AlfalfaGEDB | MS.gene82306

M. sativa cultivar XinJiangDaYe / MS.gene82306

KEGG: K03216
GO: GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0009451 GO:0009987 GO:0016070 GO:0016740 GO:0016741 GO:0032259 GO:0034641 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363
PFAM: PF00588.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82306.t1	XP_024633888.1	84.7	281	10	3	1	251	1	278	1.20E-126	462.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82306.t1	P74516	49.7	157	71	3	68	224	1	149	2.2e-33	144.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82306.t1	G7IWJ3	84.7	281	10	3	1	251	1	278	8.3e-127	462.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene82306	0.803143	4.01E-49	-1.69E-46
MS.gene049297	MS.gene82306	0.823619	1.26E-53	-1.69E-46
MS.gene04933	MS.gene82306	0.813829	2.10E-51	-1.69E-46
MS.gene049758	MS.gene82306	0.825777	3.90E-54	-1.69E-46
MS.gene049910	MS.gene82306	0.817138	3.85E-52	-1.69E-46
MS.gene050301	MS.gene82306	0.836652	8.26E-57	-1.69E-46
MS.gene050319	MS.gene82306	-0.810237	1.27E-50	-1.69E-46
MS.gene050529	MS.gene82306	0.823329	1.47E-53	-1.69E-46
MS.gene050558	MS.gene82306	0.82746	1.55E-54	-1.69E-46
MS.gene050642	MS.gene82306	0.803562	3.29E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82306.t1	MTR_3g027870	84.698	281	10	3	1	251	1	278	1.71e-163	453
MS.gene82306.t1	MTR_3g027870	70.463	281	10	4	1	251	1	238	1.01e-128	364

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82306.t1	AT5G26880	74.272	206	52	1	45	250	58	262	7.33e-115	330

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Find 52 sgRNAs with CRISPR-Local

Find 409 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGAACCATATGGTGG+TGG	0.685342	3.4:+21859164	MS.gene82306:CDS
AAAATTCACGATTCTTGGGA+AGG	0.519743	3.4:+21858366	MS.gene82306:CDS
AACATGTATTGATACTGAGG+AGG	0.664583	3.4:+21859310	MS.gene82306:CDS
AAGGAAGGTAGTTTGCCACA+TGG	0.704326	3.4:+21853479	MS.gene82306:CDS
ACATGTGCAGCATCAGCTGT+TGG	0.543758	3.4:+21856953	MS.gene82306:CDS
AGAAACATGTATTGATACTG+AGG	0.626640	3.4:+21859307	MS.gene82306:CDS
AGCGAGCTGGATTGGACTAC+TGG	0.454007	3.4:+21857334	MS.gene82306:CDS
AGTCTCAAGGCAGCAGGAAA+TGG	0.436330	3.4:-21853063	None:intergenic
AGTTGTGCTTGTTTCACCTC+AGG	0.425774	3.4:+21853547	MS.gene82306:CDS
AGTTTGGATCGAAAATGAAA+AGG	0.457319	3.4:-21853120	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTCCTTAATACGCTAAAA+AGG	+	chr3.4:21856580-21856599	MS.gene82306:intron	30.0%
AATTGTTTACTTGTTCCGAT+TGG	-	chr3.4:21857999-21858018	None:intergenic	30.0%
ACAGAAACTCAAGAATAATC+AGG	-	chr3.4:21855661-21855680	None:intergenic	30.0%
ACTAGCAAAAGACAAATTCA+TGG	-	chr3.4:21854060-21854079	None:intergenic	30.0%
ACTCATTTATTAAACGAGCT+AGG	-	chr3.4:21855255-21855274	None:intergenic	30.0%
AGAAATCATAATCCTCTCAT+GGG	+	chr3.4:21854933-21854952	MS.gene82306:intron	30.0%
AGAATATGCTAAAGACTGAA+TGG	+	chr3.4:21853803-21853822	MS.gene82306:intron	30.0%
AGCAGTTGTATGATAAATCA+TGG	+	chr3.4:21854829-21854848	MS.gene82306:intron	30.0%
AGGAAGTTAATAGCATCAAA+AGG	-	chr3.4:21858062-21858081	None:intergenic	30.0%
AGTCTTGGATATTTACTTTC+TGG	-	chr3.4:21858656-21858675	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	21853054	21859364	21853054	ID=MS.gene82306
chr3.4	mRNA	21853054	21859364	21853054	ID=MS.gene82306.t1;Parent=MS.gene82306
chr3.4	exon	21853054	21853153	21853054	ID=MS.gene82306.t1.exon1;Parent=MS.gene82306.t1
chr3.4	CDS	21853054	21853153	21853054	ID=cds.MS.gene82306.t1;Parent=MS.gene82306.t1
chr3.4	exon	21853438	21853568	21853438	ID=MS.gene82306.t1.exon2;Parent=MS.gene82306.t1
chr3.4	CDS	21853438	21853568	21853438	ID=cds.MS.gene82306.t1;Parent=MS.gene82306.t1
chr3.4	exon	21856923	21856991	21856923	ID=MS.gene82306.t1.exon3;Parent=MS.gene82306.t1
chr3.4	CDS	21856923	21856991	21856923	ID=cds.MS.gene82306.t1;Parent=MS.gene82306.t1
chr3.4	exon	21857300	21857358	21857300	ID=MS.gene82306.t1.exon4;Parent=MS.gene82306.t1
chr3.4	CDS	21857300	21857358	21857300	ID=cds.MS.gene82306.t1;Parent=MS.gene82306.t1
chr3.4	exon	21858353	21858413	21858353	ID=MS.gene82306.t1.exon5;Parent=MS.gene82306.t1
chr3.4	CDS	21858353	21858413	21858353	ID=cds.MS.gene82306.t1;Parent=MS.gene82306.t1
chr3.4	exon	21858498	21858551	21858498	ID=MS.gene82306.t1.exon6;Parent=MS.gene82306.t1
chr3.4	CDS	21858498	21858551	21858498	ID=cds.MS.gene82306.t1;Parent=MS.gene82306.t1
chr3.4	exon	21859083	21859364	21859083	ID=MS.gene82306.t1.exon7;Parent=MS.gene82306.t1
chr3.4	CDS	21859083	21859364	21859083	ID=cds.MS.gene82306.t1;Parent=MS.gene82306.t1

Gene Sequence

>MS.gene82306

ATGGACATACCATTTCCTGCTGCCTTGAGACTGAAATCCCTCAACCTATCAGCAGCAGCAGCAAACCCTTTTCATTTTCGATCCAAACTCTTTCTTTTTCGTCAACTTCACTTCAAACCCACCTCACCTTTTCCCTCCATTTCCTTTCCTCCCCTTTCCTCTTCTCTCACTACCAGTAATCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGGTTAATTTGCTTTTTTTTTTTTTTTTGAAAACTTTGTATGGACTAGCCCACCGAAATTGCCACCGGAAGAATTGAACAGGAGACCTTGATTTTGTTGTTTTAATTATTTTCTAATGTTGTTTTGTTTTTGTTTAAATGGTGTTATAGATGGTTCTGTTGCTGCTGCTGCTACTGAGAATGAGATAAAGAAGGAAGGTAGTTTGCCACATGGTGTTGGAGAGGGGATTAATGAAGCATCACATTCTAAGATTCTTCAAGTTGTGCTTGTTTCACCTCAGGTATAACATTCTATAATTCAAATCCAGATTTACCGAAATATATACGAATAACTATCCATTTGAATACTTGAATATATGTCAAAGCCATGTCACTATAGTTCCTTCCTGGGTGAGTGAGTAAGCCACCAAATTAGTCTGTGACTTTGTAGAGCGCTCTCAAATAGGTCACTGATTTTATGACTATTTCAAAAAGGTCCCTAACTTTGTTAAATTTTACTGATACAAGTTATTCAAAGAATATGCTAAAGACTGAATGGATAGTAGGTGGATAAATTTAGGGACCAAATTGATAGTTGTTAAAATATAGGGACTTAACTTAATTGATAGTAAGTGGTTAAATATAGGGACAAACCTGACACTTTATTAGAGTTACGGACCTTTTCGAAATATTCATAATCTTAGGGACCTATTTGAGAGTGCCATACAAAGTCAGCGACTAATTTGGTGGTTTACACGTTCCCCTGAGTATATAAAAATTACAAAAGCATCCATGAATTTGTCTTTTGCTAGTCAGGTTAGTCATTAAGTATGTCGTTTGTTAGTTTGGTCGTCAATTTGTCTTATGTTAGTTAATTTGGTCGTCAATTTGTCTCTTATTTGTTAATTTCATCCATGATTAATTAATAACAGAAGACACACTCAAGGATGTTGTTTATGTTTTGATACAATTAGATACTACAATGATATCGTCTCACACATTTAGGTACCAAAATGAATATTTACTCTTTAACATATACAAAAACAAATGCACTGATGAAGTAAAGTAGGGGTAGGTGGGCAAAAACTTTATAAAATTAAAGGTGTAAACAGTTACATTTGTCTTTGAACGTGAGACGGTGTCACTATAGTTCTTGAATGTATGAAAGTTACAAAAACATCTTATAATGTATATTTTGGTAGTTTGTTTGGTCCTCGATATGTCTTTCGCTAGTAGTTTGGTCTTCGAATATGTTTGTAGGTAGTTAGTTTGATCCTTGAGATTTCTAACAGAAGACACTCTTTGGAATATTTTTGTATTTTTAGAACTATTGGGAATTATAGTGACTGTGATTCACATATAAAGGGACTGTGATGGTTTACTCAAACATAATGTACGAACAAAGATGATATTTATTGAGTGAATCATCAATTTAGTCTTTGAAATTGTAGGATGTTGAAAATTTGAAAATCTTCGAAATTTTGAAATTTTGTTAATTTCACAGACTAAATTGACACTATCTTACAGTTTTAGAGAAATTGGTGATTCAGTTGAAATTTATAAGCAGTTGTATGATAAATCATGGAATTGCAAGGTTATTTTGGACTATGTAGAAAGACTATTGAACTGTCGAGTATAAGCTTTAGCAACAAACATGATAGCAAATAGAAATCATAATCCTCTCATGGGTCATGGGTGTGTCAAAATGTACTCTTCTACAAAAGACAATTTTGATTCTTGGTTAAGGATTGGGATTTGAGTATTTCTAGAATGATGTAATTGCTGTAATTATTATATTGAGAGGGCGGAGAAAGAGGGCATAGAAACTTAATACTCTGAAATCAGATGATGTTAAAGAAAACAGATTTCTGATTTTTTATTTATACTAATAAACTAGACTCCTTGAGTCCTCGTGAGTAGGGATGGGAATAGGCCAGGCCGCCCGTCAGGGGCCTATGGCTCGGCCTACTAAAAGCCCGGCTCGGCCTAGCTCGTTTAATAAATGAGTCAAGCTTGAGCTTTTTAAAAAGCTTATTAATTTAATTAGGCCGGGCTTATGCTTATAAAAAAGCCTATGAAGCCTACCAGGCCGACCCGTATATGAGTATATTACATTTTTCCACATTTATTATCTATATCTATATATGTCAAAAAGAATTACTAATCCTTCAAATTCTCATACCACAATTATTATTATTTCAGTTTTTTTTTTATTTTGTATTTGGGATAAAACACAACTCTTGATGTTTCATACTGTTTGTAAGCTTGTTAAGTTATCATTTAAGACTCTTATGGTTATTTGATTTGTGTGAACTGTTAAGGCTTGATAGTGATATGCCTAAGGTCAAGTATGATTATTAGATTAAGTTTGAAATCCTTGCTGTTATCAGACCTGATTATTCTTGAGTTTCTGTCCATCTATAAATTTTACAATTGAGTTTTGTTAGTTCAATTTGTATATCTAATTAATGTTTATCTTTATATTAAGTATGTTGCACAAATTGAAAGAAAAAATTTGATAAACAGACTCTGTTTGAAATTTGTAACACAAACTAGGCTTTTAAACAGGCTAATAGGCCAAGCCAGACTTTCAAAAAGGTCAGGCCCGGCTTAAAATAAAGCCTTTGACAGGTAAAAGGCCAAGGCTTAGGCCTTAGTTTTTTCAACCAGGCCTAGCCTATTTAAGCAAAGCCTGGCTCGGCCCGGCTCATTCCCACCCCTACTCGTGAGCTTAGCTCAGTTGGCTTGGACAATGCATAAAATATGCAAGGTCCGGGGTTCAAACCCCGGCCACTACCAAAAAACTTGATCCCAACAGATAATCTAAAATCTTCTAAACTATTGTAGTGTAAGATACAATATTGATATCATGAGTTATTTTTTCATCTACTCTTAACAGTAGCATTGAATGTGCTAATAATTATATTTTTGTTGGTTGTGAATGTATACATGCTTAAGGAAGTTGTCATATTGATTAACTGGGGAAGTTTAGTTAGGGCAGTGTTAAGTTTGTGCTATAGGATTGTGGTATCCATGACCTGTCATGTGCAAAAACCTTCTTGCTCTCAGATTTGAGTTTTTTTATGAATATTATCGGAGTTGGTTAAGTAGCAGGAACTGCATTTGAGCTGGTGATAACCTAGTTCTTACCTCTTTGGTTAGAACTCTGTTGTATAGTCTCAAGTGCTATTCAAGTGCCAAGAGAAGAGATTATTTTCTCTATCTTTTTAAAAATTTATAATCATACTTGTCAAACATGTTAGTGCGTCAATCAATATCACAAGAAAGACTAGTTTATCTCATTTTCCTGATGAACTCCTTAATACGCTAAAAAGGACTTGTATTCCAAAGAATAACCAATATTATGAAAATAATTATTGCAAAATGAAAAACTGTATATAGTTTTTGAGGATACTGTATTAAAATTGAGTACAAGGTTGATCAATAACAAAAAAGAACGAAATAAGTAAAAGTGGGGTTAGAGCAAGTCTTGGCAATTTTGATTTAAATGAATATTTTAAGTTTAAATCACATGCAAAAAAGTATTTATGTTCAACCCCTCTACTGTAAATTTACTTTGGTGTACATATTCTTAGCTTCGATTAAAATCTCTCAATTACCAAAGGGTTCTTTGATATTTATGTTGTTCTTGGTAGATTCCAGGAAACACTGGCTGCATTGCTAGAACATGTGCAGCATCAGCTGTTGGACTACACTTAGTTGGGGTGAGTTTTGTTTTCTAATTCAACAGTTATTTACATTTGATAATATGATTGTCTTCTATTTTCATGTTTGTTGCAAATTACTTGTGTTGTCATTCGCGAATCGCAAAGAATAGCAGTTTGTTCAAATTCTGTTATGCAACACTGCTATAACGGCAGCACTACTATTTGACAACATTTTGTATTTAATAGTGTATAGTGGAACAATATCAATTCGTCCGAATTCTGCTACGCTATTGTGCTACTATAGCCGCGATTTAACAACACTGCGAAATACTAATTATTGCCTTTGTATTCCTCTATCTTTTCAGCCATTAGGATATAAGGTGGATGATACCAAACTAAAGCGAGCTGGATTGGACTACTGGCCGTATCCTTGGATATATCATATATGCTTCTTTAACATTGAAATCTTTATCTCATTTGGATTTCTCGTGCTAATCTAGAAAAACTTTTCTACCATGCAGGGTAGTACTAGAATTAAGACTGTTCAACAAAAGCCAAAAACTTACGATCCGTTAAATCAAACTGAACAACACTGAAAAAATTGAACTGTGATGGGTCGTGAACTATCCCACAGTTTGGTTATTTTCGGTGTAGTTCAGTTTAACAGTTCGGTTTAGTTTTTTTTTTTTTTACCAGGCTTAATATTCGATTTGTATTTTTTATTTTAATAGTCCTAATATATGTTAATAATAGCAATTTGGTACAGTTCGTTCACAAAGAATTAGTTTGGTTCGAAAAGGGACATTTCAGTTTTCTATTAAGGACTAAAGTAGTTCCGGTTAGGATCGGAAACACAGAACAGGTGCACCAAACCTTTGTTATACCCGTTCAGTTCGGTTTTACGGAACTGTTGTAATGGTTCGGTTTTTTTCATGAACTGAATCACGAACAGTCTACTTTTTTTTTATAAGCAAAATTATTAATGCGAGTACAGGTGACTCTAACCCTTTTACAATGGGACGAAGTTACAAGCTTTGTATACAAGCTAGAGGATAATTGAGCCAATCGGAACAAGTAAACAATTTCTCTTTACACACGGTGTTAACGAACCAGACCTAAGTACTCCTTTTGATGCTATTAACTTCCTCCATCGAGTTAGTCACCTTCCCATTAACGAACAGTCTACTAGTACCATTACCTATCTGTCTATCGTGGTTTATTGAAATTGAGTTCTGCTAGACCCTTATTGGCTCCTACGCGTACTCTAAATCTTGATTTTACTTGTTAAAGTGTGTTCCTTTTCAAATTTAGTACATCTAGTAGCTTCACCTGATCTAATAGTTTCATCTAAAAAAAAAACTTAATATTGACGTAATTGCATTCCTGTTATATTTGTTTCCATTAACACAAATTTGCAGATACGTCGTTGTTAAAATTCACGATTCTTGGGAAGGTTTTCGTGATTATTTTTTGCAACAGGTGATTATCATCCTAAAAGTTAAGTTCCTGGAATCTTCGTCGTAATTATCTTTTGACTGTACTTGTCTCCATTATTTGGTACAGGAAGGTGAAAAGAGGTTGCTAGCATTTACAAAGAGGGGAACAAAAATTCACTCGGTGAGTTTCTCATCATTAAGTTTAATAGCATAGTCCCTTTAATGATAGCATTTCTCTATTTCATGCATGACGACTGACCTGTCTCTTATGATGTCATTTATCCAGAAAGTAAATATCCAAGACTTTATTTTCTTTTGAACCAATTCTTTATTCATTATAAAATATTCAAACCAAACAAATTCTTATGGATGATCCAACAATATTGCAATATGACGAAAATTTGATACAATACTTATAGGAATGGTCTTGCTTTTTCTTACAAAAGTTTTTTCTTTTTTTACTTTAGGTAATTTTTTTCACGCTATTTCAAAATTGTTGGTGATGGTTATTCTATATTTTTAAGTTCAGAACAGTGCCTATAGCACCATATCTAAGTTTTATCCGTTGCAAACAATATATGGAAAATGTGAATAACAATATTGCATGATATTACTTAATGTGTTAAACGGATTATCTCTCTTTTCTTCCAAAACAAGGCAATATAAGGAAAATTTTGATAGACCATTAATTATGGTTCCTTGTATGTTGCAGGACTTTTCATACAGAAAAGGCGATTATCTTTTATTTGGTGCTGAAACTACTGGTCTTCCACCTGAAGCGTTGTTAGATTGCAAAACTGAACCATATGGTGGTGGAACTATCAAGATCCCAATGGTTGAAACATATGTCAGGTGTTTGAATCTATCAGTAAGTGTTGGCATAGCTTTGTATGAAGCTTCTAGACAACTAAACTATGAATCACTTCAGATACCTTCAGAAACATGTATTGATACTGAGGAGGAATCATTAATTACTGAAGACATTTTTGGCTGA

Protein sequence

>MS.gene82306.t1

MDIPFPAALRLKSLNLSAAAANPFHFRSKLFLFHGSVAAAATENEIKKEGSLPHGVGEGINEASHSKILQVVLVSPQIPGNTGCIARTCAASAVGLHLVGPLGYKVDDTKLKRAGLDYWPYVVVKIHDSWEGFRDYFLQQEGEKRLLAFTKRGTKIHSDFSYRKGDYLLFGAETTGLPPEALLDCKTEPYGGGTIKIPMVETYVRCLNLSVSVGIALYEASRQLNYESLQIPSETCIDTEEESLITEDIFG