Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89565.t1 | XP_013468444.1 | 87.7 | 454 | 41 | 4 | 1 | 444 | 1 | 449 | 2.70E-179 | 638.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89565.t1 | F4IDQ5 | 29.1 | 237 | 107 | 8 | 203 | 435 | 267 | 446 | 1.3e-12 | 75.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89565.t1 | A0A072VLJ2 | 87.7 | 454 | 41 | 4 | 1 | 444 | 1 | 449 | 2.0e-179 | 638.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049397 | MS.gene89565 | 0.809002 | 2.35E-50 | -1.69E-46 |
MS.gene049418 | MS.gene89565 | 0.842526 | 2.45E-58 | -1.69E-46 |
MS.gene049596 | MS.gene89565 | 0.813364 | 2.66E-51 | -1.69E-46 |
MS.gene049622 | MS.gene89565 | 0.818768 | 1.65E-52 | -1.69E-46 |
MS.gene049660 | MS.gene89565 | 0.810251 | 1.27E-50 | -1.69E-46 |
MS.gene04985 | MS.gene89565 | 0.834108 | 3.63E-56 | -1.69E-46 |
MS.gene049989 | MS.gene89565 | 0.906241 | 1.83E-80 | -1.69E-46 |
MS.gene050297 | MS.gene89565 | 0.901894 | 1.69E-78 | -1.69E-46 |
MS.gene050310 | MS.gene89565 | 0.834958 | 2.22E-56 | -1.69E-46 |
MS.gene05054 | MS.gene89565 | 0.808788 | 2.61E-50 | -1.69E-46 |
MS.gene050648 | MS.gene89565 | 0.846437 | 2.17E-59 | -1.69E-46 |
MS.gene051067 | MS.gene89565 | 0.826149 | 3.18E-54 | -1.69E-46 |
MS.gene051094 | MS.gene89565 | 0.822291 | 2.56E-53 | -1.69E-46 |
MS.gene05124 | MS.gene89565 | 0.800089 | 1.70E-48 | -1.69E-46 |
MS.gene051263 | MS.gene89565 | 0.863442 | 2.48E-64 | -1.69E-46 |
MS.gene051478 | MS.gene89565 | 0.852804 | 3.63E-61 | -1.69E-46 |
MS.gene051629 | MS.gene89565 | 0.855827 | 4.86E-62 | -1.69E-46 |
MS.gene051648 | MS.gene89565 | 0.817012 | 4.11E-52 | -1.69E-46 |
MS.gene051698 | MS.gene89565 | 0.801256 | 9.81E-49 | -1.69E-46 |
MS.gene051742 | MS.gene89565 | 0.810157 | 1.33E-50 | -1.69E-46 |
MS.gene051955 | MS.gene89565 | 0.815639 | 8.34E-52 | -1.69E-46 |
MS.gene052143 | MS.gene89565 | 0.847114 | 1.42E-59 | -1.69E-46 |
MS.gene052367 | MS.gene89565 | 0.862716 | 4.16E-64 | -1.69E-46 |
MS.gene053173 | MS.gene89565 | 0.805311 | 1.42E-49 | -1.69E-46 |
MS.gene053348 | MS.gene89565 | 0.804746 | 1.86E-49 | -1.69E-46 |
MS.gene053416 | MS.gene89565 | 0.860785 | 1.62E-63 | -1.69E-46 |
MS.gene053417 | MS.gene89565 | 0.861057 | 1.34E-63 | -1.69E-46 |
MS.gene053536 | MS.gene89565 | 0.823218 | 1.56E-53 | -1.69E-46 |
MS.gene053538 | MS.gene89565 | 0.824131 | 9.53E-54 | -1.69E-46 |
MS.gene05369 | MS.gene89565 | 0.817969 | 2.50E-52 | -1.69E-46 |
MS.gene053929 | MS.gene89565 | 0.810666 | 1.03E-50 | -1.69E-46 |
MS.gene054551 | MS.gene89565 | 0.817265 | 3.61E-52 | -1.69E-46 |
MS.gene054643 | MS.gene89565 | 0.862751 | 4.06E-64 | -1.69E-46 |
MS.gene054999 | MS.gene89565 | 0.801776 | 7.68E-49 | -1.69E-46 |
MS.gene055411 | MS.gene89565 | 0.817054 | 4.02E-52 | -1.69E-46 |
MS.gene055764 | MS.gene89565 | 0.822603 | 2.17E-53 | -1.69E-46 |
MS.gene055957 | MS.gene89565 | 0.861299 | 1.13E-63 | -1.69E-46 |
MS.gene056041 | MS.gene89565 | 0.860937 | 1.46E-63 | -1.69E-46 |
MS.gene056042 | MS.gene89565 | 0.860649 | 1.78E-63 | -1.69E-46 |
MS.gene056169 | MS.gene89565 | 0.807725 | 4.39E-50 | -1.69E-46 |
MS.gene056228 | MS.gene89565 | 0.818095 | 2.34E-52 | -1.69E-46 |
MS.gene056335 | MS.gene89565 | 0.818064 | 2.38E-52 | -1.69E-46 |
MS.gene056526 | MS.gene89565 | 0.823474 | 1.36E-53 | -1.69E-46 |
MS.gene057004 | MS.gene89565 | 0.817752 | 2.80E-52 | -1.69E-46 |
MS.gene057483 | MS.gene89565 | 0.824532 | 7.67E-54 | -1.69E-46 |
MS.gene058196 | MS.gene89565 | 0.857584 | 1.48E-62 | -1.69E-46 |
MS.gene058197 | MS.gene89565 | 0.884462 | 1.88E-71 | -1.69E-46 |
MS.gene058198 | MS.gene89565 | 0.885582 | 7.18E-72 | -1.69E-46 |
MS.gene058818 | MS.gene89565 | 0.841543 | 4.46E-58 | -1.69E-46 |
MS.gene058844 | MS.gene89565 | 0.808309 | 3.30E-50 | -1.69E-46 |
MS.gene059300 | MS.gene89565 | 0.905786 | 2.97E-80 | -1.69E-46 |
MS.gene059424 | MS.gene89565 | 0.818513 | 1.88E-52 | -1.69E-46 |
MS.gene060473 | MS.gene89565 | 0.856283 | 3.57E-62 | -1.69E-46 |
MS.gene060565 | MS.gene89565 | 0.860748 | 1.66E-63 | -1.69E-46 |
MS.gene06057 | MS.gene89565 | 0.904685 | 9.48E-80 | -1.69E-46 |
MS.gene061099 | MS.gene89565 | 0.831483 | 1.63E-55 | -1.69E-46 |
MS.gene061260 | MS.gene89565 | 0.855082 | 8.01E-62 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89565.t1 | MTR_1g069610 | 89.207 | 454 | 34 | 4 | 1 | 444 | 1 | 449 | 0.0 | 725 |
MS.gene89565.t1 | MTR_3g450760 | 56.061 | 66 | 25 | 1 | 370 | 431 | 333 | 398 | 1.17e-15 | 79.0 |
MS.gene89565.t1 | MTR_1g073670 | 28.076 | 317 | 185 | 8 | 1 | 305 | 1 | 286 | 2.65e-12 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89565.t1 | AT1G04030 | 41.737 | 472 | 190 | 21 | 1 | 429 | 1 | 430 | 6.90e-73 | 236 |
MS.gene89565.t1 | AT1G04030 | 41.737 | 472 | 190 | 21 | 1 | 429 | 1 | 430 | 6.90e-73 | 236 |
MS.gene89565.t1 | AT5G44040 | 38.621 | 435 | 190 | 17 | 1 | 388 | 1 | 405 | 1.08e-60 | 203 |
MS.gene89565.t1 | AT2G33400 | 29.167 | 312 | 150 | 11 | 1 | 305 | 1 | 248 | 6.14e-15 | 75.1 |
MS.gene89565.t1 | AT1G06660 | 29.388 | 245 | 109 | 9 | 202 | 442 | 266 | 450 | 1.83e-14 | 75.9 |
MS.gene89565.t1 | AT2G30820 | 53.425 | 73 | 28 | 3 | 372 | 441 | 326 | 395 | 1.90e-14 | 75.5 |
MS.gene89565.t1 | AT2G30820 | 53.425 | 73 | 28 | 3 | 372 | 441 | 326 | 395 | 1.90e-14 | 75.5 |
Find 122 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTTCACCTTCATCCTTTAA+AGG | 0.187029 | 1.1:-51372772 | MS.gene89565:CDS |
ATTTCCTGGTTCAACTTCTT+TGG | 0.209021 | 1.1:+51373090 | None:intergenic |
CCAGATGAGATGCCGATTAT+AGG | 0.229389 | 1.1:-51372832 | MS.gene89565:CDS |
CTGTACTTGCTAGTTGTGTT+TGG | 0.276793 | 1.1:+51372745 | None:intergenic |
TGAAGGAGTATGTAGGGTTT+TGG | 0.283066 | 1.1:+51373934 | None:intergenic |
GAAAGGGATGTAAACTCTAT+TGG | 0.307848 | 1.1:-51373306 | MS.gene89565:CDS |
TAGAGAAGAAGATGATGAAT+TGG | 0.315196 | 1.1:-51373439 | MS.gene89565:CDS |
AAAGGGATGTAAACTCTATT+GGG | 0.318157 | 1.1:-51373305 | MS.gene89565:CDS |
GCTGAATCCGGTTGAAAATA+TGG | 0.327930 | 1.1:-51373238 | MS.gene89565:CDS |
ATTTCGTGTCAAGGAAATTT+CGG | 0.330928 | 1.1:-51373124 | MS.gene89565:CDS |
TGGAATTCTAATGAGGGTTC+TGG | 0.341982 | 1.1:-51372793 | MS.gene89565:CDS |
TGTGTTTGGAATTCCTTTAA+AGG | 0.345947 | 1.1:+51372759 | None:intergenic |
CCTATAATCGGCATCTCATC+TGG | 0.351409 | 1.1:+51372832 | None:intergenic |
TAGGAACAGTTGGGTCCTAT+TGG | 0.353133 | 1.1:-51372813 | MS.gene89565:CDS |
TAGCATCAACTGGGATTTCC+TGG | 0.358117 | 1.1:+51373076 | None:intergenic |
TTCGATAGGCTAGCATCAAC+TGG | 0.358795 | 1.1:+51373066 | None:intergenic |
CACAAGAAGACGACTTTGAA+TGG | 0.373294 | 1.1:+51373616 | None:intergenic |
ATACAATGTCCCTTTGGTTC+AGG | 0.374830 | 1.1:-51373963 | MS.gene89565:CDS |
AAGAAGAAGTACTTGATGAT+TGG | 0.376669 | 1.1:-51373506 | MS.gene89565:CDS |
TCGAATTGGTTGGGTTCATC+CGG | 0.379742 | 1.1:-51373048 | MS.gene89565:CDS |
TGTTGTGAGATGCTCCTATC+AGG | 0.381760 | 1.1:+51372970 | None:intergenic |
CTAAAATAGGCCTATCTTCA+AGG | 0.385904 | 1.1:+51372926 | None:intergenic |
TTCTCTAGCCTTGTCTCAAA+TGG | 0.386868 | 1.1:+51372603 | None:intergenic |
TCTGTGACTTCGAATTCAAC+TGG | 0.389893 | 1.1:-51373582 | MS.gene89565:CDS |
TACAAACAAGCCTTGTTAAC+AGG | 0.398342 | 1.1:+51373015 | None:intergenic |
ATCATAGGTATCAGAATTGT+AGG | 0.406684 | 1.1:-51373545 | MS.gene89565:CDS |
CTCTTACAAGGAGACTTCCT+TGG | 0.412158 | 1.1:+51372856 | None:intergenic |
TTCAGGCAAAACAGACTCAT+AGG | 0.416926 | 1.1:+51373674 | None:intergenic |
CAATTCTGATACCTATGATT+AGG | 0.419539 | 1.1:+51373549 | None:intergenic |
CAGTGATAAGCCTTGAAGAT+AGG | 0.427800 | 1.1:-51372936 | MS.gene89565:CDS |
GACCCAACTGTTCCTATAAT+CGG | 0.428480 | 1.1:+51372820 | None:intergenic |
GAAGACGACTTTGAATGGTT+TGG | 0.430474 | 1.1:+51373621 | None:intergenic |
AGAAGAAGTACTTGATGATT+GGG | 0.432512 | 1.1:-51373505 | MS.gene89565:CDS |
GGTCTTACCCTCCTAATCAT+AGG | 0.436853 | 1.1:-51373560 | MS.gene89565:CDS |
TCTTACAAGGAGACTTCCTT+GGG | 0.437790 | 1.1:+51372857 | None:intergenic |
GGAATTCCTTTAAAGGATGA+AGG | 0.441727 | 1.1:+51372766 | None:intergenic |
ACCGTTAAAGCACCTAAAAT+AGG | 0.447229 | 1.1:+51372913 | None:intergenic |
ATTCTAGTGAAGGAGTATGT+AGG | 0.448451 | 1.1:+51373927 | None:intergenic |
TAGTGATGATGATGAGGAGG+AGG | 0.450003 | 1.1:-51373472 | MS.gene89565:CDS |
TGCAGGATAAGAAGGTGAAT+TGG | 0.452750 | 1.1:-51372635 | MS.gene89565:intron |
GGCTCAGTGGAAAGTTGTTA+AGG | 0.459239 | 1.1:-51373217 | MS.gene89565:CDS |
GTGTAGGGATAAAACTGAAC+AGG | 0.461110 | 1.1:-51373781 | MS.gene89565:intron |
AACAAGGCTTGTTTGTATGC+TGG | 0.461233 | 1.1:-51373009 | MS.gene89565:CDS |
AGAGAAGAAGATGATGAATT+GGG | 0.461880 | 1.1:-51373438 | MS.gene89565:CDS |
AACACTTCTGTCTCTAGCAT+TGG | 0.471678 | 1.1:+51373275 | None:intergenic |
TGCTAGCCTATCGAATTGGT+TGG | 0.473010 | 1.1:-51373058 | MS.gene89565:CDS |
TTGATGCTAGCCTATCGAAT+TGG | 0.473087 | 1.1:-51373062 | MS.gene89565:CDS |
TGTTCATTCTGTGCTGAATC+CGG | 0.473897 | 1.1:-51373250 | MS.gene89565:CDS |
GGAAAAGAGGAGGCTTTGGC+TGG | 0.475470 | 1.1:-51373645 | MS.gene89565:CDS |
TTTACATCCCTTTCACATGT+AGG | 0.478384 | 1.1:+51373315 | None:intergenic |
AATAGAGATGCTGCAGAAGC+TGG | 0.478976 | 1.1:-51372573 | MS.gene89565:CDS |
ACAGCAATACAATGTCCCTT+TGG | 0.481214 | 1.1:-51373969 | MS.gene89565:CDS |
GTCCTATTGGAATTCTAATG+AGG | 0.486281 | 1.1:-51372800 | MS.gene89565:CDS |
AGGTGGAAAAGAGGAGGCTT+TGG | 0.488583 | 1.1:-51373649 | MS.gene89565:CDS |
GCTAGCCTATCGAATTGGTT+GGG | 0.489992 | 1.1:-51373057 | MS.gene89565:CDS |
GTGGCATCGGTACTCCTGAT+AGG | 0.491698 | 1.1:-51372984 | MS.gene89565:CDS |
ATGCCGATTATAGGAACAGT+TGG | 0.502557 | 1.1:-51372823 | MS.gene89565:CDS |
AGAGGTTTCATTTCGTGTCA+AGG | 0.504181 | 1.1:-51373133 | MS.gene89565:CDS |
GTCAAGGAAATTTCGGAGGC+CGG | 0.506460 | 1.1:-51373117 | MS.gene89565:CDS |
TCCTATGCCTACATGTGAAA+GGG | 0.507929 | 1.1:-51373322 | MS.gene89565:CDS |
GTTCAACTTCTTTGGTGTGC+CGG | 0.508061 | 1.1:+51373098 | None:intergenic |
TTCTGATACCTATGATTAGG+AGG | 0.509018 | 1.1:+51373552 | None:intergenic |
GCCTGAAGAAGGTGGAAAAG+AGG | 0.511476 | 1.1:-51373658 | MS.gene89565:CDS |
CTAAAAGAACACCACGATCA+AGG | 0.516379 | 1.1:-51373194 | MS.gene89565:CDS |
ACTGGCTGTGCAGGATAAGA+AGG | 0.516689 | 1.1:-51372643 | MS.gene89565:intron |
GATAAAACTGAACAGGAACT+TGG | 0.520043 | 1.1:-51373774 | MS.gene89565:CDS |
TGATGATGATGAGGAGGAGG+AGG | 0.523004 | 1.1:-51373469 | MS.gene89565:CDS |
TTGTATGCTGGTGGTGGCAT+CGG | 0.525729 | 1.1:-51372997 | MS.gene89565:CDS |
GAAATGAAACCTCTGTATCA+TGG | 0.527422 | 1.1:+51373142 | None:intergenic |
TTCTAGTGAAGGAGTATGTA+GGG | 0.527537 | 1.1:+51373928 | None:intergenic |
CGAATTGGTTGGGTTCATCC+GGG | 0.529197 | 1.1:-51373047 | MS.gene89565:CDS |
GAGTTTGAAGAAGACGGAAT+GGG | 0.529728 | 1.1:-51373411 | MS.gene89565:CDS |
TCATGTGTTTACTGAGGAAG+TGG | 0.530102 | 1.1:-51373349 | MS.gene89565:CDS |
TTGCTGTAGGGATAAAATTG+AGG | 0.530685 | 1.1:-51373751 | MS.gene89565:CDS |
ATCTCATCTGGACTCTTACA+AGG | 0.536876 | 1.1:+51372844 | None:intergenic |
GTTAACAGGTGTAGTTGTCC+CGG | 0.536876 | 1.1:+51373029 | None:intergenic |
GATGATGAGGAGGAGGAGGA+TGG | 0.539564 | 1.1:-51373465 | MS.gene89565:CDS |
AGAAGATGATGAATTGGGTG+TGG | 0.539828 | 1.1:-51373433 | MS.gene89565:CDS |
GGAGTTTGAAGAAGACGGAA+TGG | 0.539838 | 1.1:-51373412 | MS.gene89565:CDS |
ACCCTCATTAGAATTCCAAT+AGG | 0.541146 | 1.1:+51372798 | None:intergenic |
CTAACAAAATTCTCTTTCTG+AGG | 0.541406 | 1.1:+51373171 | None:intergenic |
GTCCTATGCCTACATGTGAA+AGG | 0.549863 | 1.1:-51373323 | MS.gene89565:CDS |
ATAATTGCTTACTGTGATTG+TGG | 0.550999 | 1.1:+51373902 | None:intergenic |
GACAACTACACCTGTTAACA+AGG | 0.558489 | 1.1:-51373025 | MS.gene89565:CDS |
GCTTGTTTGTATGCTGGTGG+TGG | 0.559146 | 1.1:-51373003 | MS.gene89565:CDS |
TTGGAGTGATCCTGAACCAA+AGG | 0.559802 | 1.1:+51373953 | None:intergenic |
CTGTGACTTCGAATTCAACT+GGG | 0.563033 | 1.1:-51373581 | MS.gene89565:CDS |
GGTGTGGAGTTTGAAGAAGA+CGG | 0.565341 | 1.1:-51373417 | MS.gene89565:CDS |
TTACTTGAAGCACGTTGTTG+CGG | 0.569342 | 1.1:+51374199 | None:intergenic |
CACACCAAAGAAGTTGAACC+AGG | 0.569677 | 1.1:-51373094 | MS.gene89565:CDS |
TCCTATTGGAATTCTAATGA+GGG | 0.572382 | 1.1:-51372799 | MS.gene89565:CDS |
TGGAGTGATCCTGAACCAAA+GGG | 0.574081 | 1.1:+51373954 | None:intergenic |
TGCCGATTATAGGAACAGTT+GGG | 0.574954 | 1.1:-51372822 | MS.gene89565:CDS |
ACAGGAACTTGGTTGCTGTA+GGG | 0.576162 | 1.1:-51373763 | MS.gene89565:CDS |
TCTTTCTGAGGCCTTGATCG+TGG | 0.579965 | 1.1:+51373183 | None:intergenic |
TCATAGGTATCAGAATTGTA+GGG | 0.580930 | 1.1:-51373544 | MS.gene89565:CDS |
TGAAACCTCTGTATCATGGT+TGG | 0.594134 | 1.1:+51373146 | None:intergenic |
CTTCCTTGGGGACGATGTAG+CGG | 0.603133 | 1.1:+51372870 | None:intergenic |
ATGAACCCAACCAATTCGAT+AGG | 0.604616 | 1.1:+51373052 | None:intergenic |
TTTCCGCTACATCGTCCCCA+AGG | 0.613077 | 1.1:-51372873 | MS.gene89565:CDS |
GGGATACTCGAAGTCGAGGA+AGG | 0.614773 | 1.1:-51373391 | MS.gene89565:CDS |
AACAGGAACTTGGTTGCTGT+AGG | 0.616293 | 1.1:-51373764 | MS.gene89565:CDS |
AAAGGGACATTGTATTGCTG+TGG | 0.618091 | 1.1:+51373971 | None:intergenic |
TCGTGTCAAGGAAATTTCGG+AGG | 0.626776 | 1.1:-51373121 | MS.gene89565:CDS |
GAATGGGATACTCGAAGTCG+AGG | 0.634105 | 1.1:-51373395 | MS.gene89565:CDS |
AAGGCTTGTTTGTATGCTGG+TGG | 0.635824 | 1.1:-51373006 | MS.gene89565:CDS |
CTGTAGGGATAAAATTGAGG+AGG | 0.639832 | 1.1:-51373748 | MS.gene89565:CDS |
TCTGATACCTATGATTAGGA+GGG | 0.641103 | 1.1:+51373553 | None:intergenic |
TCTTAGTGATGATGATGAGG+AGG | 0.641753 | 1.1:-51373475 | MS.gene89565:CDS |
TCCCTTTCACATGTAGGCAT+AGG | 0.644867 | 1.1:+51373321 | None:intergenic |
GATTGTGGTGATTCTAGTGA+AGG | 0.644878 | 1.1:+51373917 | None:intergenic |
AAGGGATGTAAACTCTATTG+GGG | 0.647688 | 1.1:-51373304 | MS.gene89565:CDS |
ATGCTACGCCATTTGAGACA+AGG | 0.659616 | 1.1:-51372611 | MS.gene89565:CDS |
TGATCTTAGTGATGATGATG+AGG | 0.661250 | 1.1:-51373478 | MS.gene89565:CDS |
TCGATAGGCTAGCATCAACT+GGG | 0.664173 | 1.1:+51373067 | None:intergenic |
TGAAGAAGGTGGAAAAGAGG+AGG | 0.666349 | 1.1:-51373655 | MS.gene89565:CDS |
GATAGGAGCATCTCACAACA+AGG | 0.666708 | 1.1:-51372967 | MS.gene89565:CDS |
TAGTACCAACCATGATACAG+AGG | 0.668642 | 1.1:-51373151 | MS.gene89565:CDS |
CGGTTGAAAATATGGCTCAG+TGG | 0.681764 | 1.1:-51373230 | MS.gene89565:CDS |
CACAACTAGCAAGTACAGAG+AGG | 0.701957 | 1.1:-51372740 | MS.gene89565:intron |
TATTGATCATGTGTTTACTG+AGG | 0.741740 | 1.1:-51373355 | MS.gene89565:CDS |
CTTACAAGGAGACTTCCTTG+GGG | 0.775099 | 1.1:+51372858 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAGAAAATAGAAAGTAAAAA+GGG | + | chr1.1:51372636-51372655 | None:intergenic | 15.0% |
!! | GTAAAAGAAATTAAGATAAA+GGG | + | chr1.1:51372780-51372799 | None:intergenic | 15.0% |
!! | TGTAAAAGAAATTAAGATAA+AGG | + | chr1.1:51372781-51372800 | None:intergenic | 15.0% |
!!! | AAAATAGAGCTAAATTTTTT+AGG | - | chr1.1:51372741-51372760 | MS.gene89565:CDS | 15.0% |
!! | AGAAAATAGAAAGTAAAAAG+GGG | + | chr1.1:51372635-51372654 | None:intergenic | 20.0% |
!! | CAAGAAAATAGAAAGTAAAA+AGG | + | chr1.1:51372637-51372656 | None:intergenic | 20.0% |
!!! | AGCTAAATTTTTTAGGTTTT+AGG | - | chr1.1:51372748-51372767 | MS.gene89565:CDS | 20.0% |
!!! | TTCTTATTTGGATATTTAAC+TGG | - | chr1.1:51374133-51374152 | MS.gene89565:intron | 20.0% |
! | AAAATAGAAAGTAAAAAGGG+GGG | + | chr1.1:51372633-51372652 | None:intergenic | 25.0% |
! | ATTGGAAGTAAACAAAGAAA+AGG | + | chr1.1:51372707-51372726 | None:intergenic | 25.0% |
! | GAAAATAGAAAGTAAAAAGG+GGG | + | chr1.1:51372634-51372653 | None:intergenic | 25.0% |
! | TTGGAAGTAAACAAAGAAAA+GGG | + | chr1.1:51372706-51372725 | None:intergenic | 25.0% |
!!! | ATTTTCACTCATTAGTTTGA+TGG | - | chr1.1:51374106-51374125 | MS.gene89565:intron | 25.0% |
!!! | TGTTTTTTTGTTGTTGTGTA+GGG | - | chr1.1:51372998-51373017 | MS.gene89565:CDS | 25.0% |
!!! | TTGTTTTTTTGTTGTTGTGT+AGG | - | chr1.1:51372997-51373016 | MS.gene89565:CDS | 25.0% |
!!! | TTTGATGGTGAATTCTTATT+TGG | - | chr1.1:51374121-51374140 | MS.gene89565:intron | 25.0% |
AAAGGGATGTAAACTCTATT+GGG | - | chr1.1:51373489-51373508 | MS.gene89565:CDS | 30.0% | |
AAATAGAAAGTAAAAAGGGG+GGG | + | chr1.1:51372632-51372651 | None:intergenic | 30.0% | |
AAGCATCCAAAAATAGAAAG+TGG | + | chr1.1:51372935-51372954 | None:intergenic | 30.0% | |
AGAGAAGAAGATGATGAATT+GGG | - | chr1.1:51373356-51373375 | MS.gene89565:CDS | 30.0% | |
ATAATTGCTTACTGTGATTG+TGG | + | chr1.1:51372895-51372914 | None:intergenic | 30.0% | |
ATCATAGGTATCAGAATTGT+AGG | - | chr1.1:51373249-51373268 | MS.gene89565:CDS | 30.0% | |
ATTTCGTGTCAAGGAAATTT+CGG | - | chr1.1:51373670-51373689 | MS.gene89565:CDS | 30.0% | |
CAATTCTGATACCTATGATT+AGG | + | chr1.1:51373248-51373267 | None:intergenic | 30.0% | |
CTAACAAAATTCTCTTTCTG+AGG | + | chr1.1:51373626-51373645 | None:intergenic | 30.0% | |
TAGAGAAGAAGATGATGAAT+TGG | - | chr1.1:51373355-51373374 | MS.gene89565:CDS | 30.0% | |
TATTGATCATGTGTTTACTG+AGG | - | chr1.1:51373439-51373458 | MS.gene89565:CDS | 30.0% | |
TCATAGGTATCAGAATTGTA+GGG | - | chr1.1:51373250-51373269 | MS.gene89565:CDS | 30.0% | |
TCCTATTGGAATTCTAATGA+GGG | - | chr1.1:51373995-51374014 | MS.gene89565:CDS | 30.0% | |
! | AAGACGAAGTGAATTTTTGT+AGG | - | chr1.1:51374079-51374098 | MS.gene89565:intron | 30.0% |
! | TGTGTTTGGAATTCCTTTAA+AGG | + | chr1.1:51374038-51374057 | None:intergenic | 30.0% |
!! | AAGAAGAAGTACTTGATGAT+TGG | - | chr1.1:51373288-51373307 | MS.gene89565:CDS | 30.0% |
!! | AGAAGAAGTACTTGATGATT+GGG | - | chr1.1:51373289-51373308 | MS.gene89565:CDS | 30.0% |
AAGGGATGTAAACTCTATTG+GGG | - | chr1.1:51373490-51373509 | MS.gene89565:CDS | 35.0% | |
ACCCTCATTAGAATTCCAAT+AGG | + | chr1.1:51373999-51374018 | None:intergenic | 35.0% | |
ATTTCCTGGTTCAACTTCTT+TGG | + | chr1.1:51373707-51373726 | None:intergenic | 35.0% | |
CTAAAATAGGCCTATCTTCA+AGG | + | chr1.1:51373871-51373890 | None:intergenic | 35.0% | |
GAAAGGGATGTAAACTCTAT+TGG | - | chr1.1:51373488-51373507 | MS.gene89565:CDS | 35.0% | |
GAAATGAAACCTCTGTATCA+TGG | + | chr1.1:51373655-51373674 | None:intergenic | 35.0% | |
GATAAAACTGAACAGGAACT+TGG | - | chr1.1:51373020-51373039 | MS.gene89565:CDS | 35.0% | |
GTCCTATTGGAATTCTAATG+AGG | - | chr1.1:51373994-51374013 | MS.gene89565:CDS | 35.0% | |
TCTGATACCTATGATTAGGA+GGG | + | chr1.1:51373244-51373263 | None:intergenic | 35.0% | |
TTCTGATACCTATGATTAGG+AGG | + | chr1.1:51373245-51373264 | None:intergenic | 35.0% | |
TTGCTGTAGGGATAAAATTG+AGG | - | chr1.1:51373043-51373062 | MS.gene89565:CDS | 35.0% | |
TTTACATCCCTTTCACATGT+AGG | + | chr1.1:51373482-51373501 | None:intergenic | 35.0% | |
! | ACCGTTAAAGCACCTAAAAT+AGG | + | chr1.1:51373884-51373903 | None:intergenic | 35.0% |
! | AGACTCATAGGTTTTCACAT+TGG | + | chr1.1:51373111-51373130 | None:intergenic | 35.0% |
! | ATTCTAGTGAAGGAGTATGT+AGG | + | chr1.1:51372870-51372889 | None:intergenic | 35.0% |
! | CACTCACCACTTTCTATTTT+TGG | - | chr1.1:51372926-51372945 | MS.gene89565:CDS | 35.0% |
! | CTTGAAGATAGGCCTATTTT+AGG | - | chr1.1:51373869-51373888 | MS.gene89565:intron | 35.0% |
! | GGAATTCCTTTAAAGGATGA+AGG | + | chr1.1:51374031-51374050 | None:intergenic | 35.0% |
! | TGATCTTAGTGATGATGATG+AGG | - | chr1.1:51373316-51373335 | MS.gene89565:CDS | 35.0% |
! | TTCTAGTGAAGGAGTATGTA+GGG | + | chr1.1:51372869-51372888 | None:intergenic | 35.0% |
!! | GCCTATTTTAGGTGCTTTAA+CGG | - | chr1.1:51373880-51373899 | MS.gene89565:intron | 35.0% |
!! | TACAAACAAGCCTTGTTAAC+AGG | + | chr1.1:51373782-51373801 | None:intergenic | 35.0% |
!! | TATTTTAGGTGCTTTAACGG+TGG | - | chr1.1:51373883-51373902 | MS.gene89565:intron | 35.0% |
!!! | TTGTTGCGGTTGTGTTTTTT+GGG | + | chr1.1:51372584-51372603 | None:intergenic | 35.0% |
AAAGGGACATTGTATTGCTG+TGG | + | chr1.1:51372826-51372845 | None:intergenic | 40.0% | |
AACACTTCTGTCTCTAGCAT+TGG | + | chr1.1:51373522-51373541 | None:intergenic | 40.0% | |
ACAGCAATACAATGTCCCTT+TGG | - | chr1.1:51372825-51372844 | MS.gene89565:CDS | 40.0% | |
AGAAGATGATGAATTGGGTG+TGG | - | chr1.1:51373361-51373380 | MS.gene89565:CDS | 40.0% | |
AGAGGTTTCATTTCGTGTCA+AGG | - | chr1.1:51373661-51373680 | MS.gene89565:CDS | 40.0% | |
ATCTCATCTGGACTCTTACA+AGG | + | chr1.1:51373953-51373972 | None:intergenic | 40.0% | |
ATGAACCCAACCAATTCGAT+AGG | + | chr1.1:51373745-51373764 | None:intergenic | 40.0% | |
CACAAGAAGACGACTTTGAA+TGG | + | chr1.1:51373181-51373200 | None:intergenic | 40.0% | |
CAGTGATAAGCCTTGAAGAT+AGG | - | chr1.1:51373858-51373877 | MS.gene89565:intron | 40.0% | |
CTAAAAGAACACCACGATCA+AGG | - | chr1.1:51373600-51373619 | MS.gene89565:CDS | 40.0% | |
CTGTAGGGATAAAATTGAGG+AGG | - | chr1.1:51373046-51373065 | MS.gene89565:CDS | 40.0% | |
CTGTGACTTCGAATTCAACT+GGG | - | chr1.1:51373213-51373232 | MS.gene89565:CDS | 40.0% | |
GAAGACGACTTTGAATGGTT+TGG | + | chr1.1:51373176-51373195 | None:intergenic | 40.0% | |
GACAACTACACCTGTTAACA+AGG | - | chr1.1:51373769-51373788 | MS.gene89565:CDS | 40.0% | |
GACCCAACTGTTCCTATAAT+CGG | + | chr1.1:51373977-51373996 | None:intergenic | 40.0% | |
GAGTTTGAAGAAGACGGAAT+GGG | - | chr1.1:51373383-51373402 | MS.gene89565:CDS | 40.0% | |
GATTGTGGTGATTCTAGTGA+AGG | + | chr1.1:51372880-51372899 | None:intergenic | 40.0% | |
GCTGAATCCGGTTGAAAATA+TGG | - | chr1.1:51373556-51373575 | MS.gene89565:CDS | 40.0% | |
GGTTCACCTTCATCCTTTAA+AGG | - | chr1.1:51374022-51374041 | MS.gene89565:intron | 40.0% | |
GTGTAGGGATAAAACTGAAC+AGG | - | chr1.1:51373013-51373032 | MS.gene89565:CDS | 40.0% | |
TAGTACCAACCATGATACAG+AGG | - | chr1.1:51373643-51373662 | MS.gene89565:CDS | 40.0% | |
TCATGTGTTTACTGAGGAAG+TGG | - | chr1.1:51373445-51373464 | MS.gene89565:CDS | 40.0% | |
TCCTATGCCTACATGTGAAA+GGG | - | chr1.1:51373472-51373491 | MS.gene89565:CDS | 40.0% | |
TCTGTGACTTCGAATTCAAC+TGG | - | chr1.1:51373212-51373231 | MS.gene89565:CDS | 40.0% | |
TCTTACAAGGAGACTTCCTT+GGG | + | chr1.1:51373940-51373959 | None:intergenic | 40.0% | |
TGAAACCTCTGTATCATGGT+TGG | + | chr1.1:51373651-51373670 | None:intergenic | 40.0% | |
TGCAGGATAAGAAGGTGAAT+TGG | - | chr1.1:51374159-51374178 | MS.gene89565:intron | 40.0% | |
TGGAATTCTAATGAGGGTTC+TGG | - | chr1.1:51374001-51374020 | MS.gene89565:intron | 40.0% | |
TGTTCATTCTGTGCTGAATC+CGG | - | chr1.1:51373544-51373563 | MS.gene89565:CDS | 40.0% | |
TTACTTGAAGCACGTTGTTG+CGG | + | chr1.1:51372598-51372617 | None:intergenic | 40.0% | |
TTCAGGCAAAACAGACTCAT+AGG | + | chr1.1:51373123-51373142 | None:intergenic | 40.0% | |
! | AACAAGGCTTGTTTGTATGC+TGG | - | chr1.1:51373785-51373804 | MS.gene89565:intron | 40.0% |
! | ATACAATGTCCCTTTGGTTC+AGG | - | chr1.1:51372831-51372850 | MS.gene89565:CDS | 40.0% |
! | ATGCCGATTATAGGAACAGT+TGG | - | chr1.1:51373971-51373990 | MS.gene89565:CDS | 40.0% |
! | CACTGAGCCATATTTTCAAC+CGG | + | chr1.1:51373566-51373585 | None:intergenic | 40.0% |
! | CTGTACTTGCTAGTTGTGTT+TGG | + | chr1.1:51374052-51374071 | None:intergenic | 40.0% |
! | TCTTAGTGATGATGATGAGG+AGG | - | chr1.1:51373319-51373338 | MS.gene89565:CDS | 40.0% |
! | TGCCGATTATAGGAACAGTT+GGG | - | chr1.1:51373972-51373991 | MS.gene89565:CDS | 40.0% |
! | TTGATGCTAGCCTATCGAAT+TGG | - | chr1.1:51373732-51373751 | MS.gene89565:CDS | 40.0% |
!! | GGTTGTTTTCTTGGTTGCTT+TGG | - | chr1.1:51372548-51372567 | MS.gene89565:CDS | 40.0% |
!! | TGAAGGAGTATGTAGGGTTT+TGG | + | chr1.1:51372863-51372882 | None:intergenic | 40.0% |
!! | TTCTCTAGCCTTGTCTCAAA+TGG | + | chr1.1:51374194-51374213 | None:intergenic | 40.0% |
!! | TTTTGCTGCTGAGAAAGCAT+TGG | + | chr1.1:51372725-51372744 | None:intergenic | 40.0% |
!!! | GTTGTGTTTTTTGGGTTTGG+AGG | + | chr1.1:51372576-51372595 | None:intergenic | 40.0% |
!!! | GTTGTTGCGGTTGTGTTTTT+TGG | + | chr1.1:51372585-51372604 | None:intergenic | 40.0% |
AACAGGAACTTGGTTGCTGT+AGG | - | chr1.1:51373030-51373049 | MS.gene89565:CDS | 45.0% | |
AATAGAGATGCTGCAGAAGC+TGG | - | chr1.1:51374221-51374240 | MS.gene89565:CDS | 45.0% | |
ACAGGAACTTGGTTGCTGTA+GGG | - | chr1.1:51373031-51373050 | MS.gene89565:CDS | 45.0% | |
CACAACTAGCAAGTACAGAG+AGG | - | chr1.1:51374054-51374073 | MS.gene89565:intron | 45.0% | |
CACACCAAAGAAGTTGAACC+AGG | - | chr1.1:51373700-51373719 | MS.gene89565:CDS | 45.0% | |
CCTATAATCGGCATCTCATC+TGG | + | chr1.1:51373965-51373984 | None:intergenic | 45.0% | |
CGGTTGAAAATATGGCTCAG+TGG | - | chr1.1:51373564-51373583 | MS.gene89565:CDS | 45.0% | |
CTCTTACAAGGAGACTTCCT+TGG | + | chr1.1:51373941-51373960 | None:intergenic | 45.0% | |
CTTACAAGGAGACTTCCTTG+GGG | + | chr1.1:51373939-51373958 | None:intergenic | 45.0% | |
GGAGTTTGAAGAAGACGGAA+TGG | - | chr1.1:51373382-51373401 | MS.gene89565:CDS | 45.0% | |
GGATATTTAACTGGCTGTGC+AGG | - | chr1.1:51374142-51374161 | MS.gene89565:intron | 45.0% | |
GGCTCAGTGGAAAGTTGTTA+AGG | - | chr1.1:51373577-51373596 | MS.gene89565:CDS | 45.0% | |
GGTCTTACCCTCCTAATCAT+AGG | - | chr1.1:51373234-51373253 | MS.gene89565:CDS | 45.0% | |
GGTGTGGAGTTTGAAGAAGA+CGG | - | chr1.1:51373377-51373396 | MS.gene89565:CDS | 45.0% | |
GTCCTATGCCTACATGTGAA+AGG | - | chr1.1:51373471-51373490 | MS.gene89565:CDS | 45.0% | |
GTTAACAGGTGTAGTTGTCC+CGG | + | chr1.1:51373768-51373787 | None:intergenic | 45.0% | |
TAGCATCAACTGGGATTTCC+TGG | + | chr1.1:51373721-51373740 | None:intergenic | 45.0% | |
TAGGAACAGTTGGGTCCTAT+TGG | - | chr1.1:51373981-51374000 | MS.gene89565:CDS | 45.0% | |
TCCCTTTCACATGTAGGCAT+AGG | + | chr1.1:51373476-51373495 | None:intergenic | 45.0% | |
TCGAATTGGTTGGGTTCATC+CGG | - | chr1.1:51373746-51373765 | MS.gene89565:CDS | 45.0% | |
TCGATAGGCTAGCATCAACT+GGG | + | chr1.1:51373730-51373749 | None:intergenic | 45.0% | |
TCGTGTCAAGGAAATTTCGG+AGG | - | chr1.1:51373673-51373692 | MS.gene89565:CDS | 45.0% | |
TGAAGAAGGTGGAAAAGAGG+AGG | - | chr1.1:51373139-51373158 | MS.gene89565:CDS | 45.0% | |
TGGAGTGATCCTGAACCAAA+GGG | + | chr1.1:51372843-51372862 | None:intergenic | 45.0% | |
TGTTGTGAGATGCTCCTATC+AGG | + | chr1.1:51373827-51373846 | None:intergenic | 45.0% | |
TTCGATAGGCTAGCATCAAC+TGG | + | chr1.1:51373731-51373750 | None:intergenic | 45.0% | |
TTGGAGTGATCCTGAACCAA+AGG | + | chr1.1:51372844-51372863 | None:intergenic | 45.0% | |
! | AAGGCTTGTTTGTATGCTGG+TGG | - | chr1.1:51373788-51373807 | MS.gene89565:intron | 45.0% |
! | ATGCTACGCCATTTGAGACA+AGG | - | chr1.1:51374183-51374202 | MS.gene89565:intron | 45.0% |
! | CCAGATGAGATGCCGATTAT+AGG | - | chr1.1:51373962-51373981 | MS.gene89565:CDS | 45.0% |
! | GAGTCTGTTTTGCCTGAAGA+AGG | - | chr1.1:51373125-51373144 | MS.gene89565:CDS | 45.0% |
! | GCTAGCCTATCGAATTGGTT+GGG | - | chr1.1:51373737-51373756 | MS.gene89565:CDS | 45.0% |
! | GTTCAACTTCTTTGGTGTGC+CGG | + | chr1.1:51373699-51373718 | None:intergenic | 45.0% |
! | TAGTGATGATGATGAGGAGG+AGG | - | chr1.1:51373322-51373341 | MS.gene89565:CDS | 45.0% |
! | TCCTCTTTTCCACCTTCTTC+AGG | + | chr1.1:51373140-51373159 | None:intergenic | 45.0% |
! | TCTGTTTTGCCTGAAGAAGG+TGG | - | chr1.1:51373128-51373147 | MS.gene89565:CDS | 45.0% |
! | TGCTAGCCTATCGAATTGGT+TGG | - | chr1.1:51373736-51373755 | MS.gene89565:CDS | 45.0% |
!! | GATAGGAGCATCTCACAACA+AGG | - | chr1.1:51373827-51373846 | MS.gene89565:intron | 45.0% |
!!! | GCGGTTGTGTTTTTTGGGTT+TGG | + | chr1.1:51372579-51372598 | None:intergenic | 45.0% |
ACTGGCTGTGCAGGATAAGA+AGG | - | chr1.1:51374151-51374170 | MS.gene89565:intron | 50.0% | |
AGGTGGAAAAGAGGAGGCTT+TGG | - | chr1.1:51373145-51373164 | MS.gene89565:CDS | 50.0% | |
CGAATTGGTTGGGTTCATCC+GGG | - | chr1.1:51373747-51373766 | MS.gene89565:CDS | 50.0% | |
GAATGGGATACTCGAAGTCG+AGG | - | chr1.1:51373399-51373418 | MS.gene89565:CDS | 50.0% | |
GCCTGAAGAAGGTGGAAAAG+AGG | - | chr1.1:51373136-51373155 | MS.gene89565:CDS | 50.0% | |
GCTTGTTTGTATGCTGGTGG+TGG | - | chr1.1:51373791-51373810 | MS.gene89565:intron | 50.0% | |
GTCAAGGAAATTTCGGAGGC+CGG | - | chr1.1:51373677-51373696 | MS.gene89565:CDS | 50.0% | |
! | TGATGATGATGAGGAGGAGG+AGG | - | chr1.1:51373325-51373344 | MS.gene89565:CDS | 50.0% |
!! | TCTTTCTGAGGCCTTGATCG+TGG | + | chr1.1:51373614-51373633 | None:intergenic | 50.0% |
!! | TTGTATGCTGGTGGTGGCAT+CGG | - | chr1.1:51373797-51373816 | MS.gene89565:intron | 50.0% |
CTTCCTTGGGGACGATGTAG+CGG | + | chr1.1:51373927-51373946 | None:intergenic | 55.0% | |
GATGATGAGGAGGAGGAGGA+TGG | - | chr1.1:51373329-51373348 | MS.gene89565:CDS | 55.0% | |
GGGATACTCGAAGTCGAGGA+AGG | - | chr1.1:51373403-51373422 | MS.gene89565:CDS | 55.0% | |
TTTCCGCTACATCGTCCCCA+AGG | - | chr1.1:51373921-51373940 | MS.gene89565:CDS | 55.0% | |
! | GGAAAAGAGGAGGCTTTGGC+TGG | - | chr1.1:51373149-51373168 | MS.gene89565:CDS | 55.0% |
!! | GTGGCATCGGTACTCCTGAT+AGG | - | chr1.1:51373810-51373829 | MS.gene89565:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 51372545 | 51374271 | 51372545 | ID=MS.gene89565 |
chr1.1 | mRNA | 51372545 | 51374271 | 51372545 | ID=MS.gene89565.t1;Parent=MS.gene89565 |
chr1.1 | exon | 51374203 | 51374271 | 51374203 | ID=MS.gene89565.t1.exon1;Parent=MS.gene89565.t1 |
chr1.1 | CDS | 51374203 | 51374271 | 51374203 | ID=cds.MS.gene89565.t1;Parent=MS.gene89565.t1 |
chr1.1 | exon | 51373914 | 51374014 | 51373914 | ID=MS.gene89565.t1.exon2;Parent=MS.gene89565.t1 |
chr1.1 | CDS | 51373914 | 51374014 | 51373914 | ID=cds.MS.gene89565.t1;Parent=MS.gene89565.t1 |
chr1.1 | exon | 51372741 | 51373797 | 51372741 | ID=MS.gene89565.t1.exon3;Parent=MS.gene89565.t1 |
chr1.1 | CDS | 51372741 | 51373797 | 51372741 | ID=cds.MS.gene89565.t1;Parent=MS.gene89565.t1 |
chr1.1 | exon | 51372545 | 51372652 | 51372545 | ID=MS.gene89565.t1.exon4;Parent=MS.gene89565.t1 |
chr1.1 | CDS | 51372545 | 51372652 | 51372545 | ID=cds.MS.gene89565.t1;Parent=MS.gene89565.t1 |
Gene Sequence |
Protein sequence |