Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89060.t1 | XP_003597838.1 | 96.8 | 158 | 5 | 0 | 1 | 158 | 1 | 158 | 3.90E-80 | 307.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89060.t1 | Q8LBK6 | 63.4 | 164 | 54 | 3 | 1 | 158 | 5 | 168 | 1.0e-52 | 207.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89060.t1 | G7IMH4 | 96.8 | 158 | 5 | 0 | 1 | 158 | 1 | 158 | 2.8e-80 | 307.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049230 | MS.gene89060 | 0.825429 | 4.71E-54 | -1.69E-46 |
| MS.gene049378 | MS.gene89060 | 0.819868 | 9.27E-53 | -1.69E-46 |
| MS.gene04984 | MS.gene89060 | 0.830336 | 3.11E-55 | -1.69E-46 |
| MS.gene050114 | MS.gene89060 | 0.808701 | 2.72E-50 | -1.69E-46 |
| MS.gene050303 | MS.gene89060 | 0.829636 | 4.61E-55 | -1.69E-46 |
| MS.gene050623 | MS.gene89060 | -0.800998 | 1.11E-48 | -1.69E-46 |
| MS.gene050719 | MS.gene89060 | 0.833074 | 6.57E-56 | -1.69E-46 |
| MS.gene050721 | MS.gene89060 | 0.834019 | 3.82E-56 | -1.69E-46 |
| MS.gene050724 | MS.gene89060 | 0.818755 | 1.66E-52 | -1.69E-46 |
| MS.gene051452 | MS.gene89060 | 0.83338 | 5.51E-56 | -1.69E-46 |
| MS.gene051757 | MS.gene89060 | 0.833175 | 6.20E-56 | -1.69E-46 |
| MS.gene052176 | MS.gene89060 | 0.826056 | 3.34E-54 | -1.69E-46 |
| MS.gene052376 | MS.gene89060 | 0.809681 | 1.68E-50 | -1.69E-46 |
| MS.gene052426 | MS.gene89060 | 0.803624 | 3.19E-49 | -1.69E-46 |
| MS.gene052502 | MS.gene89060 | 0.803194 | 3.92E-49 | -1.69E-46 |
| MS.gene052826 | MS.gene89060 | 0.804122 | 2.51E-49 | -1.69E-46 |
| MS.gene052856 | MS.gene89060 | 0.805939 | 1.05E-49 | -1.69E-46 |
| MS.gene053216 | MS.gene89060 | 0.82218 | 2.72E-53 | -1.69E-46 |
| MS.gene055441 | MS.gene89060 | 0.828715 | 7.71E-55 | -1.69E-46 |
| MS.gene055603 | MS.gene89060 | 0.825228 | 5.26E-54 | -1.69E-46 |
| MS.gene056506 | MS.gene89060 | 0.802947 | 4.41E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene89060 | 0.813593 | 2.37E-51 | -1.69E-46 |
| MS.gene056849 | MS.gene89060 | 0.807682 | 4.49E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene89060 | 0.808574 | 2.90E-50 | -1.69E-46 |
| MS.gene057079 | MS.gene89060 | 0.810819 | 9.54E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene89060 | 0.803977 | 2.69E-49 | -1.69E-46 |
| MS.gene057194 | MS.gene89060 | 0.800328 | 1.52E-48 | -1.69E-46 |
| MS.gene05795 | MS.gene89060 | 0.83004 | 3.67E-55 | -1.69E-46 |
| MS.gene058084 | MS.gene89060 | 0.815161 | 1.07E-51 | -1.69E-46 |
| MS.gene058146 | MS.gene89060 | 0.805897 | 1.07E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene89060 | 0.819942 | 8.91E-53 | -1.69E-46 |
| MS.gene058906 | MS.gene89060 | 0.804427 | 2.17E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene89060 | 0.832615 | 8.55E-56 | -1.69E-46 |
| MS.gene06011 | MS.gene89060 | 0.804983 | 1.66E-49 | -1.69E-46 |
| MS.gene060297 | MS.gene89060 | 0.830335 | 3.11E-55 | -1.69E-46 |
| MS.gene060586 | MS.gene89060 | 0.85762 | 1.44E-62 | -1.69E-46 |
| MS.gene060879 | MS.gene89060 | 0.808736 | 2.67E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene89060 | 0.806222 | 9.13E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89060.t1 | MTR_2g103130 | 96.835 | 158 | 5 | 0 | 1 | 158 | 1 | 158 | 4.17e-114 | 320 |
| MS.gene89060.t1 | MTR_4g088905 | 44.715 | 123 | 65 | 1 | 34 | 153 | 261 | 383 | 1.24e-29 | 112 |
| MS.gene89060.t1 | MTR_4g088905 | 45.545 | 101 | 55 | 0 | 53 | 153 | 154 | 254 | 1.59e-28 | 109 |
| MS.gene89060.t1 | MTR_4g088905 | 46.739 | 92 | 48 | 1 | 63 | 153 | 400 | 491 | 4.63e-25 | 100 |
| MS.gene89060.t1 | MTR_7g079520 | 42.105 | 95 | 55 | 0 | 55 | 149 | 79 | 173 | 9.23e-27 | 99.8 |
| MS.gene89060.t1 | MTR_4g016930 | 36.458 | 96 | 58 | 1 | 55 | 147 | 196 | 291 | 5.54e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89060.t1 | AT3G15660 | 63.415 | 164 | 54 | 3 | 1 | 158 | 5 | 168 | 2.42e-73 | 217 |
| MS.gene89060.t1 | AT3G15660 | 63.415 | 164 | 54 | 3 | 1 | 158 | 5 | 168 | 2.42e-73 | 217 |
| MS.gene89060.t1 | AT4G04950 | 46.535 | 101 | 54 | 0 | 54 | 154 | 152 | 252 | 1.43e-30 | 115 |
| MS.gene89060.t1 | AT4G04950 | 46.226 | 106 | 55 | 1 | 50 | 153 | 276 | 381 | 3.34e-27 | 105 |
| MS.gene89060.t1 | AT4G04950 | 45.000 | 100 | 55 | 0 | 54 | 153 | 389 | 488 | 3.36e-26 | 103 |
| MS.gene89060.t1 | AT3G54900 | 41.525 | 118 | 64 | 2 | 42 | 155 | 55 | 171 | 5.70e-29 | 105 |
| MS.gene89060.t1 | AT2G38270 | 41.000 | 100 | 56 | 1 | 55 | 151 | 193 | 292 | 2.90e-21 | 87.8 |
Find 26 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAACTAGTTCCTGTTATTA+TGG | 0.213298 | 2.4:+2177823 | MS.gene89060:CDS |
| AAAATGTTCCTAGCACTTAA+AGG | 0.239296 | 2.4:-2179425 | None:intergenic |
| TTCATTAAGGGAGAGTTTAT+TGG | 0.294164 | 2.4:+2180287 | MS.gene89060:CDS |
| ACTAATAAAATTGAGAATTC+TGG | 0.294307 | 2.4:+2177904 | MS.gene89060:CDS |
| CCCTTCATGTAAATCATAAC+AGG | 0.387480 | 2.4:-2178067 | None:intergenic |
| AATCCACACTGTGGGAAATC+AGG | 0.415306 | 2.4:-2178094 | None:intergenic |
| GTATCTCATTCCATAATAAC+AGG | 0.425034 | 2.4:-2177833 | None:intergenic |
| TCCTGTTATGATTTACATGA+AGG | 0.434713 | 2.4:+2178066 | MS.gene89060:CDS |
| TTTGTCAAGTATTATTGAGC+AGG | 0.435419 | 2.4:+2177933 | MS.gene89060:CDS |
| CAGATGTTCCTTTAAGTGCT+AGG | 0.438137 | 2.4:+2179417 | MS.gene89060:intron |
| CTTGTAGAGTGGTGAGTTGA+AGG | 0.456905 | 2.4:+2180414 | MS.gene89060:intron |
| ATTAAGGGAGAGTTTATTGG+TGG | 0.524548 | 2.4:+2180290 | MS.gene89060:CDS |
| ATGAAAACTTGTGGAAATGT+TGG | 0.528223 | 2.4:-2180269 | None:intergenic |
| CCTGTTATGATTTACATGAA+GGG | 0.540704 | 2.4:+2178067 | MS.gene89060:CDS |
| AGCGATTCCCTTGAAAAGAA+TGG | 0.556100 | 2.4:-2176485 | None:intergenic |
| AAAATGCTGTAAAAGCCTAC+AGG | 0.564696 | 2.4:+2179465 | MS.gene89060:CDS |
| TATTGTTCTTAGTATGCACC+AGG | 0.565729 | 2.4:+2180319 | MS.gene89060:CDS |
| TGGAATGAGATACACAACTA+AGG | 0.585500 | 2.4:+2177843 | MS.gene89060:CDS |
| CTTGAAAAGAATGGTCGCCA+TGG | 0.597220 | 2.4:-2176476 | None:intergenic |
| TAATAATGTACAGGATGTCA+AGG | 0.615496 | 2.4:+2178039 | MS.gene89060:intron |
| GAGAACTAAATCCACACTGT+GGG | 0.625350 | 2.4:-2178102 | None:intergenic |
| TCTCCCTTAATGAAAACTTG+TGG | 0.625424 | 2.4:-2180278 | None:intergenic |
| GTACCTGATTTCCCACAGTG+TGG | 0.627551 | 2.4:+2178091 | MS.gene89060:CDS |
| GGTTGGAAAGCTTACACGTG+TGG | 0.644303 | 2.4:-2176521 | None:intergenic |
| TTTGAAGTCATCATGTGTGT+CGG | 0.650291 | 2.4:-2177878 | None:intergenic |
| AGAGAACTAAATCCACACTG+TGG | 0.712972 | 2.4:-2178103 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAAAAAATTAAGTTAA+AGG | + | chr2.4:2179581-2179600 | MS.gene89060:intron | 10.0% |
| !!! | AATGTTAATTTTAAAAAACT+AGG | - | chr2.4:2179551-2179570 | None:intergenic | 10.0% |
| !!! | CTTTATTTTATATTTTGTTA+TGG | - | chr2.4:2176911-2176930 | None:intergenic | 10.0% |
| !! | AAAAAAAGAAGAAGAAAATT+AGG | - | chr2.4:2176558-2176577 | None:intergenic | 15.0% |
| !! | AAAAAAGAAGAAGAAAATTA+GGG | - | chr2.4:2176557-2176576 | None:intergenic | 15.0% |
| !! | GAATTATGTTAATGTTAAAA+TGG | + | chr2.4:2176726-2176745 | MS.gene89060:intron | 15.0% |
| !! | GGTAAATTTAAAAAGAAAAA+GGG | - | chr2.4:2177346-2177365 | None:intergenic | 15.0% |
| !! | TGGTAAATTTAAAAAGAAAA+AGG | - | chr2.4:2177347-2177366 | None:intergenic | 15.0% |
| !! | TTTATTTATCAGATTGAAAT+GGG | + | chr2.4:2176677-2176696 | MS.gene89060:intron | 15.0% |
| !!! | GAAACAAAAACAATTTTAAA+GGG | + | chr2.4:2179145-2179164 | MS.gene89060:intron | 15.0% |
| !!! | GTTAAAGTTTTAAAACAATA+TGG | + | chr2.4:2178130-2178149 | MS.gene89060:CDS | 15.0% |
| !!! | TCAATTGTTTAATTTACTTA+TGG | + | chr2.4:2179269-2179288 | MS.gene89060:intron | 15.0% |
| !!! | TTTTATTTATCAGATTGAAA+TGG | + | chr2.4:2176676-2176695 | MS.gene89060:intron | 15.0% |
| !! | ACTAATAAAATTGAGAATTC+TGG | + | chr2.4:2177904-2177923 | MS.gene89060:CDS | 20.0% |
| !! | AGGGAAAAGTAAATTATAAT+TGG | - | chr2.4:2180169-2180188 | None:intergenic | 20.0% |
| !! | ATAATATGCAATTATGCTAA+AGG | - | chr2.4:2176879-2176898 | None:intergenic | 20.0% |
| !! | CAATTATTAAGCTGTTAAAA+GGG | - | chr2.4:2180188-2180207 | None:intergenic | 20.0% |
| !! | TCAATTATTAAGCTGTTAAA+AGG | - | chr2.4:2180189-2180208 | None:intergenic | 20.0% |
| !! | TCTGATCTTCATAATATATT+TGG | - | chr2.4:2179704-2179723 | None:intergenic | 20.0% |
| !! | TTATGTTAATGTTAAAATGG+AGG | + | chr2.4:2176729-2176748 | MS.gene89060:intron | 20.0% |
| !!! | AAAACACATTTGAAACTTAA+AGG | - | chr2.4:2179248-2179267 | None:intergenic | 20.0% |
| !!! | AAATCTTGAAAAGCTTTTTT+AGG | + | chr2.4:2176823-2176842 | MS.gene89060:intron | 20.0% |
| !!! | AGAATTTTGATATCCTTTAA+TGG | + | chr2.4:2179818-2179837 | MS.gene89060:intron | 20.0% |
| !!! | CTTTATTTTATCTTTTGCTA+CGG | - | chr2.4:2177474-2177493 | None:intergenic | 20.0% |
| !!! | GAATTCTCAATTTTATTAGT+TGG | - | chr2.4:2177904-2177923 | None:intergenic | 20.0% |
| !!! | GGAAACAAAAACAATTTTAA+AGG | + | chr2.4:2179144-2179163 | MS.gene89060:intron | 20.0% |
| !!! | TATTTTCTTTGCATTTAAAG+TGG | + | chr2.4:2180073-2180092 | MS.gene89060:intron | 20.0% |
| !!! | TTTGGTTTTATTATGTTGAA+TGG | + | chr2.4:2179073-2179092 | MS.gene89060:intron | 20.0% |
| !!! | TTTTAGTGTTACGATTTAAA+TGG | + | chr2.4:2177720-2177739 | MS.gene89060:intron | 20.0% |
| ! | AAACTATACGAGAAACTATT+AGG | + | chr2.4:2178877-2178896 | MS.gene89060:intron | 25.0% |
| ! | AATGTAAAGTGACTTATGTT+TGG | + | chr2.4:2177061-2177080 | MS.gene89060:intron | 25.0% |
| ! | ACACGATTGATATTTGAAAA+TGG | - | chr2.4:2179797-2179816 | None:intergenic | 25.0% |
| ! | ATAATGTTTGTAGAAAAGTG+GGG | - | chr2.4:2178629-2178648 | None:intergenic | 25.0% |
| ! | CATAATGTTTGTAGAAAAGT+GGG | - | chr2.4:2178630-2178649 | None:intergenic | 25.0% |
| ! | GATCATTATGATTAAATTGC+AGG | - | chr2.4:2179189-2179208 | None:intergenic | 25.0% |
| ! | GGTGTGAAATATTGTTAAAT+AGG | - | chr2.4:2180394-2180413 | None:intergenic | 25.0% |
| ! | TAACTTATGAAGACAGTTTA+TGG | - | chr2.4:2177517-2177536 | None:intergenic | 25.0% |
| ! | TATTCACAGTAAATTTCTGT+AGG | - | chr2.4:2179295-2179314 | None:intergenic | 25.0% |
| ! | TCTAACTTGAAGCTAAAATT+TGG | - | chr2.4:2177155-2177174 | None:intergenic | 25.0% |
| ! | TCTGATAAATAAAACTTGCA+AGG | - | chr2.4:2176670-2176689 | None:intergenic | 25.0% |
| ! | TTAATGGCTATGAAATTCAA+TGG | + | chr2.4:2179834-2179853 | MS.gene89060:intron | 25.0% |
| ! | TTGAATTTCATAGCCATTAA+AGG | - | chr2.4:2179834-2179853 | None:intergenic | 25.0% |
| !! | ATTGTGTTTTCTGTATGTAA+CGG | + | chr2.4:2177772-2177791 | MS.gene89060:intron | 25.0% |
| !! | ATTTCCACAAGTTTTCATTA+AGG | + | chr2.4:2180274-2180293 | MS.gene89060:CDS | 25.0% |
| !! | GTTTATGTAATCTCATGTTT+TGG | + | chr2.4:2179055-2179074 | MS.gene89060:intron | 25.0% |
| !! | TTTCCACAAGTTTTCATTAA+GGG | + | chr2.4:2180275-2180294 | MS.gene89060:CDS | 25.0% |
| !! | TTTTTCCATTTTACGGTATT+GGG | + | chr2.4:2176605-2176624 | MS.gene89060:intron | 25.0% |
| !!! | AGAAAATTAGGGTTTGTTTT+AGG | - | chr2.4:2176546-2176565 | None:intergenic | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | - | chr2.4:2177220-2177239 | None:intergenic | 25.0% |
| !!! | ATTTTAAAGGGTTAGTACAT+AGG | + | chr2.4:2179157-2179176 | MS.gene89060:intron | 25.0% |
| !!! | GAAAATTAGGGTTTGTTTTA+GGG | - | chr2.4:2176545-2176564 | None:intergenic | 25.0% |
| !!! | GTATGTTCAGTTTCATTTTT+TGG | - | chr2.4:2177270-2177289 | None:intergenic | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | - | chr2.4:2178593-2178612 | None:intergenic | 25.0% |
| AAAATGTTCCTAGCACTTAA+AGG | - | chr2.4:2179428-2179447 | None:intergenic | 30.0% | |
| AAATTGATCAACTCTTGCAA+TGG | - | chr2.4:2180352-2180371 | None:intergenic | 30.0% | |
| AACCATTAGAAAGGATTTAG+AGG | - | chr2.4:2178451-2178470 | None:intergenic | 30.0% | |
| AATAAGGAGAATAGATCAGA+TGG | + | chr2.4:2178815-2178834 | MS.gene89060:intron | 30.0% | |
| AATTGATCAACTCTTGCAAT+GGG | - | chr2.4:2180351-2180370 | None:intergenic | 30.0% | |
| ACATATATCAACAACGTACA+AGG | - | chr2.4:2180012-2180031 | None:intergenic | 30.0% | |
| ACATGAGATTACATAAACAC+AGG | - | chr2.4:2179053-2179072 | None:intergenic | 30.0% | |
| ATATAATTTCTCAGGTAGCA+AGG | - | chr2.4:2178184-2178203 | None:intergenic | 30.0% | |
| ATGAAAACTTGTGGAAATGT+TGG | - | chr2.4:2180272-2180291 | None:intergenic | 30.0% | |
| ATGATCTTCAGATTATTGAC+AGG | - | chr2.4:2179868-2179887 | None:intergenic | 30.0% | |
| CAATTCTGTAAGTTTCATCA+TGG | + | chr2.4:2177024-2177043 | MS.gene89060:intron | 30.0% | |
| CCATAATGTTTGTAGAAAAG+TGG | - | chr2.4:2178631-2178650 | None:intergenic | 30.0% | |
| CCTGTTATGATTTACATGAA+GGG | + | chr2.4:2178067-2178086 | MS.gene89060:CDS | 30.0% | |
| CTAACTAGTTCCTGTTATTA+TGG | + | chr2.4:2177823-2177842 | MS.gene89060:CDS | 30.0% | |
| CTACATGAGAATTCTATGAA+GGG | + | chr2.4:2177979-2177998 | MS.gene89060:intron | 30.0% | |
| GAAATTATATCCTCTGAATC+TGG | + | chr2.4:2178194-2178213 | MS.gene89060:intron | 30.0% | |
| GAGGAAAATGAAGAAAAGAA+AGG | - | chr2.4:2176634-2176653 | None:intergenic | 30.0% | |
| GATTTCAACATATCTAGTTG+TGG | + | chr2.4:2179958-2179977 | MS.gene89060:intron | 30.0% | |
| GCTCTATCAAAAACCATATT+TGG | + | chr2.4:2178411-2178430 | MS.gene89060:intron | 30.0% | |
| GTATCTCATTCCATAATAAC+AGG | - | chr2.4:2177836-2177855 | None:intergenic | 30.0% | |
| GTTAGAATCAATTCTTCTAG+AGG | + | chr2.4:2177169-2177188 | MS.gene89060:intron | 30.0% | |
| TAACCTGCACAAACTTATAT+AGG | + | chr2.4:2179216-2179235 | MS.gene89060:intron | 30.0% | |
| TAATAATGTACAGGATGTCA+AGG | + | chr2.4:2178039-2178058 | MS.gene89060:intron | 30.0% | |
| TAATGTTTGTAGAAAAGTGG+GGG | - | chr2.4:2178628-2178647 | None:intergenic | 30.0% | |
| TACGATAGCAAAACAATTTC+AGG | - | chr2.4:2176770-2176789 | None:intergenic | 30.0% | |
| TATACGAGAAACTATTAGGA+AGG | + | chr2.4:2178881-2178900 | MS.gene89060:intron | 30.0% | |
| TCAAATCAGTCAATTCAAAC+AGG | + | chr2.4:2177644-2177663 | MS.gene89060:intron | 30.0% | |
| TCCTGTTATGATTTACATGA+AGG | + | chr2.4:2178066-2178085 | MS.gene89060:CDS | 30.0% | |
| TCTACATGAGAATTCTATGA+AGG | + | chr2.4:2177978-2177997 | MS.gene89060:intron | 30.0% | |
| TGTGCTTATGTGATTTGAAA+AGG | + | chr2.4:2178267-2178286 | MS.gene89060:intron | 30.0% | |
| TGTGGAAATAAGCTGAAAAT+AGG | + | chr2.4:2177549-2177568 | MS.gene89060:intron | 30.0% | |
| TGTTAGAAGAGTAGATCAAA+TGG | - | chr2.4:2178526-2178545 | None:intergenic | 30.0% | |
| TTCAGAGGATATAATTTCTC+AGG | - | chr2.4:2178192-2178211 | None:intergenic | 30.0% | |
| TTCATTAAGGGAGAGTTTAT+TGG | + | chr2.4:2180287-2180306 | MS.gene89060:CDS | 30.0% | |
| TTCCTATGTGTTTGATTATG+TGG | + | chr2.4:2176976-2176995 | MS.gene89060:intron | 30.0% | |
| TTGAAGAGGATGAAATCAAA+AGG | - | chr2.4:2179117-2179136 | None:intergenic | 30.0% | |
| TTTGTCAAGTATTATTGAGC+AGG | + | chr2.4:2177933-2177952 | MS.gene89060:CDS | 30.0% | |
| ! | AAAAGCATGGAACTTTATGA+TGG | - | chr2.4:2176589-2176608 | None:intergenic | 30.0% |
| ! | AATGAGTTGGAGAAAAAACA+TGG | + | chr2.4:2178915-2178934 | MS.gene89060:intron | 30.0% |
| ! | ATTTGTTGAATGTAGCTGAT+GGG | + | chr2.4:2178657-2178676 | MS.gene89060:intron | 30.0% |
| ! | ATTTTCAAACATAGTAGCAC+CGG | + | chr2.4:2180129-2180148 | MS.gene89060:intron | 30.0% |
| ! | CTACCATCTTTTCTACTATA+GGG | - | chr2.4:2178743-2178762 | None:intergenic | 30.0% |
| ! | CTTTTTCCATTTTACGGTAT+TGG | + | chr2.4:2176604-2176623 | MS.gene89060:intron | 30.0% |
| ! | GTTTCTCGTATAGTTTTTCT+AGG | - | chr2.4:2178873-2178892 | None:intergenic | 30.0% |
| ! | TAATTTGCAGCTTATAGCAT+AGG | + | chr2.4:2177412-2177431 | MS.gene89060:intron | 30.0% |
| ! | TACCATCTTTTCTACTATAG+GGG | - | chr2.4:2178742-2178761 | None:intergenic | 30.0% |
| ! | TCTACCAACTTTTCTACTAT+AGG | + | chr2.4:2178597-2178616 | MS.gene89060:intron | 30.0% |
| ! | TCTACCATCTTTTCTACTAT+AGG | - | chr2.4:2178744-2178763 | None:intergenic | 30.0% |
| ! | TCTTTGCATTTAAAGTGGTA+TGG | + | chr2.4:2180078-2180097 | MS.gene89060:intron | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr2.4:2178935-2178954 | MS.gene89060:intron | 30.0% |
| ! | TTTACAGCATTTTTCACTTC+AGG | - | chr2.4:2179458-2179477 | None:intergenic | 30.0% |
| ! | TTTGATTTCATCCTCTTCAA+CGG | + | chr2.4:2179117-2179136 | MS.gene89060:intron | 30.0% |
| !! | AATTTGTTGAATGTAGCTGA+TGG | + | chr2.4:2178656-2178675 | MS.gene89060:intron | 30.0% |
| !! | CCACTTTTCTACAAACATTA+TGG | + | chr2.4:2178628-2178647 | MS.gene89060:intron | 30.0% |
| !! | GTGACTTGTTAATAATGTAC+AGG | + | chr2.4:2178030-2178049 | MS.gene89060:intron | 30.0% |
| !! | TGAATATGACTTAGCTTTAC+TGG | + | chr2.4:2179342-2179361 | MS.gene89060:intron | 30.0% |
| !!! | TACACCTCTAGAATCAATTT+TGG | + | chr2.4:2177239-2177258 | MS.gene89060:intron | 30.0% |
| !!! | TCCATGCTTTTTCCATTTTA+CGG | + | chr2.4:2176598-2176617 | MS.gene89060:intron | 30.0% |
| !!! | TGAAGGGTTTATTGTTTTGA+TGG | + | chr2.4:2177995-2178014 | MS.gene89060:intron | 30.0% |
| !!! | TGTTCAGTTTCATTTTTTGG+AGG | - | chr2.4:2177267-2177286 | None:intergenic | 30.0% |
| AAAATGCTGTAAAAGCCTAC+AGG | + | chr2.4:2179465-2179484 | MS.gene89060:CDS | 35.0% | |
| AAACTAGACATAGGTGGTTT+CGG | + | chr2.4:2178763-2178782 | MS.gene89060:intron | 35.0% | |
| AACCCCTATAGTAGAAAAGA+TGG | + | chr2.4:2178737-2178756 | MS.gene89060:intron | 35.0% | |
| ACCGTAAAATGGAAAAAGCA+TGG | - | chr2.4:2176602-2176621 | None:intergenic | 35.0% | |
| ACGACATTAGATAGAGAGTT+GGG | + | chr2.4:2178712-2178731 | MS.gene89060:intron | 35.0% | |
| ACTGTCTTCATAAGTTATCC+TGG | + | chr2.4:2177520-2177539 | MS.gene89060:intron | 35.0% | |
| AGAGGCAAAATCAATTATCC+TGG | + | chr2.4:2177187-2177206 | MS.gene89060:intron | 35.0% | |
| AGATCAAATGGAGAAGAGTA+AGG | - | chr2.4:2178514-2178533 | None:intergenic | 35.0% | |
| AGATGGTAGAAACTAGACAT+AGG | + | chr2.4:2178754-2178773 | MS.gene89060:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | - | chr2.4:2178604-2178623 | None:intergenic | 35.0% | |
| AGGATGAAATCAAAAGGCAA+GGG | - | chr2.4:2179111-2179130 | None:intergenic | 35.0% | |
| AGTAAGGTTAAAAGAGGTAG+AGG | - | chr2.4:2178498-2178517 | None:intergenic | 35.0% | |
| ATTAAGGGAGAGTTTATTGG+TGG | + | chr2.4:2180290-2180309 | MS.gene89060:CDS | 35.0% | |
| CAAAATCAATTATCCTGGAG+GGG | + | chr2.4:2177192-2177211 | MS.gene89060:intron | 35.0% | |
| CACCACATAATCAAACACAT+AGG | - | chr2.4:2176981-2177000 | None:intergenic | 35.0% | |
| CAGTAGAGAAACCATTAGAA+AGG | - | chr2.4:2178460-2178479 | None:intergenic | 35.0% | |
| CATCCTATATAAGTTTGTGC+AGG | - | chr2.4:2179222-2179241 | None:intergenic | 35.0% | |
| CCCTTCATGTAAATCATAAC+AGG | - | chr2.4:2178070-2178089 | None:intergenic | 35.0% | |
| CTTCTAACAACGACATCTAT+GGG | + | chr2.4:2178537-2178556 | MS.gene89060:intron | 35.0% | |
| CTTTCTAATGGTTTCTCTAC+TGG | + | chr2.4:2178458-2178477 | MS.gene89060:intron | 35.0% | |
| GAAAAAGGGCTAAAATTGAG+TGG | - | chr2.4:2177332-2177351 | None:intergenic | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | - | chr2.4:2178579-2178598 | None:intergenic | 35.0% | |
| GACCTCTAAATCCTTTCTAA+TGG | + | chr2.4:2178446-2178465 | MS.gene89060:intron | 35.0% | |
| GACTTGTGGATTCTGTAATA+AGG | + | chr2.4:2178799-2178818 | MS.gene89060:intron | 35.0% | |
| GAGAAGAGTAAGGTTAAAAG+AGG | - | chr2.4:2178504-2178523 | None:intergenic | 35.0% | |
| GCAAAATCAATTATCCTGGA+GGG | + | chr2.4:2177191-2177210 | MS.gene89060:intron | 35.0% | |
| GCAAGGTGAGAAATTATAAG+AGG | - | chr2.4:2176653-2176672 | None:intergenic | 35.0% | |
| GCACAAACTTATATAGGATG+CGG | + | chr2.4:2179222-2179241 | MS.gene89060:intron | 35.0% | |
| GGATCTAGAGATAAATGAGT+TGG | + | chr2.4:2178902-2178921 | MS.gene89060:intron | 35.0% | |
| GTAGAATATGAATGAGACAG+TGG | - | chr2.4:2177367-2177386 | None:intergenic | 35.0% | |
| GTCTCATTCATATTCTACCA+AGG | + | chr2.4:2177369-2177388 | MS.gene89060:intron | 35.0% | |
| TAATCACTTGAGATTGTCTG+CGG | - | chr2.4:2177609-2177628 | None:intergenic | 35.0% | |
| TATTGTTCTTAGTATGCACC+AGG | + | chr2.4:2180319-2180338 | MS.gene89060:CDS | 35.0% | |
| TCTCCCTTAATGAAAACTTG+TGG | - | chr2.4:2180281-2180300 | None:intergenic | 35.0% | |
| TCTTCTAACAACGACATCTA+TGG | + | chr2.4:2178536-2178555 | MS.gene89060:intron | 35.0% | |
| TGGAATGAGATACACAACTA+AGG | + | chr2.4:2177843-2177862 | MS.gene89060:CDS | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | - | chr2.4:2178584-2178603 | None:intergenic | 35.0% | |
| TTCATATTCTACCAAGGCAA+TGG | + | chr2.4:2177375-2177394 | MS.gene89060:intron | 35.0% | |
| TTGATATATGTACATGCGTC+TGG | + | chr2.4:2180021-2180040 | MS.gene89060:intron | 35.0% | |
| ! | ATGGGTTTATTGACTAGATG+GGG | + | chr2.4:2178675-2178694 | MS.gene89060:intron | 35.0% |
| ! | CAATGAGTTGGATCCAAATA+TGG | - | chr2.4:2178427-2178446 | None:intergenic | 35.0% |
| ! | GATGGGTTTATTGACTAGAT+GGG | + | chr2.4:2178674-2178693 | MS.gene89060:intron | 35.0% |
| ! | TGAGTGGCAATATTCACTTT+TGG | - | chr2.4:2177316-2177335 | None:intergenic | 35.0% |
| ! | TTTGAAGTCATCATGTGTGT+CGG | - | chr2.4:2177881-2177900 | None:intergenic | 35.0% |
| ! | TTTTCTGTATGTAACGGTGT+TGG | + | chr2.4:2177778-2177797 | MS.gene89060:intron | 35.0% |
| !! | TGATGGGTTTATTGACTAGA+TGG | + | chr2.4:2178673-2178692 | MS.gene89060:intron | 35.0% |
| !! | TGGTTTTTGATAGAGCACTA+TGG | - | chr2.4:2178407-2178426 | None:intergenic | 35.0% |
| !!! | AAGCTTTTTTAGGCTCTGTT+TGG | + | chr2.4:2176833-2176852 | MS.gene89060:intron | 35.0% |
| !!! | ATTAGGGTTTGTTTTAGGGT+TGG | - | chr2.4:2176541-2176560 | None:intergenic | 35.0% |
| !!! | GTTTCTCTACTGGTTTTCTT+AGG | + | chr2.4:2178468-2178487 | MS.gene89060:intron | 35.0% |
| AAGTTATCCTGGAGATCTTG+TGG | + | chr2.4:2177531-2177550 | MS.gene89060:intron | 40.0% | |
| AATCACTTGAGATTGTCTGC+GGG | - | chr2.4:2177608-2177627 | None:intergenic | 40.0% | |
| AGAGAACTAAATCCACACTG+TGG | - | chr2.4:2178106-2178125 | None:intergenic | 40.0% | |
| AGCGATTCCCTTGAAAAGAA+TGG | - | chr2.4:2176488-2176507 | None:intergenic | 40.0% | |
| ATTCTACCAAGGCAATGGTT+GGG | + | chr2.4:2177380-2177399 | MS.gene89060:intron | 40.0% | |
| CAGATGTTCCTTTAAGTGCT+AGG | + | chr2.4:2179417-2179436 | MS.gene89060:intron | 40.0% | |
| CATACATTGCCACTCAAGTT+TGG | + | chr2.4:2177285-2177304 | MS.gene89060:intron | 40.0% | |
