Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82311.t1 | XP_012573140.2 | 68.9 | 103 | 28 | 1 | 37 | 139 | 368 | 466 | 6.10E-30 | 140.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82311.t1 | Q8S7E1 | 78.8 | 66 | 14 | 0 | 1 | 66 | 317 | 382 | 1.0e-25 | 117.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82311.t1 | G7JCI6 | 69.3 | 101 | 27 | 1 | 39 | 139 | 359 | 455 | 4.4e-30 | 140.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene82311 | 0.813843 | 2.08E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene82311 | 0.815165 | 1.06E-51 | -1.69E-46 |
| MS.gene049821 | MS.gene82311 | 0.812811 | 3.51E-51 | -1.69E-46 |
| MS.gene050026 | MS.gene82311 | 0.826082 | 3.30E-54 | -1.69E-46 |
| MS.gene050355 | MS.gene82311 | 0.826695 | 2.36E-54 | -1.69E-46 |
| MS.gene051198 | MS.gene82311 | 0.809689 | 1.67E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene82311 | 0.821 | 5.10E-53 | -1.69E-46 |
| MS.gene051594 | MS.gene82311 | 0.822929 | 1.82E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene82311 | 0.812681 | 3.75E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene82311 | 0.83761 | 4.70E-57 | -1.69E-46 |
| MS.gene052582 | MS.gene82311 | 0.828944 | 6.78E-55 | -1.69E-46 |
| MS.gene052584 | MS.gene82311 | 0.837297 | 5.65E-57 | -1.69E-46 |
| MS.gene052867 | MS.gene82311 | 0.802248 | 6.14E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene82311 | 0.810057 | 1.39E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene82311 | 0.828825 | 7.25E-55 | -1.69E-46 |
| MS.gene05365 | MS.gene82311 | 0.838277 | 3.17E-57 | -1.69E-46 |
| MS.gene05415 | MS.gene82311 | 0.819974 | 8.76E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene82311 | 0.819246 | 1.28E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene82311 | 0.808265 | 3.37E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene82311 | 0.845237 | 4.60E-59 | -1.69E-46 |
| MS.gene054775 | MS.gene82311 | 0.822142 | 2.78E-53 | -1.69E-46 |
| MS.gene055228 | MS.gene82311 | 0.800957 | 1.13E-48 | -1.69E-46 |
| MS.gene055586 | MS.gene82311 | 0.830437 | 2.94E-55 | -1.69E-46 |
| MS.gene055778 | MS.gene82311 | 0.809599 | 1.75E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene82311 | 0.813064 | 3.09E-51 | -1.69E-46 |
| MS.gene055841 | MS.gene82311 | 0.807728 | 4.39E-50 | -1.69E-46 |
| MS.gene056162 | MS.gene82311 | 0.828003 | 1.14E-54 | -1.69E-46 |
| MS.gene056174 | MS.gene82311 | 0.821696 | 3.52E-53 | -1.69E-46 |
| MS.gene056776 | MS.gene82311 | 0.805561 | 1.26E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene82311 | 0.815076 | 1.11E-51 | -1.69E-46 |
| MS.gene05690 | MS.gene82311 | 0.80103 | 1.09E-48 | -1.69E-46 |
| MS.gene057060 | MS.gene82311 | 0.814387 | 1.58E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene82311 | 0.814257 | 1.69E-51 | -1.69E-46 |
| MS.gene057314 | MS.gene82311 | 0.816385 | 5.68E-52 | -1.69E-46 |
| MS.gene057444 | MS.gene82311 | 0.813196 | 2.89E-51 | -1.69E-46 |
| MS.gene057598 | MS.gene82311 | 0.817147 | 3.83E-52 | -1.69E-46 |
| MS.gene058037 | MS.gene82311 | 0.806784 | 6.95E-50 | -1.69E-46 |
| MS.gene058783 | MS.gene82311 | 0.807092 | 5.98E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene82311 | 0.820212 | 7.73E-53 | -1.69E-46 |
| MS.gene05954 | MS.gene82311 | 0.813102 | 3.03E-51 | -1.69E-46 |
| MS.gene059584 | MS.gene82311 | 0.801479 | 8.83E-49 | -1.69E-46 |
| MS.gene059625 | MS.gene82311 | 0.840928 | 6.47E-58 | -1.69E-46 |
| MS.gene060429 | MS.gene82311 | 0.813662 | 2.28E-51 | -1.69E-46 |
| MS.gene060521 | MS.gene82311 | 0.801075 | 1.07E-48 | -1.69E-46 |
| MS.gene060634 | MS.gene82311 | -0.802984 | 4.33E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82311.t1 | MTR_4g065200 | 69.307 | 101 | 27 | 1 | 39 | 139 | 359 | 455 | 9.88e-40 | 142 |
| MS.gene82311.t1 | MTR_4g065150 | 66.990 | 103 | 30 | 1 | 37 | 139 | 359 | 457 | 1.14e-38 | 139 |
| MS.gene82311.t1 | MTR_4g065220 | 64.356 | 101 | 32 | 1 | 39 | 139 | 364 | 460 | 3.59e-37 | 134 |
| MS.gene82311.t1 | MTR_1g030480 | 86.364 | 66 | 9 | 0 | 1 | 66 | 310 | 375 | 1.67e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82311.t1 | AT5G12960 | 63.636 | 99 | 31 | 2 | 40 | 138 | 369 | 462 | 5.31e-34 | 125 |
| MS.gene82311.t1 | AT5G12950 | 60.952 | 105 | 36 | 2 | 34 | 138 | 359 | 458 | 6.69e-34 | 125 |
| MS.gene82311.t1 | AT1G44446 | 76.119 | 67 | 16 | 0 | 1 | 67 | 318 | 384 | 2.86e-24 | 97.4 |
| MS.gene82311.t1 | AT1G44446 | 75.758 | 66 | 16 | 0 | 1 | 66 | 318 | 383 | 3.19e-23 | 94.7 |
| MS.gene82311.t1 | AT1G44446 | 75.758 | 66 | 16 | 0 | 1 | 66 | 216 | 281 | 3.22e-23 | 94.4 |
| MS.gene82311.t1 | AT1G44446 | 75.758 | 66 | 16 | 0 | 1 | 66 | 318 | 383 | 3.43e-23 | 94.7 |
Find 42 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTACCTCCTCCTGGATTTA+TGG | 0.157910 | 3.4:-21714525 | MS.gene82311:CDS |
| AGAAGGTAGTGTGGCTGTTT+GGG | 0.259935 | 3.4:+21714550 | None:intergenic |
| AATGTTGAAGTATGAGTAAA+AGG | 0.289215 | 3.4:+21714270 | None:intergenic |
| ATGATTTATATGCTTCCTTT+AGG | 0.300957 | 3.4:-21713056 | MS.gene82311:intron |
| AAGAAGGTAGTGTGGCTGTT+TGG | 0.320416 | 3.4:+21714549 | None:intergenic |
| AAGATGTCAGCTATTCTCTT+TGG | 0.324038 | 3.4:+21713489 | None:intergenic |
| CTTATGCCTCATTTATAGAT+TGG | 0.324997 | 3.4:-21712903 | MS.gene82311:CDS |
| TTTCGCGGCACCTGTTTAGA+TGG | 0.351657 | 3.4:-21713166 | MS.gene82311:CDS |
| AAGAAGGAATGATCTGGATT+TGG | 0.390925 | 3.4:-21714586 | None:intergenic |
| ACAGATTGTCATGAAACTTC+CGG | 0.392781 | 3.4:-21714340 | MS.gene82311:intron |
| TTGAGAAAGAAGGAATGATC+TGG | 0.433991 | 3.4:-21714592 | None:intergenic |
| AAAAGTAAGCCATGTTCAAC+CGG | 0.444457 | 3.4:+21714321 | None:intergenic |
| CCTTCTTTACTACCTCCTCC+TGG | 0.448150 | 3.4:-21714533 | MS.gene82311:CDS |
| CACAACTTACAATATGTTGA+AGG | 0.454540 | 3.4:-21713439 | MS.gene82311:intron |
| CTAAGGGATGGAGTGTTCCC+AGG | 0.462886 | 3.4:-21714245 | MS.gene82311:intron |
| ATTTATAGATTGGAATATTG+AGG | 0.463853 | 3.4:-21712893 | MS.gene82311:CDS |
| ATACAAAGAGGAACAGATCC+TGG | 0.477044 | 3.4:-21713083 | MS.gene82311:CDS |
| GCTGTTTGGGGATCACTGCC+AGG | 0.478702 | 3.4:+21714563 | None:intergenic |
| TCATACTTCAACATTTGCTA+AGG | 0.484176 | 3.4:-21714262 | MS.gene82311:CDS |
| CAACATATTGTAAGTTGTGA+AGG | 0.493601 | 3.4:+21713443 | None:intergenic |
| CCAGGAGGAGGTAGTAAAGA+AGG | 0.503777 | 3.4:+21714533 | None:intergenic |
| GATAATGATTTCAGGTTTCG+CGG | 0.508807 | 3.4:-21713181 | MS.gene82311:intron |
| ACTGAGTACACCATTCGTTA+AGG | 0.509378 | 3.4:+21713106 | None:intergenic |
| CTTCAACATTTGCTAAGGGA+TGG | 0.527830 | 3.4:-21714257 | MS.gene82311:CDS |
| TACAAAGAGGAACAGATCCT+GGG | 0.532747 | 3.4:-21713082 | MS.gene82311:CDS |
| CATACTTCAACATTTGCTAA+GGG | 0.539291 | 3.4:-21714261 | MS.gene82311:CDS |
| AGGTAGTAAAGAAGGTAGTG+TGG | 0.544537 | 3.4:+21714541 | None:intergenic |
| TGGATTTATGGTCCTTGCCG+AGG | 0.545672 | 3.4:-21714513 | MS.gene82311:intron |
| AATATTCCAATCTATAAATG+AGG | 0.548260 | 3.4:+21712897 | None:intergenic |
| GGAATGATCTGGATTTGGCC+TGG | 0.548326 | 3.4:-21714581 | MS.gene82311:CDS |
| ATGAAACTTCCGGTTGAACA+TGG | 0.550052 | 3.4:-21714330 | MS.gene82311:CDS |
| TATGAACGTGCCTTAACGAA+TGG | 0.556600 | 3.4:-21713116 | MS.gene82311:CDS |
| ATGTTGAAGTATGAGTAAAA+GGG | 0.570683 | 3.4:+21714271 | None:intergenic |
| GGACGTGCGCAAGATCCAAA+AGG | 0.571017 | 3.4:+21714292 | None:intergenic |
| AGCATATAAATCATCACCCC+AGG | 0.579509 | 3.4:+21713065 | None:intergenic |
| TCGGCAAGGACCATAAATCC+AGG | 0.583930 | 3.4:+21714515 | None:intergenic |
| GAAGGTAGTGTGGCTGTTTG+GGG | 0.598304 | 3.4:+21714551 | None:intergenic |
| AGGACCATAAATCCAGGAGG+AGG | 0.624161 | 3.4:+21714521 | None:intergenic |
| ACTTATTATATACCTCGGCA+AGG | 0.666840 | 3.4:+21714501 | None:intergenic |
| GGTGTACTCAGTATACAAAG+AGG | 0.682670 | 3.4:-21713095 | MS.gene82311:CDS |
| ACAAAGAGGAACAGATCCTG+GGG | 0.705144 | 3.4:-21713081 | MS.gene82311:CDS |
