AlfalfaGEDB | MS.gene83512

M. sativa cultivar XinJiangDaYe / MS.gene83512

KEGG: K07300
GO: GO:0005575 GO:0006810 GO:0008150 GO:0016021 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF01699.27

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83512.t1	XP_013465643.1	89.3	140	0	1	1	125	269	408	1.50E-54	222.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83512.t1	Q5KQN0	76.8	125	14	1	16	125	278	402	7.7e-44	177.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83512.t1	A0A072VCB3	89.3	140	0	1	1	125	269	408	1.1e-54	222.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene83512	0.830623	2.65E-55	-1.69E-46
MS.gene049254	MS.gene83512	0.830365	3.06E-55	-1.69E-46
MS.gene049283	MS.gene83512	0.809885	1.52E-50	-1.69E-46
MS.gene049499	MS.gene83512	0.80684	6.76E-50	-1.69E-46
MS.gene049711	MS.gene83512	0.800329	1.52E-48	-1.69E-46
MS.gene049983	MS.gene83512	0.809901	1.50E-50	-1.69E-46
MS.gene050559	MS.gene83512	0.82044	6.85E-53	-1.69E-46
MS.gene050561	MS.gene83512	0.817001	4.14E-52	-1.69E-46
MS.gene050562	MS.gene83512	0.81904	1.43E-52	-1.69E-46
MS.gene051279	MS.gene83512	0.824622	7.30E-54	-1.69E-46
MS.gene051744	MS.gene83512	0.839161	1.87E-57	-1.69E-46
MS.gene052037	MS.gene83512	0.820163	7.93E-53	-1.69E-46
MS.gene052239	MS.gene83512	-0.80192	7.17E-49	-1.69E-46
MS.gene052463	MS.gene83512	0.809753	1.62E-50	-1.69E-46
MS.gene052493	MS.gene83512	0.812817	3.50E-51	-1.69E-46
MS.gene052582	MS.gene83512	0.808905	2.46E-50	-1.69E-46
MS.gene054576	MS.gene83512	0.838462	2.84E-57	-1.69E-46
MS.gene05458	MS.gene83512	0.802927	4.45E-49	-1.69E-46
MS.gene054651	MS.gene83512	0.819846	9.37E-53	-1.69E-46
MS.gene054892	MS.gene83512	0.836347	9.87E-57	-1.69E-46
MS.gene054893	MS.gene83512	0.834085	3.67E-56	-1.69E-46
MS.gene055513	MS.gene83512	0.809504	1.83E-50	-1.69E-46
MS.gene055864	MS.gene83512	0.800783	1.23E-48	-1.69E-46
MS.gene056699	MS.gene83512	0.823891	1.08E-53	-1.69E-46
MS.gene05686	MS.gene83512	0.827356	1.64E-54	-1.69E-46
MS.gene057102	MS.gene83512	0.806689	7.28E-50	-1.69E-46
MS.gene057208	MS.gene83512	0.806357	8.56E-50	-1.69E-46
MS.gene058010	MS.gene83512	0.800246	1.58E-48	-1.69E-46
MS.gene058159	MS.gene83512	0.801099	1.06E-48	-1.69E-46
MS.gene058781	MS.gene83512	0.80007	1.71E-48	-1.69E-46
MS.gene058979	MS.gene83512	0.801299	9.61E-49	-1.69E-46
MS.gene059170	MS.gene83512	0.809299	2.03E-50	-1.69E-46
MS.gene059774	MS.gene83512	0.816871	4.42E-52	-1.69E-46
MS.gene05985	MS.gene83512	-0.802702	4.95E-49	-1.69E-46
MS.gene059965	MS.gene83512	0.849793	2.57E-60	-1.69E-46
MS.gene060259	MS.gene83512	0.80115	1.03E-48	-1.69E-46
MS.gene060412	MS.gene83512	0.801675	8.05E-49	-1.69E-46
MS.gene06052	MS.gene83512	0.818488	1.91E-52	-1.69E-46
MS.gene060697	MS.gene83512	0.817096	3.94E-52	-1.69E-46
MS.gene060932	MS.gene83512	0.818114	2.32E-52	-1.69E-46
MS.gene060935	MS.gene83512	0.814154	1.78E-51	-1.69E-46
MS.gene060937	MS.gene83512	0.821483	3.94E-53	-1.69E-46
MS.gene061188	MS.gene83512	0.810347	1.21E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83512.t1	MTR_2g105640	87.500	144	3	1	1	129	269	412	7.68e-79	239
MS.gene83512.t1	MTR_3g082180	55.072	138	47	1	6	128	266	403	1.34e-44	151
MS.gene83512.t1	MTR_7g068380	59.406	101	41	0	31	131	311	411	3.31e-37	132
MS.gene83512.t1	MTR_4g016720	45.517	145	57	2	9	131	267	411	3.69e-36	129
MS.gene83512.t1	MTR_5g070330	59.406	101	41	0	31	131	302	402	4.81e-35	125

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83512.t1	AT1G55730	64.444	135	33	1	6	125	273	407	3.94e-53	173
MS.gene83512.t1	AT1G55730	64.444	135	33	1	6	125	273	407	3.94e-53	173
MS.gene83512.t1	AT3G13320	64.444	135	33	1	6	125	273	407	1.24e-52	172
MS.gene83512.t1	AT1G55720	59.854	137	40	1	6	127	281	417	1.35e-49	164
MS.gene83512.t1	AT1G55720	59.854	137	40	1	6	127	281	417	1.90e-49	164
MS.gene83512.t1	AT3G51860	57.426	101	43	0	31	131	315	415	9.77e-36	128
MS.gene83512.t1	AT5G01490	46.897	145	61	2	1	129	271	415	2.08e-35	127
MS.gene83512.t1	AT5G01490	46.897	145	61	2	1	129	271	415	2.08e-35	127
MS.gene83512.t1	AT3G51860	58.763	97	40	0	31	127	315	411	2.27e-35	127
MS.gene83512.t1	AT2G38170	55.446	101	44	1	31	131	313	412	2.25e-33	122
MS.gene83512.t1	AT2G38170	55.446	101	44	1	31	131	313	412	2.63e-33	122
MS.gene83512.t1	AT2G38170	71.053	38	11	0	31	68	313	350	4.46e-11	59.7

Find 27 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCAATCGGAAGCGATAATT+TGG	0.177448	2.2:+209290	MS.gene83512:CDS
TCCATTCTCTCACTGGATTA+TGG	0.188698	2.2:-211596	None:intergenic
ATACCACAAACATCGATATC+TGG	0.329138	2.2:-210760	None:intergenic
TGCTATCATGTTTGCTGTAA+AGG	0.362095	2.2:+210619	MS.gene83512:CDS
GTCATCTTGCTTCCAATTGT+AGG	0.377243	2.2:+210575	MS.gene83512:CDS
ATCCCCTTCTGTGTGGTTGT+TGG	0.381081	2.2:+210964	MS.gene83512:CDS
TTTCCACAGGATATCACAAT+TGG	0.399751	2.2:+210716	MS.gene83512:intron
TCTGCGGCATTTCCTACAAT+TGG	0.429263	2.2:-210587	None:intergenic
TCCATAATCCAGTGAGAGAA+TGG	0.447733	2.2:+211595	MS.gene83512:CDS
ATCACAATTGGAGTTGCTGT+TGG	0.467118	2.2:+210728	MS.gene83512:CDS
AACTTAATCCATTCTCTCAC+TGG	0.477224	2.2:-211603	None:intergenic
CCTTCTGTGTGGTTGTTGGA+TGG	0.484096	2.2:+210968	MS.gene83512:CDS
AGAACTTGAGTTAACTCAAT+CGG	0.503816	2.2:+209276	MS.gene83512:CDS
AACCCAGATATCGATGTTTG+TGG	0.505182	2.2:+210757	MS.gene83512:CDS
ATGGTGCATGGGAAAAGAAA+TGG	0.517232	2.2:+210987	MS.gene83512:CDS
TGTGGTTGTTGGATGGTGCA+TGG	0.523510	2.2:+210975	MS.gene83512:CDS
GGTAGTTGCATTTATGATGC+AGG	0.540460	2.2:+211059	MS.gene83512:CDS
GTGGTTGTTGGATGGTGCAT+GGG	0.544841	2.2:+210976	MS.gene83512:CDS
TACCACAAACATCGATATCT+GGG	0.548709	2.2:-210759	None:intergenic
CCATCCAACAACCACACAGA+AGG	0.567175	2.2:-210968	None:intergenic
CATCCAACAACCACACAGAA+GGG	0.594191	2.2:-210967	None:intergenic
ATCCAACAACCACACAGAAG+GGG	0.630450	2.2:-210966	None:intergenic
TGAATCATTGAATATGTCAG+TGG	0.638115	2.2:+210541	MS.gene83512:CDS
AAGTGAAAACTCTGACGAGG+AGG	0.660035	2.2:+209252	MS.gene83512:CDS
TTTGTAGATCCCCTTCTGTG+TGG	0.673448	2.2:+210957	MS.gene83512:intron
TACAAGTGAAAACTCTGACG+AGG	0.708110	2.2:+209249	MS.gene83512:CDS
GATAGCACTTGCATGCTCTG+CGG	0.744200	2.2:-210603	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TATTAATTAACTTCTTAAAA+CGG	+	chr2.2:210890-210909	MS.gene83512:intron	10.0%
!!	ATTAATTAACTTCTTAAAAC+GGG	+	chr2.2:210891-210910	MS.gene83512:intron	15.0%
!!	ATACTATTATGTGAATAAAC+CGG	+	chr2.2:210829-210848	MS.gene83512:intron	20.0%
!!	GTATTCATGGAATAAAATAT+AGG	-	chr2.2:210670-210689	None:intergenic	20.0%
!!	TGAAACCTAATTCAAAAATT+AGG	+	chr2.2:211518-211537	MS.gene83512:intron	20.0%
!!!	CTTTATTTACCCAAAATTAT+GGG	-	chr2.2:209605-209624	None:intergenic	20.0%
!!!	TATGTAAGACATGAATTTTT+TGG	-	chr2.2:211203-211222	None:intergenic	20.0%
!!!	TCATTTATACCCATAATTTT+GGG	+	chr2.2:209593-209612	MS.gene83512:intron	20.0%
!!!	TCTTTATTTACCCAAAATTA+TGG	-	chr2.2:209606-209625	None:intergenic	20.0%
!!!	TTTTGCCTAATTTTTGAATT+AGG	-	chr2.2:211526-211545	None:intergenic	20.0%
!	AAAGTCATGAAAAGGAAATA+TGG	+	chr2.2:210283-210302	MS.gene83512:intron	25.0%
!	AACTGTTACAAATAGTTCTT+TGG	+	chr2.2:210790-210809	MS.gene83512:intron	25.0%
!	AATACTGTTTAATCCGTTAA+TGG	+	chr2.2:210685-210704	MS.gene83512:intron	25.0%
!	ACTGTTACAAATAGTTCTTT+GGG	+	chr2.2:210791-210810	MS.gene83512:intron	25.0%
!	ATACTTTCTGATAGATCATT+AGG	-	chr2.2:209996-210015	None:intergenic	25.0%
!	CATTAATTCCTTATAAAGTG+AGG	-	chr2.2:211143-211162	None:intergenic	25.0%
!	CTCACTTTATAAGGAATTAA+TGG	+	chr2.2:211141-211160	MS.gene83512:intron	25.0%
!	TCGTAAATTTAATCTGTTGT+TGG	+	chr2.2:210066-210085	MS.gene83512:intron	25.0%
!	TCTGAATAGTACCAAAAATA+TGG	-	chr2.2:209713-209732	None:intergenic	25.0%
!	TTATTTATCATGTCTTCGAT+AGG	+	chr2.2:211440-211459	MS.gene83512:intron	25.0%
!!	AATACTCTGTTTTATAGCAT+GGG	-	chr2.2:210238-210257	None:intergenic	25.0%
!!	AATGAACTCAGAATTTTCTT+AGG	-	chr2.2:211417-211436	None:intergenic	25.0%
!!	ATCATTAGGATTTTCTATGT+TGG	-	chr2.2:209982-210001	None:intergenic	25.0%
!!	CTCATTTATACCCATAATTT+TGG	+	chr2.2:209592-209611	MS.gene83512:intron	25.0%
!!	GCTATAAAACAGAGTATTAT+TGG	+	chr2.2:210240-210259	MS.gene83512:intron	25.0%
!!	TAATACTCTGTTTTATAGCA+TGG	-	chr2.2:210239-210258	None:intergenic	25.0%
!!!	AAGACATGAATTTTTTGGTT+TGG	-	chr2.2:211198-211217	None:intergenic	25.0%
!!!	GCATTGAGTTTTTAAGAATT+GGG	+	chr2.2:209780-209799	MS.gene83512:intron	25.0%
	AAAAGGAAATATGGAAACAG+AGG	+	chr2.2:210292-210311	MS.gene83512:intron	30.0%
	AGAACTTGAGTTAACTCAAT+CGG	+	chr2.2:209276-209295	MS.gene83512:CDS	30.0%
	AGAATGAATAGAAGTTTCAG+TGG	-	chr2.2:210446-210465	None:intergenic	30.0%
	ATACCAGGACCAAAAATAAA+AGG	-	chr2.2:210161-210180	None:intergenic	30.0%
	CCAAAAATAAAAGGCTGATA+AGG	-	chr2.2:210152-210171	None:intergenic	30.0%
	CTGTCAAGAAAATTTCATAG+GGG	-	chr2.2:211106-211125	None:intergenic	30.0%
	CTGTTACAAATAGTTCTTTG+GGG	+	chr2.2:210792-210811	MS.gene83512:intron	30.0%
	GAACTATTTGTAACAGTTCA+AGG	-	chr2.2:210788-210807	None:intergenic	30.0%
	GAGTATTATTGGAAATCATG+AGG	+	chr2.2:210251-210270	MS.gene83512:intron	30.0%
	GCTGTCAAGAAAATTTCATA+GGG	-	chr2.2:211107-211126	None:intergenic	30.0%
	GGAAAAGTTGAATCCATTAA+CGG	-	chr2.2:210701-210720	None:intergenic	30.0%
	TAACAGACTAGAGATATAGA+GGG	+	chr2.2:211391-211410	MS.gene83512:intron	30.0%
	TACTATTCAGAAGAAACGAT+GGG	+	chr2.2:209722-209741	MS.gene83512:intron	30.0%
	TCTAGTCTGTTAAATAAGCT+TGG	-	chr2.2:211383-211402	None:intergenic	30.0%
	TGAATCATTGAATATGTCAG+TGG	+	chr2.2:210541-210560	MS.gene83512:CDS	30.0%
	TGCTGTCAAGAAAATTTCAT+AGG	-	chr2.2:211108-211127	None:intergenic	30.0%
	TGTTACAAATAGTTCTTTGG+GGG	+	chr2.2:210793-210812	MS.gene83512:intron	30.0%
	TTAACAGACTAGAGATATAG+AGG	+	chr2.2:211390-211409	MS.gene83512:intron	30.0%
	TTAAGAATTGGGTGAAATAG+TGG	+	chr2.2:209791-209810	MS.gene83512:intron	30.0%
	TTATTGAAATCTTAGTGAGC+TGG	-	chr2.2:209940-209959	None:intergenic	30.0%
	TTGATGTTCCTCACTTTATA+AGG	+	chr2.2:211132-211151	MS.gene83512:intron	30.0%
!	GGTAAATAAAGAAGCATGTA+TGG	+	chr2.2:209614-209633	MS.gene83512:intron	30.0%
!!	AACGGATTAAACAGTATTCA+TGG	-	chr2.2:210683-210702	None:intergenic	30.0%
!!	AGGATTCTAAAGTCATGAAA+AGG	+	chr2.2:210275-210294	MS.gene83512:intron	30.0%
!!	AGTGATGATGACTTTTGATA+TGG	+	chr2.2:209758-209777	MS.gene83512:intron	30.0%
!!	GATCTATCAGAAAGTATTTG+TGG	+	chr2.2:209999-210018	MS.gene83512:intron	30.0%
!!	GGCATTGAGTTTTTAAGAAT+TGG	+	chr2.2:209779-209798	MS.gene83512:intron	30.0%
!!!	AATTTGGCTTGCAATTTTGA+CGG	+	chr2.2:209306-209325	MS.gene83512:CDS	30.0%
!!!	CCTTATCAGCCTTTTATTTT+TGG	+	chr2.2:210149-210168	MS.gene83512:intron	30.0%
!!!	TTAAGCTTTTGTTATTCTCG+TGG	+	chr2.2:209409-209428	MS.gene83512:intron	30.0%
	AACCATTTACACCAGTTGAA+GGG	+	chr2.2:209683-209702	MS.gene83512:intron	35.0%
	AACTTAATCCATTCTCTCAC+TGG	-	chr2.2:211606-211625	None:intergenic	35.0%
	AACTTCTTAAAACGGGATGA+TGG	+	chr2.2:210898-210917	MS.gene83512:intron	35.0%
	AAGATGCTTATGGATCAACA+AGG	-	chr2.2:210493-210512	None:intergenic	35.0%
	ACACGATTCTATGGTGTAAT+TGG	-	chr2.2:209510-209529	None:intergenic	35.0%
	AGATATCGATGTTTGTGGTA+TGG	+	chr2.2:210762-210781	MS.gene83512:intron	35.0%
	ATACCACAAACATCGATATC+TGG	-	chr2.2:210763-210782	None:intergenic	35.0%
	ATTATTGGAAATCATGAGGC+AGG	+	chr2.2:210255-210274	MS.gene83512:intron	35.0%
	CCAAATGACTATGTTGAAGT+TGG	+	chr2.2:211242-211261	MS.gene83512:intron	35.0%
	CCAACTTCAACATAGTCATT+TGG	-	chr2.2:211245-211264	None:intergenic	35.0%
	GTACTATTCAGAAGAAACGA+TGG	+	chr2.2:209721-209740	MS.gene83512:intron	35.0%
	GTATCATGTAACAGTGTGTT+AGG	-	chr2.2:209654-209673	None:intergenic	35.0%
	TAACCATTTACACCAGTTGA+AGG	+	chr2.2:209682-209701	MS.gene83512:intron	35.0%
	TACATGAAGCGAACACTAAA+AGG	-	chr2.2:209450-209469	None:intergenic	35.0%
	TACCACAAACATCGATATCT+GGG	-	chr2.2:210762-210781	None:intergenic	35.0%
	TCTAGATCTAGATCAGATCA+AGG	+	chr2.2:209899-209918	MS.gene83512:intron	35.0%
	TTTCCACAGGATATCACAAT+TGG	+	chr2.2:210716-210735	MS.gene83512:intron	35.0%
!	TGAAGGGAGTTCCATATTTT+TGG	+	chr2.2:209699-209718	MS.gene83512:intron	35.0%
!	TTGATCTTTGACTTTGACCA+AGG	-	chr2.2:209554-209573	None:intergenic	35.0%
!!	AATGGATTCAACTTTTCCAC+AGG	+	chr2.2:210703-210722	MS.gene83512:intron	35.0%
!!	TGCTATCATGTTTGCTGTAA+AGG	+	chr2.2:210619-210638	MS.gene83512:CDS	35.0%
!!	TGTTGGTTAAGCTGTTCTTT+TGG	+	chr2.2:210083-210102	MS.gene83512:intron	35.0%
!!!	ATTTTTGGTCCTGGTATGAA+TGG	+	chr2.2:210164-210183	MS.gene83512:intron	35.0%
	AAAAGGCTGATAAGGAGAAG+AGG	-	chr2.2:210144-210163	None:intergenic	40.0%
	AACCCAGATATCGATGTTTG+TGG	+	chr2.2:210757-210776	MS.gene83512:CDS	40.0%
	AATATGGAAACAGAGGAGGA+AGG	+	chr2.2:210299-210318	MS.gene83512:intron	40.0%
	AATATGGAACTCCCTTCAAC+TGG	-	chr2.2:209697-209716	None:intergenic	40.0%
	ACGAGTCGAAATACAATGTG+TGG	-	chr2.2:210050-210069	None:intergenic	40.0%
	ACTCCAATTGTGATATCCTG+TGG	-	chr2.2:210722-210741	None:intergenic	40.0%
	ACTGTACAGCTATACCTCTA+TGG	-	chr2.2:209367-209386	None:intergenic	40.0%
	AGGAAATATGGAAACAGAGG+AGG	+	chr2.2:210295-210314	MS.gene83512:intron	40.0%
	ATATGGAAACAGAGGAGGAA+GGG	+	chr2.2:210300-210319	MS.gene83512:intron	40.0%
	ATCACAATTGGAGTTGCTGT+TGG	+	chr2.2:210728-210747	MS.gene83512:CDS	40.0%
	ATGGTGCATGGGAAAAGAAA+TGG	+	chr2.2:210987-211006	MS.gene83512:CDS	40.0%
	CAATGTCTATGGGTTTACCT+TGG	+	chr2.2:209534-209553	MS.gene83512:intron	40.0%
	CCAGTAACACAAGATGCTTA+TGG	-	chr2.2:210503-210522	None:intergenic	40.0%
	CCATAAGCATCTTGTGTTAC+TGG	+	chr2.2:210500-210519	MS.gene83512:intron	40.0%
	CCTGTATTTATCCATCTCAC+AGG	+	chr2.2:210852-210871	MS.gene83512:intron	40.0%
	CCTGTGAGATGGATAAATAC+AGG	-	chr2.2:210855-210874	None:intergenic	40.0%
	CTCAATCGGAAGCGATAATT+TGG	+	chr2.2:209290-209309	MS.gene83512:CDS	40.0%
	GGAGTTCTTCATTGTCAACA+AGG	-	chr2.2:210472-210491	None:intergenic	40.0%
	GGTAGTTGCATTTATGATGC+AGG	+	chr2.2:211059-211078	MS.gene83512:CDS	40.0%
	GTAAAGGACAAGCTAGTAAG+TGG	+	chr2.2:210635-210654	MS.gene83512:intron	40.0%
	GTCATCTTGCTTCCAATTGT+AGG	+	chr2.2:210575-210594	MS.gene83512:CDS	40.0%
	TACAAGTGAAAACTCTGACG+AGG	+	chr2.2:209249-209268	MS.gene83512:CDS	40.0%
	TCCATAATCCAGTGAGAGAA+TGG	+	chr2.2:211595-211614	MS.gene83512:CDS	40.0%
	TCCATTCTCTCACTGGATTA+TGG	-	chr2.2:211599-211618	None:intergenic	40.0%
	TGAGATGGATAAATACAGGC+CGG	-	chr2.2:210851-210870	None:intergenic	40.0%
	TTACCCACCCAAAAACTACA+CGG	+	chr2.2:210360-210379	MS.gene83512:intron	40.0%
	TTCAGAAGAAACGATGGGAT+TGG	+	chr2.2:209727-209746	MS.gene83512:intron	40.0%
	TTTGGGTGGGTAAGGTTTAT+GGG	-	chr2.2:210353-210372	None:intergenic	40.0%
!	TAAAACGGGATGATGGTTGT+TGG	+	chr2.2:210905-210924	MS.gene83512:intron	40.0%
!	TCTGTTGCCGTGTAGTTTTT+GGG	-	chr2.2:210370-210389	None:intergenic	40.0%
!	TGAGACATTTTCCTGTGAGA+TGG	-	chr2.2:210866-210885	None:intergenic	40.0%
!	TGTGTTACTGGTCTATTGCA+GGG	+	chr2.2:210512-210531	MS.gene83512:intron	40.0%
!	TTCTGTTGCCGTGTAGTTTT+TGG	-	chr2.2:210371-210390	None:intergenic	40.0%
!	TTGTGTTACTGGTCTATTGC+AGG	+	chr2.2:210511-210530	MS.gene83512:intron	40.0%
!	TTTTATAGCATGGGCCAATG+TGG	-	chr2.2:210229-210248	None:intergenic	40.0%
!!	GCTTGCAATTTTGACGGTAT+GGG	+	chr2.2:209312-209331	MS.gene83512:intron	40.0%
!!	TTTTGGGTGGGTAAGGTTTA+TGG	-	chr2.2:210354-210373	None:intergenic	40.0%
!!!	CAGCCTTTTATTTTTGGTCC+TGG	+	chr2.2:210155-210174	MS.gene83512:intron	40.0%
	AAAAGCTAGCTCAAAGGAGG+AGG	-	chr2.2:211350-211369	None:intergenic	45.0%
	AAAGCTAGCTCAAAGGAGGA+GGG	-	chr2.2:211349-211368	None:intergenic	45.0%
	AAGTGAAAACTCTGACGAGG+AGG	+	chr2.2:209252-209271	MS.gene83512:CDS	45.0%
	ATCCAACAACCACACAGAAG+GGG	-	chr2.2:210969-210988	None:intergenic	45.0%
	ATCGTGTCGTGCAATGTCTA+TGG	+	chr2.2:209523-209542	MS.gene83512:intron	45.0%
	CAGCACAGTGATAAAAAGCG+TGG	-	chr2.2:211040-211059	None:intergenic	45.0%
	CATCCAACAACCACACAGAA+GGG	-	chr2.2:210970-210989	None:intergenic	45.0%
	CATCCCAAAAGCTAGCTCAA+AGG	-	chr2.2:211356-211375	None:intergenic	45.0%
	CATTGCACGACACGATTCTA+TGG	-	chr2.2:209519-209538	None:intergenic	45.0%
	CTCCCTTCAACTGGTGTAAA+TGG	-	chr2.2:209688-209707	None:intergenic	45.0%
	GTATGGGTATCAGTGTTGTC+TGG	+	chr2.2:209328-209347	MS.gene83512:intron	45.0%
	TATACCTCTATGGCATCCAC+AGG	-	chr2.2:209357-209376	None:intergenic	45.0%
	TCGTGTCGTGCAATGTCTAT+GGG	+	chr2.2:209524-209543	MS.gene83512:intron	45.0%
	TCTGCGGCATTTCCTACAAT+TGG	-	chr2.2:210590-210609	None:intergenic	45.0%
	TGTGTTAGGTGATGTTGAGC+TGG	-	chr2.2:209640-209659	None:intergenic	45.0%
	TTGTTAGTCCCACATCGCTT+AGG	+	chr2.2:211287-211306	MS.gene83512:intron	45.0%
	TTTGTAGATCCCCTTCTGTG+TGG	+	chr2.2:210957-210976	MS.gene83512:intron	45.0%
!	TTGGGTGAAATAGTGGAGAG+TGG	+	chr2.2:209798-209817	MS.gene83512:intron	45.0%
!!	CACGCTTTTTATCACTGTGC+TGG	+	chr2.2:211038-211057	MS.gene83512:CDS	45.0%
!!	GGCTTGCAATTTTGACGGTA+TGG	+	chr2.2:209311-209330	MS.gene83512:intron	45.0%
!!!	CCTCCTTTGAGCTAGCTTTT+GGG	+	chr2.2:211350-211369	MS.gene83512:intron	45.0%
!!!	GTGTAGTTTTTGGGTGGGTA+AGG	-	chr2.2:210361-210380	None:intergenic	45.0%
!!!	TCCTCCTTTGAGCTAGCTTT+TGG	+	chr2.2:211349-211368	MS.gene83512:intron	45.0%
!!!	TTGCCGTGTAGTTTTTGGGT+GGG	-	chr2.2:210366-210385	None:intergenic	45.0%
	AACTCCTGCCACATCCACAT+TGG	+	chr2.2:210212-210231	MS.gene83512:intron	50.0%
	ATCCCCTTCTGTGTGGTTGT+TGG	+	chr2.2:210964-210983	MS.gene83512:CDS	50.0%
	CAGTGTTGTCTGGATACCTG+TGG	+	chr2.2:209338-209357	MS.gene83512:intron	50.0%
	CCATCCAACAACCACACAGA+AGG	-	chr2.2:210971-210990	None:intergenic	50.0%
	CCCAAAAGCTAGCTCAAAGG+AGG	-	chr2.2:211353-211372	None:intergenic	50.0%
	CCCAAGAACCTAAGCGATGT+GGG	-	chr2.2:211298-211317	None:intergenic	50.0%
	CCCACATCGCTTAGGTTCTT+GGG	+	chr2.2:211295-211314	MS.gene83512:intron	50.0%
	CCTTCTGTGTGGTTGTTGGA+TGG	+	chr2.2:210968-210987	MS.gene83512:CDS	50.0%
	GATACCTGTGGATGCCATAG+AGG	+	chr2.2:209350-209369	MS.gene83512:intron	50.0%
	GATAGCACTTGCATGCTCTG+CGG	-	chr2.2:210606-210625	None:intergenic	50.0%
	GCGTGGCAGTCTCAAAAAGT+TGG	-	chr2.2:211023-211042	None:intergenic	50.0%
	GTCCAGAGTCCATTCATACC+AGG	-	chr2.2:210176-210195	None:intergenic	50.0%
	GTGGGTAAGGTTTATGGGCA+AGG	-	chr2.2:210348-210367	None:intergenic	50.0%
	GTGGTTGTTGGATGGTGCAT+GGG	+	chr2.2:210976-210995	MS.gene83512:CDS	50.0%
	TCCCACATCGCTTAGGTTCT+TGG	+	chr2.2:211294-211313	MS.gene83512:intron	50.0%
	TGTGGTTGTTGGATGGTGCA+TGG	+	chr2.2:210975-210994	MS.gene83512:CDS	50.0%
!	GATCAAGGACTAGCAGCTCT+AGG	+	chr2.2:209914-209933	MS.gene83512:intron	50.0%
!	GTCCTGGTATGAATGGACTC+TGG	+	chr2.2:210171-210190	MS.gene83512:intron	50.0%
!!	GTTGCCGTGTAGTTTTTGGG+TGG	-	chr2.2:210367-210386	None:intergenic	50.0%
	AGCATGGGCCAATGTGGATG+TGG	-	chr2.2:210223-210242	None:intergenic	55.0%
	GCCCAAGAACCTAAGCGATG+TGG	-	chr2.2:211299-211318	None:intergenic	55.0%
	GGACTCTGGACCATTCCCAA+GGG	+	chr2.2:210185-210204	MS.gene83512:intron	55.0%
	GGAGTTGCTTCCCTTGGGAA+TGG	-	chr2.2:210198-210217	None:intergenic	55.0%
	TGGACTCTGGACCATTCCCA+AGG	+	chr2.2:210184-210203	MS.gene83512:intron	55.0%
	TGGCAGGAGTTGCTTCCCTT+GGG	-	chr2.2:210203-210222	None:intergenic	55.0%
	GTGGCAGGAGTTGCTTCCCT+TGG	-	chr2.2:210204-210223	None:intergenic	60.0%
	TGGGCCAATGTGGATGTGGC+AGG	-	chr2.2:210219-210238	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	209241	211635	209241	ID=MS.gene83512
chr2.2	mRNA	209241	211635	209241	ID=MS.gene83512.t1;Parent=MS.gene83512
chr2.2	exon	209241	209327	209241	ID=MS.gene83512.t1.exon1;Parent=MS.gene83512.t1
chr2.2	CDS	209241	209327	209241	ID=cds.MS.gene83512.t1;Parent=MS.gene83512.t1
chr2.2	exon	210533	210649	210533	ID=MS.gene83512.t1.exon2;Parent=MS.gene83512.t1
chr2.2	CDS	210533	210649	210533	ID=cds.MS.gene83512.t1;Parent=MS.gene83512.t1
chr2.2	exon	210725	210778	210725	ID=MS.gene83512.t1.exon3;Parent=MS.gene83512.t1
chr2.2	CDS	210725	210778	210725	ID=cds.MS.gene83512.t1;Parent=MS.gene83512.t1
chr2.2	exon	210964	211080	210964	ID=MS.gene83512.t1.exon4;Parent=MS.gene83512.t1
chr2.2	CDS	210964	211080	210964	ID=cds.MS.gene83512.t1;Parent=MS.gene83512.t1
chr2.2	exon	211582	211635	211582	ID=MS.gene83512.t1.exon5;Parent=MS.gene83512.t1
chr2.2	CDS	211582	211635	211582	ID=cds.MS.gene83512.t1;Parent=MS.gene83512.t1

Gene Sequence

>MS.gene83512

GAAGTTGATACAAGTGAAAACTCTGACGAGGAGGAAGAACTTGAGTTAACTCAATCGGAAGCGATAATTTGGCTTGCAATTTTGACGGTATGGGTATCAGTGTTGTCTGGATACCTGTGGATGCCATAGAGGTATAGCTGTACAGTCACTTTCAGAATTTCTCAATCATTAAGCTTTTGTTATTCTCGTGGAATGTTGAATTTTTTCCTTTTAGTGTTCGCTTCATGTATTTTATTTTAGCATAAAACTTCAATCATAGAACATGTCCAATTACACCATAGAATCGTGTCGTGCAATGTCTATGGGTTTACCTTGGTCAAAGTCAAAGATCAAATAAAGAAAAGTAAAAAACTCATTTATACCCATAATTTTGGGTAAATAAAGAAGCATGTATGGCCAGCTCAACATCACCTAACACACTGTTACATGATACAATAAAACTAACCATTTACACCAGTTGAAGGGAGTTCCATATTTTTGGTACTATTCAGAAGAAACGATGGGATTGGTTCATAAGAGTGATGATGACTTTTGATATGGCATTGAGTTTTTAAGAATTGGGTGAAATAGTGGAGAGTGGTATTTATTCACTAATCAGTTTCATTTATCAAATGATGCTGATATAAATGTCGACATTTTACTCATAATTGTACTAAAATCTAGATCTAGATCAGATCAAGGACTAGCAGCTCTAGGCCAGCTCACTAAGATTTCAATAAATTAATTCTATTATACTATCCAACATAGAAAATCCTAATGATCTATCAGAAAGTATTTGTGGTCATTTGTCTACTGTTTTTTATGAACCACACATTGTATTTCGACTCGTAAATTTAATCTGTTGTTGGTTAAGCTGTTCTTTTGGTTAATATTGCAATTATACTATTCATATATAGATAACCTCTTCTCCTTATCAGCCTTTTATTTTTGGTCCTGGTATGAATGGACTCTGGACCATTCCCAAGGGAAGCAACTCCTGCCACATCCACATTGGCCCATGCTATAAAACAGAGTATTATTGGAAATCATGAGGCAGGATTCTAAAGTCATGAAAAGGAAATATGGAAACAGAGGAGGAAGGGTCTAAACACAGTTTAATTTAATCCTTGCCCATAAACCTTACCCACCCAAAAACTACACGGCAACAGAAATTTAATGATTTCTTTGCGAGCTATGTTTGCTTTTTGATTCGAGATTATATACCACTGAAACTTCTATTCATTCTTGTCCTTGTTGACAATGAAGAACTCCTTGTTGATCCATAAGCATCTTGTGTTACTGGTCTATTGCAGGGAGCATCTGAATCATTGAATATGTCAGTGGCTTTTATTAGCGTCATCTTGCTTCCAATTGTAGGAAATGCCGCAGAGCATGCAAGTGCTATCATGTTTGCTGTAAAGGACAAGCTAGTAAGTGGCTTTCATAGCCTATATTTTATTCCATGAATACTGTTTAATCCGTTAATGGATTCAACTTTTCCACAGGATATCACAATTGGAGTTGCTGTTGGATCATCAACCCAGATATCGATGTTTGTGGTATGGCCTTGAACTGTTACAAATAGTTCTTTGGGGGTTATTAATTTATTATACTATTATGTGAATAAACCGGCCTGTATTTATCCATCTCACAGGAAAATGTCTCAAGTTTATTAATTAACTTCTTAAAACGGGATGATGGTTGTTGGAAAAAAAATTGATTCTTGTTCTCTTTGAATTTGTAGATCCCCTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTCCAACTTTTTGAGACTGCCACGCTTTTTATCACTGTGCTGGTAGTTGCATTTATGATGCAGGTATGTGCTGCTTTCTTATTGACCCCTATGAAATTTTCTTGACAGCAATTGTTGATGTTCCTCACTTTATAAGGAATTAATGGATATTAGTTAGTTCTCGTCTAACTTGTTTAGCCAAACCAAAAAATTCATGTCTTACATATTGAAGTAGAATGTTAATTCCAAATGACTATGTTGAAGTTGGTTTTGAAGTTGTTTGTAGTTTGTTGTTAGTCCCACATCGCTTAGGTTCTTGGGCTGTCGAGTGTATAAATATGCTTGAGTACCCTCCTCCTTTGAGCTAGCTTTTGGGATGAGATCCAAGCTTATTTAACAGACTAGAGATATAGAGGGCCTAAGAAAATTCTGAGTTCATTCAATTATTTATCATGTCTTCGATTATTTATCATGTCTTCGATAGGAAACTCATATGAAGTATCTTACATGCTTATTGCTTATGAAACCTAATTCAAAAATTAGGCAAAAGTAATAATTATTACTCTTTTGCTTTTGTGCTTTCAGTGTGATACTGAATTCCATAATCCAGTGAGAGAATGGATTAAGTTGACTAGTTAA

Protein sequence

>MS.gene83512.t1

EVDTSENSDEEEELELTQSEAIIWLAILTGASESLNMSVAFISVILLPIVGNAAEHASAIMFAVKDKLDITIGVAVGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQCDTEFHNPVREWIKLTS