AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82306


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82306.t1 MTR_3g027870 84.698 281 10 3 1 251 1 278 1.71e-163 453
MS.gene82306.t1 MTR_3g027870 70.463 281 10 4 1 251 1 238 1.01e-128 364
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82306.t1 AT5G26880 74.272 206 52 1 45 250 58 262 7.33e-115 330

Find 52 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTAAAATTCACGATTCT+TGG 0.300968 3.4:+21858361 MS.gene82306:CDS
CTGTTGGACTACACTTAGTT+GGG 0.340052 3.4:+21856969 MS.gene82306:CDS
TTGCAATCTAACAACGCTTC+AGG 0.351137 3.4:-21859143 None:intergenic
CAATCCAGCTCGCTTTAGTT+TGG 0.371247 3.4:-21857325 None:intergenic
TGTTGTTCTTGGTAGATTCC+AGG 0.384664 3.4:+21856908 MS.gene82306:intron
GCAATGCAGCCAGTGTTTCC+TGG 0.391133 3.4:-21856926 None:intergenic
CTGACATATGTTTCAACCAT+TGG 0.414032 3.4:-21859200 None:intergenic
GTTTGGATCGAAAATGAAAA+GGG 0.415927 3.4:-21853119 None:intergenic
TGTTAAAATTCACGATTCTT+GGG 0.421970 3.4:+21858362 MS.gene82306:CDS
AGTTGTGCTTGTTTCACCTC+AGG 0.425774 3.4:+21853547 MS.gene82306:CDS
CAAACTAAAGCGAGCTGGAT+TGG 0.426885 3.4:+21857326 MS.gene82306:CDS
TTATTTGGTGCTGAAACTAC+TGG 0.427265 3.4:+21859113 MS.gene82306:CDS
TCATCCACCTTATATCCTAA+TGG 0.433769 3.4:-21857300 None:intergenic
AGTCTCAAGGCAGCAGGAAA+TGG 0.436330 3.4:-21853063 None:intergenic
CTGCTGCTGCTGATAGGTTG+AGG 0.439569 3.4:-21853092 None:intergenic
TGCTGCTGCTGATAGGTTGA+GGG 0.443253 3.4:-21853091 None:intergenic
GGTTTGCTGCTGCTGCTGAT+AGG 0.443334 3.4:-21853098 None:intergenic
GCTGTTGGACTACACTTAGT+TGG 0.447539 3.4:+21856968 MS.gene82306:CDS
AGCGAGCTGGATTGGACTAC+TGG 0.454007 3.4:+21857334 MS.gene82306:CDS
TTGATAGTTCCACCACCATA+TGG 0.454641 3.4:-21859173 None:intergenic
AGTTTGGATCGAAAATGAAA+AGG 0.457319 3.4:-21853120 None:intergenic
TGACATATGTTTCAACCATT+GGG 0.461962 3.4:-21859199 None:intergenic
TTGCCACATGGTGTTGGAGA+GGG 0.501044 3.4:+21853491 MS.gene82306:CDS
AAAATTCACGATTCTTGGGA+AGG 0.519743 3.4:+21858366 MS.gene82306:CDS
GAGAATGAGATAAAGAAGGA+AGG 0.522409 3.4:+21853464 MS.gene82306:CDS
TGGTACAGGAAGGTGAAAAG+AGG 0.523032 3.4:+21858490 MS.gene82306:intron
GGTAGTTTGCCACATGGTGT+TGG 0.523607 3.4:+21853485 MS.gene82306:CDS
GATTGCAAAACTGAACCATA+TGG 0.527813 3.4:+21859158 MS.gene82306:CDS
CAATGGTTGAAACATATGTC+AGG 0.541341 3.4:+21859201 MS.gene82306:CDS
GATTTCAGTCTCAAGGCAGC+AGG 0.543360 3.4:-21853069 None:intergenic
ACATGTGCAGCATCAGCTGT+TGG 0.543758 3.4:+21856953 MS.gene82306:CDS
TGCCACATGGTGTTGGAGAG+GGG 0.544512 3.4:+21853492 MS.gene82306:CDS
TACTGAGAATGAGATAAAGA+AGG 0.549122 3.4:+21853460 MS.gene82306:CDS
GTTGCTAGCATTTACAAAGA+GGG 0.563609 3.4:+21858512 MS.gene82306:CDS
GTTGAGGGATTTCAGTCTCA+AGG 0.564510 3.4:-21853076 None:intergenic
TTGAATCTATCAGTAAGTGT+TGG 0.576824 3.4:+21859227 MS.gene82306:CDS
CAATCTAACAACGCTTCAGG+TGG 0.577296 3.4:-21859140 None:intergenic
TGGTAGATTCCAGGAAACAC+TGG 0.577588 3.4:+21856917 MS.gene82306:intron
GATACCAAACTAAAGCGAGC+TGG 0.587642 3.4:+21857321 MS.gene82306:CDS
GGTTGCTAGCATTTACAAAG+AGG 0.596965 3.4:+21858511 MS.gene82306:CDS
TTGCTAGCATTTACAAAGAG+GGG 0.609702 3.4:+21858513 MS.gene82306:CDS
GTATCAATACATGTTTCTGA+AGG 0.615847 3.4:-21859302 None:intergenic
TGTTGGACTACACTTAGTTG+GGG 0.616424 3.4:+21856970 MS.gene82306:CDS
TTTGCCACATGGTGTTGGAG+AGG 0.620773 3.4:+21853490 MS.gene82306:CDS
TCAGCCATTAGGATATAAGG+TGG 0.622589 3.4:+21857296 MS.gene82306:intron
AGAAACATGTATTGATACTG+AGG 0.626640 3.4:+21859307 MS.gene82306:CDS
ATCCCCTCTCCAACACCATG+TGG 0.662675 3.4:-21853494 None:intergenic
AACATGTATTGATACTGAGG+AGG 0.664583 3.4:+21859310 MS.gene82306:CDS
TGGAACTATCAAGATCCCAA+TGG 0.684890 3.4:+21859184 MS.gene82306:CDS
AAAACTGAACCATATGGTGG+TGG 0.685342 3.4:+21859164 MS.gene82306:CDS
AAGGAAGGTAGTTTGCCACA+TGG 0.704326 3.4:+21853479 MS.gene82306:CDS
TGCAAAACTGAACCATATGG+TGG 0.723796 3.4:+21859161 MS.gene82306:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGCTTATTAATTTAATT+AGG + chr3.4:21855292-21855311 MS.gene82306:intron 10.0%
!! CAAAAACTTTATAAAATTAA+AGG + chr3.4:21854347-21854366 MS.gene82306:intron 10.0%
!!! AGTTTTTTTATGAATATTAT+CGG + chr3.4:21856341-21856360 MS.gene82306:intron 10.0%
!!! TTTTATAATGAATAAAGAAT+TGG - chr3.4:21858694-21858713 None:intergenic 10.0%
!! AAATGTAATATACTCATATA+CGG - chr3.4:21855364-21855383 None:intergenic 15.0%
!! AAATTTGATACAATACTTAT+AGG + chr3.4:21858768-21858787 MS.gene82306:intron 15.0%
!! AACTGAAATAATAATAATTG+TGG - chr3.4:21855451-21855470 None:intergenic 15.0%
!! AGTAAAATTTAACAAAGTTA+GGG - chr3.4:21853767-21853786 None:intergenic 15.0%
!! ATAGATATAGATAATAAATG+TGG - chr3.4:21855389-21855408 None:intergenic 15.0%
!! ATAGTTATTCGTATATATTT+CGG - chr3.4:21853604-21853623 None:intergenic 15.0%
!! ATATGTTAATAATAGCAATT+TGG + chr3.4:21857673-21857692 MS.gene82306:intron 15.0%
!! ATATTACTTAATGTGTTAAA+CGG + chr3.4:21858978-21858997 MS.gene82306:intron 15.0%
!! TAATTAAAACAACAAAATCA+AGG - chr3.4:21853377-21853396 None:intergenic 15.0%
!! TCAATTGTAAAATTTATAGA+TGG - chr3.4:21855684-21855703 None:intergenic 15.0%
!! TGCTATTATTAACATATATT+AGG - chr3.4:21857670-21857689 None:intergenic 15.0%
!!! ACATCTTATAATGTATATTT+TGG + chr3.4:21854443-21854462 MS.gene82306:intron 15.0%
!!! ATTGATAGTTGTTAAAATAT+AGG + chr3.4:21853854-21853873 MS.gene82306:intron 15.0%
!!! ATTTTATGACTATTTCAAAA+AGG + chr3.4:21853740-21853759 MS.gene82306:intron 15.0%
!!! GCTAATAATTATATTTTTGT+TGG + chr3.4:21856179-21856198 MS.gene82306:intron 15.0%
!!! GTTTTTTCTTTTTTTACTTT+AGG + chr3.4:21858816-21858835 MS.gene82306:intron 15.0%
!!! TAAAGAGTAAATATTCATTT+TGG - chr3.4:21854278-21854297 None:intergenic 15.0%
!!! TAGTTTTTTTTTTTTTTACC+AGG + chr3.4:21857609-21857628 MS.gene82306:intron 15.0%
!!! TATTTTAACAACTATCAATT+TGG - chr3.4:21853853-21853872 None:intergenic 15.0%
!!! TTGATAGTTGTTAAAATATA+GGG + chr3.4:21853855-21853874 MS.gene82306:intron 15.0%
!!! TTGTAATTTTTATATACTCA+GGG - chr3.4:21854031-21854050 None:intergenic 15.0%
!!! TTGTTTTGTTTTTGTTTAAA+TGG + chr3.4:21853407-21853426 MS.gene82306:intron 15.0%
!!! TTTGTAATTTTTATATACTC+AGG - chr3.4:21854032-21854051 None:intergenic 15.0%
!!! TTTGTATTTTTAGAACTATT+GGG + chr3.4:21854579-21854598 MS.gene82306:intron 15.0%
!!! TTTTGTATTTTTAGAACTAT+TGG + chr3.4:21854578-21854597 MS.gene82306:intron 15.0%
!!! TTTTTTTTGAAAACTTTGTA+TGG + chr3.4:21853309-21853328 MS.gene82306:intron 15.0%
!! AATGTAATATACTCATATAC+GGG - chr3.4:21855363-21855382 None:intergenic 20.0%
!! AGATTATGAATATTTCGAAA+AGG - chr3.4:21853948-21853967 None:intergenic 20.0%
!! ATAGTAAGTGGTTAAATATA+GGG + chr3.4:21853892-21853911 MS.gene82306:intron 20.0%
!! ATTGAAATCTTTATCTCATT+TGG + chr3.4:21857393-21857412 MS.gene82306:intron 20.0%
!! CAGTAAAATTTAACAAAGTT+AGG - chr3.4:21853768-21853787 None:intergenic 20.0%
!! CATATATTCAAGTATTCAAA+TGG - chr3.4:21853627-21853646 None:intergenic 20.0%
!! CTGTAATTATTATATTGAGA+GGG + chr3.4:21855049-21855068 MS.gene82306:intron 20.0%
!! CTTCTGTTATTAATTAATCA+TGG - chr3.4:21854182-21854201 None:intergenic 20.0%
!! TAGATGTACTAAATTTGAAA+AGG - chr3.4:21858234-21858253 None:intergenic 20.0%
!! TCGAAATATTCATAATCTTA+GGG + chr3.4:21853950-21853969 MS.gene82306:intron 20.0%
!! TTAATGGAAACAAATATAAC+AGG - chr3.4:21858320-21858339 None:intergenic 20.0%
!! TTCAAAAGAAAATAAAGTCT+TGG - chr3.4:21858671-21858690 None:intergenic 20.0%
!! TTCGAAATATTCATAATCTT+AGG + chr3.4:21853949-21853968 MS.gene82306:intron 20.0%
!! TTGTATTTAATAGTGTATAG+TGG + chr3.4:21857168-21857187 MS.gene82306:intron 20.0%
!! TTGTCTTATGTTAGTTAATT+TGG + chr3.4:21854124-21854143 MS.gene82306:intron 20.0%
!! TTTGATATTTATGTTGTTCT+TGG + chr3.4:21856897-21856916 MS.gene82306:intron 20.0%
!!! AAAACTGTATATAGTTTTTG+AGG + chr3.4:21856655-21856674 MS.gene82306:intron 20.0%
!!! AAGATTTTAGATTATCTGTT+GGG - chr3.4:21856080-21856099 None:intergenic 20.0%
!!! AATTTAGTCTTTGAAATTGT+AGG + chr3.4:21854696-21854715 MS.gene82306:intron 20.0%
!!! TCATAATATTGGTTATTCTT+TGG - chr3.4:21856615-21856634 None:intergenic 20.0%
!!! TGTAATTTTTATATACTCAG+GGG - chr3.4:21854030-21854049 None:intergenic 20.0%
!!! TTAACTTAATTGATAGTAAG+TGG + chr3.4:21853880-21853899 MS.gene82306:intron 20.0%
!!! TTAATTACTGAAGACATTTT+TGG + chr3.4:21859338-21859357 MS.gene82306:CDS 20.0%
!!! TTTTGATAGACCATTAATTA+TGG + chr3.4:21859043-21859062 MS.gene82306:intron 20.0%
! AAAATCTCTCAATTACCAAA+GGG + chr3.4:21856871-21856890 MS.gene82306:intron 25.0%
! AAAATTATTAATGCGAGTAC+AGG + chr3.4:21857907-21857926 MS.gene82306:intron 25.0%
! AAACAATTTCTCTTTACACA+CGG + chr3.4:21858011-21858030 MS.gene82306:intron 25.0%
! AAAGTAAATTTACAGTAGAG+GGG - chr3.4:21856826-21856845 None:intergenic 25.0%
! AAGAACGAAATAAGTAAAAG+TGG + chr3.4:21856720-21856739 MS.gene82306:intron 25.0%
! AAGCATATATGATATATCCA+AGG - chr3.4:21857366-21857385 None:intergenic 25.0%
! AGAACGAAATAAGTAAAAGT+GGG + chr3.4:21856721-21856740 MS.gene82306:intron 25.0%
! AGAGAAATGCTATCATTAAA+GGG - chr3.4:21858589-21858608 None:intergenic 25.0%
! ATAAATATCAAAGAACCCTT+TGG - chr3.4:21856889-21856908 None:intergenic 25.0%
! ATACAAGGAACCATAATTAA+TGG - chr3.4:21859056-21859075 None:intergenic 25.0%
! ATAGTAGGTGGATAAATTTA+GGG + chr3.4:21853826-21853845 MS.gene82306:intron 25.0%
! ATATGATATATCCAAGGATA+CGG - chr3.4:21857360-21857379 None:intergenic 25.0%
! ATTATAGAATGTTATACCTG+AGG - chr3.4:21853566-21853585 None:intergenic 25.0%
! CAAAGTAAATTTACAGTAGA+GGG - chr3.4:21856827-21856846 None:intergenic 25.0%
! CTGTATTAAAATTGAGTACA+AGG + chr3.4:21856681-21856700 MS.gene82306:intron 25.0%
! CTTATTAATTTAATTAGGCC+GGG + chr3.4:21855297-21855316 MS.gene82306:intron 25.0%
! GATAGTAAGTGGTTAAATAT+AGG + chr3.4:21853891-21853910 MS.gene82306:intron 25.0%
! GCTGTAATTATTATATTGAG+AGG + chr3.4:21855048-21855067 MS.gene82306:intron 25.0%
! GCTTATTAATTTAATTAGGC+CGG + chr3.4:21855296-21855315 MS.gene82306:intron 25.0%
! TAAAATCTCTCAATTACCAA+AGG + chr3.4:21856870-21856889 MS.gene82306:intron 25.0%
! TAATAATCATACTTGACCTT+AGG - chr3.4:21855607-21855626 None:intergenic 25.0%
! TAATTATTATATTGAGAGGG+CGG + chr3.4:21855052-21855071 MS.gene82306:intron 25.0%
! TAGAGAAATGCTATCATTAA+AGG - chr3.4:21858590-21858609 None:intergenic 25.0%
! TATCTGCAAATTTGTGTTAA+TGG - chr3.4:21858336-21858355 None:intergenic 25.0%
! TCAAACCAAACAAATTCTTA+TGG + chr3.4:21858717-21858736 MS.gene82306:intron 25.0%
! TGAAAAAATTGAACTGTGAT+GGG + chr3.4:21857528-21857547 MS.gene82306:intron 25.0%
! TGAAATTTGTAACACAAACT+AGG + chr3.4:21855801-21855820 MS.gene82306:intron 25.0%
! TGATACAATACTTATAGGAA+TGG + chr3.4:21858773-21858792 MS.gene82306:intron 25.0%
! TGTTAAAATTCACGATTCTT+GGG + chr3.4:21858362-21858381 MS.gene82306:CDS 25.0%
! TTAGATGAAACTATTAGATC+AGG - chr3.4:21858266-21858285 None:intergenic 25.0%
! TTGTTAAAATTCACGATTCT+TGG + chr3.4:21858361-21858380 MS.gene82306:CDS 25.0%
! TTTATGAATATTATCGGAGT+TGG + chr3.4:21856347-21856366 MS.gene82306:intron 25.0%
! TTTCCATATATTGTTTGCAA+CGG - chr3.4:21858936-21858955 None:intergenic 25.0%
!! AAAGGCGATTATCTTTTATT+TGG + chr3.4:21859098-21859117 MS.gene82306:CDS 25.0%
!! AAGTTGTCATATTGATTAAC+TGG + chr3.4:21856226-21856245 MS.gene82306:intron 25.0%
