AlfalfaGEDB | MsG0180000356.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000356.01

KEGG: K04077
GO: GO:0005524
PFAM: PF00118

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000356.01.T01	AFI08589.1	90.196	102	4	1	67	162	25	126	1.31E-52	176

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000356.01.T01	P08927	97.778	90	2	0	73	162	66	155	2.07E-51	176

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000356.01.T01	I1U4L1	90.196	102	4	1	67	162	25	126	6.25e-53	176

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048801.01	MsG0180000356.01	0.835624	1.505291e-56	1.850943e-53
MsG0080048876.01	MsG0180000356.01	0.820126	8.088398e-53	6.345453e-50
MsG0080049040.01	MsG0180000356.01	0.803151	3.996276e-49	1.993519e-46
MsG0180000354.01	MsG0180000356.01	0.890954	6.174053e-74	5.305505e-70
MsG0180000356.01	MsG0180000989.01	0.809613	1.735383e-50	1.023728e-47
MsG0180000356.01	MsG0180001085.01	0.816521	5.298205e-52	3.762698e-49
MsG0180000356.01	MsG0180001609.01	0.845126	4.932838e-59	8.137813e-56
MsG0180000356.01	MsG0180003531.01	0.825826	3.792068e-54	3.494959e-51
MsG0180000356.01	MsG0180004428.01	0.807827	4.179041e-50	2.351293e-47
MsG0180000356.01	MsG0180004735.01	0.829740	4.345663e-55	4.487732e-52
MsG0180000356.01	MsG0180005064.01	0.820677	6.044056e-53	4.813874e-50
MsG0180000356.01	MsG0180006030.01	0.841102	5.824120e-58	8.467831e-55
MsG0180000356.01	MsG0180006136.01	0.826546	2.556176e-54	2.404531e-51
MsG0180000356.01	MsG0280007502.01	0.849111	3.987883e-60	7.481256e-57
MsG0180000356.01	MsG0280008081.01	0.811886	5.594366e-51	3.504059e-48
MsG0180000356.01	MsG0280008388.01	0.806790	6.933105e-50	3.797166e-47
MsG0180000356.01	MsG0280008394.01	0.805441	1.332834e-49	7.051917e-47
MsG0180000356.01	MsG0280008451.01	0.826506	2.613364e-54	2.455559e-51
MsG0180000356.01	MsG0280010187.01	0.800628	1.318278e-48	6.167945e-46
MsG0180000356.01	MsG0380014940.01	0.819163	1.341344e-52	1.024299e-49
MsG0180000356.01	MsG0380015399.01	0.811142	8.116416e-51	4.985028e-48
MsG0180000356.01	MsG0380015603.01	0.806051	9.925133e-50	5.334237e-47
MsG0180000356.01	MsG0380015742.01	0.806356	8.561538e-50	4.637094e-47
MsG0180000356.01	MsG0380015743.01	0.821336	4.263376e-53	3.458668e-50
MsG0180000356.01	MsG0380015902.01	0.803934	2.750291e-49	1.399914e-46
MsG0180000356.01	MsG0380016669.01	0.807205	5.663792e-50	3.135580e-47
MsG0180000356.01	MsG0380017017.01	0.800466	1.422714e-48	6.628937e-46
MsG0180000356.01	MsG0380017659.01	0.809909	1.498636e-50	8.909414e-48
MsG0180000356.01	MsG0380018061.01	0.806982	6.313888e-50	3.475278e-47
MsG0180000356.01	MsG0380018069.01	0.810110	1.356254e-50	8.105737e-48
MsG0180000356.01	MsG0480018577.01	0.817733	2.829932e-52	2.077669e-49
MsG0180000356.01	MsG0480018644.01	0.802536	5.355121e-49	2.629732e-46
MsG0180000356.01	MsG0480019957.01	0.804006	2.657705e-49	1.355211e-46
MsG0180000356.01	MsG0480020758.01	0.861396	1.057010e-63	2.986910e-60
MsG0180000356.01	MsG0480021803.01	0.848724	5.106780e-60	9.460037e-57
MsG0180000356.01	MsG0480022260.01	0.855510	6.010875e-62	1.390911e-58
MsG0180000356.01	MsG0480023367.01	0.821730	3.456121e-53	2.834924e-50
MsG0180000356.01	MsG0480023565.01	0.822977	1.774562e-53	1.508233e-50
MsG0180000356.01	MsG0480023703.01	0.814442	1.537728e-51	1.031924e-48
MsG0180000356.01	MsG0480023845.01	0.822973	1.778538e-53	1.511432e-50
MsG0180000356.01	MsG0580027394.01	0.818324	2.080667e-52	1.552563e-49
MsG0180000356.01	MsG0580028059.01	0.846788	1.742520e-59	3.033494e-56
MsG0180000356.01	MsG0580029605.01	0.812549	4.009732e-51	2.557015e-48
MsG0180000356.01	MsG0580029862.01	0.812616	3.875201e-51	2.475562e-48
MsG0180000356.01	MsG0680030516.01	0.803486	3.407563e-49	1.714496e-46
MsG0180000356.01	MsG0680030627.01	0.829239	5.753154e-55	5.854370e-52
MsG0180000356.01	MsG0680035731.01	0.858806	6.396711e-63	1.652993e-59
MsG0180000356.01	MsG0680035789.01	0.843572	1.290583e-58	2.027785e-55
MsG0180000356.01	MsG0680035791.01	0.804865	1.759620e-49	9.173832e-47
MsG0180000356.01	MsG0780036715.01	0.802793	4.739554e-49	2.342875e-46
MsG0180000356.01	MsG0780038616.01	0.821024	5.031080e-53	4.046594e-50
MsG0180000356.01	MsG0780039746.01	0.817497	3.197984e-52	2.332766e-49
MsG0180000356.01	MsG0780040251.01	0.839135	1.899421e-57	2.598534e-54
MsG0180000356.01	MsG0780040443.01	0.814682	1.360327e-51	9.187990e-49
MsG0180000356.01	MsG0780040484.01	0.803186	3.931222e-49	1.962787e-46
MsG0180000356.01	MsG0780041138.01	0.807314	5.368956e-50	2.980911e-47
MsG0180000356.01	MsG0880041946.01	0.835751	1.397864e-56	1.725548e-53
MsG0180000356.01	MsG0880043277.01	0.803733	3.028555e-49	1.533489e-46
MsG0180000356.01	MsG0880045101.01	0.805432	1.339030e-49	7.083009e-47
MsG0180000356.01	MsG0880045158.01	0.841014	6.140733e-58	8.904206e-55
MsG0180000356.01	MsG0880045710.01	0.811595	6.470419e-51	4.021728e-48
MsG0180000356.01	MsG0880046054.01	0.818653	1.751923e-52	1.319108e-49
MsG0180000356.01	MsG0880047234.01	0.801034	1.089451e-48	5.150307e-46
MsG0180000356.01	MsG0880047325.01	0.843604	1.264831e-58	1.989429e-55
MsG0180000356.01	MsG0880047670.01	0.809995	1.436346e-50	8.558580e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000356.01.T01	MTR_0991s0010	97.778	90	2	0	73	162	63	152	2.27e-56	175
MsG0180000356.01.T01	MTR_1g017380	90.196	102	4	1	67	162	51	152	3.52e-53	177
MsG0180000356.01.T01	MTR_1g017390	97.778	90	2	0	73	162	63	152	2.68e-52	175
MsG0180000356.01.T01	MTR_4g057970	58.947	95	38	1	66	160	56	149	1.93e-30	115
MsG0180000356.01.T01	MTR_4g084130	50.980	102	46	2	62	160	41	141	4.12e-28	109
MsG0180000356.01.T01	MTR_1g090140	57.471	87	37	0	75	161	50	136	4.89e-28	108
MsG0180000356.01.T01	MTR_1g090130	55.172	87	39	0	75	161	50	136	7.82e-27	105
MsG0180000356.01.T01	MTR_8g017080	48.276	87	45	0	75	161	51	137	1.60e-22	93.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000356.01.T01	AT5G56500	74.797	123	31	0	40	162	35	157	1.82e-51	173
MsG0180000356.01.T01	AT5G56500	74.797	123	31	0	40	162	35	157	1.82e-51	173
MsG0180000356.01.T01	AT3G13470	95.556	90	4	0	73	162	68	157	5.40e-51	172
MsG0180000356.01.T01	AT1G55490	66.434	143	28	2	26	162	33	161	5.82e-51	172
MsG0180000356.01.T01	AT1G55490	66.434	143	28	2	26	162	33	161	5.82e-51	172
MsG0180000356.01.T01	AT1G55490	66.434	143	28	2	26	162	33	161	5.82e-51	172
MsG0180000356.01.T01	AT1G55490	66.434	143	28	2	26	162	33	161	5.82e-51	172
MsG0180000356.01.T01	AT1G55490	66.434	143	28	2	26	162	33	161	5.82e-51	172
MsG0180000356.01.T01	AT1G26230	71.111	90	26	0	73	162	56	145	3.18e-39	138
MsG0180000356.01.T01	AT1G26230	71.111	90	26	0	73	162	56	145	6.63e-39	139
MsG0180000356.01.T01	AT1G26230	72.727	88	24	0	75	162	6	93	9.90e-39	138
MsG0180000356.01.T01	AT1G26230	71.111	90	26	0	73	162	56	145	1.05e-38	139
MsG0180000356.01.T01	AT1G26230	75.000	84	21	0	79	162	2	85	5.04e-38	136
MsG0180000356.01.T01	AT2G28000	57.895	95	39	1	66	160	55	148	3.24e-30	115
MsG0180000356.01.T01	AT3G23990	57.471	87	37	0	75	161	49	135	2.47e-28	110
MsG0180000356.01.T01	AT2G33210	55.172	87	39	0	75	161	50	136	1.94e-27	107
MsG0180000356.01.T01	AT2G33210	55.172	87	39	0	75	161	50	136	1.94e-27	107
MsG0180000356.01.T01	AT3G13860	54.545	88	40	0	74	161	48	135	6.48e-27	105
MsG0180000356.01.T01	AT5G18820	52.874	87	40	1	73	159	49	134	3.62e-24	97.8
MsG0180000356.01.T01	AT5G18820	52.874	87	40	1	73	159	49	134	1.09e-23	96.7

Find 40 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTACTACCTCTGTTGTTT+TGG	0.233024	1:-4834744	MsG0180000356.01.T01:CDS
TGAGAATATTGGTGCTAAAT+TGG	0.241648	1:-4834810	MsG0180000356.01.T01:CDS
TCTCTTCTTCAAACGATTCA+TGG	0.265428	1:+4837328	None:intergenic
ATCGTTTGAAGAAGAGAATA+TGG	0.305121	1:-4837322	MsG0180000356.01.T01:CDS
CCTCCCAAGATTTGCATATT+CGG	0.319340	1:+4837259	None:intergenic
TGTGAACAAGCTTGCGGATT+TGG	0.336342	1:-4835381	MsG0180000356.01.T01:CDS
ACACCATCATTAACAATCTT+AGG	0.351092	1:+4835299	None:intergenic
GTTGTTCTTGAGAGCAAGTA+TGG	0.388399	1:-4835326	MsG0180000356.01.T01:CDS
TGGTGTTACTCTTGGTCCTA+AGG	0.393067	1:-4835357	MsG0180000356.01.T01:CDS
TTGGACCATTGCAACTTGTA+TGG	0.402493	1:+4837051	None:intergenic
CCTGCCGAATATGCAAATCT+TGG	0.408256	1:-4837263	MsG0180000356.01.T01:CDS
AGCCGCCAAGACAAATGATT+TGG	0.408630	1:-4834777	MsG0180000356.01.T01:CDS
TTAGCACCAATATTCTCAAC+TGG	0.436766	1:+4834815	None:intergenic
GAGGATCCAGTTGAGAATAT+TGG	0.438153	1:-4834821	MsG0180000356.01.T01:CDS
TGGTGCTAAATTGGTTAGAC+AGG	0.448444	1:-4834801	MsG0180000356.01.T01:CDS
GCCTGCCAAATCATTTGTCT+TGG	0.460705	1:+4834772	None:intergenic
TCTTATTGCAGAAGGTGTTA+AGG	0.461521	1:-4834714	MsG0180000356.01.T01:CDS
GATTTGGTTGGTGTTACTCT+TGG	0.477460	1:-4835365	MsG0180000356.01.T01:CDS
ATTGCAACTTGTATGGATCT+AGG	0.486247	1:+4837058	None:intergenic
CCAAGATTTGCATATTCGGC+AGG	0.488534	1:+4837263	None:intergenic
ACTCTAAACACACACCTCTC+TGG	0.499764	1:+4835268	None:intergenic
TGCCAAATCATTTGTCTTGG+CGG	0.501395	1:+4834775	None:intergenic
GGTGTTACTCTTGGTCCTAA+GGG	0.507915	1:-4835356	MsG0180000356.01.T01:CDS
GCTCAGGGTCTTATTGCAGA+AGG	0.514992	1:-4834722	MsG0180000356.01.T01:CDS
ACAAATGATTTGGCAGGCGA+TGG	0.521838	1:-4834767	MsG0180000356.01.T01:CDS
TCTCCTAAGATTGTTAATGA+TGG	0.522934	1:-4835302	MsG0180000356.01.T01:CDS
CTGCCGAATATGCAAATCTT+GGG	0.524264	1:-4837262	MsG0180000356.01.T01:CDS
AAATCTTGGGAGGTTAAAGA+AGG	0.529068	1:-4837249	MsG0180000356.01.T01:CDS
GCCAAGACAAATGATTTGGC+AGG	0.531683	1:-4834773	MsG0180000356.01.T01:CDS
AGAACAACATTCCTTCCCTT+AGG	0.535555	1:+4835341	None:intergenic
TCGTTTGAAGAAGAGAATAT+GGG	0.539133	1:-4837321	MsG0180000356.01.T01:CDS
AACAAGCTTGCGGATTTGGT+TGG	0.576745	1:-4835377	MsG0180000356.01.T01:CDS
TTACTCTTGGTCCTAAGGGA+AGG	0.596314	1:-4835352	MsG0180000356.01.T01:CDS
TAGATCCATACAAGTTGCAA+TGG	0.614319	1:-4837056	MsG0180000356.01.T01:CDS
CCGAATATGCAAATCTTGGG+AGG	0.631971	1:-4837259	MsG0180000356.01.T01:CDS
CAAGTTGCAATGGTCCAACA+AGG	0.634794	1:-4837046	MsG0180000356.01.T01:CDS
GAATGGTGTGAACAAGCTTG+CGG	0.665076	1:-4835387	MsG0180000356.01.T01:CDS
TGGTGTCACTGTTGCCAGAG+AGG	0.672652	1:-4835282	MsG0180000356.01.T01:intron
ATGGTCCAACAAGGATAACG+AGG	0.727022	1:-4837037	MsG0180000356.01.T01:intron
ACCCTGAGCCAAAACAACAG+AGG	0.733850	1:+4834736	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAATGATATTAGAGAATT+TGG	+	Chr1:4836045-4836064	None:intergenic	15.0%
!!	CAAATTATAAAGAAAAGTTA+TGG	-	Chr1:4835054-4835073	MsG0180000356.01.T01:intron	15.0%
!!	TTAATAGAGTAGTATAAATA+GGG	-	Chr1:4835708-4835727	MsG0180000356.01.T01:intron	15.0%
!!	TTATCACATCTTATATTATT+TGG	+	Chr1:4834897-4834916	None:intergenic	15.0%
!!!	AATAGTCTTTTTGTTTTTTT+TGG	+	Chr1:4836214-4836233	None:intergenic	15.0%
!!!	GTTTTTTTTGGATAAAATTT+AGG	+	Chr1:4836202-4836221	None:intergenic	15.0%
!!!	TTCTTTATAATTTGTTCTAA+TGG	+	Chr1:4835048-4835067	None:intergenic	15.0%
!!!	TTTACTTGAATTATTGTTTT+AGG	-	Chr1:4836966-4836985	MsG0180000356.01.T01:intron	15.0%
!!!	TTTTAGTGAATTAATAATGT+GGG	-	Chr1:4837133-4837152	MsG0180000356.01.T01:intron	15.0%
!!!	TTTTTAGTGAATTAATAATG+TGG	-	Chr1:4837132-4837151	MsG0180000356.01.T01:intron	15.0%
!!	ACTTAATTGAATTCATTGAT+TGG	+	Chr1:4835222-4835241	None:intergenic	20.0%
!!	CTATTTATACTACTCTATTA+AGG	+	Chr1:4835709-4835728	None:intergenic	20.0%
!!	CTTAATAGAGTAGTATAAAT+AGG	-	Chr1:4835707-4835726	MsG0180000356.01.T01:intron	20.0%
!!	TAAATAACGTCATAATAACA+AGG	-	Chr1:4835567-4835586	MsG0180000356.01.T01:intron	20.0%
!!	TTTAGTGAATTAATAATGTG+GGG	-	Chr1:4837134-4837153	MsG0180000356.01.T01:intron	20.0%
!!!	ATGTTTTTGTTTGTTTTTGT+GGG	+	Chr1:4836169-4836188	None:intergenic	20.0%
!!!	ATGTTTTTTTTTTCCTGTAA+TGG	-	Chr1:4836067-4836086	MsG0180000356.01.T01:intron	20.0%
!!!	ATTTATTTTGTCTGAGTTTA+GGG	-	Chr1:4836935-4836954	MsG0180000356.01.T01:intron	20.0%
!!!	TATTTATTTTGTCTGAGTTT+AGG	-	Chr1:4836934-4836953	MsG0180000356.01.T01:intron	20.0%
!!!	TGTTTTTGAATTAGTTATGT+GGG	-	Chr1:4836980-4836999	MsG0180000356.01.T01:intron	20.0%
!!!	TTCACTTGAATTATTGTTTT+TGG	-	Chr1:4836788-4836807	MsG0180000356.01.T01:intron	20.0%
!!!	TTGTTTTTGAATTAGTTATG+TGG	-	Chr1:4836979-4836998	MsG0180000356.01.T01:intron	20.0%
!!!	TTTTAGTGAATTAGTTATGT+GGG	-	Chr1:4836865-4836884	MsG0180000356.01.T01:intron	20.0%
!!!	TTTTTAGTGAATTAGTTATG+TGG	-	Chr1:4836864-4836883	MsG0180000356.01.T01:intron	20.0%
!	ATATGATTGTTGTGACTTAT+AGG	-	Chr1:4835134-4835153	MsG0180000356.01.T01:intron	25.0%
!	CAATAACCAAAGAAAAACTA+TGG	-	Chr1:4834810-4834829	MsG0180000356.01.T01:CDS	25.0%
!	GACAATGCATAATATATGTA+TGG	+	Chr1:4836112-4836131	None:intergenic	25.0%
!	GCATAATATATGTATGGTTT+GGG	+	Chr1:4836106-4836125	None:intergenic	25.0%
!	TGCATAATATATGTATGGTT+TGG	+	Chr1:4836107-4836126	None:intergenic	25.0%
!	TGTTTACATTTGCGTTAAAA+AGG	-	Chr1:4837174-4837193	MsG0180000356.01.T01:intron	25.0%
!	TTTAGTGAATTAGTTATGTG+GGG	-	Chr1:4836866-4836885	MsG0180000356.01.T01:intron	25.0%
!!	ATGTTATTTATCATTCTCCA+TGG	+	Chr1:4835527-4835546	None:intergenic	25.0%
!!	GTTTTTGAATTAGTTATGTG+GGG	-	Chr1:4836981-4837000	MsG0180000356.01.T01:intron	25.0%
!!	TGTTATTTATCATTCTCCAT+GGG	+	Chr1:4835526-4835545	None:intergenic	25.0%
!!!	GATGTTTTTGTTTGTTTTTG+TGG	+	Chr1:4836170-4836189	None:intergenic	25.0%
!!!	TTTGTGTTTTTGTTACAGAA+TGG	-	Chr1:4836622-4836641	MsG0180000356.01.T01:intron	25.0%
!!!	TTTTAGGTGAATTAGTTATG+TGG	-	Chr1:4837055-4837074	MsG0180000356.01.T01:CDS	25.0%
	AAAACTCTATAACCTTCTCA+AGG	+	Chr1:4835792-4835811	None:intergenic	30.0%
	ACACCATCATTAACAATCTT+AGG	+	Chr1:4836730-4836749	None:intergenic	30.0%
	AGCACACAAAAAATCCAAAA+TGG	-	Chr1:4835385-4835404	MsG0180000356.01.T01:CDS	30.0%
	ATCGTTTGAAGAAGAGAATA+TGG	-	Chr1:4834704-4834723	MsG0180000356.01.T01:CDS	30.0%
	GAGTTGTATTTCAACAAAGA+TGG	-	Chr1:4836507-4836526	MsG0180000356.01.T01:intron	30.0%
	TAAGATATTGTCACACAGAA+TGG	+	Chr1:4835960-4835979	None:intergenic	30.0%
	TCACAACAATCATATTGACA+AGG	+	Chr1:4835129-4835148	None:intergenic	30.0%
	TCGTTTGAAGAAGAGAATAT+GGG	-	Chr1:4834705-4834724	MsG0180000356.01.T01:CDS	30.0%
	TCTCCTAAGATTGTTAATGA+TGG	-	Chr1:4836724-4836743	MsG0180000356.01.T01:intron	30.0%
	TGCATATAAATGTGATCGAA+AGG	-	Chr1:4835890-4835909	MsG0180000356.01.T01:intron	30.0%
	TGGTTACAATTGTTGTCTTA+AGG	-	Chr1:4835459-4835478	MsG0180000356.01.T01:intron	30.0%
	TTACATTTGCGTTAAAAAGG+TGG	-	Chr1:4837177-4837196	MsG0180000356.01.T01:intron	30.0%
	TTGCTTGTCACATTCATAAT+GGG	-	Chr1:4835100-4835119	MsG0180000356.01.T01:intron	30.0%
	TTTGTAACTAGAAGTTCAAG+TGG	+	Chr1:4835261-4835280	None:intergenic	30.0%
	TTTGTTGAAATACAACTCCT+TGG	+	Chr1:4836505-4836524	None:intergenic	30.0%
!	ACTTGAACTTCTAGTTACAA+AGG	-	Chr1:4835260-4835279	MsG0180000356.01.T01:intron	30.0%
!	GATAACAATTTTCCTTGAGA+AGG	-	Chr1:4835777-4835796	MsG0180000356.01.T01:intron	30.0%
!	GATAAGTTTTCTTTGTTGCT+CGG	+	Chr1:4836283-4836302	None:intergenic	30.0%
!	TATAGAGTTTTTCTACTGTG+AGG	-	Chr1:4835801-4835820	MsG0180000356.01.T01:intron	30.0%
!	TCTTAGCCATAGTTTTTCTT+TGG	+	Chr1:4834819-4834838	None:intergenic	30.0%
!	TTGAATTCATTGATTGGTAG+AGG	+	Chr1:4835216-4835235	None:intergenic	30.0%
!!	TGAGAATATTGGTGCTAAAT+TGG	-	Chr1:4837216-4837235	MsG0180000356.01.T01:CDS	30.0%
!!!	TTCGTTTTTTGAGCATGATT+GGG	+	Chr1:4836565-4836584	None:intergenic	30.0%
!!!	TTTCGTTTTTTGAGCATGAT+TGG	+	Chr1:4836566-4836585	None:intergenic	30.0%
!!!	TTTTTTTTCCTGTAATGGTC+TGG	-	Chr1:4836072-4836091	MsG0180000356.01.T01:intron	30.0%
	AAAATCCTTGACCCTAAACT+CGG	+	Chr1:4836831-4836850	None:intergenic	35.0%
	AAATCTTGGGAGGTTAAAGA+AGG	-	Chr1:4834777-4834796	MsG0180000356.01.T01:CDS	35.0%
	AGAAGATGGGAATGAAGAAA+TGG	+	Chr1:4836409-4836428	None:intergenic	35.0%
	AGGATGAAACTATTAGGTAG+GGG	+	Chr1:4836248-4836267	None:intergenic	35.0%
	ATGGTGTGATGTTATTCCTA+TGG	-	Chr1:4835073-4835092	MsG0180000356.01.T01:intron	35.0%
	ATTCAAATCCAGACCATTAC+AGG	+	Chr1:4836083-4836102	None:intergenic	35.0%
	ATTGCAACTTGTATGGATCT+AGG	+	Chr1:4834971-4834990	None:intergenic	35.0%
	ATTTATCATTCTCCATGGGT+TGG	+	Chr1:4835522-4835541	None:intergenic	35.0%
	CTTGCTTGTCACATTCATAA+TGG	-	Chr1:4835099-4835118	MsG0180000356.01.T01:intron	35.0%
	GAAAAACTATGGCTAAGACA+CGG	-	Chr1:4834821-4834840	MsG0180000356.01.T01:CDS	35.0%
	GAATGGAGGATGAAACTATT+AGG	+	Chr1:4836254-4836273	None:intergenic	35.0%
	GAGGATGAAACTATTAGGTA+GGG	+	Chr1:4836249-4836268	None:intergenic	35.0%
	GATTGTTGTGACTTATAGGA+TGG	-	Chr1:4835138-4835157	MsG0180000356.01.T01:intron	35.0%
	GGATGTGATGAAAATCAAGT+TGG	-	Chr1:4835188-4835207	MsG0180000356.01.T01:intron	35.0%
	GTTTAATTCGTCCGAGTTTA+GGG	-	Chr1:4836817-4836836	MsG0180000356.01.T01:intron	35.0%
	TAGATCCATACAAGTTGCAA+TGG	-	Chr1:4834970-4834989	MsG0180000356.01.T01:intron	35.0%
	TCTAGTGAGTTTAACTCAGT+TGG	+	Chr1:4836138-4836157	None:intergenic	35.0%
	TGTTTAATTCGTCCGAGTTT+AGG	-	Chr1:4836816-4836835	MsG0180000356.01.T01:intron	35.0%
	TTAGCACCAATATTCTCAAC+TGG	+	Chr1:4837214-4837233	None:intergenic	35.0%
	TTTCATCTTACGTCAAGTGT+TGG	-	Chr1:4835439-4835458	MsG0180000356.01.T01:intron	35.0%
!	ATTAGTTATGTGGGGTGTTT+AGG	-	Chr1:4836874-4836893	MsG0180000356.01.T01:intron	35.0%
!	TTAGTTATGTGGGGTGTTTA+GGG	-	Chr1:4836875-4836894	MsG0180000356.01.T01:intron	35.0%
!	TTTTACCTCGTTATCCTTGT+TGG	+	Chr1:4834997-4835016	None:intergenic	35.0%
!!	AACTACTACCTCTGTTGTTT+TGG	-	Chr1:4837282-4837301	MsG0180000356.01.T01:CDS	35.0%
!!	GGTTTAAGAGGATTTGGTTT+TGG	+	Chr1:4836305-4836324	None:intergenic	35.0%
!!	GTTTTGATGTTGGGTGTTTA+GGG	-	Chr1:4837085-4837104	MsG0180000356.01.T01:CDS	35.0%
!!	TCTTATTGCAGAAGGTGTTA+AGG	-	Chr1:4837312-4837331	MsG0180000356.01.T01:CDS	35.0%
!!!	GGAGTGTTTGTTTTGATGTT+GGG	-	Chr1:4837076-4837095	MsG0180000356.01.T01:CDS	35.0%
!!!	TGGAGTGTTTGTTTTGATGT+TGG	-	Chr1:4837075-4837094	MsG0180000356.01.T01:CDS	35.0%
!!!	TGTTTTGATGTTGGGTGTTT+AGG	-	Chr1:4837084-4837103	MsG0180000356.01.T01:CDS	35.0%
	AGAACAACATTCCTTCCCTT+AGG	+	Chr1:4836688-4836707	None:intergenic	40.0%
	AGGGAATTGAGAGAAAATGG+TGG	+	Chr1:4836332-4836351	None:intergenic	40.0%
	ATTGAGAGAAAATGGTGGCT+AGG	+	Chr1:4836327-4836346	None:intergenic	40.0%
	CCTCCCAAGATTTGCATATT+CGG	+	Chr1:4834770-4834789	None:intergenic	40.0%
	CTGCCGAATATGCAAATCTT+GGG	-	Chr1:4834764-4834783	MsG0180000356.01.T01:CDS	40.0%
	GAGGATCCAGTTGAGAATAT+TGG	-	Chr1:4837205-4837224	MsG0180000356.01.T01:intron	40.0%
	GGAGGATGAAACTATTAGGT+AGG	+	Chr1:4836250-4836269	None:intergenic	40.0%
	GTTGTTCTTGAGAGCAAGTA+TGG	-	Chr1:4836700-4836719	MsG0180000356.01.T01:intron	40.0%
	TCCAGTTCCTAAGTCATCTT+GGG	-	Chr1:4835320-4835339	MsG0180000356.01.T01:CDS	40.0%
	TGCAGGGAATTGAGAGAAAA+TGG	+	Chr1:4836335-4836354	None:intergenic	40.0%
	TGCCAAATCATTTGTCTTGG+CGG	+	Chr1:4837254-4837273	None:intergenic	40.0%
	TGTGACAAGCAAGTATCCAT+AGG	+	Chr1:4835092-4835111	None:intergenic	40.0%
	TTGAGAGAAAATGGTGGCTA+GGG	+	Chr1:4836326-4836345	None:intergenic	40.0%
	TTGCGTTAAAAAGGTGGAGT+TGG	-	Chr1:4837183-4837202	MsG0180000356.01.T01:intron	40.0%
	TTGGACCATTGCAACTTGTA+TGG	+	Chr1:4834978-4834997	None:intergenic	40.0%
	TTGTTGCTCGGAATTGAGAA+TGG	+	Chr1:4836271-4836290	None:intergenic	40.0%
!	CATGTCTTCGACAACCATTT+TGG	+	Chr1:4835402-4835421	None:intergenic	40.0%
!	GCTGAGTCTAAAGTATTCCA+AGG	+	Chr1:4835368-4835387	None:intergenic	40.0%
!	GGCGGTACAATTTTTATCCT+TGG	-	Chr1:4835348-4835367	MsG0180000356.01.T01:CDS	40.0%
!	GGGCTCGTCAAAAAATGTTT+TGG	-	Chr1:4835728-4835747	MsG0180000356.01.T01:intron	40.0%
!	TGGTGCTAAATTGGTTAGAC+AGG	-	Chr1:4837225-4837244	MsG0180000356.01.T01:CDS	40.0%
!!	GATTTGGTTGGTGTTACTCT+TGG	-	Chr1:4836661-4836680	MsG0180000356.01.T01:intron	40.0%
	AAGTCATCTTGGGAAGATGG+CGG	-	Chr1:4835330-4835349	MsG0180000356.01.T01:CDS	45.0%
	AATGGTGGCTAGGGTTTAAG+AGG	+	Chr1:4836317-4836336	None:intergenic	45.0%
	ACTCTAAACACACACCTCTC+TGG	+	Chr1:4836761-4836780	None:intergenic	45.0%
	AGCCGCCAAGACAAATGATT+TGG	-	Chr1:4837249-4837268	MsG0180000356.01.T01:CDS	45.0%
	ATGGTCCAACAAGGATAACG+AGG	-	Chr1:4834989-4835008	MsG0180000356.01.T01:intron	45.0%
	CAACACCTACACTTTCGTGA+AGG	-	Chr1:4835167-4835186	MsG0180000356.01.T01:intron	45.0%
	CAAGTTGCAATGGTCCAACA+AGG	-	Chr1:4834980-4834999	MsG0180000356.01.T01:intron	45.0%
	CACCTGGAGTTTCTTGATAG+CGG	+	Chr1:4836535-4836554	None:intergenic	45.0%
	CCAAGATTTGCATATTCGGC+AGG	+	Chr1:4834766-4834785	None:intergenic	45.0%
	CCATCTTCCCAAGATGACTT+AGG	+	Chr1:4835330-4835349	None:intergenic	45.0%
	CCGAATATGCAAATCTTGGG+AGG	-	Chr1:4834767-4834786	MsG0180000356.01.T01:CDS	45.0%
	CCTAAGTCATCTTGGGAAGA+TGG	-	Chr1:4835327-4835346	MsG0180000356.01.T01:CDS	45.0%
	CCTGCCGAATATGCAAATCT+TGG	-	Chr1:4834763-4834782	MsG0180000356.01.T01:CDS	45.0%
	CGTTAAAAAGGTGGAGTTGG+AGG	-	Chr1:4837186-4837205	MsG0180000356.01.T01:intron	45.0%
	GAAATACAACTCCTTGGCCA+TGG	+	Chr1:4836499-4836518	None:intergenic	45.0%
	GAATGGTGTGAACAAGCTTG+CGG	-	Chr1:4836639-4836658	MsG0180000356.01.T01:intron	45.0%
	GCCTGCCAAATCATTTGTCT+TGG	+	Chr1:4837257-4837276	None:intergenic	45.0%
	GCTATCAAGAAACTCCAGGT+GGG	-	Chr1:4836534-4836553	MsG0180000356.01.T01:intron	45.0%
	GGCTAGGGTTTAAGAGGATT+TGG	+	Chr1:4836311-4836330	None:intergenic	45.0%
	GTCCAGTTCCTAAGTCATCT+TGG	-	Chr1:4835319-4835338	MsG0180000356.01.T01:CDS	45.0%
	TCCCAAGATGACTTAGGAAC+TGG	+	Chr1:4835324-4835343	None:intergenic	45.0%
	TGGGAATGAAGAAATGGCAG+CGG	+	Chr1:4836403-4836422	None:intergenic	45.0%
	TGTGAACAAGCTTGCGGATT+TGG	-	Chr1:4836645-4836664	MsG0180000356.01.T01:intron	45.0%
	TTACTCTTGGTCCTAAGGGA+AGG	-	Chr1:4836674-4836693	MsG0180000356.01.T01:intron	45.0%
	TTCCGCTATCAAGAAACTCC+AGG	-	Chr1:4836530-4836549	MsG0180000356.01.T01:intron	45.0%
	TTGCTCGGAATTGAGAATGG+AGG	+	Chr1:4836268-4836287	None:intergenic	45.0%
!	AACAAGCTTGCGGATTTGGT+TGG	-	Chr1:4836649-4836668	MsG0180000356.01.T01:intron	45.0%
!	ACAAATGATTTGGCAGGCGA+TGG	-	Chr1:4837259-4837278	MsG0180000356.01.T01:CDS	45.0%
!	CACATCCTTCACGAAAGTGT+AGG	+	Chr1:4835175-4835194	None:intergenic	45.0%
!	CTTCACGAAAGTGTAGGTGT+TGG	+	Chr1:4835169-4835188	None:intergenic	45.0%
!	GCCAAGACAAATGATTTGGC+AGG	-	Chr1:4837253-4837272	MsG0180000356.01.T01:CDS	45.0%
!	TGTGGGGTTTTGCTTTGATG+CGG	-	Chr1:4836997-4837016	MsG0180000356.01.T01:intron	45.0%
!!	GGTGTTACTCTTGGTCCTAA+GGG	-	Chr1:4836670-4836689	MsG0180000356.01.T01:intron	45.0%
!!	TGGTGTTACTCTTGGTCCTA+AGG	-	Chr1:4836669-4836688	MsG0180000356.01.T01:intron	45.0%
!!!	ACCTCTGTTGTTTTGGCTCA+GGG	-	Chr1:4837289-4837308	MsG0180000356.01.T01:CDS	45.0%
!!!	TACCTCTGTTGTTTTGGCTC+AGG	-	Chr1:4837288-4837307	MsG0180000356.01.T01:CDS	45.0%
!!!	TTTCTTTTTATTTATATTTA+TGG	+	Chr1:4835988-4836007	None:intergenic	5.0%
	AAGAGAGGTTGCATGAGGAG+AGG	+	Chr1:4836375-4836394	None:intergenic	50.0%
	ACCCTGAGCCAAAACAACAG+AGG	+	Chr1:4837293-4837312	None:intergenic	50.0%
	ATGATTGGGAAGAACCCACC+TGG	+	Chr1:4836551-4836570	None:intergenic	50.0%
	CGCTATCAAGAAACTCCAGG+TGG	-	Chr1:4836533-4836552	MsG0180000356.01.T01:intron	50.0%
	CTCTCAATTCCCTGCAACCA+TGG	-	Chr1:4836339-4836358	MsG0180000356.01.T01:intron	50.0%
	GAGAGAAGAGAGGTTGCATG+AGG	+	Chr1:4836380-4836399	None:intergenic	50.0%
	GATGACTTAGGAACTGGACG+AGG	+	Chr1:4835318-4835337	None:intergenic	50.0%
	GGGAATGAAGAAATGGCAGC+GGG	+	Chr1:4836402-4836421	None:intergenic	50.0%
	TAAAGTCTCAGCCATGGCCA+AGG	-	Chr1:4836485-4836504	MsG0180000356.01.T01:intron	50.0%
	TCGCTCTCACCAGGAAGAAT+CGG	-	Chr1:4836457-4836476	MsG0180000356.01.T01:intron	50.0%
	TGCATGATGCCATGGTTGCA+GGG	+	Chr1:4836351-4836370	None:intergenic	50.0%
	TGCTGCACTTCGCAAGACAT+GGG	-	Chr1:4834857-4834876	MsG0180000356.01.T01:intron	50.0%
	TGGCCATGGCTGAGACTTTA+GGG	+	Chr1:4836485-4836504	None:intergenic	50.0%
	TTGCATGATGCCATGGTTGC+AGG	+	Chr1:4836352-4836371	None:intergenic	50.0%
	TTGCTGCACTTCGCAAGACA+TGG	-	Chr1:4834856-4834875	MsG0180000356.01.T01:intron	50.0%
	TTGGCCATGGCTGAGACTTT+AGG	+	Chr1:4836486-4836505	None:intergenic	50.0%
!	CGTTGCTGGTGGTTTTTCTG+CGG	+	Chr1:4836437-4836456	None:intergenic	50.0%
!	GTTGCTGGTGGTTTTTCTGC+GGG	+	Chr1:4836436-4836455	None:intergenic	50.0%
!	TTCGTCCGAGTTTAGGGTCA+AGG	-	Chr1:4836823-4836842	MsG0180000356.01.T01:intron	50.0%
!	TTTAGGGCTCCGATTCTTCC+TGG	+	Chr1:4836469-4836488	None:intergenic	50.0%
!!	GCTCAGGGTCTTATTGCAGA+AGG	-	Chr1:4837304-4837323	MsG0180000356.01.T01:CDS	50.0%
	CACGAGTGTCTTCCAACCCA+TGG	-	Chr1:4835507-4835526	MsG0180000356.01.T01:intron	55.0%
	GAGCCCTAAAGTCTCAGCCA+TGG	-	Chr1:4836479-4836498	MsG0180000356.01.T01:intron	55.0%
	GGAGAGGTTGCATGATGCCA+TGG	+	Chr1:4836359-4836378	None:intergenic	55.0%
	TTCTGCGGGCGGAAGAAGAT+GGG	+	Chr1:4836422-4836441	None:intergenic	55.0%
	TTTCTGCGGGCGGAAGAAGA+TGG	+	Chr1:4836423-4836442	None:intergenic	55.0%
!	GCGAAGTGCAGCAAGTGTTG+AGG	+	Chr1:4834850-4834869	None:intergenic	55.0%
!!	TGGTGTCACTGTTGCCAGAG+AGG	-	Chr1:4836744-4836763	MsG0180000356.01.T01:intron	55.0%
	ATGGCAGCGGGAGAGAAGAG+AGG	+	Chr1:4836390-4836409	None:intergenic	60.0%
!	GCTGGTGGTTTTTCTGCGGG+CGG	+	Chr1:4836433-4836452	None:intergenic	60.0%
	CCAGCAACGTCGCTCTCACC+AGG	-	Chr1:4836448-4836467	MsG0180000356.01.T01:intron	65.0%
	CCTGGTGAGAGCGACGTTGC+TGG	+	Chr1:4836451-4836470	None:intergenic	65.0%
	GGTGAGAGCGACGTTGCTGG+TGG	+	Chr1:4836448-4836467	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	4834700	4837348	4834700	ID=MsG0180000356.01;Name=MsG0180000356.01
Chr1	mRNA	4834700	4837348	4834700	ID=MsG0180000356.01.T01;Parent=MsG0180000356.01;Name=MsG0180000356.01.T01;_AED=0.60;_eAED=0.64;_QI=0\|0.33\|0.25\|1\|1\|1\|4\|0\|165
Chr1	exon	4837206	4837348	4837206	ID=MsG0180000356.01.T01:exon:5273;Parent=MsG0180000356.01.T01
Chr1	exon	4837038	4837113	4837038	ID=MsG0180000356.01.T01:exon:5274;Parent=MsG0180000356.01.T01
Chr1	exon	4835283	4835408	4835283	ID=MsG0180000356.01.T01:exon:5275;Parent=MsG0180000356.01.T01
Chr1	exon	4834700	4834852	4834700	ID=MsG0180000356.01.T01:exon:5276;Parent=MsG0180000356.01.T01
Chr1	CDS	4837206	4837348	4837206	ID=MsG0180000356.01.T01:cds;Parent=MsG0180000356.01.T01
Chr1	CDS	4837038	4837113	4837038	ID=MsG0180000356.01.T01:cds;Parent=MsG0180000356.01.T01
Chr1	CDS	4835283	4835408	4835283	ID=MsG0180000356.01.T01:cds;Parent=MsG0180000356.01.T01
Chr1	CDS	4834700	4834852	4834700	ID=MsG0180000356.01.T01:cds;Parent=MsG0180000356.01.T01

Gene Sequence

>MsG0180000356.01.T01

ATGAATCGTTTGAAGAAGAGAATATGGGAGAATGACAAACTAATATACGACGAAGAATATCTTCCTGCCGAATATGCAAATCTTGGGAGGTTAAAGAAGGTTGCAAACAACAATAACCAAAGAAAAACTATGGCTAAGACACGAGCAGAAAAGTTAAAATTCTTAATGATTGAGCACCTAGATCCATACAAGTTGCAATGGTCCAACAAGGATAACGAGAATGGTGTGAACAAGCTTGCGGATTTGGTTGGTGTTACTCTTGGTCCTAAGGGAAGGAATGTTGTTCTTGAGAGCAAGTATGGTTCTCCTAAGATTGTTAATGATGGTGTCACTGTTGCCAGAGAGGTGGAGTTGGAGGATCCAGTTGAGAATATTGGTGCTAAATTGGTTAGACAGGCAGCCGCCAAGACAAATGATTTGGCAGGCGATGGAACTACTACCTCTGTTGTTTTGGCTCAGGGTCTTATTGCAGAAGGTGTTAAGGTAGACTTGTTATGA

Protein sequence

>MsG0180000356.01.T01

MNRLKKRIWENDKLIYDEEYLPAEYANLGRLKKVANNNNQRKTMAKTRAEKLKFLMIEHLDPYKLQWSNKDNENGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVDLL*