AlfalfaGEDB | MS.gene85370

M. sativa cultivar XinJiangDaYe / MS.gene85370

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85370.t1	XP_024631787.1	83.2	519	84	2	1	519	1	516	4.90E-212	747.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85370.t1	A0A396JB29	83.2	519	84	2	1	519	1	516	3.5e-212	747.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049351	MS.gene85370	0.822949	1.80E-53	-1.69E-46
MS.gene049427	MS.gene85370	0.817672	2.92E-52	-1.69E-46
MS.gene049609	MS.gene85370	0.800642	1.31E-48	-1.69E-46
MS.gene049661	MS.gene85370	0.829553	4.83E-55	-1.69E-46
MS.gene049662	MS.gene85370	0.813083	3.06E-51	-1.69E-46
MS.gene049805	MS.gene85370	0.808231	3.43E-50	-1.69E-46
MS.gene050076	MS.gene85370	0.822682	2.08E-53	-1.69E-46
MS.gene050397	MS.gene85370	0.851586	8.06E-61	-1.69E-46
MS.gene050432	MS.gene85370	0.828821	7.26E-55	-1.69E-46
MS.gene050772	MS.gene85370	0.806407	8.35E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85370.t1	MTR_2g038710	80.295	543	80	3	1	519	1	540	0.0	839

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85370.t1	AT5G56850	46.094	128	64	2	1	123	1	128	8.83e-31	126
MS.gene85370.t1	AT5G56850	46.094	128	64	2	1	123	1	128	1.25e-30	125
MS.gene85370.t1	AT5G56850	46.094	128	64	2	1	123	1	128	1.25e-30	125
MS.gene85370.t1	AT5G56850	42.683	82	46	1	43	123	5	86	8.90e-15	77.4

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Find 106 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCAGTACCTGAAACC+AGG	0.621327	2.1:+47341763	None:intergenic
AAACAACCGCAGAGAGTTAC+TGG	0.385233	2.1:-47339318	MS.gene85370:CDS
AAATGAATGCAGCTTCCATG+GGG	0.709804	2.1:-47341526	MS.gene85370:intron
AACAAAATAGAGGATGATAT+TGG	0.459901	2.1:-47339222	MS.gene85370:CDS
AACAGAGATGAAAATTCTGG+AGG	0.647018	2.1:-47338062	MS.gene85370:CDS
AACCAACAGGACTTGGTAAT+TGG	0.200786	2.1:+47339792	None:intergenic
AAGAAATAAAGATCAAGAAG+AGG	0.565984	2.1:-47338482	MS.gene85370:CDS
AATGTACCATATACTGAAAC+TGG	0.331288	2.1:-47338155	MS.gene85370:CDS
AATTAAGGACACCGTGCAAT+TGG	0.388794	2.1:-47338551	MS.gene85370:CDS
ACATTGCTAGGAGTTCTCCC+TGG	0.599976	2.1:+47339171	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTACCATATACTGAAAC+TGG	-	chr2.1:47341653-47341672	MS.gene85370:CDS	30.0%
ACAAATGTAATTGTTGGGTT+TGG	-	chr2.1:47339322-47339341	MS.gene85370:CDS	30.0%
AGAAATACTCTTAACCATCT+AGG	-	chr2.1:47341474-47341493	MS.gene85370:intron	30.0%
AGAACATTGCAGATCAATAT+AGG	-	chr2.1:47340374-47340393	MS.gene85370:intron	30.0%
AGCTCTATAGGATAATAAGT+AGG	-	chr2.1:47339072-47339091	MS.gene85370:intron	30.0%
ATCAAAGAAGTTTGGATTTC+CGG	-	chr2.1:47341520-47341539	MS.gene85370:intron	30.0%
CAAAAAGTGAATTCTTACAC+AGG	-	chr2.1:47341029-47341048	MS.gene85370:CDS	30.0%
CCACTTAAAAAGTTGACAAT+AGG	+	chr2.1:47338244-47338263	None:intergenic	30.0%
CTTACTTGATACTTTATTGG+AGG	+	chr2.1:47341078-47341097	None:intergenic	30.0%
CTTTCTATTGATCAACCTTA+GGG	+	chr2.1:47339482-47339501	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	47338031	47341799	47338031	ID=MS.gene85370
chr2.1	mRNA	47338031	47341799	47338031	ID=MS.gene85370.t1;Parent=MS.gene85370
chr2.1	exon	47341775	47341799	47341775	ID=MS.gene85370.t1.exon1;Parent=MS.gene85370.t1
chr2.1	CDS	47341775	47341799	47341775	ID=cds.MS.gene85370.t1;Parent=MS.gene85370.t1
chr2.1	exon	47341637	47341684	47341637	ID=MS.gene85370.t1.exon2;Parent=MS.gene85370.t1
chr2.1	CDS	47341637	47341684	47341637	ID=cds.MS.gene85370.t1;Parent=MS.gene85370.t1
chr2.1	exon	47341485	47341536	47341485	ID=MS.gene85370.t1.exon3;Parent=MS.gene85370.t1
chr2.1	CDS	47341485	47341536	47341485	ID=cds.MS.gene85370.t1;Parent=MS.gene85370.t1
chr2.1	exon	47341169	47341242	47341169	ID=MS.gene85370.t1.exon4;Parent=MS.gene85370.t1
chr2.1	CDS	47341169	47341242	47341169	ID=cds.MS.gene85370.t1;Parent=MS.gene85370.t1
chr2.1	exon	47340939	47341066	47340939	ID=MS.gene85370.t1.exon5;Parent=MS.gene85370.t1
chr2.1	CDS	47340939	47341066	47340939	ID=cds.MS.gene85370.t1;Parent=MS.gene85370.t1
chr2.1	exon	47340010	47340133	47340010	ID=MS.gene85370.t1.exon6;Parent=MS.gene85370.t1
chr2.1	CDS	47340010	47340133	47340010	ID=cds.MS.gene85370.t1;Parent=MS.gene85370.t1
chr2.1	exon	47339721	47339854	47339721	ID=MS.gene85370.t1.exon7;Parent=MS.gene85370.t1
chr2.1	CDS	47339721	47339854	47339721	ID=cds.MS.gene85370.t1;Parent=MS.gene85370.t1
chr2.1	exon	47339131	47339454	47339131	ID=MS.gene85370.t1.exon8;Parent=MS.gene85370.t1
chr2.1	CDS	47339131	47339454	47339131	ID=cds.MS.gene85370.t1;Parent=MS.gene85370.t1
chr2.1	exon	47338267	47338779	47338267	ID=MS.gene85370.t1.exon9;Parent=MS.gene85370.t1
chr2.1	CDS	47338267	47338779	47338267	ID=cds.MS.gene85370.t1;Parent=MS.gene85370.t1
chr2.1	exon	47338031	47338177	47338031	ID=MS.gene85370.t1.exon10;Parent=MS.gene85370.t1
chr2.1	CDS	47338031	47338177	47338031	ID=cds.MS.gene85370.t1;Parent=MS.gene85370.t1

Gene Sequence

>MS.gene85370

ATGCCAGGAACAATCCTGGTTTCAGGTACTGAATTTTATTTAGCATATACAATTCAAGCATCTCAACCACATGTTGATTTTCTTTTTGACTTCTCTATATTGATTTTTATTATAGTGCTGGAATTCATGGATCTTCCATTTTCTTCATCAACATCCATAAGGGGTATGCTATTGACTATTGTTCTAGCTTTTAAATTTTTCCTTATTCAACCTATTGTCAACTTTTTAAGTGGCTATTGTAACATTTTGGTAAATGAATGCAGCTTCCATGGGGAAAATGGAGTATGAAATCAATGACAAAGGAAACTTTTCCTTGTAAGTCTCTAATTTTAATTTTTTGAGATATTTGTATCATATAACCTATGTAGCATTGACACCGGACCTGACACTGACACTGACACATAAATATTGGTAACAATTTAAGAAAATTGTAGTTATTAAATGTCACAAATGAGCCAATGTCGGATTGATGTAAGACATGTCTTCTATCAGAAGTGTCGGTGCCAGATAAGTCGTACCAAATTCTATGTTGTAATCTGTTTGTTGTCTTGTTTCAGCCCCATAACTAGCCTTCGTGACGATTTGATTTTTAAAATTCAGGATTCTGAAGGGAATGAAATATCGCGTGCAGGTTATCTTTGATAACACCCTATTTGATAAAATGGTTCAATTAACTTTTCAAAGTTGATGAAAGATTAAATGTGTCTAACGTGATGCAGTAAATATCTGGCAGGAGTACATTTAAGGTTGATATTACAGAAAGGTGTTTGGGAAGACATGTTTCCACTTGGGGGAGGACAGTTGCATATGAAGCTGCAAGTCATACTTAGCGATGAAGAGCGTGACAGAATTCGTATGATGGTACTCATTTCTTTTCTTTATACAAAATGTTGTAATGCATTTATATATGCTTCTGAAATATCAATTTGCTTAAACAATGCAAACTAAAGGCCTTGGTAAGTTTGTATTATACTGATCCATTGATAGATAATTTGAAGATTATAGGATATCTTGTATAGGATTACCAAAATATTATTGGTTAGCTCTATAGGATAATAAGTAGGAAGAATGAACAAGTTCCAATCTCAAGTACGTTGCACCGCTTTTCTGAGGTATTGTTGGCTAAGTCTTATGTGAGCCCCATTGAAAAATGAGGGGCTAAAGGGCTTGTCAACTCTCGTGTCTGGCTTAGGCTTTCCTTTCCTTCTAGCTCAAATACGAAATCATCAACAACTATCTAATAGTAGATGATTGAAATGTACACAACTAGAAGAACCATAAGTTAATACAAACAAATGTAATTGTTGGGTTTGGTTAATAGATTACTGATATGTGGGCAGCTTGCTCGAGCGGGACCGTGACTGGGGTGGGGGGGCAAAGTCCCAGCAGTATGATTTAGAAGTAATCTTGTAAAATGGACCGTATTAAACACAATTATATCATGTAAACCCTAAGGTTGATCAATAGAAAGGTACTAAAACCGCTCTACAGTTAGAGAGGTATAGGCAGAATTGGCCGAACTCCGTGATCAAATATTGTATGTTCTCTATTTGCGTTTTTTCGTATTTATGTTACTTTTGAACCGGCTTTCTGTTCTAACAGTAATTAACTTAAGGAGAGATCATTAAAAGTTGTGGATTATTAAAATTAATTTTTGATTTGGCAGAGACAATCTGCATTAAAGAAAAAACAAGATGAGCTTCTTAACAGCCAGAGAGGTGCAGAAAGTGACAGACGTATGATTATCAGCAACGCAGCATTACCCTTAAGCACTAGTGATGAGGTGTCAGGTTTGATCTTACTTAGCTGATTATAGAAACAAAATAAACACTTGAATCAAAAATAAATAATGAATGTATAAAATGTTTAATAGTTATGAATTTGGTCCCACATACATTTCCTCAAAGGCTTTCTCCTGATGTTTTAAGTGCTCCATCTTCTCAAGAATCATCACCAAAGCAACATCTTCAACAAGAAGCAGTTTCCCAATTACCAAGTCCTGTTGGTTTCTCCGATGACAAAGAAAGTTCCACAACAAATGTTGTTGAGGCGCACCTTGAACAGAAACAGCTAAACTCAGTTAAGGATTAATTAACTTGCAGCAGTCTCTTTCTATGTAGCACTGACACTTCGGATTAAAGGCACGTGTCTGTTGTCAGACACATGTCAGTGTCTGACACAACACCGATATCATCCACTTTCGCTTTCTTAAATTATCACTGATGCCTACATGTTACTGTGTGTCCGGTGTCCGTGCTTGTGCTTCATAGGTCTCTTTTCATACCAACAAGAAGACATTGGAAAATGTACTATTGTTTGTTTAATGGTCATTTTACATGTTTTAGAACATTGCAGATCAATATAGGGAGACCTCATCAACAAAACCTGTGTCACAAGCAGTTAATATCATTCAGTTACAGCGTAGCGATAAGAAGCCTGCCAATGAGTCATCATCTGAGAAACAACCGCAGAGAGTTACTGGTTCAGAAGAAAAAGAAAAGATGAATTCTTTAAGATCAGAAAAAGCTATTGTTGTTACAAATAATCTGATACAAAACAAAATAGAGGATGATATTGGTCTTCAATATTCCGAGAAGAAGGTTCAACCAGGGAGAACTCCTAGCAATGTTAGGAAAATGATAAGTGCTTTTGAAAGTGTTCCCCCTAAGGTATAGTTAGGCCTGTTTGGATTGATTTATTTGACTTTGTCTACTGACATAAGCACAAGTAAGGATGTTTGGAACAGATCATGGAAACAACTTATGAAACGTCCATAATCTATTTTAAACTTATTTCCATAAGCTCTCCATGATAGCTAGCTTATGTGAATACAATTTGACTTTATTTTAACTTTCCTTACACAAATAGCTTATACATAAGAACTTATATGATAGTATCTTATGTTAGAAGCGTTTAATTAAGCTGTTTATCCAAACAATGCCCAATTGTTGTGCCCTTGTGCATGTACAGTATGATCAATACATTTTTGCCAGTTTTTCAAAAAGTGAATTCTTACACAGGATATGAGGTCTCATATTAAACCACCTCCAATAAAGTATCAAGTAAGTCCAAATGAAAAGAAAGATTCTTCTGAGAGTCAACATTTGGAGCAGGATCGGTCATTGAACACAGAATCAGGAGGCTTCTTACAAGATAGGGTGAAAAGTGCTTCCTTGGTAAGAAACTTGCAACAGGTTCCAGTACATATTGAAGAAAGTAAAGCGAAAATTAAGGACACCGTGCAATTGGAGTTGAGCCCTATAAATATACCGAACAAACAAACAGATTCAAATGCAAGAAATAAAGATCAAGAAGAGGAGTCAAATAAAAAAGTAGCAAATAGTAGAGATCAAGAGGAAGAGAGAAATAAAAGAAATTTGATGAGAACATCTACATTTGAAACAGTTACAGTTTCAGGAAACATGCCTTTGGAGCTCTCTGATAGAAATACTCTTAACCATCTAGGCCACGATAAAAAGTACTCAAGCCATCAAAGAAGTTTGGATTTCCGGAAAATAGAAAATGTGGATAAGGTATTACTATGTGTTGTATATGGTTGAGCACTAAAGATACCATTAATATCTTTGTTAATAAATCACAGTATGTATCTTTTGTGTTTCAGAATGTACCATATACTGAAACTGGAACTGAGGTGAGCAAGTATGAAAAGGTGCAGGACATTGAAGAATCAAAAACCAGTACTTCTACTGATGATAACAGAGATGAAAATTCTGGAGGACCATTTGATCAGGTTATCATCAACTTTTAA

Protein sequence

>MS.gene85370.t1

MPGTILVSVLEFMDLPFSSSTSIRASMGKMEYEINDKGNFSFPITSLRDDLIFKIQDSEGNEISRAGVHLRLILQKGVWEDMFPLGGGQLHMKLQVILSDEERDRIRMMRQSALKKKQDELLNSQRGAESDRRMIISNAALPLSTSDEVSESSPKQHLQQEAVSQLPSPVGFSDDKESSTTNVVEAHLEQKQLNSNIADQYRETSSTKPVSQAVNIIQLQRSDKKPANESSSEKQPQRVTGSEEKEKMNSLRSEKAIVVTNNLIQNKIEDDIGLQYSEKKVQPGRTPSNVRKMISAFESVPPKDMRSHIKPPPIKYQVSPNEKKDSSESQHLEQDRSLNTESGGFLQDRVKSASLVRNLQQVPVHIEESKAKIKDTVQLELSPINIPNKQTDSNARNKDQEEESNKKVANSRDQEEERNKRNLMRTSTFETVTVSGNMPLELSDRNTLNHLGHDKKYSSHQRSLDFRKIENVDKNVPYTETGTEVSKYEKVQDIEESKTSTSTDDNRDENSGGPFDQVIINF