AlfalfaGEDB | MS.gene97601

M. sativa cultivar XinJiangDaYe / MS.gene97601

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0008168 GO:0008171 GO:0016740 GO:0016741 GO:0046983
PFAM: PF00891.21 PF08100.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97601.t1	XP_003621331.1	95.1	367	18	0	1	367	1	367	5.00E-203	716.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97601.t1	P93324	61.6	367	132	3	8	367	8	372	1.4e-129	464.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97601.t1	G7L359	95.1	367	18	0	1	367	1	367	3.6e-203	716.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049611	MS.gene97601	0.820634	6.18E-53	-1.69E-46
MS.gene049634	MS.gene97601	0.801234	9.91E-49	-1.69E-46
MS.gene049710	MS.gene97601	0.800453	1.43E-48	-1.69E-46
MS.gene050082	MS.gene97601	0.81261	3.89E-51	-1.69E-46
MS.gene05015	MS.gene97601	0.818313	2.09E-52	-1.69E-46
MS.gene050381	MS.gene97601	0.809763	1.61E-50	-1.69E-46
MS.gene05079	MS.gene97601	0.800794	1.22E-48	-1.69E-46
MS.gene05104	MS.gene97601	0.807996	3.85E-50	-1.69E-46
MS.gene051044	MS.gene97601	0.833622	4.80E-56	-1.69E-46
MS.gene051127	MS.gene97601	0.800805	1.21E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97601.t1	MTR_7g011990	95.095	367	18	0	1	367	1	367	0.0	729
MS.gene97601.t1	MTR_7g011900	79.032	372	71	3	1	367	1	370	0.0	613
MS.gene97601.t1	MTR_7g012020	73.171	369	94	2	3	367	2	369	0.0	575
MS.gene97601.t1	MTR_7g012040	74.255	369	89	2	3	367	2	368	0.0	570
MS.gene97601.t1	MTR_7g012090	68.617	376	108	3	1	367	1	375	0.0	531
MS.gene97601.t1	MTR_7g012070	67.819	376	111	3	1	367	1	375	0.0	529
MS.gene97601.t1	MTR_2g055940	66.129	372	112	4	1	367	1	363	0.0	511
MS.gene97601.t1	MTR_1g096310	61.580	367	132	3	8	367	8	372	2.11e-168	474
MS.gene97601.t1	MTR_7g012020	74.182	275	66	2	3	273	2	275	1.31e-151	429
MS.gene97601.t1	MTR_7g012020	74.603	252	59	2	3	250	2	252	2.11e-138	394

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene97601.t1	AT5G54160	48.538	342	170	4	21	359	16	354	6.45e-112	331
MS.gene97601.t1	AT1G51990	37.396	361	216	5	13	366	4	361	2.71e-83	258
MS.gene97601.t1	AT1G77520	38.873	355	202	8	25	367	30	381	1.62e-82	256
MS.gene97601.t1	AT1G51990	37.119	361	217	5	13	366	4	361	3.43e-82	255
MS.gene97601.t1	AT1G33030	38.810	353	205	9	21	367	3	350	5.67e-78	244
MS.gene97601.t1	AT1G21100	41.144	367	189	11	5	357	11	364	1.53e-73	233
MS.gene97601.t1	AT1G63140	39.058	361	201	10	21	367	26	381	1.83e-73	233
MS.gene97601.t1	AT1G63140	39.058	361	201	10	21	367	46	401	2.88e-73	233
MS.gene97601.t1	AT1G21130	40.947	359	189	11	15	357	13	364	8.71e-73	231
MS.gene97601.t1	AT1G21110	40.872	367	190	11	5	357	11	364	3.29e-71	227

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Find 69 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCTTGAAATATACAA+AGG	0.617392	7.4:+87382805	MS.gene97601:CDS
AAATGGAAAGGTGATTCTTG+TGG	0.554848	7.4:+87384219	MS.gene97601:CDS
AAATTGATTCCCTTAATTGA+TGG	0.325335	7.4:-87382904	None:intergenic
AACAATGCTACCATCATTGT+TGG	0.462832	7.4:-87380197	None:intergenic
AACACTCTGATTTGCCGAAT+CGG	0.435933	7.4:+87380116	MS.gene97601:CDS
AACATACGGTCTAGCCGATT+CGG	0.437273	7.4:-87380130	None:intergenic
AACATGGCTCACTTTGTCAT+TGG	0.401446	7.4:-87379921	None:intergenic
AACTGCTGGAAACACCAAAT+TGG	0.362727	7.4:-87380005	None:intergenic
AATAGTGATCATGGTTATGT+TGG	0.549478	7.4:+87380268	MS.gene97601:CDS
AATATCATGTTCATTAATGC+TGG	0.556116	7.4:+87384304	MS.gene97601:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAAGGCAAGAGGAT+AGG	-	chr7.4:87381705-87381724	None:intergenic	30.0%
AAAGTATAGCTATATTCACG+AGG	-	chr7.4:87381139-87381158	None:intergenic	30.0%
AACCTAATAAAGCAAATGAG+CGG	-	chr7.4:87381225-87381244	None:intergenic	30.0%
AAGAGGTGACAATAGAATTA+TGG	-	chr7.4:87381415-87381434	None:intergenic	30.0%
AAGGTAAACAAAATTAGGCA+AGG	-	chr7.4:87380352-87380371	None:intergenic	30.0%
AATAGTGATCATGGTTATGT+TGG	+	chr7.4:87380268-87380287	MS.gene97601:CDS	30.0%
AATCATACGATGAAGAATCA+TGG	-	chr7.4:87382094-87382113	None:intergenic	30.0%
AATTTCCATCACTCCAATAA+TGG	-	chr7.4:87384416-87384435	None:intergenic	30.0%
ACCAAGTTTACATGGAAATT+AGG	-	chr7.4:87381840-87381859	None:intergenic	30.0%
AGGTTACCTTTGAATAATTG+TGG	-	chr7.4:87383319-87383338	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	87379908	87384444	87379908	ID=MS.gene97601
chr7.4	mRNA	87379908	87384444	87379908	ID=MS.gene97601.t1;Parent=MS.gene97601
chr7.4	exon	87379908	87380335	87379908	ID=MS.gene97601.t1.exon1;Parent=MS.gene97601.t1
chr7.4	CDS	87379908	87380335	87379908	ID=cds.MS.gene97601.t1;Parent=MS.gene97601.t1
chr7.4	exon	87382654	87382967	87382654	ID=MS.gene97601.t1.exon2;Parent=MS.gene97601.t1
chr7.4	CDS	87382654	87382967	87382654	ID=cds.MS.gene97601.t1;Parent=MS.gene97601.t1
chr7.4	exon	87383958	87384022	87383958	ID=MS.gene97601.t1.exon3;Parent=MS.gene97601.t1
chr7.4	CDS	87383958	87384022	87383958	ID=cds.MS.gene97601.t1;Parent=MS.gene97601.t1
chr7.4	exon	87384148	87384444	87384148	ID=MS.gene97601.t1.exon4;Parent=MS.gene97601.t1
chr7.4	CDS	87384148	87384444	87384148	ID=cds.MS.gene97601.t1;Parent=MS.gene97601.t1

Gene Sequence

>MS.gene97601

ATGAGTTCCTATTCCAATGACAAAGTGAGCCATGTTGTTGAAACTCACACACCACAAATAGATGACAACGAGACACTCTCAGCTATGGTACTAGGTGCCAATTTGGTGTTTCCAGCAGTTCTTAATGCTGCAATTCAACTCAACTTGTTTGAAATCATTGGTGATGGATTCATGTCAGCCATTGAAATTGCTTCAAAGTTACCAACTCAACACTCTGATTTGCCGAATCGGCTAGACCGTATGTTACGCTTGCTTGCAAGCTACTCTCTTCTGTCTATTTCTACTCGGACCAACAATGATGGTAGCATTGTTAGAGTTTTTGGGATCACACCTTCTGGTAAATACTTTTGCTATGATGAAAATAGTGATCATGGTTATGTTGGTTCGTTCACATCATTTATGTGTCACCCTGCTTTGATAGGGTTGTGGTAAGTGATTTTACCTTGCCTAATTTTGTTTACCTTGTTTAATTATTTATTTCATTTACAATCCAATGATTTTAGATTTTTGTAAAAAGTTACATGAATGATTTATAAAAATATAAACTTACAATTCAATGGTCAAATTTATAAAATATATATCGAGTAAAATGATATAAAATAAGTAACATTGATATAATATTACATCGATATAATTTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAGTGGGAAATGTGTTGCAGGAATTTCTTTAGCAATCATTATTTAAATATATCTCTTCTAGAAAAACGTCAAGTCAATATTGAGACCAAGCAAAATGTTATCAAACTATATATGCTATTATTTAAAAAAAAAAATTGTCAGTTACCCGACTCGTGCATGTATTATGCATTATCATTTATCAAGTGAGCTAAGCTCATGAGAACACTATTATTTTACACTTAAATATAACATTTTTAGTATTGTTTGACTACTTTTAATTACTTAATACAATTTATAACATCTAATTACTTTAAGTTAAACTAACACACCGAAATTGACAGCGGAAAAAATAAAACCAGAGGAGAGTTAATTACTCAATTAGTCGATACAATTATGTTCTATAATTAAAACTAGTGAGCTTAGTGAGCATAGCTCAGTTGATATGGACAATGCATAAAAATATGCAAGGTCTGGGGTTCAAAACCCAGCCACCAAAAAAAAAAAAAGACTGGTGTATACACATTTAAACTTTCTAGTTGAGTTTTTGCCTCGTGAATATAGCTATACTTTATACCTTTCTTATCCTTATTTATTAATTTTGTTACGTCTGCAGCAATTTAACCTAATTTTTTTCCGCTCATTTGCTTTATTAGGTTTGCAATTATTTAACCTAACAAATTACATCTAAAAAAATGCATTGCACCAATTTCATTCTAAGAAAATATTTTCTACACATATTTGATGCTGCATGTTTGTTCTAGAAATATGAGCATATCAATGATCACGTTTGATGCCTTCTATTTTATACTTTTTTTTTTTGCTACCATAATTCTATTGTCACCTCTTAAAAAAATTGTATTTTTCCTGATAAAAATTAGTATTACAGCGTCACTCAAGTCATTTATTTTATTTTATAAAATCAATGTATTTGTGTAGTGGACATGTACAATGTATAAACTTCCCTCAAAAAAATGTAGAATGTATCCTTATTTATTAATTTTGTTACGTCTGCAGCAATTTAACCTAATTTTTTCCTGCTCATTTGCTTTATTAAATTTGCAATTATTTAACCTAACAAATTCCATCTAAAAAATGCATCGCACCAATTTCATTCCTATCCTCTTGCCTTTTTTTTTTTGAAGAAAATATTTTCTACACTTATTTGATGTTGCACGTTTGTTCTAGAAACTATGAGCATATCAATGATCACGTTTGATGCCTTTTATTTTATACTTTTTTTTCGGCTACCCTAATTTCCATGTAAACTTGGTCATATATACCTAAATTATTGATAGGATTACCGAATTTTCTTTTATAATATTTTCAGATTTCATACATTTTATGAAGTGTTTTATTTTGTCTACTATGGATTATCACGTGTTATTTTTTCATCGTCACCTATTATATATTGCATTTTATTATTCGTATGTCAATCCCTTTACAATAAACCCGAGCGGAGCACGGGTGAAAAATCTAGTTAGTATTACATTTGACACTCTCATCCATGATTCTTCATCGTATGATTGAGGGCTCGTTTGTTACGGATTAAAATAAAAGTGATTTTGAAATAAAATAATTTAGAGATTATATTTTAGAGATTTTATGAAAATTCTGAATCAGTTTTGTGTTTGTTTGCGGTAATAAAAATTATTTTTTTTAAACAAATCATTTAGTTTGTTTGGATACAGCTATATAAAAGAGATTTTTTGTTACAAAATTAGTTCAATCTTTTAAACCATATTTTCTCTCTCATTTGAAGTTGTTTTTAGATTCTGATTATTTTAAAAAGCTGTAACAAACAGATGCAAAACTCTTAAAAGTGATTATTTAAAAAAAATGATTTTTTCCTTAAAAAAACTATAACAAACGGGCTCTAATTTTGTTTAGCGTAATCTCGATTATCTACATATAATTATGTAGTCAAGAATATTACTCTCAAATTTTCTACCAAAATTAACTAATAGGCTTTCCATTAATAGTTAAATTATCTTTCAAAAAAAATTAATAGTTAAATTATTACTTGAGATACACACTAATTAAAATCATTTTAATAATATATTTATAGGTTGAATTTCAAGGATGCAGTACTTGATCCAGAGATTGACCTATTCAAGAAAGTTAATGGAATAACTAAGTATGAGTACTTTGGGAAAGATCCACAAGTAAACCAAATATTCAACAAATCAATGACTAATATGACCAAAATTCACATGAAAAAAATCCTTGAAATATACAAAGGATATGAGGGAGTATCAACTTTGGTTGATATTGGAGGTGGAAATGGACAAACTCTCAAAATGATTATTGCAAAATATCCATCAATTAAGGGAATCAATTTTGACCTTCCTCAAGTGATTGAAAATGCATCACCCATTCCAGGTACTCTTTTTCTTGAAATTACTTGGTTTTATGGGAAGCAATTGATTAATTAATTTGATATCATCTAAAAGGCTAATTTATGTGAGTAAAAAAAAATAGTTTCAATTTGTAAAAATTGAGAAAATCCAATATTGATTTTTTTTTCTTCGGGAAATTTGAAAAAATAGGCAAATAGATAAATTTGCAAGTACTATCCACAAATTAATTTAATTTTTATGTAGTCAGATGAGGAAATTTATTTTTTTTTACTCAAGATGAATAAATTTATAAGTAGAGTAAAATTTAGTTCGTGGATATCACTTGCAAATTTACTTATATGACTAATTTTATTGGTTTTTGGTCAATTATCCACAATTATTCAAAGGTAACCTAGGTCTTACCTTAATTAATTTTTAAGTGAATTTGAAAAATTGGGCTAACTTTACCTTATAGATAGTTTTGGTACATCAAGTGTGATTAATAGTCCCGTATTAGTAAGGAAATTGAATATTGAAAGCCATTTAAGTGAAAAAAAAAAAGCCATTTTTGAAAAATTGAATATTGAAAGCCATTCAACTTACGTGTATGACTGTGTCCAAAAAAAAAAAAACTCACATGTATGATTGCTCAAAACTCAGTGTGACGATTCCCGAATATTTTAGGGCTCCCTTGATGACTAATATACTGTACCCATTTTTCATCTAGGATATCAAAGAACTCTCCTTATTATATGTGCTTGAAACTAGCTAAAATGATTAAATATTTAAATATTTCGTGTGAACTAAAATTAAATTTTACAAATTTTATAATATGAATCTGAAAAGGAAAGGGATGTGATATTTATTTTACTAAAATTAGTGAGGGTTTACCTTTGAAGCTTCTTTTGTGGTCCATACATATTAGAATGACATTCAAATCAAAGTTCAAACAACCCTTTGTATTAATGACCAGTTCAACAATTATTTTAACATTCCCAAGATTATTAATTGAAAATAGACAAATTTCATTTAGGGATTGAGCATGTTGGAGGAAGCATGTTTGAAAGTATTCCACAAGGAGATACCATAATGCTTAAGGTTGGTATCTACTCTCTGCGTTCCAAATTATATGTCATTCTAACAAAATTTGTTGATAAATATTATTGATTCTCAATAAAATAGTGCTTACTGGAGTATTTTGTATCCCTATTTCGTTGTTCTAGGCTGTATGTCATAATTGGTCGGATGAAAAATGCTTAGAAATTTTTAGCAATTGTTACAAAGCTTTGCCTCAAAATGGAAAGGTGATTCTTGTGGAGCTTGCACTACCAGAATGTCCAGAACCAACAAATGCATCCAGATTTGCTTCAATTATTGATAATATCATGTTCATTAATGCTGGTGGAAAAGAAAGAACTGCTAAAGAATATGAAATTTTGGCTCAACAATCTGGATTTTCAAGACTTGAAGTTGTTTGTTGTGCTTTCTCCATTATTGGAGTGATGGAAATTTATAAATAA

Protein sequence

>MS.gene97601.t1

MSSYSNDKVSHVVETHTPQIDDNETLSAMVLGANLVFPAVLNAAIQLNLFEIIGDGFMSAIEIASKLPTQHSDLPNRLDRMLRLLASYSLLSISTRTNNDGSIVRVFGITPSGKYFCYDENSDHGYVGSFTSFMCHPALIGLWLNFKDAVLDPEIDLFKKVNGITKYEYFGKDPQVNQIFNKSMTNMTKIHMKKILEIYKGYEGVSTLVDIGGGNGQTLKMIIAKYPSIKGINFDLPQVIENASPIPGIEHVGGSMFESIPQGDTIMLKAVCHNWSDEKCLEIFSNCYKALPQNGKVILVELALPECPEPTNASRFASIIDNIMFINAGGKERTAKEYEILAQQSGFSRLEVVCCAFSIIGVMEIYK