AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89565


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89565.t1 MTR_1g069610 89.207 454 34 4 1 444 1 449 0.0 725
MS.gene89565.t1 MTR_3g450760 56.061 66 25 1 370 431 333 398 1.17e-15 79.0
MS.gene89565.t1 MTR_1g073670 28.076 317 185 8 1 305 1 286 2.65e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89565.t1 AT1G04030 41.737 472 190 21 1 429 1 430 6.90e-73 236
MS.gene89565.t1 AT1G04030 41.737 472 190 21 1 429 1 430 6.90e-73 236
MS.gene89565.t1 AT5G44040 38.621 435 190 17 1 388 1 405 1.08e-60 203
MS.gene89565.t1 AT2G33400 29.167 312 150 11 1 305 1 248 6.14e-15 75.1
MS.gene89565.t1 AT1G06660 29.388 245 109 9 202 442 266 450 1.83e-14 75.9
MS.gene89565.t1 AT2G30820 53.425 73 28 3 372 441 326 395 1.90e-14 75.5
MS.gene89565.t1 AT2G30820 53.425 73 28 3 372 441 326 395 1.90e-14 75.5

Find 122 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCACCTTCATCCTTTAA+AGG 0.187029 1.1:-51372772 MS.gene89565:CDS
ATTTCCTGGTTCAACTTCTT+TGG 0.209021 1.1:+51373090 None:intergenic
CCAGATGAGATGCCGATTAT+AGG 0.229389 1.1:-51372832 MS.gene89565:CDS
CTGTACTTGCTAGTTGTGTT+TGG 0.276793 1.1:+51372745 None:intergenic
TGAAGGAGTATGTAGGGTTT+TGG 0.283066 1.1:+51373934 None:intergenic
GAAAGGGATGTAAACTCTAT+TGG 0.307848 1.1:-51373306 MS.gene89565:CDS
TAGAGAAGAAGATGATGAAT+TGG 0.315196 1.1:-51373439 MS.gene89565:CDS
AAAGGGATGTAAACTCTATT+GGG 0.318157 1.1:-51373305 MS.gene89565:CDS
GCTGAATCCGGTTGAAAATA+TGG 0.327930 1.1:-51373238 MS.gene89565:CDS
ATTTCGTGTCAAGGAAATTT+CGG 0.330928 1.1:-51373124 MS.gene89565:CDS
TGGAATTCTAATGAGGGTTC+TGG 0.341982 1.1:-51372793 MS.gene89565:CDS
TGTGTTTGGAATTCCTTTAA+AGG 0.345947 1.1:+51372759 None:intergenic
CCTATAATCGGCATCTCATC+TGG 0.351409 1.1:+51372832 None:intergenic
TAGGAACAGTTGGGTCCTAT+TGG 0.353133 1.1:-51372813 MS.gene89565:CDS
TAGCATCAACTGGGATTTCC+TGG 0.358117 1.1:+51373076 None:intergenic
TTCGATAGGCTAGCATCAAC+TGG 0.358795 1.1:+51373066 None:intergenic
CACAAGAAGACGACTTTGAA+TGG 0.373294 1.1:+51373616 None:intergenic
ATACAATGTCCCTTTGGTTC+AGG 0.374830 1.1:-51373963 MS.gene89565:CDS
AAGAAGAAGTACTTGATGAT+TGG 0.376669 1.1:-51373506 MS.gene89565:CDS
TCGAATTGGTTGGGTTCATC+CGG 0.379742 1.1:-51373048 MS.gene89565:CDS
TGTTGTGAGATGCTCCTATC+AGG 0.381760 1.1:+51372970 None:intergenic
CTAAAATAGGCCTATCTTCA+AGG 0.385904 1.1:+51372926 None:intergenic
TTCTCTAGCCTTGTCTCAAA+TGG 0.386868 1.1:+51372603 None:intergenic
TCTGTGACTTCGAATTCAAC+TGG 0.389893 1.1:-51373582 MS.gene89565:CDS
TACAAACAAGCCTTGTTAAC+AGG 0.398342 1.1:+51373015 None:intergenic
ATCATAGGTATCAGAATTGT+AGG 0.406684 1.1:-51373545 MS.gene89565:CDS
CTCTTACAAGGAGACTTCCT+TGG 0.412158 1.1:+51372856 None:intergenic
TTCAGGCAAAACAGACTCAT+AGG 0.416926 1.1:+51373674 None:intergenic
CAATTCTGATACCTATGATT+AGG 0.419539 1.1:+51373549 None:intergenic
CAGTGATAAGCCTTGAAGAT+AGG 0.427800 1.1:-51372936 MS.gene89565:CDS
GACCCAACTGTTCCTATAAT+CGG 0.428480 1.1:+51372820 None:intergenic
GAAGACGACTTTGAATGGTT+TGG 0.430474 1.1:+51373621 None:intergenic
AGAAGAAGTACTTGATGATT+GGG 0.432512 1.1:-51373505 MS.gene89565:CDS
GGTCTTACCCTCCTAATCAT+AGG 0.436853 1.1:-51373560 MS.gene89565:CDS
TCTTACAAGGAGACTTCCTT+GGG 0.437790 1.1:+51372857 None:intergenic
GGAATTCCTTTAAAGGATGA+AGG 0.441727 1.1:+51372766 None:intergenic
ACCGTTAAAGCACCTAAAAT+AGG 0.447229 1.1:+51372913 None:intergenic
ATTCTAGTGAAGGAGTATGT+AGG 0.448451 1.1:+51373927 None:intergenic
TAGTGATGATGATGAGGAGG+AGG 0.450003 1.1:-51373472 MS.gene89565:CDS
TGCAGGATAAGAAGGTGAAT+TGG 0.452750 1.1:-51372635 MS.gene89565:intron
GGCTCAGTGGAAAGTTGTTA+AGG 0.459239 1.1:-51373217 MS.gene89565:CDS
GTGTAGGGATAAAACTGAAC+AGG 0.461110 1.1:-51373781 MS.gene89565:intron
AACAAGGCTTGTTTGTATGC+TGG 0.461233 1.1:-51373009 MS.gene89565:CDS
AGAGAAGAAGATGATGAATT+GGG 0.461880 1.1:-51373438 MS.gene89565:CDS
AACACTTCTGTCTCTAGCAT+TGG 0.471678 1.1:+51373275 None:intergenic
TGCTAGCCTATCGAATTGGT+TGG 0.473010 1.1:-51373058 MS.gene89565:CDS
TTGATGCTAGCCTATCGAAT+TGG 0.473087 1.1:-51373062 MS.gene89565:CDS
TGTTCATTCTGTGCTGAATC+CGG 0.473897 1.1:-51373250 MS.gene89565:CDS
GGAAAAGAGGAGGCTTTGGC+TGG 0.475470 1.1:-51373645 MS.gene89565:CDS
TTTACATCCCTTTCACATGT+AGG 0.478384 1.1:+51373315 None:intergenic
AATAGAGATGCTGCAGAAGC+TGG 0.478976 1.1:-51372573 MS.gene89565:CDS
ACAGCAATACAATGTCCCTT+TGG 0.481214 1.1:-51373969 MS.gene89565:CDS
GTCCTATTGGAATTCTAATG+AGG 0.486281 1.1:-51372800 MS.gene89565:CDS
AGGTGGAAAAGAGGAGGCTT+TGG 0.488583 1.1:-51373649 MS.gene89565:CDS
GCTAGCCTATCGAATTGGTT+GGG 0.489992 1.1:-51373057 MS.gene89565:CDS
GTGGCATCGGTACTCCTGAT+AGG 0.491698 1.1:-51372984 MS.gene89565:CDS
ATGCCGATTATAGGAACAGT+TGG 0.502557 1.1:-51372823 MS.gene89565:CDS
AGAGGTTTCATTTCGTGTCA+AGG 0.504181 1.1:-51373133 MS.gene89565:CDS
GTCAAGGAAATTTCGGAGGC+CGG 0.506460 1.1:-51373117 MS.gene89565:CDS
TCCTATGCCTACATGTGAAA+GGG 0.507929 1.1:-51373322 MS.gene89565:CDS
GTTCAACTTCTTTGGTGTGC+CGG 0.508061 1.1:+51373098 None:intergenic
TTCTGATACCTATGATTAGG+AGG 0.509018 1.1:+51373552 None:intergenic
GCCTGAAGAAGGTGGAAAAG+AGG 0.511476 1.1:-51373658 MS.gene89565:CDS
CTAAAAGAACACCACGATCA+AGG 0.516379 1.1:-51373194 MS.gene89565:CDS
ACTGGCTGTGCAGGATAAGA+AGG 0.516689 1.1:-51372643 MS.gene89565:intron
GATAAAACTGAACAGGAACT+TGG 0.520043 1.1:-51373774 MS.gene89565:CDS
TGATGATGATGAGGAGGAGG+AGG 0.523004 1.1:-51373469 MS.gene89565:CDS
TTGTATGCTGGTGGTGGCAT+CGG 0.525729 1.1:-51372997 MS.gene89565:CDS
GAAATGAAACCTCTGTATCA+TGG 0.527422 1.1:+51373142 None:intergenic
TTCTAGTGAAGGAGTATGTA+GGG 0.527537 1.1:+51373928 None:intergenic
CGAATTGGTTGGGTTCATCC+GGG 0.529197 1.1:-51373047 MS.gene89565:CDS
GAGTTTGAAGAAGACGGAAT+GGG 0.529728 1.1:-51373411 MS.gene89565:CDS
TCATGTGTTTACTGAGGAAG+TGG 0.530102 1.1:-51373349 MS.gene89565:CDS
TTGCTGTAGGGATAAAATTG+AGG 0.530685 1.1:-51373751 MS.gene89565:CDS
ATCTCATCTGGACTCTTACA+AGG 0.536876 1.1:+51372844 None:intergenic
GTTAACAGGTGTAGTTGTCC+CGG 0.536876 1.1:+51373029 None:intergenic
GATGATGAGGAGGAGGAGGA+TGG 0.539564 1.1:-51373465 MS.gene89565:CDS
AGAAGATGATGAATTGGGTG+TGG 0.539828 1.1:-51373433 MS.gene89565:CDS