| CGACATTAGATAGAGAGTTG+GGG | + | chr2.4:2178713-2178732 | MS.gene89060:intron | 40.0% | |
| CTTATTTCCACAAGATCTCC+AGG | - | chr2.4:2177541-2177560 | None:intergenic | 40.0% | |
| GACGACATTAGATAGAGAGT+TGG | + | chr2.4:2178711-2178730 | MS.gene89060:intron | 40.0% | |
| GAGAACTAAATCCACACTGT+GGG | - | chr2.4:2178105-2178124 | None:intergenic | 40.0% | |
| GAGGATGAAATCAAAAGGCA+AGG | - | chr2.4:2179112-2179131 | None:intergenic | 40.0% | |
| GCATGAACAAACTTACCTGT+AGG | - | chr2.4:2179483-2179502 | None:intergenic | 40.0% | |
| GGATACCCAATACCGTAAAA+TGG | - | chr2.4:2176613-2176632 | None:intergenic | 40.0% | |
| GGATTTAGAGGTCAATGAGT+TGG | - | chr2.4:2178439-2178458 | None:intergenic | 40.0% | |
| GGCAAAATCAATTATCCTGG+AGG | + | chr2.4:2177190-2177209 | MS.gene89060:intron | 40.0% | |
| TATTCTACCAAGGCAATGGT+TGG | + | chr2.4:2177379-2177398 | MS.gene89060:intron | 40.0% | |
| TATTTCACACCCTTGTAGAG+TGG | + | chr2.4:2180403-2180422 | MS.gene89060:intron | 40.0% | |
| TGACTGCAGAGAAAGAACAT+GGG | - | chr2.4:2180245-2180264 | None:intergenic | 40.0% | |
| TGGTAGAAACTAGACATAGG+TGG | + | chr2.4:2178757-2178776 | MS.gene89060:intron | 40.0% | |
| TGTTGTTGTAGCTGATGTCA+TGG | + | chr2.4:2179022-2179041 | MS.gene89060:intron | 40.0% | |
| TTAGGCTCTGTTTGGATGAA+CGG | + | chr2.4:2176841-2176860 | MS.gene89060:intron | 40.0% | |
| TTCAACTCACCACTCTACAA+GGG | - | chr2.4:2180415-2180434 | None:intergenic | 40.0% | |
| TTCATCCTCTTCAACGGAAA+AGG | + | chr2.4:2179123-2179142 | MS.gene89060:intron | 40.0% | |
| TTGAAAAGGTAGACTCAGAG+TGG | + | chr2.4:2178281-2178300 | MS.gene89060:intron | 40.0% | |
| ! | AAGTGCTAGGAACATTTTGC+AGG | + | chr2.4:2179430-2179449 | MS.gene89060:CDS | 40.0% |
| ! | AATCTGGACCAGTCTTTTCA+TGG | + | chr2.4:2178210-2178229 | MS.gene89060:intron | 40.0% |
| ! | ACAGGTAAGTTTGTTCATGC+TGG | + | chr2.4:2179483-2179502 | MS.gene89060:intron | 40.0% |
| ! | ATGGCGACCATTCTTTTCAA+GGG | + | chr2.4:2176478-2176497 | MS.gene89060:CDS | 40.0% |
| ! | GGAGCCAAAATTGATTCTAG+AGG | - | chr2.4:2177246-2177265 | None:intergenic | 40.0% |
| ! | TAAGCCTTATCCCACTAAGT+GGG | - | chr2.4:2178985-2179004 | None:intergenic | 40.0% |
| ! | TGTTTCCTTTTCCGTTGAAG+AGG | - | chr2.4:2179131-2179150 | None:intergenic | 40.0% |
| !! | CAGGCACTAAGATTGACTTT+TGG | + | chr2.4:2177663-2177682 | MS.gene89060:intron | 40.0% |
| !! | GTGGCAATATTCACTTTTGG+AGG | - | chr2.4:2177313-2177332 | None:intergenic | 40.0% |
| AAAAGGTAGACTCAGAGTGG+AGG | + | chr2.4:2178284-2178303 | MS.gene89060:intron | 45.0% | |
| AATCCACACTGTGGGAAATC+AGG | - | chr2.4:2178097-2178116 | None:intergenic | 45.0% | |
| AGTCAGATCACTAGAGGTAG+GGG | + | chr2.4:2178843-2178862 | MS.gene89060:intron | 45.0% | |
| CAGCTCTACCATGAAAAGAC+TGG | - | chr2.4:2178221-2178240 | None:intergenic | 45.0% | |
| CTTCAACTCACCACTCTACA+AGG | - | chr2.4:2180416-2180435 | None:intergenic | 45.0% | |
| GAGTCAGATCACTAGAGGTA+GGG | + | chr2.4:2178842-2178861 | MS.gene89060:intron | 45.0% | |
| GGAGAATAGATCAGATGGAG+AGG | + | chr2.4:2178820-2178839 | MS.gene89060:intron | 45.0% | |
| GTGACTGCAGAGAAAGAACA+TGG | - | chr2.4:2180246-2180265 | None:intergenic | 45.0% | |
| TCTTGCAATGGGAACTAACC+TGG | - | chr2.4:2180340-2180359 | None:intergenic | 45.0% | |
| TGTTCTTTCTCTGCAGTCAC+TGG | + | chr2.4:2180246-2180265 | MS.gene89060:intron | 45.0% | |
| TGTTTACCCAACCATTGCCT+TGG | - | chr2.4:2177389-2177408 | None:intergenic | 45.0% | |
| TTGGAGGAACCAAACTTGAG+TGG | - | chr2.4:2177297-2177316 | None:intergenic | 45.0% | |
| ! | AAAGACTGGTCCAGATTCAG+AGG | - | chr2.4:2178207-2178226 | None:intergenic | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr2.4:2178358-2178377 | MS.gene89060:intron | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr2.4:2178377-2178358 | None:intergenic | 45.0% |
| ! | AAGGGTTAGTACATAGGTGC+TGG | + | chr2.4:2179163-2179182 | MS.gene89060:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr2.4:2178357-2178376 | MS.gene89060:intron | 45.0% |
| ! | CTAAGCCTTATCCCACTAAG+TGG | - | chr2.4:2178986-2179005 | None:intergenic | 45.0% |
| ! | CTTGTAGAGTGGTGAGTTGA+AGG | + | chr2.4:2180414-2180433 | MS.gene89060:intron | 45.0% |
| ATTGGCAGCACCAGCATTTC+CGG | - | chr2.4:2180151-2180170 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr2.4:2179002-2178983 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr2.4:2178362-2178381 | MS.gene89060:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr2.4:2178381-2178362 | None:intergenic | 50.0% | |
| GAGAGGAGTCAGATCACTAG+AGG | + | chr2.4:2178837-2178856 | MS.gene89060:intron | 50.0% | |
| GCACGTAGAGAGAAGACTTG+TGG | + | chr2.4:2178785-2178804 | MS.gene89060:intron | 50.0% | |
| GGAGTCAGATCACTAGAGGT+AGG | + | chr2.4:2178841-2178860 | MS.gene89060:intron | 50.0% | |
| GGTTGGAAAGCTTACACGTG+TGG | - | chr2.4:2176524-2176543 | None:intergenic | 50.0% | |
| GTACCTGATTTCCCACAGTG+TGG | + | chr2.4:2178091-2178110 | MS.gene89060:CDS | 50.0% | |
| ! | CATAGTAGCACCGGAAATGC+TGG | + | chr2.4:2180138-2180157 | MS.gene89060:intron | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr2.4:2178356-2178375 | MS.gene89060:intron | 50.0% |
| ! | GGTATGGTTGTGTCACTGTG+TGG | + | chr2.4:2180094-2180113 | MS.gene89060:intron | 50.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr2.4:2178370-2178389 | MS.gene89060:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr2.4:2178971-2178990 | MS.gene89060:intron | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr2.4:2178990-2178971 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr2.4:2178978-2178997 | MS.gene89060:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr2.4:2178997-2178978 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr2.4:2178972-2178991 | MS.gene89060:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr2.4:2178991-2178972 | None:intergenic | 55.0% | |
| ! | GACATGTTTGGTTCCCCTCC+AGG | - | chr2.4:2177208-2177227 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 2176478 | 2180468 | 2176478 | ID=MS.gene89060 |
| chr2.4 | mRNA | 2176478 | 2180468 | 2176478 | ID=MS.gene89060.t1;Parent=MS.gene89060 |
| chr2.4 | exon | 2176478 | 2176528 | 2176478 | ID=MS.gene89060.t1.exon1;Parent=MS.gene89060.t1 |
| chr2.4 | CDS | 2176478 | 2176528 | 2176478 | ID=cds.MS.gene89060.t1;Parent=MS.gene89060.t1 |
| chr2.4 | exon | 2177823 | 2177954 | 2177823 | ID=MS.gene89060.t1.exon2;Parent=MS.gene89060.t1 |
| chr2.4 | CDS | 2177823 | 2177954 | 2177823 | ID=cds.MS.gene89060.t1;Parent=MS.gene89060.t1 |
| chr2.4 | exon | 2178052 | 2178151 | 2178052 | ID=MS.gene89060.t1.exon3;Parent=MS.gene89060.t1 |
| chr2.4 | CDS | 2178052 | 2178151 | 2178052 | ID=cds.MS.gene89060.t1;Parent=MS.gene89060.t1 |
| chr2.4 | exon | 2179420 | 2179486 | 2179420 | ID=MS.gene89060.t1.exon4;Parent=MS.gene89060.t1 |
| chr2.4 | CDS | 2179420 | 2179486 | 2179420 | ID=cds.MS.gene89060.t1;Parent=MS.gene89060.t1 |
| chr2.4 | exon | 2180262 | 2180340 | 2180262 | ID=MS.gene89060.t1.exon5;Parent=MS.gene89060.t1 |
| chr2.4 | CDS | 2180262 | 2180340 | 2180262 | ID=cds.MS.gene89060.t1;Parent=MS.gene89060.t1 |
| chr2.4 | exon | 2180421 | 2180468 | 2180421 | ID=MS.gene89060.t1.exon6;Parent=MS.gene89060.t1 |
| chr2.4 | CDS | 2180421 | 2180468 | 2180421 | ID=cds.MS.gene89060.t1;Parent=MS.gene89060.t1 |
| Gene Sequence |
| Protein sequence |
