AlfalfaGEDB | MS.gene82725

M. sativa cultivar XinJiangDaYe / MS.gene82725

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008037 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022414 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048544 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00954.23 PF01453.27 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82725.t1	XP_024635046.1	89.2	780	29	1	1	725	40	819	0.00E+00	1405.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82725.t1	O81832	47.7	757	350	10	5	725	37	783	4.0e-197	689.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene82725.t1	G7IXM3	89.8	744	54	4	1	725	40	780	0.0e+00	1351.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene82725	0.815744	7.90E-52	-1.69E-46
MS.gene04932	MS.gene82725	-0.807795	4.25E-50	-1.69E-46
MS.gene049488	MS.gene82725	0.804615	1.98E-49	-1.69E-46
MS.gene049609	MS.gene82725	0.80498	1.67E-49	-1.69E-46
MS.gene050670	MS.gene82725	0.819369	1.20E-52	-1.69E-46
MS.gene050747	MS.gene82725	0.802455	5.56E-49	-1.69E-46
MS.gene05081	MS.gene82725	0.816444	5.51E-52	-1.69E-46
MS.gene05105	MS.gene82725	0.819422	1.17E-52	-1.69E-46
MS.gene051525	MS.gene82725	0.823969	1.04E-53	-1.69E-46
MS.gene051838	MS.gene82725	0.841289	5.20E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene82725.t1	MTR_3g051420	89.516	744	56	3	1	725	40	780	1365
MS.gene82725.t1	MTR_3g019390	74.525	789	134	6	1	725	35	820	1189
MS.gene82725.t1	MTR_3g020280	74.587	787	132	7	1	725	35	815	1180
MS.gene82725.t1	MTR_3g020320	75.508	788	121	9	1	725	38	816	1169
MS.gene82725.t1	MTR_3g019420	74.557	790	133	7	1	725	35	821	1150
MS.gene82725.t1	MTR_3g019530	72.739	785	149	6	1	725	38	817	1146
MS.gene82725.t1	MTR_3g019530	72.187	791	149	7	1	725	38	823	1141
MS.gene82725.t1	MTR_3g019500	71.919	787	158	6	1	725	38	823	1134
MS.gene82725.t1	MTR_3g019580	71.756	786	148	9	1	725	48	820	1120
MS.gene82725.t1	MTR_3g020230	73.600	750	162	7	1	725	38	776	1116

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene82725.t1	AT4G27290	47.306	761	355	11	1	725	33	783	675
MS.gene82725.t1	AT4G27290	44.678	808	353	14	1	725	33	829	655
MS.gene82725.t1	AT4G27300	44.962	794	356	15	1	725	34	815	629
MS.gene82725.t1	AT1G65790	41.605	810	374	15	6	725	43	843	575
MS.gene82725.t1	AT1G11300	41.323	801	372	17	4	725	39	820	569
MS.gene82725.t1	AT4G21380	40.659	819	378	15	4	725	43	850	568
MS.gene82725.t1	AT1G11300	41.423	787	376	17	4	725	39	805	563
MS.gene82725.t1	AT1G65800	41.060	811	381	16	6	725	43	847	562
MS.gene82725.t1	AT1G11303	41.384	766	358	16	4	694	39	788	557
MS.gene82725.t1	AT1G11330	38.730	803	407	13	4	725	44	842	553

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Find 145 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCACAGATGACATGTT+AGG	0.562151	3.1:+38348580	None:intergenic
AAAATATTCCTAGGGCATAA+TGG	0.417154	3.1:-38349648	MS.gene82725:intron
AAAATCAGTAGTGCAGTTGT+TGG	0.476304	3.1:-38351205	MS.gene82725:CDS
AAACCAAAATCTGATATCTT+TGG	0.254460	3.1:+38349166	None:intergenic
AAACGTTTGGAAATTATTAA+TGG	0.229418	3.1:-38349289	MS.gene82725:CDS
AAAGAAATCCAAGCTTCTGT+TGG	0.510016	3.1:+38349454	None:intergenic
AAATCTAGTAATAATGAAAT+TGG	0.328045	3.1:+38350819	None:intergenic
AAATTATTAATGGTATTGCT+CGG	0.486817	3.1:-38349279	MS.gene82725:CDS
AAATTGGGAGAAGGTGGTTT+TGG	0.260612	3.1:-38349753	MS.gene82725:CDS
AACATCGGGACAAGGAATTG+AGG	0.584027	3.1:-38349588	MS.gene82725:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATATTCCTAGGGCATAA+TGG	-	chr3.1:38350249-38350268	MS.gene82725:intron	30.0%
AATTTAGATATCAGATACGG+TGG	-	chr3.1:38349482-38349501	MS.gene82725:CDS	30.0%
AGATTTGTGCTAGATACATA+TGG	-	chr3.1:38349095-38349114	MS.gene82725:intron	30.0%
ATTATTAATGGTATTGCTCG+GGG	-	chr3.1:38350620-38350639	MS.gene82725:CDS	30.0%
ATTTAGATATCAGATACGGT+GGG	-	chr3.1:38349483-38349502	MS.gene82725:CDS	30.0%
ATTTCCAATATGTGAATGCT+TGG	-	chr3.1:38349241-38349260	MS.gene82725:CDS	30.0%
CAAGAAGTGAGATATCTATA+TGG	+	chr3.1:38348849-38348868	None:intergenic	30.0%
CATATAGATATCTCACTTCT+TGG	-	chr3.1:38348847-38348866	MS.gene82725:intron	30.0%
CGCCAAAATTTCAATCAAAA+TGG	-	chr3.1:38349273-38349292	MS.gene82725:CDS	30.0%
CGTAATCTTGTAAAACTTCT+TGG	-	chr3.1:38350373-38350392	MS.gene82725:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	38348435	38351484	38348435	ID=MS.gene82725
chr3.1	mRNA	38348435	38351484	38348435	ID=MS.gene82725.t1;Parent=MS.gene82725
chr3.1	exon	38350482	38351484	38350482	ID=MS.gene82725.t1.exon1;Parent=MS.gene82725.t1
chr3.1	CDS	38350482	38351484	38350482	ID=cds.MS.gene82725.t1;Parent=MS.gene82725.t1
chr3.1	exon	38350028	38350144	38350028	ID=MS.gene82725.t1.exon2;Parent=MS.gene82725.t1
chr3.1	CDS	38350028	38350144	38350028	ID=cds.MS.gene82725.t1;Parent=MS.gene82725.t1
chr3.1	exon	38349740	38349894	38349740	ID=MS.gene82725.t1.exon3;Parent=MS.gene82725.t1
chr3.1	CDS	38349740	38349894	38349740	ID=cds.MS.gene82725.t1;Parent=MS.gene82725.t1
chr3.1	exon	38349447	38349657	38349447	ID=MS.gene82725.t1.exon4;Parent=MS.gene82725.t1
chr3.1	CDS	38349447	38349657	38349447	ID=cds.MS.gene82725.t1;Parent=MS.gene82725.t1
chr3.1	exon	38349106	38349343	38349106	ID=MS.gene82725.t1.exon5;Parent=MS.gene82725.t1
chr3.1	CDS	38349106	38349343	38349106	ID=cds.MS.gene82725.t1;Parent=MS.gene82725.t1
chr3.1	exon	38348852	38349002	38348852	ID=MS.gene82725.t1.exon6;Parent=MS.gene82725.t1
chr3.1	CDS	38348852	38349002	38348852	ID=cds.MS.gene82725.t1;Parent=MS.gene82725.t1
chr3.1	exon	38348435	38348737	38348435	ID=MS.gene82725.t1.exon7;Parent=MS.gene82725.t1
chr3.1	CDS	38348435	38348737	38348435	ID=cds.MS.gene82725.t1;Parent=MS.gene82725.t1

Gene Sequence

>MS.gene82725

ATGCAATACAGTGATACACTTGTTTCCGGAGCTGGATTGTTTGAAGCAGGATTTTTCAACTTTGGAGATCCGCTACGCCAATACTTCGGTATATGGTACAAGAGTATATCACCAAGGACTATTGTATGGGTTGCCAATAGAAATACCCCTGTACAAAACTCAACAGCAATGCTGAAGCACAATGGTCAAGGAACTCTTGTTATTGTTGATGGCTCCAAAGGCGTTATCTGGTCCTCCAATTCATCAAGAATTGTGGGAAAATCAGTAGTGCAGTTGTTGGATTCAGGAAACCTTGTTGTAAAAGATGCAAATAGCAGCAACGAGAATGATGAGTTTTTGTGGGAAAGCTTTGATTATCCTGGTGACACATTGCTTGCTGGAATGAAGCTGAAAAGTAACTTAGTGACTGGTCCATATAGATATCTCACTTCTTGGAGAACCTCTGAAGATCCTACTGTAGGTGAGTTTTCGTATAGGATCGATACTCATGGTTTTCCTCAACAGGTTATTGCAAAGGGAACAACAATTATTTATAGAGGAGGGTCATGGAATGGATATGAGTTTTGGCAAAGAATTCATAGGGTCTTGAATTACTCATTTGTGATTACTGACAAAGAAGTCACTTACCAATATCAAACGTGGACCAATTTCATTATTACTAGATTTGTGCTAGATACATATGGAACTCCACAACGTTTTATATGGTCGGATTGGACACAAAATTGGGAGGCTACAGCTACTCGTCCTATAGACCAGTGTGAAAAGTATGCTTGGTGTGGTATCAACTCTAACTGCAATATTAATAAATTTCCAATATGTGAATGCTTGGAAGGTTTCACGCCAAAATTTCAATCAAAATGGAAGTCATCAGATTGGTCTGGCGGGTGTCTGAGGAGAACAAAATTGAATTGTCTCAATGGAGATGGCTTTTTGAAGTACATAAACATGAAGTTGCCAGACACGTCGGCATCTTGGTATGACAAGAGCTTGAGCCTTGAGGAATGTAAGAAAACGTGTTTGAAAAATTGTACTTGCACTGCATATGCAAATTTAGATATCAGATACGGTGGGAGTGGTTGCTTACTTTGGTTTGACAATATTTTGGACATGAGAAAACATCGAGACCGAGGACAAGACATTTATATACGGCTAGCATCTTCAGAACTTGGTATTTTCATTTCCTATTACAACTTTTTCCTTTCCAGTTAGATATATTGCACATATTTCATATATTTCAGCATTTATCTTGATAGTATTAAGTCGTGTTGAATACTTTTAAATTCTTATTTTGAGTAAGCTTCTATACGTGCTTGTTGACTGACATTTATTTCAACCCTCAGATCATAAAAAGAATAAGAGGAACTTGAAGCTTTCTGGGACTTTTGCAGGGGTTATTGCATTCATTATAGGACTAACCGTTCTCGTATTGGTCACGTCAGCATATAGAAAGAAGCTTGGTAAGACAAGTGAACAAGTCATGATAAATAATTCTTAACATTAGAATTAGTTATAACTTACAATGAACTCTGAAGTTTTATTGATGTGTTCGTGTACATTGTTAACATTAGACCAATTTAATTGTTACTTCAGGCCATATAAAAAAGTTATTTCACTGGAAGCAGAAGAAGGAGAAGGAAGATGATGACTTGGCCACAATATTTGATTTTTCAACCATCACTAATGCAACAAATAACTTCTCTATCAGAAACAAATTGGGAGAAGGTGGTTTTGGGCCAGTGTACAAGGTAAAGTCTTGGCTACGAAGTTAGTTTATCCCCTTATTTCGCCAAGTACTATAAGTACTAAAATTTCCTAAAATATTCCTAGGGCATAATGGTAGATGGCCAAGAGATCGCTGTTAAGAGGCTTTCTAAAACATCGGGACAAGGAATTGAGGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAGCACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAAGAAGATGAAAAGATGTTGATCTATGAATTCATGCCCAACAGAAGCTTGGATTTCTTTATTTTTGGTTTGAATTTTCACACCAACCCAATTTATTGATCTCAATTTTTCTCTTGCTAAAAGCTTAAAATGTAGTTCTCATGCTAACTTAAGAAAGTGAAATCTGTTAGATGCTATGCGAAGCAAGTTACTTGATTGGACTAAACGTTTGGAAATTATTAATGGTATTGCTCGGGGGCTGTTGTATCTCCATCAAGATTCTACACTACGAATCATACATAGAGATCTCAAGACAAGCAACATTCTTCTTGATATTGATATGATCCCAAAGATATCAGATTTTGGTTTAGCCAGATCATTTATGGGAGACCAAGCTGAGGCTAATACAAATAGAGTGATGGGAACCTAGTAAGTTCGACTTATTTTTCTTCAGTTTAGGGTTTAAATATCTCATTTGTTTGTGTAGTATTATACATTGATTTCATTTTTTCGTTTCTATGAAACATTGCAGTGGATATATGCCTCCAGAATATGCTGTGCATGGATATTTCTCAATAAAATCTGATGTTTTTAGTTTTGGAGTCGTTGTGCTTGAAATAATTAGCGGTAGGAAGAATCGCGGATTTTGTGACCCTCTACATCATCTAAACCTCCTTGGTTATGTAAGTTTTGAAGTGTATATGTTCTATCTTATGACACAAGAAATAAACCAATCAATCAATGTCCACTTCATAAATGTTGAACTTACTCTTTTTGTAAACTTGATGTCATTTTAGGCATGGAGACTATGGATTGAAGAAAGGCCAAAGGAGTTAATAGCTGACATATCATATGATGAGGCCATATGTTCAGAAATAATAAGATTTATTCATGTGGGTTTATTGTGTGTACAACAGAAAGCAGAAAATAGGCCTAACATGTCATCTGTGGTTTTTATGTTGAAGAATGAGAAGTTACTCCCAACACCAAGTGAACCTGGGTTCTATGCAGGAAGAGATAACAATACAATCAGCACAGCATCTTCTTCAAAAGTGTGTTCAATAAACGAAGCTTCAATCTCATTGTTAGAGGCCCGATAG

Protein sequence

>MS.gene82725.t1

MQYSDTLVSGAGLFEAGFFNFGDPLRQYFGIWYKSISPRTIVWVANRNTPVQNSTAMLKHNGQGTLVIVDGSKGVIWSSNSSRIVGKSVVQLLDSGNLVVKDANSSNENDEFLWESFDYPGDTLLAGMKLKSNLVTGPYRYLTSWRTSEDPTVGEFSYRIDTHGFPQQVIAKGTTIIYRGGSWNGYEFWQRIHRVLNYSFVITDKEVTYQYQTWTNFIITRFVLDTYGTPQRFIWSDWTQNWEATATRPIDQCEKYAWCGINSNCNINKFPICECLEGFTPKFQSKWKSSDWSGGCLRRTKLNCLNGDGFLKYINMKLPDTSASWYDKSLSLEEYHKKNKRNLKLSGTFAGVIAFIIGLTVLVLVTSAYRKKLGHIKKLFHWKQKKEKEDDDLATIFDFSTITNATNNFSIRNKLGEGGFGPVYKGIMVDGQEIAVKRLSKTSGQGIEEFKNEVKLMATLQHRNLVKLLGCSIQEDEKMLIYEFMPNRSLDFFIFDAMRSKLLDWTKRLEIINGIARGLLYLHQDSTLRIIHRDLKTSNILLDIDMIPKISDFGLARSFMGDQAEANTNRVMGTYGYMPPEYAVHGYFSIKSDVFSFGVVVLEIISGRKNRGFCDPLHHLNLLGYAWRLWIEERPKELIADISYDEAICSEIIRFIHVGLLCVQQKAENRPNMSSVVFMLKNEKLLPTPSEPGFYAGRDNNTISTASSSKVCSINEASISLLEAR