| GCAAGGACCATAAATCCAGG+AGG | 0.751688 | 3.4:+21714518 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAACTTTTTTTTTAAGAAG+AGG | - | chr3.4:21713418-21713437 | MS.gene82311:intron | 15.0% |
| !! | AAAAAAGAAGATAAAAGTCA+TGG | - | chr3.4:21713077-21713096 | MS.gene82311:CDS | 20.0% |
| !! | AATATTCCAATCTATAAATG+AGG | + | chr3.4:21714572-21714591 | None:intergenic | 20.0% |
| !! | ACTATACTTATTATATACCT+CGG | + | chr3.4:21712973-21712992 | None:intergenic | 20.0% |
| !! | ATTTATAGATTGGAATATTG+AGG | - | chr3.4:21714573-21714592 | MS.gene82311:CDS | 20.0% |
| !! | CTGCTAAATTTATTATCATA+TGG | - | chr3.4:21714115-21714134 | MS.gene82311:intron | 20.0% |
| !! | TAATCCAATAAAACAACTTT+AGG | + | chr3.4:21714524-21714543 | None:intergenic | 20.0% |
| !! | TATTAACTCAGAAAAAACAT+AGG | + | chr3.4:21713391-21713410 | None:intergenic | 20.0% |
| !! | TGAAAAAAAAGGTAGTTTAT+TGG | - | chr3.4:21714152-21714171 | MS.gene82311:intron | 20.0% |
| !! | TTTATTTGATCATATTTACC+TGG | - | chr3.4:21713476-21713495 | MS.gene82311:CDS | 20.0% |
| !!! | CATGGAATTTATTTTCTTAA+AGG | - | chr3.4:21713856-21713875 | MS.gene82311:intron | 20.0% |
| !!! | CTTTAAGAAAATAAATTCCA+TGG | + | chr3.4:21713858-21713877 | None:intergenic | 20.0% |
| !!! | TTTGTTCCTATATTTTAAGA+TGG | - | chr3.4:21713896-21713915 | MS.gene82311:intron | 20.0% |
| !!! | TTTTTCTTTTGACAACTTTA+GGG | - | chr3.4:21713350-21713369 | MS.gene82311:intron | 20.0% |
| ! | AACTATTTCAGAAAGATGTT+TGG | + | chr3.4:21713928-21713947 | None:intergenic | 25.0% |
| ! | AACTGACCATCTTAAAATAT+AGG | + | chr3.4:21713905-21713924 | None:intergenic | 25.0% |
| ! | AAGAGTTTGTCATAACAAAT+TGG | + | chr3.4:21713323-21713342 | None:intergenic | 25.0% |
| ! | AATGTTGAAGTATGAGTAAA+AGG | + | chr3.4:21713199-21713218 | None:intergenic | 25.0% |
| ! | ATGATTTATATGCTTCCTTT+AGG | - | chr3.4:21714410-21714429 | MS.gene82311:intron | 25.0% |
| ! | ATGTTGAAGTATGAGTAAAA+GGG | + | chr3.4:21713198-21713217 | None:intergenic | 25.0% |
| ! | ATTATCATATGGTAGTTCAT+TGG | - | chr3.4:21714126-21714145 | MS.gene82311:intron | 25.0% |
| ! | ATTGAATCATATCACTTCAA+AGG | + | chr3.4:21713263-21713282 | None:intergenic | 25.0% |
| ! | CTAAAGTTGTCAAAAGAAAA+AGG | + | chr3.4:21713351-21713370 | None:intergenic | 25.0% |
| ! | TAAGTATAGTATGTCCTAAT+AGG | - | chr3.4:21713005-21713024 | MS.gene82311:intron | 25.0% |
| ! | TAGTTCTTCATGTAATCTTA+GGG | - | chr3.4:21714075-21714094 | MS.gene82311:intron | 25.0% |
| ! | TCAAATAAACAAACTCAAAC+AGG | + | chr3.4:21713465-21713484 | None:intergenic | 25.0% |
| ! | TTCATTGGACTTGAAAAAAA+AGG | - | chr3.4:21714141-21714160 | MS.gene82311:intron | 25.0% |
| ! | TTGAATCATATCACTTCAAA+GGG | + | chr3.4:21713262-21713281 | None:intergenic | 25.0% |
| !! | CTTTTTCTTTTGACAACTTT+AGG | - | chr3.4:21713349-21713368 | MS.gene82311:intron | 25.0% |
| !! | TTAGTTCTTCATGTAATCTT+AGG | - | chr3.4:21714074-21714093 | MS.gene82311:intron | 25.0% |
| !!! | CTTACTTTTTTACAACCTTT+TGG | - | chr3.4:21713159-21713178 | MS.gene82311:CDS | 25.0% |
| !!! | CTTTACTTTACTTTTTCTGT+AGG | - | chr3.4:21713948-21713967 | MS.gene82311:intron | 25.0% |
| !!! | TGTTTACATAACTGCTATTT+TGG | + | chr3.4:21713563-21713582 | None:intergenic | 25.0% |
| AGGATGTATCATCATAACTT+AGG | - | chr3.4:21713438-21713457 | MS.gene82311:intron | 30.0% | |
| ATATGCTTCCTTTAGGTATT+GGG | - | chr3.4:21714417-21714436 | MS.gene82311:intron | 30.0% | |
| CAACATATTGTAAGTTGTGA+AGG | + | chr3.4:21714026-21714045 | None:intergenic | 30.0% | |
| CACAACTTACAATATGTTGA+AGG | - | chr3.4:21714027-21714046 | MS.gene82311:intron | 30.0% | |
| CATAGCTCATAATACCTATT+AGG | + | chr3.4:21713022-21713041 | None:intergenic | 30.0% | |
| CTTATGCCTCATTTATAGAT+TGG | - | chr3.4:21714563-21714582 | MS.gene82311:CDS | 30.0% | |
| GGATGTATCATCATAACTTA+GGG | - | chr3.4:21713439-21713458 | MS.gene82311:intron | 30.0% | |
| TATATGCTTCCTTTAGGTAT+TGG | - | chr3.4:21714416-21714435 | MS.gene82311:intron | 30.0% | |
| TGTTGCAAGATAATGATTTC+AGG | - | chr3.4:21714277-21714296 | MS.gene82311:CDS | 30.0% | |
| TTAATGTATCACACTGACAT+AGG | + | chr3.4:21714212-21714231 | None:intergenic | 30.0% | |
| ! | CATACTTCAACATTTGCTAA+GGG | - | chr3.4:21713205-21713224 | MS.gene82311:intron | 30.0% |
| ! | CTGTTTTGTGAAAAAATACC+AGG | + | chr3.4:21713110-21713129 | None:intergenic | 30.0% |
| ! | TCATACTTCAACATTTGCTA+AGG | - | chr3.4:21713204-21713223 | MS.gene82311:intron | 30.0% |
| ! | TTACTCTCAATTGATTCAGT+AGG | - | chr3.4:21713769-21713788 | MS.gene82311:intron | 30.0% |
| !! | TATGCTTTGAAAGTTATCCA+TGG | - | chr3.4:21713838-21713857 | MS.gene82311:intron | 30.0% |
| !! | TCTGCCTAAAGTTGTTTTAT+TGG | - | chr3.4:21714517-21714536 | MS.gene82311:CDS | 30.0% |
| !!! | ACTTTACTTTTTCTGTAGGA+AGG | - | chr3.4:21713952-21713971 | MS.gene82311:intron | 30.0% |
| AAAAGTAAGCCATGTTCAAC+CGG | + | chr3.4:21713148-21713167 | None:intergenic | 35.0% | |
| AAAAGTCATGGTTTCTTACC+TGG | - | chr3.4:21713089-21713108 | MS.gene82311:CDS | 35.0% | |
| AAGATGTCAGCTATTCTCTT+TGG | + | chr3.4:21713980-21713999 | None:intergenic | 35.0% | |
| AAGCTAAAACTGGACATAGT+TGG | - | chr3.4:21714447-21714466 | MS.gene82311:intron | 35.0% | |
| ACAGATTGTCATGAAACTTC+CGG | - | chr3.4:21713126-21713145 | MS.gene82311:CDS | 35.0% | |
| ACTTATTATATACCTCGGCA+AGG | + | chr3.4:21712968-21712987 | None:intergenic | 35.0% | |
| AGCTAAAACTGGACATAGTT+GGG | - | chr3.4:21714448-21714467 | MS.gene82311:intron | 35.0% | |
| ATCCAATAATGATTCTGCTG+TGG | - | chr3.4:21714474-21714493 | MS.gene82311:intron | 35.0% | |
| ATCCACAGCAGAATCATTAT+TGG | + | chr3.4:21714479-21714498 | None:intergenic | 35.0% | |
| ATTTCGATATGTGCGTGAAA+TGG | - | chr3.4:21713689-21713708 | MS.gene82311:intron | 35.0% | |
| CGCACATATCGAAATATCTA+AGG | + | chr3.4:21713684-21713703 | None:intergenic | 35.0% | |
| ! | CTTCTTTTGTCCATCTAAAC+AGG | + | chr3.4:21714313-21714332 | None:intergenic | 35.0% |
| ! | GCACTGTTTGGAAAAGTATA+TGG | - | chr3.4:21713513-21713532 | MS.gene82311:intron | 35.0% |
| ! | TATGCTTCCTTTAGGTATTG+GGG | - | chr3.4:21714418-21714437 | MS.gene82311:intron | 35.0% |
| !! | GATAATGATTTCAGGTTTCG+CGG | - | chr3.4:21714285-21714304 | MS.gene82311:CDS | 35.0% |
| !!! | ACTATGTCCAGTTTTAGCTT+TGG | + | chr3.4:21714447-21714466 | None:intergenic | 35.0% |
| ACTGAGTACACCATTCGTTA+AGG | + | chr3.4:21714363-21714382 | None:intergenic | 40.0% | |
| AGCATATAAATCATCACCCC+AGG | + | chr3.4:21714404-21714423 | None:intergenic | 40.0% | |
| AGGTAGTAAAGAAGGTAGTG+TGG | + | chr3.4:21712928-21712947 | None:intergenic | 40.0% | |
| ATACAAAGAGGAACAGATCC+TGG | - | chr3.4:21714383-21714402 | MS.gene82311:intron | 40.0% | |
| ATGAAACTTCCGGTTGAACA+TGG | - | chr3.4:21713136-21713155 | MS.gene82311:CDS | 40.0% | |
| GCTAAAACTGGACATAGTTG+GGG | - | chr3.4:21714449-21714468 | MS.gene82311:intron | 40.0% | |
| GGCATAAACGATACAAACCT+GGG | + | chr3.4:21713241-21713260 | None:intergenic | 40.0% | |
| GGTGTACTCAGTATACAAAG+AGG | - | chr3.4:21714371-21714390 | MS.gene82311:intron | 40.0% | |
| TACAAAGAGGAACAGATCCT+GGG | - | chr3.4:21714384-21714403 | MS.gene82311:intron | 40.0% | |
| TATGAACGTGCCTTAACGAA+TGG | - | chr3.4:21714350-21714369 | MS.gene82311:intron | 40.0% | |
| TTGGAAACCCCAATACCTAA+AGG | + | chr3.4:21714428-21714447 | None:intergenic | 40.0% | |
| ! | CTTCAACATTTGCTAAGGGA+TGG | - | chr3.4:21713209-21713228 | MS.gene82311:intron | 40.0% |
| AAGAAGGTAGTGTGGCTGTT+TGG | + | chr3.4:21712920-21712939 | None:intergenic | 45.0% | |
| ACAAAGAGGAACAGATCCTG+GGG | - | chr3.4:21714385-21714404 | MS.gene82311:intron | 45.0% | |
| ACTACCTCCTCCTGGATTTA+TGG | - | chr3.4:21712941-21712960 | MS.gene82311:intron | 45.0% | |
| AGAAGGTAGTGTGGCTGTTT+GGG | + | chr3.4:21712919-21712938 | None:intergenic | 45.0% | |
| GGGCATAAACGATACAAACC+TGG | + | chr3.4:21713242-21713261 | None:intergenic | 45.0% | |
| GGGGTTTCCAAAGCTAAAAC+TGG | - | chr3.4:21714437-21714456 | MS.gene82311:intron | 45.0% | |
| TAAGCACTTGTGGCACTGTT+TGG | - | chr3.4:21713501-21713520 | MS.gene82311:intron | 45.0% | |
| TTACCTGGCATAAGCACTTG+TGG | - | chr3.4:21713491-21713510 | MS.gene82311:CDS | 45.0% | |
| TTGATTCAGTAGGCGAGATC+TGG | - | chr3.4:21713779-21713798 | MS.gene82311:intron | 45.0% | |
| !!! | CTGCTATTTTGGAGAGCTCA+TGG | + | chr3.4:21713552-21713571 | None:intergenic | 45.0% |
| AGGACCATAAATCCAGGAGG+AGG | + | chr3.4:21712948-21712967 | None:intergenic | 50.0% | |
| CCAGGAGGAGGTAGTAAAGA+AGG | + | chr3.4:21712936-21712955 | None:intergenic | 50.0% | |
| CCTTCTTTACTACCTCCTCC+TGG | - | chr3.4:21712933-21712952 | MS.gene82311:intron | 50.0% | |
| GAAGGTAGTGTGGCTGTTTG+GGG | + | chr3.4:21712918-21712937 | None:intergenic | 50.0% | |
| GCAAGGACCATAAATCCAGG+AGG | + | chr3.4:21712951-21712970 | None:intergenic | 50.0% | |
| TCGGCAAGGACCATAAATCC+AGG | + | chr3.4:21712954-21712973 | None:intergenic | 50.0% | |
| TGGATTTATGGTCCTTGCCG+AGG | - | chr3.4:21712953-21712972 | MS.gene82311:intron | 50.0% | |
| TTTCGCGGCACCTGTTTAGA+TGG | - | chr3.4:21714300-21714319 | MS.gene82311:CDS | 50.0% | |
| GGACGTGCGCAAGATCCAAA+AGG | + | chr3.4:21713177-21713196 | None:intergenic | 55.0% | |
| GTGCCACAAGTGCTTATGCC+AGG | + | chr3.4:21713497-21713516 | None:intergenic | 55.0% | |
| ! | CTAAGGGATGGAGTGTTCCC+AGG | - | chr3.4:21713221-21713240 | MS.gene82311:intron | 55.0% |
| GCTGTTTGGGGATCACTGCC+AGG | + | chr3.4:21712906-21712925 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 21712888 | 21714600 | 21712888 | ID=MS.gene82311 |
| chr3.4 | mRNA | 21712888 | 21714600 | 21712888 | ID=MS.gene82311.t1;Parent=MS.gene82311 |
| chr3.4 | exon | 21714514 | 21714600 | 21714514 | ID=MS.gene82311.t1.exon1;Parent=MS.gene82311.t1 |
| chr3.4 | CDS | 21714514 | 21714600 | 21714514 | ID=cds.MS.gene82311.t1;Parent=MS.gene82311.t1 |
| chr3.4 | exon | 21714246 | 21714358 | 21714246 | ID=MS.gene82311.t1.exon2;Parent=MS.gene82311.t1 |
| chr3.4 | CDS | 21714246 | 21714358 | 21714246 | ID=cds.MS.gene82311.t1;Parent=MS.gene82311.t1 |
| chr3.4 | exon | 21713440 | 21713518 | 21713440 | ID=MS.gene82311.t1.exon3;Parent=MS.gene82311.t1 |
| chr3.4 | CDS | 21713440 | 21713518 | 21713440 | ID=cds.MS.gene82311.t1;Parent=MS.gene82311.t1 |
| chr3.4 | exon | 21713057 | 21713189 | 21713057 | ID=MS.gene82311.t1.exon4;Parent=MS.gene82311.t1 |
| chr3.4 | CDS | 21713057 | 21713189 | 21713057 | ID=cds.MS.gene82311.t1;Parent=MS.gene82311.t1 |
| chr3.4 | exon | 21712888 | 21712937 | 21712888 | ID=MS.gene82311.t1.exon5;Parent=MS.gene82311.t1 |
| chr3.4 | CDS | 21712888 | 21712937 | 21712888 | ID=cds.MS.gene82311.t1;Parent=MS.gene82311.t1 |
| Gene Sequence |
| Protein sequence |