!! AGTTGTCATATTGATTAACT+GGG + chr3.4:21856227-21856246 MS.gene82306:intron 25.0%
!! ATCATCCATAAGAATTTGTT+TGG - chr3.4:21858725-21858744 None:intergenic 25.0%
!! GAAGATTTTAGATTATCTGT+TGG - chr3.4:21856081-21856100 None:intergenic 25.0%
!! GACATTTCAGTTTTCTATTA+AGG + chr3.4:21857735-21857754 MS.gene82306:intron 25.0%
!! GTTATCATTTAAGACTCTTA+TGG + chr3.4:21855539-21855558 MS.gene82306:intron 25.0%
!! TATTTCAAAATTGTTGGTGA+TGG + chr3.4:21858854-21858873 MS.gene82306:intron 25.0%
!! TGTTGTTCAGTTTGATTTAA+CGG - chr3.4:21857507-21857526 None:intergenic 25.0%
!!! ACAATTTTGATTCTTGGTTA+AGG + chr3.4:21854991-21855010 MS.gene82306:intron 25.0%
!!! CAAAAGACAATTTTGATTCT+TGG + chr3.4:21854985-21855004 MS.gene82306:intron 25.0%
!!! GTATATTTTGGTAGTTTGTT+TGG + chr3.4:21854455-21854474 MS.gene82306:intron 25.0%
!!! TCTTACAGTTTTAGAGAAAT+TGG + chr3.4:21854786-21854805 MS.gene82306:intron 25.0%
!!! TGTTTAAATGGTGTTATAGA+TGG + chr3.4:21853419-21853438 MS.gene82306:intron 25.0%
AACTCCTTAATACGCTAAAA+AGG + chr3.4:21856580-21856599 MS.gene82306:intron 30.0%
AATTGTTTACTTGTTCCGAT+TGG - chr3.4:21857999-21858018 None:intergenic 30.0%
ACAGAAACTCAAGAATAATC+AGG - chr3.4:21855661-21855680 None:intergenic 30.0%
ACTAGCAAAAGACAAATTCA+TGG - chr3.4:21854060-21854079 None:intergenic 30.0%
ACTCATTTATTAAACGAGCT+AGG - chr3.4:21855255-21855274 None:intergenic 30.0%
AGAAATCATAATCCTCTCAT+GGG + chr3.4:21854933-21854952 MS.gene82306:intron 30.0%
AGAATATGCTAAAGACTGAA+TGG + chr3.4:21853803-21853822 MS.gene82306:intron 30.0%
AGCAGTTGTATGATAAATCA+TGG + chr3.4:21854829-21854848 MS.gene82306:intron 30.0%
AGGAAGTTAATAGCATCAAA+AGG - chr3.4:21858062-21858081 None:intergenic 30.0%
AGTCTTGGATATTTACTTTC+TGG - chr3.4:21858656-21858675 None:intergenic 30.0%
AGTTTGGATCGAAAATGAAA+AGG - chr3.4:21853123-21853142 None:intergenic 30.0%
ATTAAGGACTAAAGTAGTTC+CGG + chr3.4:21857751-21857770 MS.gene82306:intron 30.0%
ATTGTGGTATGAGAATTTGA+AGG - chr3.4:21855435-21855454 None:intergenic 30.0%
CAACGGATAAAACTTAGATA+TGG - chr3.4:21858919-21858938 None:intergenic 30.0%
CCAAAGTAAATTTACAGTAG+AGG - chr3.4:21856828-21856847 None:intergenic 30.0%
CCTCTACTGTAAATTTACTT+TGG + chr3.4:21856825-21856844 MS.gene82306:intron 30.0%
CGTATATATTTCGGTAAATC+TGG - chr3.4:21853595-21853614 None:intergenic 30.0%
CTGAAAAAATTGAACTGTGA+TGG + chr3.4:21857527-21857546 MS.gene82306:intron 30.0%
CTGACACTTTATTAGAGTTA+CGG + chr3.4:21853921-21853940 MS.gene82306:intron 30.0%
CTTAAAATAAAGCCTTTGAC+AGG + chr3.4:21855876-21855895 MS.gene82306:intron 30.0%
GAAAAGATAGAGGAATACAA+AGG - chr3.4:21857278-21857297 None:intergenic 30.0%
GAACGAAATAAGTAAAAGTG+GGG + chr3.4:21856722-21856741 MS.gene82306:intron 30.0%
GACAATGCATAAAATATGCA+AGG + chr3.4:21856015-21856034 MS.gene82306:intron 30.0%
GACTGTGATTCACATATAAA+GGG + chr3.4:21854611-21854630 MS.gene82306:intron 30.0%
GAGAAAATAATCTCTTCTCT+TGG - chr3.4:21856467-21856486 None:intergenic 30.0%
GATAGTAGGTGGATAAATTT+AGG + chr3.4:21853825-21853844 MS.gene82306:intron 30.0%
GTTTGGATCGAAAATGAAAA+GGG - chr3.4:21853122-21853141 None:intergenic 30.0%
TAAATGACATCATAAGAGAC+AGG - chr3.4:21858632-21858651 None:intergenic 30.0%
TAATATACTCATATACGGGT+CGG - chr3.4:21855359-21855378 None:intergenic 30.0%
TACAAAGTCACAGACTAATT+TGG - chr3.4:21853697-21853716 None:intergenic 30.0%
TACAAATCGAATATTAAGCC+TGG - chr3.4:21857630-21857649 None:intergenic 30.0%
TACTGAGAATGAGATAAAGA+AGG + chr3.4:21853460-21853479 MS.gene82306:CDS 30.0%
TAGAAATCATAATCCTCTCA+TGG + chr3.4:21854932-21854951 MS.gene82306:intron 30.0%
TATCCGTTGCAAACAATATA+TGG + chr3.4:21858930-21858949 MS.gene82306:intron 30.0%
TCGTCATATTGCAATATTGT+TGG - chr3.4:21858748-21858767 None:intergenic 30.0%
TCGTTCACAAAGAATTAGTT+TGG + chr3.4:21857702-21857721 MS.gene82306:intron 30.0%
TGACATATGTTTCAACCATT+GGG - chr3.4:21859202-21859221 None:intergenic 30.0%
TGACTGTGATTCACATATAA+AGG + chr3.4:21854610-21854629 MS.gene82306:intron 30.0%
TGATAAATCATGGAATTGCA+AGG + chr3.4:21854839-21854858 MS.gene82306:intron 30.0%
TGTAGTTCAGTTTAACAGTT+CGG + chr3.4:21857584-21857603 MS.gene82306:intron 30.0%
TGTGAATGTATACATGCTTA+AGG + chr3.4:21856203-21856222 MS.gene82306:intron 30.0%
TTCCAAAACAAGGCAATATA+AGG + chr3.4:21859016-21859035 MS.gene82306:intron 30.0%
TTGAATCTATCAGTAAGTGT+TGG + chr3.4:21859227-21859246 MS.gene82306:CDS 30.0%
TTGACGAAAAAGAAAGAGTT+TGG - chr3.4:21853139-21853158 None:intergenic 30.0%
TTGATTCTTGGTTAAGGATT+GGG + chr3.4:21854997-21855016 MS.gene82306:intron 30.0%
TTTGATTCTTGGTTAAGGAT+TGG + chr3.4:21854996-21855015 MS.gene82306:intron 30.0%
! AAAAACTTTTCTACCATGCA+GGG + chr3.4:21857435-21857454 MS.gene82306:intron 30.0%
! AAGTATGTCGTTTGTTAGTT+TGG + chr3.4:21854093-21854112 MS.gene82306:intron 30.0%
! AGAAACATGTATTGATACTG+AGG + chr3.4:21859307-21859326 MS.gene82306:CDS 30.0%
! AGAATTAGTTTGGTTCGAAA+AGG + chr3.4:21857712-21857731 MS.gene82306:intron 30.0%
! ATGGAATTGCAAGGTTATTT+TGG + chr3.4:21854848-21854867 MS.gene82306:intron 30.0%
! ATTCCAGGAACTTAACTTTT+AGG - chr3.4:21858428-21858447 None:intergenic 30.0%
! GAATTAGTTTGGTTCGAAAA+GGG + chr3.4:21857713-21857732 MS.gene82306:intron 30.0%
! GTATCAATACATGTTTCTGA+AGG - chr3.4:21859305-21859324 None:intergenic 30.0%
! GTTGTCATATTGATTAACTG+GGG + chr3.4:21856228-21856247 MS.gene82306:intron 30.0%
! TCACGCTATTTCAAAATTGT+TGG + chr3.4:21858848-21858867 MS.gene82306:intron 30.0%
! TTTTCAGCCATTAGGATATA+AGG + chr3.4:21857293-21857312 MS.gene82306:intron 30.0%
!! AAACTTAGATATGGTGCTAT+AGG - chr3.4:21858910-21858929 None:intergenic 30.0%
!! AAGTCCTTTTTAGCGTATTA+AGG - chr3.4:21856587-21856606 None:intergenic 30.0%
!! TTGATTTGTGTGAACTGTTA+AGG + chr3.4:21855566-21855585 MS.gene82306:intron 30.0%
!! TTTAACGGATCGTAAGTTTT+TGG - chr3.4:21857492-21857511 None:intergenic 30.0%
!!! CTTTTTTATAAGCATAAGCC+CGG - chr3.4:21855318-21855337 None:intergenic 30.0%
!!! TCAAAGGCTTTATTTTAAGC+CGG - chr3.4:21855875-21855894 None:intergenic 30.0%
!!! TCGTGATTATTTTTTGCAAC+AGG + chr3.4:21858392-21858411 MS.gene82306:CDS 30.0%
!!! TTCCTTATATTGCCTTGTTT+TGG - chr3.4:21859021-21859040 None:intergenic 30.0%
AAAATTCACGATTCTTGGGA+AGG + chr3.4:21858366-21858385 MS.gene82306:CDS 35.0%
AAAGTCACAGACTAATTTGG+TGG - chr3.4:21853694-21853713 None:intergenic 35.0%
AACTTCGTCCCATTGTAAAA+GGG - chr3.4:21857942-21857961 None:intergenic 35.0%
AAGTTTGTGCTATAGGATTG+TGG + chr3.4:21856272-21856291 MS.gene82306:intron 35.0%
AATAACAGAAGACACACTCA+AGG + chr3.4:21854191-21854210 MS.gene82306:intron 35.0%
ACCGAAAATAACCAAACTGT+GGG - chr3.4:21857565-21857584 None:intergenic 35.0%
ACTAGTAGACTGTTCGTTAA+TGG - chr3.4:21858105-21858124 None:intergenic 35.0%
ATAAACCACGATAGACAGAT+AGG - chr3.4:21858135-21858154 None:intergenic 35.0%
ATAATTACGACGAAGATTCC+AGG - chr3.4:21858443-21858462 None:intergenic 35.0%
ATTTGTCTTTGAACGTGAGA+CGG + chr3.4:21854383-21854402 MS.gene82306:intron 35.0%
CAATGGTTGAAACATATGTC+AGG + chr3.4:21859201-21859220 MS.gene82306:CDS 35.0%
CAGTGTTAAGTTTGTGCTAT+AGG + chr3.4:21856265-21856284 MS.gene82306:intron 35.0%
CATCCTAAAAGTTAAGTTCC+TGG + chr3.4:21858422-21858441 MS.gene82306:intron 35.0%
CTAAAGACTGAATGGATAGT+AGG + chr3.4:21853811-21853830 MS.gene82306:intron 35.0%
CTAGTAGACTGTTCGTTAAT+GGG - chr3.4:21858104-21858123 None:intergenic 35.0%
CTGACATATGTTTCAACCAT+TGG - chr3.4:21859203-21859222 None:intergenic 35.0%
CTGTACTTGTCTCCATTATT+TGG + chr3.4:21858470-21858489 MS.gene82306:intron 35.0%
GAGAATGAGATAAAGAAGGA+AGG + chr3.4:21853464-21853483 MS.gene82306:CDS 35.0%
GATTGCAAAACTGAACCATA+TGG + chr3.4:21859158-21859177 MS.gene82306:CDS 35.0%
GTCTTCTGTTAGAAATCTCA+AGG - chr3.4:21854544-21854563 None:intergenic 35.0%
GTTATGCAACACTGCTATAA+CGG + chr3.4:21857122-21857141 MS.gene82306:intron 35.0%
GTTGCTAGCATTTACAAAGA+GGG + chr3.4:21858512-21858531 MS.gene82306:CDS 35.0%
TAAAGCCTTTGACAGGTAAA+AGG + chr3.4:21855883-21855902 MS.gene82306:intron 35.0%
TAACCAAAGAGGTAAGAACT+AGG - chr3.4:21856408-21856427 None:intergenic 35.0%
TAACTGGGGAAGTTTAGTTA+GGG + chr3.4:21856242-21856261 MS.gene82306:intron 35.0%
TAACTTCGTCCCATTGTAAA+AGG - chr3.4:21857943-21857962 None:intergenic 35.0%
TACAAAGTCAGCGACTAATT+TGG + chr3.4:21853991-21854010 MS.gene82306:intron 35.0%
TAGAGGATAATTGAGCCAAT+CGG + chr3.4:21857981-21858000 MS.gene82306:intron 35.0%
TATGTCTTTCGCTAGTAGTT+TGG + chr3.4:21854485-21854504 MS.gene82306:intron 35.0%
TCATCCACCTTATATCCTAA+TGG - chr3.4:21857303-21857322 None:intergenic 35.0%
TGATATCGTCTCACACATTT+AGG + chr3.4:21854250-21854269 MS.gene82306:intron 35.0%
TGCATAAAATATGCAAGGTC+CGG + chr3.4:21856020-21856039 MS.gene82306:intron 35.0%
TGGTCTTCGAATATGTTTGT+AGG + chr3.4:21854505-21854524 MS.gene82306:intron 35.0%
TTAACTGGGGAAGTTTAGTT+AGG + chr3.4:21856241-21856260 MS.gene82306:intron 35.0%
TTCTAACAGAAGACACTCTT+TGG + chr3.4:21854550-21854569 MS.gene82306:intron 35.0%
TTGCTAGCATTTACAAAGAG+GGG + chr3.4:21858513-21858532 MS.gene82306:CDS 35.0%
TTGTCTCCATTATTTGGTAC+AGG + chr3.4:21858476-21858495 MS.gene82306:intron 35.0%
TTTGTATGGCACTCTCAAAT+AGG - chr3.4:21853977-21853996 None:intergenic 35.0%
! AACATGTATTGATACTGAGG+AGG + chr3.4:21859310-21859329 MS.gene82306:CDS 35.0%
! AAGCTTTGTATACAAGCTAG+AGG + chr3.4:21857964-21857983 MS.gene82306:intron 35.0%
! AGGCTTTTAAACAGGCTAAT+AGG + chr3.4:21855821-21855840 MS.gene82306:intron 35.0%
! ATGCACTGATGAAGTAAAGT+AGG + chr3.4:21854314-21854333 MS.gene82306:intron 35.0%
! CACAAACTAGGCTTTTAAAC+AGG + chr3.4:21855813-21855832 MS.gene82306:intron 35.0%
! CAGGACTTTTCATACAGAAA+AGG + chr3.4:21859080-21859099 MS.gene82306:intron 35.0%
! CGTAACTCTAATAAAGTGTC+AGG - chr3.4:21853923-21853942 None:intergenic 35.0%
! CTCTCTTTTCTTCCAAAACA+AGG + chr3.4:21859006-21859025 MS.gene82306:intron 35.0%
! GAAAAACTTTTCTACCATGC+AGG + chr3.4:21857434-21857453 MS.gene82306:intron 35.0%
! GAATTTGTCTTTTGCTAGTC+AGG + chr3.4:21854061-21854080 MS.gene82306:intron 35.0%
! GACTCTAACCCTTTTACAAT+GGG + chr3.4:21857931-21857950 MS.gene82306:intron 35.0%
! GTTTTACGGAACTGTTGTAA+TGG + chr3.4:21857831-21857850 MS.gene82306:intron 35.0%
! TAACCTAGTTCTTACCTCTT+TGG + chr3.4:21856402-21856421 MS.gene82306:intron 35.0%
! TGACTCTAACCCTTTTACAA+TGG + chr3.4:21857930-21857949 MS.gene82306:intron 35.0%
! TGCACTGATGAAGTAAAGTA+GGG + chr3.4:21854315-21854334 MS.gene82306:intron 35.0%
! TTTGTTATACCCGTTCAGTT+CGG + chr3.4:21857809-21857828 MS.gene82306:intron 35.0%
!! AATTAGTCGCTGACTTTGTA+TGG - chr3.4:21853991-21854010 None:intergenic 35.0%
!! TAGCATCAAAAGGAGTACTT+AGG - chr3.4:21858052-21858071 None:intergenic 35.0%
!! TCCCACAGTTTGGTTATTTT+CGG + chr3.4:21857561-21857580 MS.gene82306:intron 35.0%
!! TTATTTGGTGCTGAAACTAC+TGG + chr3.4:21859113-21859132 MS.gene82306:CDS 35.0%
!!! CAAAGGCTTTATTTTAAGCC+GGG - chr3.4:21855874-21855893 None:intergenic 35.0%
!!! TCTGTTGGGATCAAGTTTTT+TGG - chr3.4:21856066-21856085 None:intergenic 35.0%
AAAAACTAAGGCCTAAGCCT+TGG - chr3.4:21855909-21855928 None:intergenic 40.0%
AAAACTGAACCATATGGTGG+TGG + chr3.4:21859164-21859183 MS.gene82306:CDS 40.0%
AAAGTAGTTCCGGTTAGGAT+CGG + chr3.4:21857761-21857780 MS.gene82306:intron 40.0%
AAAGTCAGCGACTAATTTGG+TGG + chr3.4:21853994-21854013 MS.gene82306:intron 40.0%
AAGACTGAATGGATAGTAGG+TGG + chr3.4:21853814-21853833 MS.gene82306:intron 40.0%
AATCAGGTCTGATAACAGCA+AGG - chr3.4:21855645-21855664 None:intergenic 40.0%
AATTCTAGTACTACCCTGCA+TGG - chr3.4:21857451-21857470 None:intergenic 40.0%
AATTCTTCCGGTGGCAATTT+CGG - chr3.4:21853344-21853363 None:intergenic 40.0%
ACGGAACTGTTGTAATGGTT+CGG + chr3.4:21857836-21857855 MS.gene82306:intron 40.0%
ACTCAAATCTGAGAGCAAGA+AGG - chr3.4:21856324-21856343 None:intergenic 40.0%
AGCGTATTAAGGAGTTCATC+AGG - chr3.4:21856576-21856595 None:intergenic 40.0%
AGGAAGGAACTATAGTGACA+TGG - chr3.4:21853656-21853675 None:intergenic 40.0%
AGGCCTGGTTGAAAAAACTA+AGG - chr3.4:21855921-21855940 None:intergenic 40.0%
AGGCTTTGCTTAAATAGGCT+AGG - chr3.4:21855941-21855960 None:intergenic 40.0%
ATAATCCTCTCATGGGTCAT+GGG + chr3.4:21854940-21854959 MS.gene82306:intron 40.0%
ATGTCACTATAGTTCCTTCC+TGG + chr3.4:21853655-21853674 MS.gene82306:intron 40.0%
CACAATAGCGTAGCAGAATT+CGG - chr3.4:21857210-21857229 None:intergenic 40.0%
CACATATAAAGGGACTGTGA+TGG + chr3.4:21854621-21854640 MS.gene82306:intron 40.0%
CACCGAAAATAACCAAACTG+TGG - chr3.4:21857566-21857585 None:intergenic 40.0%
CACCTTCCTGTACCAAATAA+TGG - chr3.4:21858485-21858504 None:intergenic 40.0%
CACGATAGACAGATAGGTAA+TGG - chr3.4:21858129-21858148 None:intergenic 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr3.4:21856022-21856041 MS.gene82306:intron 40.0%
CATTACCTATCTGTCTATCG+TGG + chr3.4:21858127-21858146 MS.gene82306:intron 40.0%
CCTAATGGCTGAAAAGATAG+AGG - chr3.4:21857288-21857307 None:intergenic 40.0%
CTCCATTATTTGGTACAGGA+AGG + chr3.4:21858480-21858499 MS.gene82306:intron 40.0%
CTGTTGGACTACACTTAGTT+GGG + chr3.4:21856969-21856988 MS.gene82306:CDS 40.0%
GAAAAGTCCTGCAACATACA+AGG - chr3.4:21859071-21859090 None:intergenic 40.0%
GAACGGGTATAACAAAGGTT+TGG - chr3.4:21857805-21857824 None:intergenic 40.0%
GAACTGAACGGGTATAACAA+AGG - chr3.4:21857810-21857829 None:intergenic 40.0%
GAGGGGAACAAAAATTCACT+CGG + chr3.4:21858530-21858549 MS.gene82306:CDS 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr3.4:21856021-21856040 MS.gene82306:intron 40.0%
GGTTGCTAGCATTTACAAAG+AGG + chr3.4:21858511-21858530 MS.gene82306:CDS 40.0%
TACTAGCGAAAGACATATCG+AGG - chr3.4:21854482-21854501 None:intergenic 40.0%
TAGACTGTTCGTTAATGGGA+AGG - chr3.4:21858100-21858119 None:intergenic 40.0%
TAGCCTATTTAAGCAAAGCC+TGG + chr3.4:21855940-21855959 MS.gene82306:intron 40.0%
TATGGTTCCTTGTATGTTGC+AGG + chr3.4:21859061-21859080 MS.gene82306:intron 40.0%
TATTTAAGCAAAGCCTGGCT+CGG + chr3.4:21855945-21855964 MS.gene82306:intron 40.0%
TCAGCCATTAGGATATAAGG+TGG + chr3.4:21857296-21857315 MS.gene82306:intron 40.0%
TGATGAAGTAAAGTAGGGGT+AGG + chr3.4:21854320-21854339 MS.gene82306:intron 40.0%
TGCAAAACTGAACCATATGG+TGG + chr3.4:21859161-21859180 MS.gene82306:CDS 40.0%
TGGAACTATCAAGATCCCAA+TGG + chr3.4:21859184-21859203 MS.gene82306:CDS 40.0%
TGTCACTATAGTTCCTTCCT+GGG + chr3.4:21853656-21853675 MS.gene82306:intron 40.0%
TGTTGGACTACACTTAGTTG+GGG + chr3.4:21856970-21856989 MS.gene82306:CDS 40.0%
TGTTGTTCTTGGTAGATTCC+AGG + chr3.4:21856908-21856927 MS.gene82306:intron 40.0%
TTCCGTAAAACCGAACTGAA+CGG - chr3.4:21857822-21857841 None:intergenic 40.0%
TTGCAATCTAACAACGCTTC+AGG - chr3.4:21859146-21859165 None:intergenic 40.0%
! AGAAGGTTTTTGCACATGAC+AGG - chr3.4:21856307-21856326 None:intergenic 40.0%
! ATTACTGGTAGTGAGAGAAG+AGG - chr3.4:21853214-21853233 None:intergenic 40.0%
! CAACAGAGTTCTAACCAAAG+AGG - chr3.4:21856419-21856438 None:intergenic 40.0%
! CCTCTATCTTTTCAGCCATT+AGG + chr3.4:21857285-21857304 MS.gene82306:intron 40.0%
! GCACTGATGAAGTAAAGTAG+GGG + chr3.4:21854316-21854335 MS.gene82306:intron 40.0%
! TCAAGATTTAGAGTACGCGT+AGG - chr3.4:21858190-21858209 None:intergenic 40.0%
! TTCGCAGTGTTGTTAAATCG+CGG - chr3.4:21857242-21857261 None:intergenic 40.0%
! TTGATAGTTCCACCACCATA+TGG - chr3.4:21859176-21859195 None:intergenic 40.0%
! TTTGTAGAGCGCTCTCAAAT+AGG + chr3.4:21853711-21853730 MS.gene82306:intron 40.0%
! TTTTTGCACATGACAGGTCA+TGG - chr3.4:21856301-21856320 None:intergenic 40.0%
!! ACCTTTTTGAAAGTCTGGCT+TGG - chr3.4:21855847-21855866 None:intergenic 40.0%
!! GCTTGATAGTGATATGCCTA+AGG + chr3.4:21855588-21855607 MS.gene82306:intron 40.0%
!! TCAAAAGGAGTACTTAGGTC+TGG - chr3.4:21858047-21858066 None:intergenic 40.0%
!!! AGGCCTTAGTTTTTTCAACC+AGG + chr3.4:21855915-21855934 MS.gene82306:intron 40.0%
!!! CTGAAGACATTTTTGGCTGA+TGG + chr3.4:21859345-21859364 MS.gene82306:CDS 40.0%
!!! GGGATCAAGTTTTTTGGTAG+TGG - chr3.4:21856060-21856079 None:intergenic 40.0%
!!! TCAAGTTTTTTGGTAGTGGC+CGG - chr3.4:21856056-21856075 None:intergenic 40.0%
AAAAGCCTATGAAGCCTACC+AGG + chr3.4:21855333-21855352 MS.gene82306:intron 45.0%
ACTTTCAAAAAGGTCAGGCC+CGG + chr3.4:21855853-21855872 MS.gene82306:intron 45.0%
AGTTGTGCTTGTTTCACCTC+AGG + chr3.4:21853547-21853566 MS.gene82306:CDS 45.0%
CAAACTAAAGCGAGCTGGAT+TGG + chr3.4:21857326-21857345 MS.gene82306:CDS 45.0%
CAATCCAGCTCGCTTTAGTT+TGG - chr3.4:21857328-21857347 None:intergenic 45.0%
CAATCTAACAACGCTTCAGG+TGG - chr3.4:21859143-21859162 None:intergenic 45.0%
CATAATCCTCTCATGGGTCA+TGG + chr3.4:21854939-21854958 MS.gene82306:intron 45.0%
CTTTGACAGGTAAAAGGCCA+AGG + chr3.4:21855889-21855908 MS.gene82306:intron 45.0%
GAAGTAAAGTAGGGGTAGGT+GGG + chr3.4:21854324-21854343 MS.gene82306:intron 45.0%
GAGCCAGGCTTTGCTTAAAT+AGG - chr3.4:21855946-21855965 None:intergenic 45.0%
GAGTTCTGCTAGACCCTTAT+TGG + chr3.4:21858162-21858181 MS.gene82306:intron 45.0%
GATACCAAACTAAAGCGAGC+TGG + chr3.4:21857321-21857340 MS.gene82306:CDS 45.0%
GCCAAGCCAGACTTTCAAAA+AGG + chr3.4:21855843-21855862 MS.gene82306:intron 45.0%
GCCAGACTTTCAAAAAGGTC+AGG + chr3.4:21855848-21855867 MS.gene82306:intron 45.0%
GCTGTTGGACTACACTTAGT+TGG + chr3.4:21856968-21856987 MS.gene82306:CDS 45.0%
GGAAAGGAAATGGAGGGAAA+AGG - chr3.4:21853183-21853202 None:intergenic 45.0%
GGACTAAAGTAGTTCCGGTT+AGG + chr3.4:21857756-21857775 MS.gene82306:intron 45.0%
GGTAGTGAGAGAAGAGGAAA+GGG - chr3.4:21853208-21853227 None:intergenic 45.0%
GGTCTCCTGTTCAATTCTTC+CGG - chr3.4:21853356-21853375 None:intergenic 45.0%
GTAGTGAGAGAAGAGGAAAG+GGG - chr3.4:21853207-21853226 None:intergenic 45.0%
GTTGAGGGATTTCAGTCTCA+AGG - chr3.4:21853079-21853098 None:intergenic 45.0%
TAGGATCGGAAACACAGAAC+AGG + chr3.4:21857775-21857794 MS.gene82306:intron 45.0%
TCCGTAAAACCGAACTGAAC+GGG - chr3.4:21857821-21857840 None:intergenic 45.0%
TCGTGAACTATCCCACAGTT+TGG + chr3.4:21857551-21857570 MS.gene82306:intron 45.0%
TCTGTGTTTCCGATCCTAAC+CGG - chr3.4:21857773-21857792 None:intergenic 45.0%
TGAAGTAAAGTAGGGGTAGG+TGG + chr3.4:21854323-21854342 MS.gene82306:intron 45.0%
TGGTACAGGAAGGTGAAAAG+AGG + chr3.4:21858490-21858509 MS.gene82306:intron 45.0%
TGGTAGATTCCAGGAAACAC+TGG + chr3.4:21856917-21856936 MS.gene82306:intron 45.0%
TTGCTTAAATAGGCTAGGCC+TGG - chr3.4:21855936-21855955 None:intergenic 45.0%
! AAGGAAGGTAGTTTGCCACA+TGG + chr3.4:21853479-21853498 MS.gene82306:CDS 45.0%
! ACCCGTTCAGTTCGGTTTTA+CGG + chr3.4:21857817-21857836 MS.gene82306:intron 45.0%
! ATCGGAGTTGGTTAAGTAGC+AGG + chr3.4:21856359-21856378 MS.gene82306:intron 45.0%
! TGGTAGTGAGAGAAGAGGAA+AGG - chr3.4:21853209-21853228 None:intergenic 45.0%
!! CTTGGCCTTTTACCTGTCAA+AGG - chr3.4:21855891-21855910 None:intergenic 45.0%
!! GCCTGACCTTTTTGAAAGTC+TGG - chr3.4:21855852-21855871 None:intergenic 45.0%
!!! AAGTTTTTTGGTAGTGGCCG+GGG - chr3.4:21856054-21856073 None:intergenic 45.0%
!!! CAAGTTTTTTGGTAGTGGCC+GGG - chr3.4:21856055-21856074 None:intergenic 45.0%
!!! AATAATTATTTTCATAATAT+TGG - chr3.4:21856626-21856645 None:intergenic 5.0%
!!! TTTTTTTTTATTTTGTATTT+GGG + chr3.4:21855470-21855489 MS.gene82306:intron 5.0%
!!! TTTTTTTTTTATTTTGTATT+TGG + chr3.4:21855469-21855488 MS.gene82306:intron 5.0%
AAGGGGAGGAAAGGAAATGG+AGG - chr3.4:21853190-21853209 None:intergenic 50.0%
AATGGAGGGAAAAGGTGAGG+TGG - chr3.4:21853175-21853194 None:intergenic 50.0%
ACATGTGCAGCATCAGCTGT+TGG + chr3.4:21856953-21856972 MS.gene82306:CDS 50.0%
ACTCGTGAGCTTAGCTCAGT+TGG + chr3.4:21855988-21856007 MS.gene82306:intron 50.0%
ACTGAGCTAAGCTCACGAGT+AGG - chr3.4:21855988-21856007 None:intergenic 50.0%
AGAAGAGGAAAGGGGAGGAA+AGG - chr3.4:21853199-21853218 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr3.4:21853236-21853255 None:intergenic 50.0%
AGCAGGAACTGCATTTGAGC+TGG + chr3.4:21856376-21856395 MS.gene82306:intron 50.0%
AGGGGAGGAAAGGAAATGGA+GGG - chr3.4:21853189-21853208 None:intergenic 50.0%
AGTACGCGTAGGAGCCAATA+AGG - chr3.4:21858179-21858198 None:intergenic 50.0%
AGTCTCAAGGCAGCAGGAAA+TGG - chr3.4:21853066-21853085 None:intergenic 50.0%
AGTGGGGTTAGAGCAAGTCT+TGG + chr3.4:21856738-21856757 MS.gene82306:intron 50.0%
ATGGAGGGAAAAGGTGAGGT+GGG - chr3.4:21853174-21853193 None:intergenic 50.0%
ATTGAGAGGGCGGAGAAAGA+GGG + chr3.4:21855062-21855081 MS.gene82306:intron 50.0%
CAGGTAAAAGGCCAAGGCTT+AGG + chr3.4:21855895-21855914 MS.gene82306:intron 50.0%
CTCCTGTTCAATTCTTCCGG+TGG - chr3.4:21853353-21853372 None:intergenic 50.0%
CTGAGCTAAGCTCACGAGTA+GGG - chr3.4:21855987-21856006 None:intergenic 50.0%
GAAGGTGACTAACTCGATGG+AGG - chr3.4:21858082-21858101 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr3.4:21853237-21853256 None:intergenic 50.0%
GAGAGAGAGAGAGGGATTAC+TGG - chr3.4:21853229-21853248 None:intergenic 50.0%
GATTTCAGTCTCAAGGCAGC+AGG - chr3.4:21853072-21853091 None:intergenic 50.0%
GGAAAGGGGAGGAAAGGAAA+TGG - chr3.4:21853193-21853212 None:intergenic 50.0%
GGAAATGGAGGGAAAAGGTG+AGG - chr3.4:21853178-21853197 None:intergenic 50.0%
GTACGCGTAGGAGCCAATAA+GGG - chr3.4:21858178-21858197 None:intergenic 50.0%
TATTCCCATCCCTACTCACG+AGG - chr3.4:21855178-21855197 None:intergenic 50.0%
TATTGAGAGGGCGGAGAAAG+AGG + chr3.4:21855061-21855080 MS.gene82306:intron 50.0%
TCCTTGAGTCCTCGTGAGTA+GGG + chr3.4:21855166-21855185 MS.gene82306:intron 50.0%
TCGTGAGTAGGGATGGGAAT+AGG + chr3.4:21855177-21855196 MS.gene82306:intron 50.0%
TCTCTCTCTCTCTCTCTCTG+TGG + chr3.4:21853269-21853288 MS.gene82306:intron 50.0%
TGAGCTAAGCTCACGAGTAG+GGG - chr3.4:21855986-21856005 None:intergenic 50.0%
TGAGCTTAGCTCAGTTGGCT+TGG + chr3.4:21855993-21856012 MS.gene82306:intron 50.0%
TGCCACCGGAAGAATTGAAC+AGG + chr3.4:21853348-21853367 MS.gene82306:intron 50.0%
TGGGAAGGTGACTAACTCGA+TGG - chr3.4:21858085-21858104 None:intergenic 50.0%
! CTTTTAGTAGGCCGAGCCAT+AGG - chr3.4:21855222-21855241 None:intergenic 50.0%
! GGTAGTTTGCCACATGGTGT+TGG + chr3.4:21853485-21853504 MS.gene82306:CDS 50.0%
! TGCTGCTGCTGATAGGTTGA+GGG - chr3.4:21853094-21853113 None:intergenic 50.0%
! TTGCCACATGGTGTTGGAGA+GGG + chr3.4:21853491-21853510 MS.gene82306:CDS 50.0%
! TTTGCCACATGGTGTTGGAG+AGG + chr3.4:21853490-21853509 MS.gene82306:CDS 50.0%
ACACACCCATGACCCATGAG+AGG - chr3.4:21854948-21854967 None:intergenic 55.0%
AGTAGGGATGGGAATAGGCC+AGG + chr3.4:21855182-21855201 MS.gene82306:intron 55.0%
ATCCCCTCTCCAACACCATG+TGG - chr3.4:21853497-21853516 None:intergenic 55.0%
CTAAGCTCACGAGTAGGGGT+GGG - chr3.4:21855982-21856001 None:intergenic 55.0%
CTCCTTGAGTCCTCGTGAGT+AGG + chr3.4:21855165-21855184 MS.gene82306:intron 55.0%
CTGCTGCTGCTGATAGGTTG+AGG - chr3.4:21853095-21853114 None:intergenic 55.0%
CTTCCGGTGGCAATTTCGGT+GGG - chr3.4:21853340-21853359 None:intergenic 55.0%
GAGTCCTCGTGAGTAGGGAT+GGG + chr3.4:21855171-21855190 MS.gene82306:intron 55.0%
GCAATGCAGCCAGTGTTTCC+TGG - chr3.4:21856929-21856948 None:intergenic 55.0%
GCTTACTCACTCACCCAGGA+AGG - chr3.4:21853672-21853691 None:intergenic 55.0%
GTGAGAGAAGAGGAAAGGGG+AGG - chr3.4:21853204-21853223 None:intergenic 55.0%
TACTCATATACGGGTCGGCC+TGG - chr3.4:21855354-21855373 None:intergenic 55.0%
TAGCCCACCGAAATTGCCAC+CGG + chr3.4:21853334-21853353 MS.gene82306:intron 55.0%
TCCCTACTCACGAGGACTCA+AGG - chr3.4:21855170-21855189 None:intergenic 55.0%
TCTTCCGGTGGCAATTTCGG+TGG - chr3.4:21853341-21853360 None:intergenic 55.0%
TGAGTCCTCGTGAGTAGGGA+TGG + chr3.4:21855170-21855189 MS.gene82306:intron 55.0%
TTAAACGAGCTAGGCCGAGC+CGG - chr3.4:21855246-21855265 None:intergenic 55.0%
! TGCCACATGGTGTTGGAGAG+GGG + chr3.4:21853492-21853511 MS.gene82306:CDS 55.0%
!! GGTTTGCTGCTGCTGCTGAT+AGG - chr3.4:21853101-21853120 None:intergenic 55.0%
AAGGTCCGGGGTTCAAACCC+CGG + chr3.4:21856034-21856053 MS.gene82306:intron 60.0%
AGTAGGGGTGGGAATGAGCC+GGG - chr3.4:21855971-21855990 None:intergenic 60.0%
CATATACGGGTCGGCCTGGT+AGG - chr3.4:21855350-21855369 None:intergenic 60.0%
GAGTAGGGGTGGGAATGAGC+CGG - chr3.4:21855972-21855991 None:intergenic 60.0%
GCTAAGCTCACGAGTAGGGG+TGG - chr3.4:21855983-21856002 None:intergenic 60.0%
GGCCTACTAAAAGCCCGGCT+CGG + chr3.4:21855229-21855248 MS.gene82306:intron 60.0%
GGCTCGGCCTACTAAAAGCC+CGG + chr3.4:21855224-21855243 MS.gene82306:intron 60.0%
GGTGGCTTACTCACTCACCC+AGG - chr3.4:21853676-21853695 None:intergenic 60.0%
GTCGGCCTGGTAGGCTTCAT+AGG - chr3.4:21855341-21855360 None:intergenic 60.0%
TAAACGAGCTAGGCCGAGCC+GGG - chr3.4:21855245-21855264 None:intergenic 60.0%
AGTGGCCGGGGTTTGAACCC+CGG - chr3.4:21856042-21856061 None:intergenic 65.0%
! GGCCGAGCCGGGCTTTTAGT+AGG - chr3.4:21855234-21855253 None:intergenic 65.0%
!! AAGCAAAGCCTGGCTCGGCC+CGG + chr3.4:21855950-21855969 MS.gene82306:intron 65.0%
AATAGGCCAGGCCGCCCGTC+AGG + chr3.4:21855194-21855213 MS.gene82306:intron 70.0%
AGCCATAGGCCCCTGACGGG+CGG - chr3.4:21855208-21855227 None:intergenic 70.0%
ATAGGCCAGGCCGCCCGTCA+GGG + chr3.4:21855195-21855214 MS.gene82306:intron 70.0%
CCCGTCAGGGGCCTATGGCT+CGG + chr3.4:21855208-21855227 MS.gene82306:intron 70.0%
CCGAGCCATAGGCCCCTGAC+GGG - chr3.4:21855211-21855230 None:intergenic 70.0%
GCCGAGCCATAGGCCCCTGA+CGG - chr3.4:21855212-21855231 None:intergenic 70.0%
GGAATGAGCCGGGCCGAGCC+AGG - chr3.4:21855961-21855980 None:intergenic 75.0%
TAGGCCAGGCCGCCCGTCAG+GGG + chr3.4:21855196-21855215 MS.gene82306:intron 75.0%
! GGCCGCCCGTCAGGGGCCTA+TGG + chr3.4:21855203-21855222 MS.gene82306:intron 80.0%
!! TAGGCCCCTGACGGGCGGCC+TGG - chr3.4:21855203-21855222 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 21853054 21859364 21853054 ID=MS.gene82306
chr3.4 mRNA 21853054 21859364 21853054 ID=MS.gene82306.t1;Parent=MS.gene82306
chr3.4 exon 21853054 21853153 21853054 ID=MS.gene82306.t1.exon1;Parent=MS.gene82306.t1
chr3.4 CDS 21853054 21853153 21853054 ID=cds.MS.gene82306.t1;Parent=MS.gene82306.t1
chr3.4 exon 21853438 21853568 21853438 ID=MS.gene82306.t1.exon2;Parent=MS.gene82306.t1
chr3.4 CDS 21853438 21853568 21853438 ID=cds.MS.gene82306.t1;Parent=MS.gene82306.t1
chr3.4 exon 21856923 21856991 21856923 ID=MS.gene82306.t1.exon3;Parent=MS.gene82306.t1
chr3.4 CDS 21856923 21856991 21856923 ID=cds.MS.gene82306.t1;Parent=MS.gene82306.t1
chr3.4 exon 21857300 21857358 21857300 ID=MS.gene82306.t1.exon4;Parent=MS.gene82306.t1
chr3.4 CDS 21857300 21857358 21857300 ID=cds.MS.gene82306.t1;Parent=MS.gene82306.t1
chr3.4 exon 21858353 21858413 21858353 ID=MS.gene82306.t1.exon5;Parent=MS.gene82306.t1
chr3.4 CDS 21858353 21858413 21858353 ID=cds.MS.gene82306.t1;Parent=MS.gene82306.t1
chr3.4 exon 21858498 21858551 21858498 ID=MS.gene82306.t1.exon6;Parent=MS.gene82306.t1
chr3.4 CDS 21858498 21858551 21858498 ID=cds.MS.gene82306.t1;Parent=MS.gene82306.t1
chr3.4 exon 21859083 21859364 21859083 ID=MS.gene82306.t1.exon7;Parent=MS.gene82306.t1
chr3.4 CDS 21859083 21859364 21859083 ID=cds.MS.gene82306.t1;Parent=MS.gene82306.t1
Gene Sequence

>MS.gene82306

ATGGACATACCATTTCCTGCTGCCTTGAGACTGAAATCCCTCAACCTATCAGCAGCAGCAGCAAACCCTTTTCATTTTCGATCCAAACTCTTTCTTTTTCGTCAACTTCACTTCAAACCCACCTCACCTTTTCCCTCCATTTCCTTTCCTCCCCTTTCCTCTTCTCTCACTACCAGTAATCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGGTTAATTTGCTTTTTTTTTTTTTTTTGAAAACTTTGTATGGACTAGCCCACCGAAATTGCCACCGGAAGAATTGAACAGGAGACCTTGATTTTGTTGTTTTAATTATTTTCTAATGTTGTTTTGTTTTTGTTTAAATGGTGTTATAGATGGTTCTGTTGCTGCTGCTGCTACTGAGAATGAGATAAAGAAGGAAGGTAGTTTGCCACATGGTGTTGGAGAGGGGATTAATGAAGCATCACATTCTAAGATTCTTCAAGTTGTGCTTGTTTCACCTCAGGTATAACATTCTATAATTCAAATCCAGATTTACCGAAATATATACGAATAACTATCCATTTGAATACTTGAATATATGTCAAAGCCATGTCACTATAGTTCCTTCCTGGGTGAGTGAGTAAGCCACCAAATTAGTCTGTGACTTTGTAGAGCGCTCTCAAATAGGTCACTGATTTTATGACTATTTCAAAAAGGTCCCTAACTTTGTTAAATTTTACTGATACAAGTTATTCAAAGAATATGCTAAAGACTGAATGGATAGTAGGTGGATAAATTTAGGGACCAAATTGATAGTTGTTAAAATATAGGGACTTAACTTAATTGATAGTAAGTGGTTAAATATAGGGACAAACCTGACACTTTATTAGAGTTACGGACCTTTTCGAAATATTCATAATCTTAGGGACCTATTTGAGAGTGCCATACAAAGTCAGCGACTAATTTGGTGGTTTACACGTTCCCCTGAGTATATAAAAATTACAAAAGCATCCATGAATTTGTCTTTTGCTAGTCAGGTTAGTCATTAAGTATGTCGTTTGTTAGTTTGGTCGTCAATTTGTCTTATGTTAGTTAATTTGGTCGTCAATTTGTCTCTTATTTGTTAATTTCATCCATGATTAATTAATAACAGAAGACACACTCAAGGATGTTGTTTATGTTTTGATACAATTAGATACTACAATGATATCGTCTCACACATTTAGGTACCAAAATGAATATTTACTCTTTAACATATACAAAAACAAATGCACTGATGAAGTAAAGTAGGGGTAGGTGGGCAAAAACTTTATAAAATTAAAGGTGTAAACAGTTACATTTGTCTTTGAACGTGAGACGGTGTCACTATAGTTCTTGAATGTATGAAAGTTACAAAAACATCTTATAATGTATATTTTGGTAGTTTGTTTGGTCCTCGATATGTCTTTCGCTAGTAGTTTGGTCTTCGAATATGTTTGTAGGTAGTTAGTTTGATCCTTGAGATTTCTAACAGAAGACACTCTTTGGAATATTTTTGTATTTTTAGAACTATTGGGAATTATAGTGACTGTGATTCACATATAAAGGGACTGTGATGGTTTACTCAAACATAATGTACGAACAAAGATGATATTTATTGAGTGAATCATCAATTTAGTCTTTGAAATTGTAGGATGTTGAAAATTTGAAAATCTTCGAAATTTTGAAATTTTGTTAATTTCACAGACTAAATTGACACTATCTTACAGTTTTAGAGAAATTGGTGATTCAGTTGAAATTTATAAGCAGTTGTATGATAAATCATGGAATTGCAAGGTTATTTTGGACTATGTAGAAAGACTATTGAACTGTCGAGTATAAGCTTTAGCAACAAACATGATAGCAAATAGAAATCATAATCCTCTCATGGGTCATGGGTGTGTCAAAATGTACTCTTCTACAAAAGACAATTTTGATTCTTGGTTAAGGATTGGGATTTGAGTATTTCTAGAATGATGTAATTGCTGTAATTATTATATTGAGAGGGCGGAGAAAGAGGGCATAGAAACTTAATACTCTGAAATCAGATGATGTTAAAGAAAACAGATTTCTGATTTTTTATTTATACTAATAAACTAGACTCCTTGAGTCCTCGTGAGTAGGGATGGGAATAGGCCAGGCCGCCCGTCAGGGGCCTATGGCTCGGCCTACTAAAAGCCCGGCTCGGCCTAGCTCGTTTAATAAATGAGTCAAGCTTGAGCTTTTTAAAAAGCTTATTAATTTAATTAGGCCGGGCTTATGCTTATAAAAAAGCCTATGAAGCCTACCAGGCCGACCCGTATATGAGTATATTACATTTTTCCACATTTATTATCTATATCTATATATGTCAAAAAGAATTACTAATCCTTCAAATTCTCATACCACAATTATTATTATTTCAGTTTTTTTTTTATTTTGTATTTGGGATAAAACACAACTCTTGATGTTTCATACTGTTTGTAAGCTTGTTAAGTTATCATTTAAGACTCTTATGGTTATTTGATTTGTGTGAACTGTTAAGGCTTGATAGTGATATGCCTAAGGTCAAGTATGATTATTAGATTAAGTTTGAAATCCTTGCTGTTATCAGACCTGATTATTCTTGAGTTTCTGTCCATCTATAAATTTTACAATTGAGTTTTGTTAGTTCAATTTGTATATCTAATTAATGTTTATCTTTATATTAAGTATGTTGCACAAATTGAAAGAAAAAATTTGATAAACAGACTCTGTTTGAAATTTGTAACACAAACTAGGCTTTTAAACAGGCTAATAGGCCAAGCCAGACTTTCAAAAAGGTCAGGCCCGGCTTAAAATAAAGCCTTTGACAGGTAAAAGGCCAAGGCTTAGGCCTTAGTTTTTTCAACCAGGCCTAGCCTATTTAAGCAAAGCCTGGCTCGGCCCGGCTCATTCCCACCCCTACTCGTGAGCTTAGCTCAGTTGGCTTGGACAATGCATAAAATATGCAAGGTCCGGGGTTCAAACCCCGGCCACTACCAAAAAACTTGATCCCAACAGATAATCTAAAATCTTCTAAACTATTGTAGTGTAAGATACAATATTGATATCATGAGTTATTTTTTCATCTACTCTTAACAGTAGCATTGAATGTGCTAATAATTATATTTTTGTTGGTTGTGAATGTATACATGCTTAAGGAAGTTGTCATATTGATTAACTGGGGAAGTTTAGTTAGGGCAGTGTTAAGTTTGTGCTATAGGATTGTGGTATCCATGACCTGTCATGTGCAAAAACCTTCTTGCTCTCAGATTTGAGTTTTTTTATGAATATTATCGGAGTTGGTTAAGTAGCAGGAACTGCATTTGAGCTGGTGATAACCTAGTTCTTACCTCTTTGGTTAGAACTCTGTTGTATAGTCTCAAGTGCTATTCAAGTGCCAAGAGAAGAGATTATTTTCTCTATCTTTTTAAAAATTTATAATCATACTTGTCAAACATGTTAGTGCGTCAATCAATATCACAAGAAAGACTAGTTTATCTCATTTTCCTGATGAACTCCTTAATACGCTAAAAAGGACTTGTATTCCAAAGAATAACCAATATTATGAAAATAATTATTGCAAAATGAAAAACTGTATATAGTTTTTGAGGATACTGTATTAAAATTGAGTACAAGGTTGATCAATAACAAAAAAGAACGAAATAAGTAAAAGTGGGGTTAGAGCAAGTCTTGGCAATTTTGATTTAAATGAATATTTTAAGTTTAAATCACATGCAAAAAAGTATTTATGTTCAACCCCTCTACTGTAAATTTACTTTGGTGTACATATTCTTAGCTTCGATTAAAATCTCTCAATTACCAAAGGGTTCTTTGATATTTATGTTGTTCTTGGTAGATTCCAGGAAACACTGGCTGCATTGCTAGAACATGTGCAGCATCAGCTGTTGGACTACACTTAGTTGGGGTGAGTTTTGTTTTCTAATTCAACAGTTATTTACATTTGATAATATGATTGTCTTCTATTTTCATGTTTGTTGCAAATTACTTGTGTTGTCATTCGCGAATCGCAAAGAATAGCAGTTTGTTCAAATTCTGTTATGCAACACTGCTATAACGGCAGCACTACTATTTGACAACATTTTGTATTTAATAGTGTATAGTGGAACAATATCAATTCGTCCGAATTCTGCTACGCTATTGTGCTACTATAGCCGCGATTTAACAACACTGCGAAATACTAATTATTGCCTTTGTATTCCTCTATCTTTTCAGCCATTAGGATATAAGGTGGATGATACCAAACTAAAGCGAGCTGGATTGGACTACTGGCCGTATCCTTGGATATATCATATATGCTTCTTTAACATTGAAATCTTTATCTCATTTGGATTTCTCGTGCTAATCTAGAAAAACTTTTCTACCATGCAGGGTAGTACTAGAATTAAGACTGTTCAACAAAAGCCAAAAACTTACGATCCGTTAAATCAAACTGAACAACACTGAAAAAATTGAACTGTGATGGGTCGTGAACTATCCCACAGTTTGGTTATTTTCGGTGTAGTTCAGTTTAACAGTTCGGTTTAGTTTTTTTTTTTTTTACCAGGCTTAATATTCGATTTGTATTTTTTATTTTAATAGTCCTAATATATGTTAATAATAGCAATTTGGTACAGTTCGTTCACAAAGAATTAGTTTGGTTCGAAAAGGGACATTTCAGTTTTCTATTAAGGACTAAAGTAGTTCCGGTTAGGATCGGAAACACAGAACAGGTGCACCAAACCTTTGTTATACCCGTTCAGTTCGGTTTTACGGAACTGTTGTAATGGTTCGGTTTTTTTCATGAACTGAATCACGAACAGTCTACTTTTTTTTTATAAGCAAAATTATTAATGCGAGTACAGGTGACTCTAACCCTTTTACAATGGGACGAAGTTACAAGCTTTGTATACAAGCTAGAGGATAATTGAGCCAATCGGAACAAGTAAACAATTTCTCTTTACACACGGTGTTAACGAACCAGACCTAAGTACTCCTTTTGATGCTATTAACTTCCTCCATCGAGTTAGTCACCTTCCCATTAACGAACAGTCTACTAGTACCATTACCTATCTGTCTATCGTGGTTTATTGAAATTGAGTTCTGCTAGACCCTTATTGGCTCCTACGCGTACTCTAAATCTTGATTTTACTTGTTAAAGTGTGTTCCTTTTCAAATTTAGTACATCTAGTAGCTTCACCTGATCTAATAGTTTCATCTAAAAAAAAAACTTAATATTGACGTAATTGCATTCCTGTTATATTTGTTTCCATTAACACAAATTTGCAGATACGTCGTTGTTAAAATTCACGATTCTTGGGAAGGTTTTCGTGATTATTTTTTGCAACAGGTGATTATCATCCTAAAAGTTAAGTTCCTGGAATCTTCGTCGTAATTATCTTTTGACTGTACTTGTCTCCATTATTTGGTACAGGAAGGTGAAAAGAGGTTGCTAGCATTTACAAAGAGGGGAACAAAAATTCACTCGGTGAGTTTCTCATCATTAAGTTTAATAGCATAGTCCCTTTAATGATAGCATTTCTCTATTTCATGCATGACGACTGACCTGTCTCTTATGATGTCATTTATCCAGAAAGTAAATATCCAAGACTTTATTTTCTTTTGAACCAATTCTTTATTCATTATAAAATATTCAAACCAAACAAATTCTTATGGATGATCCAACAATATTGCAATATGACGAAAATTTGATACAATACTTATAGGAATGGTCTTGCTTTTTCTTACAAAAGTTTTTTCTTTTTTTACTTTAGGTAATTTTTTTCACGCTATTTCAAAATTGTTGGTGATGGTTATTCTATATTTTTAAGTTCAGAACAGTGCCTATAGCACCATATCTAAGTTTTATCCGTTGCAAACAATATATGGAAAATGTGAATAACAATATTGCATGATATTACTTAATGTGTTAAACGGATTATCTCTCTTTTCTTCCAAAACAAGGCAATATAAGGAAAATTTTGATAGACCATTAATTATGGTTCCTTGTATGTTGCAGGACTTTTCATACAGAAAAGGCGATTATCTTTTATTTGGTGCTGAAACTACTGGTCTTCCACCTGAAGCGTTGTTAGATTGCAAAACTGAACCATATGGTGGTGGAACTATCAAGATCCCAATGGTTGAAACATATGTCAGGTGTTTGAATCTATCAGTAAGTGTTGGCATAGCTTTGTATGAAGCTTCTAGACAACTAAACTATGAATCACTTCAGATACCTTCAGAAACATGTATTGATACTGAGGAGGAATCATTAATTACTGAAGACATTTTTGGCTGA

Protein sequence

>MS.gene82306.t1

MDIPFPAALRLKSLNLSAAAANPFHFRSKLFLFHGSVAAAATENEIKKEGSLPHGVGEGINEASHSKILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGYKVDDTKLKRAGLDYWPYVVVKIHDSWEGFRDYFLQQEGEKRLLAFTKRGTKIHSDFSYRKGDYLLFGAETTGLPPEALLDCKTEPYGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQIPSETCIDTEEESLITEDIFG