	107	15	1	1	106	55	161	4.81e-60	196
MS.gene81079.t1	AT4G01500	61.486	148	42	3	1	135	35	180	3.05e-50	171
MS.gene81079.t1	AT3G11580	67.521	117	25	2	1	106	28	142	1.26e-48	163
MS.gene81079.t1	AT3G11580	67.521	117	25	2	1	106	28	142	1.26e-48	163
MS.gene81079.t1	AT3G11580	67.521	117	25	2	1	106	28	142	1.26e-48	163
MS.gene81079.t1	AT3G11580	67.521	117	25	2	1	106	28	142	3.61e-48	163
MS.gene81079.t1	AT1G68840	71.560	109	27	2	1	107	187	293	1.26e-47	164

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Find 57 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCATCTGATTGTGTA+AGG	0.380849	8.4:-71032335	None:intergenic
AAATTCATCTGATTGTGTAA+GGG	0.552187	8.4:-71032334	None:intergenic
AACAACAATATTCTATTAGA+TGG	0.265622	8.4:+71032230	MS.gene81079:CDS
AACATCAACAAGATTTGAAG+AGG	0.552072	8.4:+71032768	MS.gene81079:CDS
AACCTTTGTGGTGTTGGATA+AGG	0.473019	8.4:-71032283	None:intergenic
AAGATAGAAATGGAAAATTG+TGG	0.489600	8.4:+71031972	MS.gene81079:CDS
AAGGTTGTTTGGTGTGAACA+TGG	0.542303	8.4:+71032648	MS.gene81079:CDS
AATTCATCTGATTGTGTAAG+GGG	0.516476	8.4:-71032333	None:intergenic
ACAACAATATTCTATTAGAT+GGG	0.482618	8.4:+71032231	MS.gene81079:CDS
ACAAGACAGCAACAAGAAGG+AGG	0.633565	8.4:+71032499	MS.gene81079:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGAAAAAACTTGATGC+TGG	+	chr8.4:71032064-71032083	MS.gene81079:CDS	30.0%
AACATCAACAAGATTTGAAG+AGG	+	chr8.4:71032768-71032787	MS.gene81079:CDS	30.0%
AATTCATCTGATTGTGTAAG+GGG	-	chr8.4:71032336-71032355	None:intergenic	30.0%
ATAGGTTGTTTATAGATTGG+AGG	+	chr8.4:71032131-71032150	MS.gene81079:CDS	30.0%
GATTCAACATCAAATGAGAA+AGG	+	chr8.4:71031932-71031951	MS.gene81079:CDS	30.0%
GGAGATTTAGATACTCTTAT+TGG	+	chr8.4:71031993-71032012	MS.gene81079:CDS	30.0%
TCATTTGATGTTGAATCAAG+TGG	-	chr8.4:71031929-71031948	None:intergenic	30.0%
TTCAACAAGTGATGATAACT+TGG	+	chr8.4:71032687-71032706	MS.gene81079:CDS	30.0%
TTTCCATTTCATCAATATGG+TGG	+	chr8.4:71032370-71032389	MS.gene81079:CDS	30.0%
ACCATCACTTCAACATTTGA+AGG	+	chr8.4:71032729-71032748	MS.gene81079:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	71031842	71032867	71031842	ID=MS.gene81079
chr8.4	mRNA	71031842	71032867	71031842	ID=MS.gene81079.t1;Parent=MS.gene81079
chr8.4	exon	71031842	71032867	71031842	ID=MS.gene81079.t1.exon1;Parent=MS.gene81079.t1
chr8.4	CDS	71031842	71032867	71031842	ID=cds.MS.gene81079.t1;Parent=MS.gene81079.t1

Gene Sequence

>MS.gene81079

ATGTTTGACAAAGTTGTAACACCAAGTGATGTTGGGAAACTAAACCGTTTGGTTATACCAAAACAACATGCTGAAAAGTATTTTCCACTTGATTCAACATCAAATGAGAAAGGTCTTCTTCTGAATTTTGAAGATAGAAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAACAGTAGCCAAAGCTATGTCATGACAAAAGGTTGGAGCCGTTTTGTTAAAGAGAAAAAACTTGATGCTGGTGACATTGTTTCATTTCAACGCGGCGTCGGCGAATTGTTTAGGCATAGGTTGTTTATAGATTGGAGGAGAAGATCTAATCATAATCATCATAATATTGATCCTTCATCAGCAACACTTTTCACTCCTTTCTTTCTTCCTAATCAACAACAATATTCTATTAGATGGGGAGGTGCTAATAGTAGATTTTACTCTCTTCCTTATCCAACACCACAAAGGTTACAACATCAGCAACAAAATCATCATGACCCCTTACACAATCAGATGAATTTTAATCATAACATGTTTCCATTTCATCAATATGGTGGTGGAAATGTGAATCATCAATACAATTTTCATCATCATGATCCAAGTTCAGTTTTTTATATGAGATCATTACCAGCACCATCATCAATGCCTCAAGGAAGCTTGAGTACAAGACAGCAACAAGAAGGAGGAGGAGGAGGAAGCAATGTCTCAAACATGATTATTGATTCTGTTCCTGTTTCTCATTATCATCATCACCATGGAAATTTAACTAGTAATGCTACTACTAGTACTACTAATGGTGCTGCAAAAAGGTTAAGGTTGTTTGGTGTGAACATGGAGTGTGGTGGTTCTTCTTCAACAAGTGATGATAACTTGGCTTCTCCTTCTTCAATAGTACCATCACTTCAACATTTGAAGGTACCTCATCATGAAGAAACATCAACAAGATTTGAAGAGGATAAGAGAAGAGAAGAAGCTTCAATGATTTTTGGTTTAGATACTTCTTTGCAATATCATAATTACCAACAACAATGA

Protein sequence

>MS.gene81079.t1

MFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELFRHRLFIDWRRRSNHNHHNIDPSSATLFTPFFLPNQQQYSIRWGGANSRFYSLPYPTPQRLQHQQQNHHDPLHNQMNFNHNMFPFHQYGGGNVNHQYNFHHHDPSSVFYMRSLPAPSSMPQGSLSTRQQQEGGGGGSNVSNMIIDSVPVSHYHHHHGNLTSNATTSTTNGAAKRLRLFGVNMECGGSSSTSDDNLASPSSIVPSLQHLKVPHHEETSTRFEEDKRREEASMIFGLDTSLQYHNYQQQ