GGAGTTTGAAGAAGACGGAA+TGG 0.539838 1.1:-51373412 MS.gene89565:CDS
ACCCTCATTAGAATTCCAAT+AGG 0.541146 1.1:+51372798 None:intergenic
CTAACAAAATTCTCTTTCTG+AGG 0.541406 1.1:+51373171 None:intergenic
GTCCTATGCCTACATGTGAA+AGG 0.549863 1.1:-51373323 MS.gene89565:CDS
ATAATTGCTTACTGTGATTG+TGG 0.550999 1.1:+51373902 None:intergenic
GACAACTACACCTGTTAACA+AGG 0.558489 1.1:-51373025 MS.gene89565:CDS
GCTTGTTTGTATGCTGGTGG+TGG 0.559146 1.1:-51373003 MS.gene89565:CDS
TTGGAGTGATCCTGAACCAA+AGG 0.559802 1.1:+51373953 None:intergenic
CTGTGACTTCGAATTCAACT+GGG 0.563033 1.1:-51373581 MS.gene89565:CDS
GGTGTGGAGTTTGAAGAAGA+CGG 0.565341 1.1:-51373417 MS.gene89565:CDS
TTACTTGAAGCACGTTGTTG+CGG 0.569342 1.1:+51374199 None:intergenic
CACACCAAAGAAGTTGAACC+AGG 0.569677 1.1:-51373094 MS.gene89565:CDS
TCCTATTGGAATTCTAATGA+GGG 0.572382 1.1:-51372799 MS.gene89565:CDS
TGGAGTGATCCTGAACCAAA+GGG 0.574081 1.1:+51373954 None:intergenic
TGCCGATTATAGGAACAGTT+GGG 0.574954 1.1:-51372822 MS.gene89565:CDS
ACAGGAACTTGGTTGCTGTA+GGG 0.576162 1.1:-51373763 MS.gene89565:CDS
TCTTTCTGAGGCCTTGATCG+TGG 0.579965 1.1:+51373183 None:intergenic
TCATAGGTATCAGAATTGTA+GGG 0.580930 1.1:-51373544 MS.gene89565:CDS
TGAAACCTCTGTATCATGGT+TGG 0.594134 1.1:+51373146 None:intergenic
CTTCCTTGGGGACGATGTAG+CGG 0.603133 1.1:+51372870 None:intergenic
ATGAACCCAACCAATTCGAT+AGG 0.604616 1.1:+51373052 None:intergenic
TTTCCGCTACATCGTCCCCA+AGG 0.613077 1.1:-51372873 MS.gene89565:CDS
GGGATACTCGAAGTCGAGGA+AGG 0.614773 1.1:-51373391 MS.gene89565:CDS
AACAGGAACTTGGTTGCTGT+AGG 0.616293 1.1:-51373764 MS.gene89565:CDS
AAAGGGACATTGTATTGCTG+TGG 0.618091 1.1:+51373971 None:intergenic
TCGTGTCAAGGAAATTTCGG+AGG 0.626776 1.1:-51373121 MS.gene89565:CDS
GAATGGGATACTCGAAGTCG+AGG 0.634105 1.1:-51373395 MS.gene89565:CDS
AAGGCTTGTTTGTATGCTGG+TGG 0.635824 1.1:-51373006 MS.gene89565:CDS
CTGTAGGGATAAAATTGAGG+AGG 0.639832 1.1:-51373748 MS.gene89565:CDS
TCTGATACCTATGATTAGGA+GGG 0.641103 1.1:+51373553 None:intergenic
TCTTAGTGATGATGATGAGG+AGG 0.641753 1.1:-51373475 MS.gene89565:CDS
TCCCTTTCACATGTAGGCAT+AGG 0.644867 1.1:+51373321 None:intergenic
GATTGTGGTGATTCTAGTGA+AGG 0.644878 1.1:+51373917 None:intergenic
AAGGGATGTAAACTCTATTG+GGG 0.647688 1.1:-51373304 MS.gene89565:CDS
ATGCTACGCCATTTGAGACA+AGG 0.659616 1.1:-51372611 MS.gene89565:CDS
TGATCTTAGTGATGATGATG+AGG 0.661250 1.1:-51373478 MS.gene89565:CDS
TCGATAGGCTAGCATCAACT+GGG 0.664173 1.1:+51373067 None:intergenic
TGAAGAAGGTGGAAAAGAGG+AGG 0.666349 1.1:-51373655 MS.gene89565:CDS
GATAGGAGCATCTCACAACA+AGG 0.666708 1.1:-51372967 MS.gene89565:CDS
TAGTACCAACCATGATACAG+AGG 0.668642 1.1:-51373151 MS.gene89565:CDS
CGGTTGAAAATATGGCTCAG+TGG 0.681764 1.1:-51373230 MS.gene89565:CDS
CACAACTAGCAAGTACAGAG+AGG 0.701957 1.1:-51372740 MS.gene89565:intron
TATTGATCATGTGTTTACTG+AGG 0.741740 1.1:-51373355 MS.gene89565:CDS
CTTACAAGGAGACTTCCTTG+GGG 0.775099 1.1:+51372858 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAATAGAAAGTAAAAA+GGG + chr1.1:51372636-51372655 None:intergenic 15.0%
!! GTAAAAGAAATTAAGATAAA+GGG + chr1.1:51372780-51372799 None:intergenic 15.0%
!! TGTAAAAGAAATTAAGATAA+AGG + chr1.1:51372781-51372800 None:intergenic 15.0%
!!! AAAATAGAGCTAAATTTTTT+AGG - chr1.1:51372741-51372760 MS.gene89565:CDS 15.0%
!! AGAAAATAGAAAGTAAAAAG+GGG + chr1.1:51372635-51372654 None:intergenic 20.0%
!! CAAGAAAATAGAAAGTAAAA+AGG + chr1.1:51372637-51372656 None:intergenic 20.0%
!!! AGCTAAATTTTTTAGGTTTT+AGG - chr1.1:51372748-51372767 MS.gene89565:CDS 20.0%
!!! TTCTTATTTGGATATTTAAC+TGG - chr1.1:51374133-51374152 MS.gene89565:intron 20.0%
! AAAATAGAAAGTAAAAAGGG+GGG + chr1.1:51372633-51372652 None:intergenic 25.0%
! ATTGGAAGTAAACAAAGAAA+AGG + chr1.1:51372707-51372726 None:intergenic 25.0%
! GAAAATAGAAAGTAAAAAGG+GGG + chr1.1:51372634-51372653 None:intergenic 25.0%
! TTGGAAGTAAACAAAGAAAA+GGG + chr1.1:51372706-51372725 None:intergenic 25.0%
!!! ATTTTCACTCATTAGTTTGA+TGG - chr1.1:51374106-51374125 MS.gene89565:intron 25.0%
!!! TGTTTTTTTGTTGTTGTGTA+GGG - chr1.1:51372998-51373017 MS.gene89565:CDS 25.0%
!!! TTGTTTTTTTGTTGTTGTGT+AGG - chr1.1:51372997-51373016 MS.gene89565:CDS 25.0%
!!! TTTGATGGTGAATTCTTATT+TGG - chr1.1:51374121-51374140 MS.gene89565:intron 25.0%
AAAGGGATGTAAACTCTATT+GGG - chr1.1:51373489-51373508 MS.gene89565:CDS 30.0%
AAATAGAAAGTAAAAAGGGG+GGG + chr1.1:51372632-51372651 None:intergenic 30.0%
AAGCATCCAAAAATAGAAAG+TGG + chr1.1:51372935-51372954 None:intergenic 30.0%
AGAGAAGAAGATGATGAATT+GGG - chr1.1:51373356-51373375 MS.gene89565:CDS 30.0%
ATAATTGCTTACTGTGATTG+TGG + chr1.1:51372895-51372914 None:intergenic 30.0%
ATCATAGGTATCAGAATTGT+AGG - chr1.1:51373249-51373268 MS.gene89565:CDS 30.0%
ATTTCGTGTCAAGGAAATTT+CGG - chr1.1:51373670-51373689 MS.gene89565:CDS 30.0%
CAATTCTGATACCTATGATT+AGG + chr1.1:51373248-51373267 None:intergenic 30.0%
CTAACAAAATTCTCTTTCTG+AGG + chr1.1:51373626-51373645 None:intergenic 30.0%
TAGAGAAGAAGATGATGAAT+TGG - chr1.1:51373355-51373374 MS.gene89565:CDS 30.0%
TATTGATCATGTGTTTACTG+AGG - chr1.1:51373439-51373458 MS.gene89565:CDS 30.0%
TCATAGGTATCAGAATTGTA+GGG - chr1.1:51373250-51373269 MS.gene89565:CDS 30.0%
TCCTATTGGAATTCTAATGA+GGG - chr1.1:51373995-51374014 MS.gene89565:CDS 30.0%
! AAGACGAAGTGAATTTTTGT+AGG - chr1.1:51374079-51374098 MS.gene89565:intron 30.0%
! TGTGTTTGGAATTCCTTTAA+AGG + chr1.1:51374038-51374057 None:intergenic 30.0%
!! AAGAAGAAGTACTTGATGAT+TGG - chr1.1:51373288-51373307 MS.gene89565:CDS 30.0%
!! AGAAGAAGTACTTGATGATT+GGG - chr1.1:51373289-51373308 MS.gene89565:CDS 30.0%
AAGGGATGTAAACTCTATTG+GGG - chr1.1:51373490-51373509 MS.gene89565:CDS 35.0%
ACCCTCATTAGAATTCCAAT+AGG + chr1.1:51373999-51374018 None:intergenic 35.0%
ATTTCCTGGTTCAACTTCTT+TGG + chr1.1:51373707-51373726 None:intergenic 35.0%
CTAAAATAGGCCTATCTTCA+AGG + chr1.1:51373871-51373890 None:intergenic 35.0%
GAAAGGGATGTAAACTCTAT+TGG - chr1.1:51373488-51373507 MS.gene89565:CDS 35.0%
GAAATGAAACCTCTGTATCA+TGG + chr1.1:51373655-51373674 None:intergenic 35.0%
GATAAAACTGAACAGGAACT+TGG - chr1.1:51373020-51373039 MS.gene89565:CDS 35.0%
GTCCTATTGGAATTCTAATG+AGG - chr1.1:51373994-51374013 MS.gene89565:CDS 35.0%
TCTGATACCTATGATTAGGA+GGG + chr1.1:51373244-51373263 None:intergenic 35.0%
TTCTGATACCTATGATTAGG+AGG + chr1.1:51373245-51373264 None:intergenic 35.0%
TTGCTGTAGGGATAAAATTG+AGG - chr1.1:51373043-51373062 MS.gene89565:CDS 35.0%
TTTACATCCCTTTCACATGT+AGG + chr1.1:51373482-51373501 None:intergenic 35.0%
! ACCGTTAAAGCACCTAAAAT+AGG + chr1.1:51373884-51373903 None:intergenic 35.0%
! AGACTCATAGGTTTTCACAT+TGG + chr1.1:51373111-51373130 None:intergenic 35.0%
! ATTCTAGTGAAGGAGTATGT+AGG + chr1.1:51372870-51372889 None:intergenic 35.0%
! CACTCACCACTTTCTATTTT+TGG - chr1.1:51372926-51372945 MS.gene89565:CDS 35.0%
! CTTGAAGATAGGCCTATTTT+AGG - chr1.1:51373869-51373888 MS.gene89565:intron 35.0%
! GGAATTCCTTTAAAGGATGA+AGG + chr1.1:51374031-51374050 None:intergenic 35.0%
! TGATCTTAGTGATGATGATG+AGG - chr1.1:51373316-51373335 MS.gene89565:CDS 35.0%
! TTCTAGTGAAGGAGTATGTA+GGG + chr1.1:51372869-51372888 None:intergenic 35.0%
!! GCCTATTTTAGGTGCTTTAA+CGG - chr1.1:51373880-51373899 MS.gene89565:intron 35.0%
!! TACAAACAAGCCTTGTTAAC+AGG + chr1.1:51373782-51373801 None:intergenic 35.0%
!! TATTTTAGGTGCTTTAACGG+TGG - chr1.1:51373883-51373902 MS.gene89565:intron 35.0%
!!! TTGTTGCGGTTGTGTTTTTT+GGG + chr1.1:51372584-51372603 None:intergenic 35.0%
AAAGGGACATTGTATTGCTG+TGG + chr1.1:51372826-51372845 None:intergenic 40.0%
AACACTTCTGTCTCTAGCAT+TGG + chr1.1:51373522-51373541 None:intergenic 40.0%
ACAGCAATACAATGTCCCTT+TGG - chr1.1:51372825-51372844 MS.gene89565:CDS 40.0%
AGAAGATGATGAATTGGGTG+TGG - chr1.1:51373361-51373380 MS.gene89565:CDS 40.0%
AGAGGTTTCATTTCGTGTCA+AGG - chr1.1:51373661-51373680 MS.gene89565:CDS 40.0%
ATCTCATCTGGACTCTTACA+AGG + chr1.1:51373953-51373972 None:intergenic 40.0%
ATGAACCCAACCAATTCGAT+AGG + chr1.1:51373745-51373764 None:intergenic 40.0%
CACAAGAAGACGACTTTGAA+TGG + chr1.1:51373181-51373200 None:intergenic 40.0%
CAGTGATAAGCCTTGAAGAT+AGG - chr1.1:51373858-51373877 MS.gene89565:intron 40.0%
CTAAAAGAACACCACGATCA+AGG - chr1.1:51373600-51373619 MS.gene89565:CDS 40.0%
CTGTAGGGATAAAATTGAGG+AGG - chr1.1:51373046-51373065 MS.gene89565:CDS 40.0%
CTGTGACTTCGAATTCAACT+GGG - chr1.1:51373213-51373232 MS.gene89565:CDS 40.0%
GAAGACGACTTTGAATGGTT+TGG + chr1.1:51373176-51373195 None:intergenic 40.0%
GACAACTACACCTGTTAACA+AGG - chr1.1:51373769-51373788 MS.gene89565:CDS 40.0%
GACCCAACTGTTCCTATAAT+CGG + chr1.1:51373977-51373996 None:intergenic 40.0%
GAGTTTGAAGAAGACGGAAT+GGG - chr1.1:51373383-51373402 MS.gene89565:CDS 40.0%
GATTGTGGTGATTCTAGTGA+AGG + chr1.1:51372880-51372899 None:intergenic 40.0%
GCTGAATCCGGTTGAAAATA+TGG - chr1.1:51373556-51373575 MS.gene89565:CDS 40.0%
GGTTCACCTTCATCCTTTAA+AGG - chr1.1:51374022-51374041 MS.gene89565:intron 40.0%
GTGTAGGGATAAAACTGAAC+AGG - chr1.1:51373013-51373032 MS.gene89565:CDS 40.0%
TAGTACCAACCATGATACAG+AGG - chr1.1:51373643-51373662 MS.gene89565:CDS 40.0%
TCATGTGTTTACTGAGGAAG+TGG - chr1.1:51373445-51373464 MS.gene89565:CDS 40.0%
TCCTATGCCTACATGTGAAA+GGG - chr1.1:51373472-51373491 MS.gene89565:CDS 40.0%
TCTGTGACTTCGAATTCAAC+TGG - chr1.1:51373212-51373231 MS.gene89565:CDS 40.0%
TCTTACAAGGAGACTTCCTT+GGG + chr1.1:51373940-51373959 None:intergenic 40.0%
TGAAACCTCTGTATCATGGT+TGG + chr1.1:51373651-51373670 None:intergenic 40.0%
TGCAGGATAAGAAGGTGAAT+TGG - chr1.1:51374159-51374178 MS.gene89565:intron 40.0%
TGGAATTCTAATGAGGGTTC+TGG - chr1.1:51374001-51374020 MS.gene89565:intron 40.0%
TGTTCATTCTGTGCTGAATC+CGG - chr1.1:51373544-51373563 MS.gene89565:CDS 40.0%
TTACTTGAAGCACGTTGTTG+CGG + chr1.1:51372598-51372617 None:intergenic 40.0%
TTCAGGCAAAACAGACTCAT+AGG + chr1.1:51373123-51373142 None:intergenic 40.0%
! AACAAGGCTTGTTTGTATGC+TGG - chr1.1:51373785-51373804 MS.gene89565:intron 40.0%
! ATACAATGTCCCTTTGGTTC+AGG - chr1.1:51372831-51372850 MS.gene89565:CDS 40.0%
! ATGCCGATTATAGGAACAGT+TGG - chr1.1:51373971-51373990 MS.gene89565:CDS 40.0%
! CACTGAGCCATATTTTCAAC+CGG + chr1.1:51373566-51373585 None:intergenic 40.0%
! CTGTACTTGCTAGTTGTGTT+TGG + chr1.1:51374052-51374071 None:intergenic 40.0%
! TCTTAGTGATGATGATGAGG+AGG - chr1.1:51373319-51373338 MS.gene89565:CDS 40.0%
! TGCCGATTATAGGAACAGTT+GGG - chr1.1:51373972-51373991 MS.gene89565:CDS 40.0%
! TTGATGCTAGCCTATCGAAT+TGG - chr1.1:51373732-51373751 MS.gene89565:CDS 40.0%
!! GGTTGTTTTCTTGGTTGCTT+TGG - chr1.1:51372548-51372567 MS.gene89565:CDS 40.0%
!! TGAAGGAGTATGTAGGGTTT+TGG + chr1.1:51372863-51372882 None:intergenic 40.0%
!! TTCTCTAGCCTTGTCTCAAA+TGG + chr1.1:51374194-51374213 None:intergenic 40.0%
!! TTTTGCTGCTGAGAAAGCAT+TGG + chr1.1:51372725-51372744 None:intergenic 40.0%
!!! GTTGTGTTTTTTGGGTTTGG+AGG + chr1.1:51372576-51372595 None:intergenic 40.0%
!!! GTTGTTGCGGTTGTGTTTTT+TGG + chr1.1:51372585-51372604 None:intergenic 40.0%
AACAGGAACTTGGTTGCTGT+AGG - chr1.1:51373030-51373049 MS.gene89565:CDS 45.0%
AATAGAGATGCTGCAGAAGC+TGG - chr1.1:51374221-51374240 MS.gene89565:CDS 45.0%
ACAGGAACTTGGTTGCTGTA+GGG - chr1.1:51373031-51373050 MS.gene89565:CDS 45.0%
CACAACTAGCAAGTACAGAG+AGG - chr1.1:51374054-51374073 MS.gene89565:intron 45.0%
CACACCAAAGAAGTTGAACC+AGG - chr1.1:51373700-51373719 MS.gene89565:CDS 45.0%
CCTATAATCGGCATCTCATC+TGG + chr1.1:51373965-51373984 None:intergenic 45.0%
CGGTTGAAAATATGGCTCAG+TGG - chr1.1:51373564-51373583 MS.gene89565:CDS 45.0%
CTCTTACAAGGAGACTTCCT+TGG + chr1.1:51373941-51373960 None:intergenic 45.0%
CTTACAAGGAGACTTCCTTG+GGG + chr1.1:51373939-51373958 None:intergenic 45.0%
GGAGTTTGAAGAAGACGGAA+TGG - chr1.1:51373382-51373401 MS.gene89565:CDS 45.0%
GGATATTTAACTGGCTGTGC+AGG - chr1.1:51374142-51374161 MS.gene89565:intron 45.0%
GGCTCAGTGGAAAGTTGTTA+AGG - chr1.1:51373577-51373596 MS.gene89565:CDS 45.0%
GGTCTTACCCTCCTAATCAT+AGG - chr1.1:51373234-51373253 MS.gene89565:CDS 45.0%
GGTGTGGAGTTTGAAGAAGA+CGG - chr1.1:51373377-51373396 MS.gene89565:CDS 45.0%
GTCCTATGCCTACATGTGAA+AGG - chr1.1:51373471-51373490 MS.gene89565:CDS 45.0%
GTTAACAGGTGTAGTTGTCC+CGG + chr1.1:51373768-51373787 None:intergenic 45.0%
TAGCATCAACTGGGATTTCC+TGG + chr1.1:51373721-51373740 None:intergenic 45.0%
TAGGAACAGTTGGGTCCTAT+TGG - chr1.1:51373981-51374000 MS.gene89565:CDS 45.0%
TCCCTTTCACATGTAGGCAT+AGG + chr1.1:51373476-51373495 None:intergenic 45.0%
TCGAATTGGTTGGGTTCATC+CGG - chr1.1:51373746-51373765 MS.gene89565:CDS 45.0%
TCGATAGGCTAGCATCAACT+GGG + chr1.1:51373730-51373749 None:intergenic 45.0%
TCGTGTCAAGGAAATTTCGG+AGG - chr1.1:51373673-51373692 MS.gene89565:CDS 45.0%
TGAAGAAGGTGGAAAAGAGG+AGG - chr1.1:51373139-51373158 MS.gene89565:CDS 45.0%
TGGAGTGATCCTGAACCAAA+GGG + chr1.1:51372843-51372862 None:intergenic 45.0%
TGTTGTGAGATGCTCCTATC+AGG + chr1.1:51373827-51373846 None:intergenic 45.0%
TTCGATAGGCTAGCATCAAC+TGG + chr1.1:51373731-51373750 None:intergenic 45.0%
TTGGAGTGATCCTGAACCAA+AGG + chr1.1:51372844-51372863 None:intergenic 45.0%
! AAGGCTTGTTTGTATGCTGG+TGG - chr1.1:51373788-51373807 MS.gene89565:intron 45.0%
! ATGCTACGCCATTTGAGACA+AGG - chr1.1:51374183-51374202 MS.gene89565:intron 45.0%
! CCAGATGAGATGCCGATTAT+AGG - chr1.1:51373962-51373981 MS.gene89565:CDS 45.0%
! GAGTCTGTTTTGCCTGAAGA+AGG - chr1.1:51373125-51373144 MS.gene89565:CDS 45.0%
! GCTAGCCTATCGAATTGGTT+GGG - chr1.1:51373737-51373756 MS.gene89565:CDS 45.0%
! GTTCAACTTCTTTGGTGTGC+CGG + chr1.1:51373699-51373718 None:intergenic 45.0%
! TAGTGATGATGATGAGGAGG+AGG - chr1.1:51373322-51373341 MS.gene89565:CDS 45.0%
! TCCTCTTTTCCACCTTCTTC+AGG + chr1.1:51373140-51373159 None:intergenic 45.0%
! TCTGTTTTGCCTGAAGAAGG+TGG - chr1.1:51373128-51373147 MS.gene89565:CDS 45.0%
! TGCTAGCCTATCGAATTGGT+TGG - chr1.1:51373736-51373755 MS.gene89565:CDS 45.0%
!! GATAGGAGCATCTCACAACA+AGG - chr1.1:51373827-51373846 MS.gene89565:intron 45.0%
!!! GCGGTTGTGTTTTTTGGGTT+TGG + chr1.1:51372579-51372598 None:intergenic 45.0%
ACTGGCTGTGCAGGATAAGA+AGG - chr1.1:51374151-51374170 MS.gene89565:intron 50.0%
AGGTGGAAAAGAGGAGGCTT+TGG - chr1.1:51373145-51373164 MS.gene89565:CDS 50.0%
CGAATTGGTTGGGTTCATCC+GGG - chr1.1:51373747-51373766 MS.gene89565:CDS 50.0%
GAATGGGATACTCGAAGTCG+AGG - chr1.1:51373399-51373418 MS.gene89565:CDS 50.0%
GCCTGAAGAAGGTGGAAAAG+AGG - chr1.1:51373136-51373155 MS.gene89565:CDS 50.0%
GCTTGTTTGTATGCTGGTGG+TGG - chr1.1:51373791-51373810 MS.gene89565:intron 50.0%
GTCAAGGAAATTTCGGAGGC+CGG - chr1.1:51373677-51373696 MS.gene89565:CDS 50.0%
! TGATGATGATGAGGAGGAGG+AGG - chr1.1:51373325-51373344 MS.gene89565:CDS 50.0%
!! TCTTTCTGAGGCCTTGATCG+TGG + chr1.1:51373614-51373633 None:intergenic 50.0%
!! TTGTATGCTGGTGGTGGCAT+CGG - chr1.1:51373797-51373816 MS.gene89565:intron 50.0%
CTTCCTTGGGGACGATGTAG+CGG + chr1.1:51373927-51373946 None:intergenic 55.0%
GATGATGAGGAGGAGGAGGA+TGG - chr1.1:51373329-51373348 MS.gene89565:CDS 55.0%
GGGATACTCGAAGTCGAGGA+AGG - chr1.1:51373403-51373422 MS.gene89565:CDS 55.0%
TTTCCGCTACATCGTCCCCA+AGG - chr1.1:51373921-51373940 MS.gene89565:CDS 55.0%
! GGAAAAGAGGAGGCTTTGGC+TGG - chr1.1:51373149-51373168 MS.gene89565:CDS 55.0%
!! GTGGCATCGGTACTCCTGAT+AGG - chr1.1:51373810-51373829 MS.gene89565:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 51372545 51374271 51372545 ID=MS.gene89565
chr1.1 mRNA 51372545 51374271 51372545 ID=MS.gene89565.t1;Parent=MS.gene89565
chr1.1 exon 51374203 51374271 51374203 ID=MS.gene89565.t1.exon1;Parent=MS.gene89565.t1
chr1.1 CDS 51374203 51374271 51374203 ID=cds.MS.gene89565.t1;Parent=MS.gene89565.t1
chr1.1 exon 51373914 51374014 51373914 ID=MS.gene89565.t1.exon2;Parent=MS.gene89565.t1
chr1.1 CDS 51373914 51374014 51373914 ID=cds.MS.gene89565.t1;Parent=MS.gene89565.t1
chr1.1 exon 51372741 51373797 51372741 ID=MS.gene89565.t1.exon3;Parent=MS.gene89565.t1
chr1.1 CDS 51372741 51373797 51372741 ID=cds.MS.gene89565.t1;Parent=MS.gene89565.t1
chr1.1 exon 51372545 51372652 51372545 ID=MS.gene89565.t1.exon4;Parent=MS.gene89565.t1
chr1.1 CDS 51372545 51372652 51372545 ID=cds.MS.gene89565.t1;Parent=MS.gene89565.t1
Gene Sequence

>MS.gene89565

ATGGGTTGTTTTCTTGGTTGCTTTGGTTCCTCCAAACCCAAAAAACACAACCGCAACAACGTGCTTCAAGTAAGACTCTTCATACCCCCCCTTTTTACTTTCTATTTTCTTGCTTTAATTTCTTATCTCAGATCAAAATTTGATTTTTTTTTCAATGACCCTTTTCTTTGTTTACTTCCAATGCTTTCTCAGCAGCAAAATAGAGCTAAATTTTTTAGGTTTTAGGTTTTAACCCTTTATCTTAATTTCTTTTACAGAGAGATGCTAATAGTAGCAAGCCACAGCAATACAATGTCCCTTTGGTTCAGGATCACTCCAAAACCCTACATACTCCTTCACTAGAATCACCACAATCACAGTAAGCAATTATTTTCAACTCTTCACTCACCACTTTCTATTTTTGGATGCTTCTAATTTACATGAATTTGATATAAGAAATAAATAAATTCACTTTGTTTTTTTGTTGTTGTGTAGGGATAAAACTGAACAGGAACTTGGTTGCTGTAGGGATAAAATTGAGGAGGAACTAAGTGTTACTGTTAGAAAGAAAGTAACTTTTGACTCCAATGTGAAAACCTATGAGTCTGTTTTGCCTGAAGAAGGTGGAAAAGAGGAGGCTTTGGCTGGACCAAACCATTCAAAGTCGTCTTCTTGTGAAGATAGTAGTTCTGTGACTTCGAATTCAACTGGGTCTTACCCTCCTAATCATAGGTATCAGAATTGTAGGGATAGTGATGATGAAGAAGAAGAAGTACTTGATGATTGGGCTAGTGATCTTAGTGATGATGATGAGGAGGAGGAGGATGGAATTAGAGAAGAAGATGATGAATTGGGTGTGGAGTTTGAAGAAGACGGAATGGGATACTCGAAGTCGAGGAAGGTAAGAGATGATGTTATTGATCATGTGTTTACTGAGGAAGTGGAGAGTCCTATGCCTACATGTGAAAGGGATGTAAACTCTATTGGGGTCAATTCCAATGCTAGAGACAGAAGTGTTTATGTTCATTCTGTGCTGAATCCGGTTGAAAATATGGCTCAGTGGAAAGTTGTTAAGGCTAAAAGAACACCACGATCAAGGCCTCAGAAAGAGAATTTTGTTAGTACCAACCATGATACAGAGGTTTCATTTCGTGTCAAGGAAATTTCGGAGGCCGGCACACCAAAGAAGTTGAACCAGGAAATCCCAGTTGATGCTAGCCTATCGAATTGGTTGGGTTCATCCGGGACAACTACACCTGTTAACAAGGCTTGTTTGTATGCTGGTGGTGGCATCGGTACTCCTGATAGGAGCATCTCACAACAAGGTTCAAATTCAGTGATAAGCCTTGAAGATAGGCCTATTTTAGGTGCTTTAACGGTGGAAGAGATTAAGCAATTTTCCGCTACATCGTCCCCAAGGAAGTCTCCTTGTAAGAGTCCAGATGAGATGCCGATTATAGGAACAGTTGGGTCCTATTGGAATTCTAATGAGGGTTCTGGTTCACCTTCATCCTTTAAAGGAATTCCAAACACAACTAGCAAGTACAGAGAGGTAAAGACGAAGTGAATTTTTGTAGGTTAAATTTTCACTCATTAGTTTGATGGTGAATTCTTATTTGGATATTTAACTGGCTGTGCAGGATAAGAAGGTGAATTGGCATGCTACGCCATTTGAGACAAGGCTAGAGAAAGCATTGAATAGAGATGCTGCAGAAGCTGGTTCTACTTGTGTTCCTCATGCATTTTAG

Protein sequence

>MS.gene89565.t1

MGCFLGCFGSSKPKKHNRNNVLQRDANSSKPQQYNVPLVQDHSKTLHTPSLESPQSQDKTEQELGCCRDKIEEELSVTVRKKVTFDSNVKTYESVLPEEGGKEEALAGPNHSKSSSCEDSSSVTSNSTGSYPPNHRYQNCRDSDDEEEEVLDDWASDLSDDDEEEEDGIREEDDELGVEFEEDGMGYSKSRKVRDDVIDHVFTEEVESPMPTCERDVNSIGVNSNARDRSVYVHSVLNPVENMAQWKVVKAKRTPRSRPQKENFVSTNHDTEVSFRVKEISEAGTPKKLNQEIPVDASLSNWLGSSGTTTPVNKACLYAGGGIGTPDRSISQQGSNSVISLEDRPILGALTVEEIKQFSATSSPRKSPCKSPDEMPIIGTVGSYWNSNEGSGSPSSFKGIPNTTSKYREDKKVNWHATPFETRLEKALNRDAAEAGSTCVPHAF