AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030627.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030627.01.T01 MTR_6g007887 81.081 148 9 2 31 159 31 178 4.38e-60 185
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030627.01.T01 AT5G14910 42.623 183 76 6 1 163 1 174 1.06e-32 115
MsG0680030627.01.T01 AT5G14910 42.623 183 76 6 1 163 1 174 1.06e-32 115

Find 40 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCTTTAATCAGGAAAATT+TGG 0.159312 6:-6371999 None:intergenic
TACTCTCACCATGCTCTTTC+AGG 0.186580 6:+6368577 MsG0680030627.01.T01:CDS
GTAGAAACCATACAAGGTTT+AGG 0.262884 6:+6371856 MsG0680030627.01.T01:CDS
ACTTTGTATAGGCCTGATTA+AGG 0.290609 6:+6372027 MsG0680030627.01.T01:three_prime_UTR
AAAATTGTGGCAATTGGTTT+TGG 0.326078 6:-6368252 None:intergenic
TGTTTCATCTTCAACTGCTT+TGG 0.327503 6:-6368453 None:intergenic
AGAGTATCAGATGGAGAAAT+AGG 0.349041 6:-6368560 None:intergenic
ATTAATTCATACCCTTAATC+AGG 0.349579 6:-6372039 None:intergenic
TAGAAACCATACAAGGTTTA+GGG 0.352194 6:+6371857 MsG0680030627.01.T01:CDS
AAGCCTACTGCACTTTGTAT+AGG 0.363217 6:+6372016 MsG0680030627.01.T01:three_prime_UTR
TGAGGGACTCGCAACTTTAG+AGG 0.364918 6:+6370867 MsG0680030627.01.T01:CDS
TTTGAACCCTAAACCTTGTA+TGG 0.367059 6:-6371863 None:intergenic
TTTGAAGGTTAATGTATTTG+AGG 0.412702 6:+6370849 MsG0680030627.01.T01:CDS
TTGAAGGTTAATGTATTTGA+GGG 0.430100 6:+6370850 MsG0680030627.01.T01:CDS
TACAGGAGTGGCTTCTAGTC+TGG 0.436605 6:+6371834 MsG0680030627.01.T01:CDS
TGATTGAAAATTGTGGCAAT+TGG 0.440887 6:-6368258 None:intergenic
AAGTGCAGTAGGCTTTAATC+AGG 0.447682 6:-6372008 None:intergenic
CTTTGTATAGGCCTGATTAA+GGG 0.464318 6:+6372028 MsG0680030627.01.T01:three_prime_UTR
TGTTGATAAAACTTTGGATA+GGG 0.467540 6:+6368196 MsG0680030627.01.T01:five_prime_UTR
GAAGAAGTAGAAGATGAAGA+AGG 0.473631 6:-6368344 None:intergenic
TTGTTGATAAAACTTTGGAT+AGG 0.477074 6:+6368195 MsG0680030627.01.T01:five_prime_UTR
TTAATCAGGAAAATTTGGAC+AGG 0.501117 6:-6371994 None:intergenic
AAGAAGTAGAAGATGAAGAA+GGG 0.513038 6:-6368343 None:intergenic
TTCATGCCACTCTCGCATGA+AGG 0.521160 6:+6368391 MsG0680030627.01.T01:CDS
GGAGAAATAGGAACAACAAC+AGG 0.526893 6:-6368548 None:intergenic
CAGACAACAATTCAAGCTAC+AGG 0.545265 6:+6371817 MsG0680030627.01.T01:CDS
ATCTTACAAATTTGTACCAG+TGG 0.548193 6:-6368153 None:intergenic
GTTGCCTAGACTAAATCTGC+TGG 0.584216 6:+6371931 MsG0680030627.01.T01:exon
AGCATGGTGAGAGTATCAGA+TGG 0.591718 6:-6368569 None:intergenic
TACACCAGCAGATTTAGTCT+AGG 0.594029 6:-6371935 None:intergenic
AGAGTGCCTTCATGCGAGAG+TGG 0.612644 6:-6368397 None:intergenic
AGGCCTATACAAAGTGCAGT+AGG 0.612753 6:-6372019 None:intergenic
CTTTGGTCACAAATAAACAA+CGG 0.624612 6:-6368436 None:intergenic
AGTCTGGTAGAAACCATACA+AGG 0.626902 6:+6371850 MsG0680030627.01.T01:CDS
GCAACAAACATCAGTAACCT+CGG 0.649971 6:+6368517 MsG0680030627.01.T01:CDS
AGATGAAGATGAAAGTAGTG+TGG 0.655193 6:-6368288 None:intergenic
GAAATAGGAACAACAACAGG+TGG 0.659550 6:-6368545 None:intergenic
AACAATTCAAGCTACAGGAG+TGG 0.666112 6:+6371822 MsG0680030627.01.T01:CDS
GTGTTATACCTGAAAGAGCA+TGG 0.678714 6:-6368585 None:intergenic
AACAACAGGTGGTTGCTCCG+AGG 0.710522 6:-6368534 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAATTATATGTCA+TGG - Chr6:6370805-6370824 None:intergenic 10.0%
!! ATTCTGAATTATAAAAAATT+CGG - Chr6:6370473-6370492 None:intergenic 10.0%
!!! AAAAATCAAATTTTTTCAAA+TGG - Chr6:6368675-6368694 None:intergenic 10.0%
!!! AAAAATCAAATTTTTTCATA+TGG - Chr6:6368798-6368817 None:intergenic 10.0%
!!! AAAATCAAATTTTTTCAAAT+GGG - Chr6:6368674-6368693 None:intergenic 10.0%
!!! AAAATCAAATTTTTTCATAT+GGG - Chr6:6368797-6368816 None:intergenic 10.0%
!!! ACATATAATTTTTATTTTGT+AGG + Chr6:6370807-6370826 MsG0680030627.01.T01:intron 10.0%
!! AGTAATAAAATGCATATTTA+AGG + Chr6:6369439-6369458 MsG0680030627.01.T01:intron 15.0%
!! CGATTCTTATTATAATTTAA+AGG + Chr6:6370535-6370554 MsG0680030627.01.T01:intron 15.0%
!! GTAATAAAATGCATATTTAA+GGG + Chr6:6369440-6369459 MsG0680030627.01.T01:intron 15.0%
!! TTCTAATAAAATTGGAAATT+TGG + Chr6:6371279-6371298 MsG0680030627.01.T01:intron 15.0%
!!! AATTTCTTTTTTGTATTAGA+AGG + Chr6:6372059-6372078 MsG0680030627.01.T01:three_prime_UTR 15.0%
!!! AGTTTTTTTTTTCTTGAAAT+TGG + Chr6:6368873-6368892 MsG0680030627.01.T01:intron 15.0%
!!! ATTTCTTTTTTGTATTAGAA+GGG + Chr6:6372060-6372079 MsG0680030627.01.T01:three_prime_UTR 15.0%
!!! ATTTTGTTCTGATTTTTTTA+TGG + Chr6:6370395-6370414 MsG0680030627.01.T01:intron 15.0%
!!! CAATTTTCTTCTAATAAAAT+TGG + Chr6:6371271-6371290 MsG0680030627.01.T01:intron 15.0%
!!! GTTTTTTTTTTCTTGAAATT+GGG + Chr6:6368874-6368893 MsG0680030627.01.T01:intron 15.0%
!!! TGCTTAGTTTTAAAAATAAA+GGG - Chr6:6371124-6371143 None:intergenic 15.0%
!!! TTGCTTAGTTTTAAAAATAA+AGG - Chr6:6371125-6371144 None:intergenic 15.0%
!!! TTTTTTTTTTCTTGAAATTG+GGG + Chr6:6368875-6368894 MsG0680030627.01.T01:intron 15.0%
!! AAAATATGAATATTCTGAGT+GGG + Chr6:6371443-6371462 MsG0680030627.01.T01:intron 20.0%
!! AAGAATGATTCTTAATAACT+AGG + Chr6:6371022-6371041 MsG0680030627.01.T01:intron 20.0%
!! ATCAAACAAAGAACAAAAAT+TGG - Chr6:6368836-6368855 None:intergenic 20.0%
!! ATCTTAAAAGTTGTATTGTA+GGG + Chr6:6369802-6369821 MsG0680030627.01.T01:intron 20.0%
!! GATAAAATAATGAGAATTGA+GGG - Chr6:6371180-6371199 None:intergenic 20.0%
!! TGATTATTTCAATCACATTA+CGG - Chr6:6371003-6371022 None:intergenic 20.0%
!! TTTATTACTCAAATTATCCT+GGG - Chr6:6369428-6369447 None:intergenic 20.0%
!!! AAAATCACAAATTTTCACAT+TGG - Chr6:6368766-6368785 None:intergenic 20.0%
!!! ATAAATGGACATTTTTTTTG+AGG + Chr6:6369658-6369677 MsG0680030627.01.T01:intron 20.0%
!!! ATTAGAAGAAAATTGATAGT+AGG - Chr6:6371266-6371285 None:intergenic 20.0%
!!! GCTTAGTTTTAAAAATAAAG+GGG - Chr6:6371123-6371142 None:intergenic 20.0%
!!! GTTAAGCTTTTTATTATACA+AGG + Chr6:6371683-6371702 MsG0680030627.01.T01:intron 20.0%
!!! TCATTTTCTGAAAATATTAC+CGG - Chr6:6369127-6369146 None:intergenic 20.0%
!!! TTCTTTTGTTGATAAAACTT+TGG + Chr6:6368190-6368209 MsG0680030627.01.T01:five_prime_UTR 20.0%
!!! TTTTATTACTCAAATTATCC+TGG - Chr6:6369429-6369448 None:intergenic 20.0%
!!! TTTTTTTTTCTTGAAATTGG+GGG + Chr6:6368876-6368895 MsG0680030627.01.T01:intron 20.0%
! AAGATAGAAATCTTGAGATT+TGG + Chr6:6371344-6371363 MsG0680030627.01.T01:intron 25.0%
! ATCACAAACTCTCAATTATT+TGG - Chr6:6371202-6371221 None:intergenic 25.0%
! ATGACCAACAAATTATTTCA+CGG - Chr6:6370681-6370700 None:intergenic 25.0%
! ATTAATTCATACCCTTAATC+AGG - Chr6:6372042-6372061 None:intergenic 25.0%
! ATTTAAGTGATTCAAGTGTA+TGG - Chr6:6370067-6370086 None:intergenic 25.0%
! CAAAATATGAATATTCTGAG+TGG + Chr6:6371442-6371461 MsG0680030627.01.T01:intron 25.0%
! CATCTTAAAAGTTGTATTGT+AGG + Chr6:6369801-6369820 MsG0680030627.01.T01:intron 25.0%
! GAAATAAAACACTTTCAAGA+AGG - Chr6:6369711-6369730 None:intergenic 25.0%
! GGATAAAATAATGAGAATTG+AGG - Chr6:6371181-6371200 None:intergenic 25.0%
! TATGGAGAATCTAAGAATTT+GGG - Chr6:6370049-6370068 None:intergenic 25.0%
! TCTGTTAGAAGATAGTTATT+AGG - Chr6:6371602-6371621 None:intergenic 25.0%
! TTAGCATAAACATTATGCAA+TGG + Chr6:6371755-6371774 MsG0680030627.01.T01:intron 25.0%
! TTGAAGGTTAATGTATTTGA+GGG + Chr6:6370850-6370869 MsG0680030627.01.T01:CDS 25.0%
! TTTGAAGGTTAATGTATTTG+AGG + Chr6:6370849-6370868 MsG0680030627.01.T01:CDS 25.0%
!! AATTCCGTGAAATAATTTGT+TGG + Chr6:6370674-6370693 MsG0680030627.01.T01:intron 25.0%
!! AGTCTATTTTCAATGTTTGA+AGG + Chr6:6370238-6370257 MsG0680030627.01.T01:intron 25.0%
!! ATTTGGACTATCTACAATTT+TGG + Chr6:6371070-6371089 MsG0680030627.01.T01:intron 25.0%
!! CCACAATTTTCAATCAAAAA+TGG + Chr6:6368265-6368284 MsG0680030627.01.T01:exon 25.0%
!! TGTTGATAAAACTTTGGATA+GGG + Chr6:6368196-6368215 MsG0680030627.01.T01:five_prime_UTR 25.0%
!! TTGTTGATAAAACTTTGGAT+AGG + Chr6:6368195-6368214 MsG0680030627.01.T01:five_prime_UTR 25.0%
!! TTTAAGATTGATGAAGGTTA+TGG + Chr6:6369006-6369025 MsG0680030627.01.T01:intron 25.0%
!!! AAAAAACCAACTTTTTCACA+TGG - Chr6:6368737-6368756 None:intergenic 25.0%
!!! AAAAACCAACTTTTTCACAT+GGG - Chr6:6368736-6368755 None:intergenic 25.0%
!!! AAAATGGAACTTTTTTCACA+TGG - Chr6:6368705-6368724 None:intergenic 25.0%
!!! AATACAACTTTTAAGATGAG+GGG - Chr6:6369799-6369818 None:intergenic 25.0%
!!! ACAATACAACTTTTAAGATG+AGG - Chr6:6369801-6369820 None:intergenic 25.0%
!!! AGAGTTTGATTTTCATCATA+TGG - Chr6:6370924-6370943 None:intergenic 25.0%
!!! ATTAGGATTAGTTGTACTTT+TGG - Chr6:6371585-6371604 None:intergenic 25.0%
!!! CAATACAACTTTTAAGATGA+GGG - Chr6:6369800-6369819 None:intergenic 25.0%
!!! CCATTTTTGATTGAAAATTG+TGG - Chr6:6368268-6368287 None:intergenic 25.0%
!!! CTTCTTTTGTTGTTCTTTTT+TGG + Chr6:6370713-6370732 MsG0680030627.01.T01:intron 25.0%
!!! GATGATTTTAAGATTGATGA+AGG + Chr6:6369000-6369019 MsG0680030627.01.T01:intron 25.0%
!!! GTTCTTTTTTGGTTTGTTAT+TGG + Chr6:6370724-6370743 MsG0680030627.01.T01:intron 25.0%
!!! TTCTGATTTTTTTATGGACA+TGG + Chr6:6370401-6370420 MsG0680030627.01.T01:intron 25.0%
AAAATCCCATGTGAAAAAGT+TGG + Chr6:6368728-6368747 MsG0680030627.01.T01:intron 30.0%
AAACAATCATCGAAAACCAA+TGG - Chr6:6370951-6370970 None:intergenic 30.0%
AAATCAAACTCTTAAGCCAT+TGG + Chr6:6370932-6370951 MsG0680030627.01.T01:intron 30.0%
AAATTCTTAGATGGTATGAG+AGG + Chr6:6369843-6369862 MsG0680030627.01.T01:intron 30.0%
AAGAAGTAGAAGATGAAGAA+GGG - Chr6:6368346-6368365 None:intergenic 30.0%
ACATTATATAGGATATGGCA+TGG + Chr6:6369745-6369764 MsG0680030627.01.T01:intron 30.0%
ACATTGAAGTAAGTGAACAA+GGG - Chr6:6370349-6370368 None:intergenic 30.0%
ACCTTAAAATTGCATGCTTA+AGG + Chr6:6370097-6370116 MsG0680030627.01.T01:intron 30.0%
AGATATGACACTTACACATA+GGG + Chr6:6369100-6369119 MsG0680030627.01.T01:intron 30.0%
ATGACATGAAATTAGGATAG+TGG + Chr6:6368915-6368934 MsG0680030627.01.T01:intron 30.0%
ATGCCATATCCTATATAATG+TGG - Chr6:6369746-6369765 None:intergenic 30.0%
ATTAGTGAGAATAACAGTGT+AGG - Chr6:6369593-6369612 None:intergenic 30.0%
ATTTGCACATTGTAAAGTCT+AGG - Chr6:6370188-6370207 None:intergenic 30.0%
CATTATATAGGATATGGCAT+GGG + Chr6:6369746-6369765 MsG0680030627.01.T01:intron 30.0%
CCTTAAAATTGCATGCTTAA+GGG + Chr6:6370098-6370117 MsG0680030627.01.T01:intron 30.0%
CTCATACCATCTAAGAATTT+GGG - Chr6:6369843-6369862 None:intergenic 30.0%
CTGAAACTGTGTTTATAAGT+GGG + Chr6:6369979-6369998 MsG0680030627.01.T01:intron 30.0%
CTTTGGTCACAAATAAACAA+CGG - Chr6:6368439-6368458 None:intergenic 30.0%
GAACTTAGACAAATCAGTTA+GGG + Chr6:6369286-6369305 MsG0680030627.01.T01:intron 30.0%
GAGAATTATACTGTCTTAGA+AGG + Chr6:6369334-6369353 MsG0680030627.01.T01:intron 30.0%
GGAAATTTGGTAAGATTTGA+AGG + Chr6:6371292-6371311 MsG0680030627.01.T01:intron 30.0%
GGTCATTATGACATGAAATT+AGG + Chr6:6368908-6368927 MsG0680030627.01.T01:intron 30.0%
GTATGGAGAATCTAAGAATT+TGG - Chr6:6370050-6370069 None:intergenic 30.0%
TAGAAACCATACAAGGTTTA+GGG + Chr6:6371857-6371876 MsG0680030627.01.T01:CDS 30.0%
TAGATATGACACTTACACAT+AGG + Chr6:6369099-6369118 MsG0680030627.01.T01:intron 30.0%
TAGCATCATCACTGAATTAA+AGG - Chr6:6370434-6370453 None:intergenic 30.0%
TCTCATACCATCTAAGAATT+TGG - Chr6:6369844-6369863 None:intergenic 30.0%
TGAACTTAGACAAATCAGTT+AGG + Chr6:6369285-6369304 MsG0680030627.01.T01:intron 30.0%
TGATTGAAAATTGTGGCAAT+TGG - Chr6:6368261-6368280 None:intergenic 30.0%
TGCCATATCCTATATAATGT+GGG - Chr6:6369745-6369764 None:intergenic 30.0%
TGTAGATAGTCCAAATTTGT+GGG - Chr6:6371066-6371085 None:intergenic 30.0%
TTAATCAGGAAAATTTGGAC+AGG - Chr6:6371997-6372016 None:intergenic 30.0%
TTCTGTCTTATATAATCCTG+AGG + Chr6:6370588-6370607 MsG0680030627.01.T01:intron 30.0%
TTGTAGATAGTCCAAATTTG+TGG - Chr6:6371067-6371086 None:intergenic 30.0%
TTTAAGCGAGATAAAAGTGA+TGG + Chr6:6371484-6371503 MsG0680030627.01.T01:intron 30.0%
! AAATTAGGATAGTGGTGAAA+TGG + Chr6:6368923-6368942 MsG0680030627.01.T01:intron 30.0%
! AATTAGGATAGTGGTGAAAT+GGG + Chr6:6368924-6368943 MsG0680030627.01.T01:intron 30.0%
! AGGCTTTAATCAGGAAAATT+TGG - Chr6:6372002-6372021 None:intergenic 30.0%
! ATTGATAATAGGCAAGTGTT+AGG - Chr6:6370779-6370798 None:intergenic 30.0%
! CACATGGGATTTTCAAAAAA+TGG - Chr6:6368721-6368740 None:intergenic 30.0%
! CATGGGAATTTGTTTATAAG+TGG + Chr6:6369763-6369782 MsG0680030627.01.T01:intron 30.0%
! CTTTTCTTATCCCACAAATT+TGG + Chr6:6371053-6371072 MsG0680030627.01.T01:intron 30.0%
! GAATTTGTTTATAAGTGGAG+TGG + Chr6:6369768-6369787 MsG0680030627.01.T01:intron 30.0%
! GTTTTCGATGATTGTTTACA+AGG + Chr6:6370954-6370973 MsG0680030627.01.T01:intron 30.0%
! TAAAACAGCTATTGTTGTTG+TGG - Chr6:6370630-6370649 None:intergenic 30.0%
! TTAATTCAGTGATGATGCTA+GGG + Chr6:6370434-6370453 MsG0680030627.01.T01:intron 30.0%
! TTGATAATAGGCAAGTGTTA+GGG - Chr6:6370778-6370797 None:intergenic 30.0%
! TTTAATTCAGTGATGATGCT+AGG + Chr6:6370433-6370452 MsG0680030627.01.T01:intron 30.0%
! TTTTGTAGAATGTGAGACTA+GGG + Chr6:6371317-6371336 MsG0680030627.01.T01:intron 30.0%
! TTTTTGTAGAATGTGAGACT+AGG + Chr6:6371316-6371335 MsG0680030627.01.T01:intron 30.0%
!! AAAATTGTGGCAATTGGTTT+TGG - Chr6:6368255-6368274 None:intergenic 30.0%
!! AGAGGGTGTTAAAAATTTGA+AGG + Chr6:6370834-6370853 MsG0680030627.01.T01:CDS 30.0%
!! GATGTGTGTAGCTTTATAAA+TGG + Chr6:6369643-6369662 MsG0680030627.01.T01:intron 30.0%
!!! GTGATTTTTTATGCTTTGGT+TGG + Chr6:6371379-6371398 MsG0680030627.01.T01:intron 30.0%
!!! TCGAGTGATTTTTTATGCTT+TGG + Chr6:6371375-6371394 MsG0680030627.01.T01:intron 30.0%
!!! TTTATTTTGTAGGAGACAGA+GGG + Chr6:6370817-6370836 MsG0680030627.01.T01:intron 30.0%
!!! TTTTATTTTGTAGGAGACAG+AGG + Chr6:6370816-6370835 MsG0680030627.01.T01:intron 30.0%
AAACTGTGTTTATAAGTGGG+AGG + Chr6:6369982-6370001 MsG0680030627.01.T01:intron 35.0%
AAAGCTACACACATCTACAT+TGG - Chr6:6369638-6369657 None:intergenic 35.0%
ACTCTCAATTATGTGCCTAA+AGG - Chr6:6369517-6369536 None:intergenic 35.0%
ACTTAGAGTAAATAATGCCC+AGG + Chr6:6369408-6369427 MsG0680030627.01.T01:intron 35.0%
ACTTTCAAGAAGGATACTAG+TGG - Chr6:6369701-6369720 None:intergenic 35.0%
ACTTTGTATAGGCCTGATTA+AGG + Chr6:6372027-6372046 MsG0680030627.01.T01:three_prime_UTR 35.0%
AGAATCAGTCGTATACATCT+TGG + Chr6:6370488-6370507 MsG0680030627.01.T01:intron 35.0%
AGAGGTTATTCAAGATTCGT+TGG + Chr6:6369861-6369880 MsG0680030627.01.T01:intron 35.0%
AGATGAAGATGAAAGTAGTG+TGG - Chr6:6368291-6368310 None:intergenic 35.0%
CAACCTACTCTATATCCTTT+AGG + Chr6:6369499-6369518 MsG0680030627.01.T01:intron 35.0%
CACATTGAAGTAAGTGAACA+AGG - Chr6:6370350-6370369 None:intergenic 35.0%
CATTGAAGTAAGTGAACAAG+GGG - Chr6:6370348-6370367 None:intergenic 35.0%
CTTTCAAGAAGGATACTAGT+GGG - Chr6:6369700-6369719 None:intergenic 35.0%
CTTTGTATAGGCCTGATTAA+GGG + Chr6:6372028-6372047 MsG0680030627.01.T01:three_prime_UTR 35.0%
GAAGAAGTAGAAGATGAAGA+AGG - Chr6:6368347-6368366 None:intergenic 35.0%
GAGGTTATTCAAGATTCGTT+GGG + Chr6:6369862-6369881 MsG0680030627.01.T01:intron 35.0%
GCTGAAACTGTGTTTATAAG+TGG + Chr6:6369978-6369997 MsG0680030627.01.T01:intron 35.0%
GTAGAAACCATACAAGGTTT+AGG + Chr6:6371856-6371875 MsG0680030627.01.T01:CDS 35.0%
GTCCCACATTATATAGGATA+TGG + Chr6:6369740-6369759 MsG0680030627.01.T01:intron 35.0%
TCCTACTATCATGAGTCTAT+GGG + Chr6:6369561-6369580 MsG0680030627.01.T01:intron 35.0%
TGGTATATTTGAAGATCGTG+TGG + Chr6:6370744-6370763 MsG0680030627.01.T01:intron 35.0%
TGTTTCATCTTCAACTGCTT+TGG - Chr6:6368456-6368475 None:intergenic 35.0%
TTGTGCTTATTATGCTCAGT+TGG + Chr6:6371789-6371808 MsG0680030627.01.T01:intron 35.0%
TTTCAATGTTTGAAGGCAGA+GGG + Chr6:6370245-6370264 MsG0680030627.01.T01:intron 35.0%
TTTGAACCCTAAACCTTGTA+TGG - Chr6:6371866-6371885 None:intergenic 35.0%
TTTGTTTATAAGTGGAGTGG+AGG + Chr6:6369771-6369790 MsG0680030627.01.T01:intron 35.0%
! AGAGTATCAGATGGAGAAAT+AGG - Chr6:6368563-6368582 None:intergenic 35.0%
! CCCTTAAGCATGCAATTTTA+AGG - Chr6:6370101-6370120 None:intergenic 35.0%
! GACAGGCTAATCATTCTTTT+AGG - Chr6:6371980-6371999 None:intergenic 35.0%
! TGGCATGAAAAAGTGCAAAA+TGG - Chr6:6368380-6368399 None:intergenic 35.0%
! TTTTCAATGTTTGAAGGCAG+AGG + Chr6:6370244-6370263 MsG0680030627.01.T01:intron 35.0%
!! TGAAATTGGGGGTACTAAAT+TGG + Chr6:6368887-6368906 MsG0680030627.01.T01:intron 35.0%
!! TGTCATGGAGCATTGATAAT+AGG - Chr6:6370790-6370809 None:intergenic 35.0%
!!! TTTGGTTGGTGAGTTTTGAA+TGG + Chr6:6371393-6371412 MsG0680030627.01.T01:intron 35.0%
AACAATTCAAGCTACAGGAG+TGG + Chr6:6371822-6371841 MsG0680030627.01.T01:CDS 40.0%
AAGCCTACTGCACTTTGTAT+AGG + Chr6:6372016-6372035 MsG0680030627.01.T01:three_prime_UTR 40.0%
AAGGTGCACACTAGAATCAA+TGG - Chr6:6368610-6368629 None:intergenic 40.0%
ACATTCTAGATTTCCAGTCC+TGG + Chr6:6369910-6369929 MsG0680030627.01.T01:intron 40.0%
ACTCATGATAGTAGGACGTT+AGG - Chr6:6369557-6369576 None:intergenic 40.0%
AGTCTGGTAGAAACCATACA+AGG + Chr6:6371850-6371869 MsG0680030627.01.T01:CDS 40.0%
CACACATCTACATTGGAACA+TGG - Chr6:6369631-6369650 None:intergenic 40.0%
CAGACAACAATTCAAGCTAC+AGG + Chr6:6371817-6371836 MsG0680030627.01.T01:CDS 40.0%
CATTCTAGATTTCCAGTCCT+GGG + Chr6:6369911-6369930 MsG0680030627.01.T01:intron 40.0%
CTCATGATAGTAGGACGTTA+GGG - Chr6:6369556-6369575 None:intergenic 40.0%
CTCGTAAGTATGCAGTTCAT+TGG + Chr6:6369376-6369395 MsG0680030627.01.T01:intron 40.0%
CTGAGAGTCCCACATTATAT+AGG + Chr6:6369734-6369753 MsG0680030627.01.T01:intron 40.0%
GAAATAGGAACAACAACAGG+TGG - Chr6:6368548-6368567 None:intergenic 40.0%
GCAACAAACATCAGTAACCT+CGG + Chr6:6368517-6368536 MsG0680030627.01.T01:CDS 40.0%
GCTCAACCCAAATTCTTAGA+TGG + Chr6:6369834-6369853 MsG0680030627.01.T01:intron 40.0%
GGAGAAATAGGAACAACAAC+AGG - Chr6:6368551-6368570 None:intergenic 40.0%
GTCCTACTATCATGAGTCTA+TGG + Chr6:6369560-6369579 MsG0680030627.01.T01:intron 40.0%
GTGCCTAAAGGATATAGAGT+AGG - Chr6:6369505-6369524 None:intergenic 40.0%
GTGTTATACCTGAAAGAGCA+TGG - Chr6:6368588-6368607 None:intergenic 40.0%
TACACCAGCAGATTTAGTCT+AGG - Chr6:6371938-6371957 None:intergenic 40.0%
TATCATGAGTCTATGGGACA+AGG + Chr6:6369567-6369586 MsG0680030627.01.T01:intron 40.0%
TCCCATAGACTCATGATAGT+AGG - Chr6:6369565-6369584 None:intergenic 40.0%
TGATTGAATGTAACCCGTGT+TGG + Chr6:6369150-6369169 MsG0680030627.01.T01:intron 40.0%
TTGTATTGTAGGGTCGAGTT+AGG + Chr6:6369812-6369831 MsG0680030627.01.T01:intron 40.0%
TTGTGTTGAGAGTCTCTCAT+TGG + Chr6:6369944-6369963 MsG0680030627.01.T01:intron 40.0%
! AAATCTAGAATGTGACCAGG+TGG - Chr6:6369903-6369922 None:intergenic 40.0%
! AAGTGCAGTAGGCTTTAATC+AGG - Chr6:6372011-6372030 None:intergenic 40.0%
! ACCTTTGACCAAAGCTTTAG+AGG + Chr6:6370292-6370311 MsG0680030627.01.T01:intron 40.0%
! AGCGAGATAAAAGTGATGGA+AGG + Chr6:6371488-6371507 MsG0680030627.01.T01:intron 40.0%
! CAGTGTTACCTAGCTCTTAA+TGG + Chr6:6369225-6369244 MsG0680030627.01.T01:intron 40.0%
! GGTTACACTGGTTGAAGATA+TGG + Chr6:6368945-6368964 MsG0680030627.01.T01:intron 40.0%
! TACACTGGTTGAAGATATGG+TGG + Chr6:6368948-6368967 MsG0680030627.01.T01:intron 40.0%
! TCTAAAGCTTTGGTCAAAGG+TGG - Chr6:6370293-6370312 None:intergenic 40.0%
! TGGAAATCTAGAATGTGACC+AGG - Chr6:6369906-6369925 None:intergenic 40.0%
!! ACCTCTAAAGCTTTGGTCAA+AGG - Chr6:6370296-6370315 None:intergenic 40.0%
!! AGATATGGTGGTGGTTATTG+TGG + Chr6:6368960-6368979 MsG0680030627.01.T01:intron 40.0%
!! TAGAGCTACCTCTAAAGCTT+TGG - Chr6:6370303-6370322 None:intergenic 40.0%
!! TCACAAGAGCATTGCAGAAA+AGG - Chr6:6368629-6368648 None:intergenic 40.0%
!!! GCAATTGGTTTTGGTTTGGT+AGG - Chr6:6368246-6368265 None:intergenic 40.0%
!!! TGTGGCAATTGGTTTTGGTT+TGG - Chr6:6368250-6368269 None:intergenic 40.0%
AACAAGTGCTCATGAGCTCT+TGG + Chr6:6371706-6371725 MsG0680030627.01.T01:intron 45.0%
AACCTGCACCATTAAGAGCT+AGG - Chr6:6369236-6369255 None:intergenic 45.0%
ACAGAGAAATACTCTGCCTC+AGG - Chr6:6370607-6370626 None:intergenic 45.0%
ACTGGTTGAAGATATGGTGG+TGG + Chr6:6368951-6368970 MsG0680030627.01.T01:intron 45.0%
AGGCCTATACAAAGTGCAGT+AGG - Chr6:6372022-6372041 None:intergenic 45.0%
ATCTGCTCTGGCCACTATAA+TGG + Chr6:6371546-6371565 MsG0680030627.01.T01:intron 45.0%
GTCTCATAGTCAATCTGCTC+TGG + Chr6:6371534-6371553 MsG0680030627.01.T01:intron 45.0%
GTTGCCTAGACTAAATCTGC+TGG + Chr6:6371931-6371950 MsG0680030627.01.T01:exon 45.0%
TACTCTCACCATGCTCTTTC+AGG + Chr6:6368577-6368596 MsG0680030627.01.T01:CDS 45.0%
TATAATGTGGGACTCTCAGC+AGG - Chr6:6369733-6369752 None:intergenic 45.0%
TGACACTTACACATAGGGAC+CGG + Chr6:6369105-6369124 MsG0680030627.01.T01:intron 45.0%
TGACCAGGTGGTTTGACATT+GGG - Chr6:6369891-6369910 None:intergenic 45.0%
TGTCCAACACTCACACATGT+CGG + Chr6:6369173-6369192 MsG0680030627.01.T01:intron 45.0%
! TACCTAGCTCTTAATGGTGC+AGG + Chr6:6369231-6369250 MsG0680030627.01.T01:intron 45.0%
!! AGCATGGTGAGAGTATCAGA+TGG - Chr6:6368572-6368591 None:intergenic 45.0%
!! AGTGGTGAAATGGGTTACAC+TGG + Chr6:6368933-6368952 MsG0680030627.01.T01:intron 45.0%
ACTATAATGGTGCGGCGTTG+CGG + Chr6:6371559-6371578 MsG0680030627.01.T01:intron 50.0%
CCAACCGAACCGTACAAAAC+CGG - Chr6:6370020-6370039 None:intergenic 50.0%
CTCTGGCCACTATAATGGTG+CGG + Chr6:6371551-6371570 MsG0680030627.01.T01:intron 50.0%
GCTCTTAATGGTGCAGGTTG+TGG + Chr6:6369237-6369256 MsG0680030627.01.T01:intron 50.0%
GTGACCAGGTGGTTTGACAT+TGG - Chr6:6369892-6369911 None:intergenic 50.0%
TACAGGAGTGGCTTCTAGTC+TGG + Chr6:6371834-6371853 MsG0680030627.01.T01:CDS 50.0%
TCACCCAATGTCAAACCACC+TGG + Chr6:6369885-6369904 MsG0680030627.01.T01:intron 50.0%
TGAGGGACTCGCAACTTTAG+AGG + Chr6:6370867-6370886 MsG0680030627.01.T01:CDS 50.0%
TGTCCGACATGTGTGAGTGT+TGG - Chr6:6369179-6369198 None:intergenic 50.0%
TTCATGCCACTCTCGCATGA+AGG + Chr6:6368391-6368410 MsG0680030627.01.T01:CDS 50.0%
!! GTGAGTGTTGGACACCAACA+CGG - Chr6:6369167-6369186 None:intergenic 50.0%
!! TGAGTGTTGGACACCAACAC+GGG - Chr6:6369166-6369185 None:intergenic 50.0%
!!! CGGTTTTGTACGGTTCGGTT+GGG + Chr6:6370018-6370037 MsG0680030627.01.T01:intron 50.0%
AACAACAGGTGGTTGCTCCG+AGG - Chr6:6368537-6368556 None:intergenic 55.0%
ATTTCCAGTCCTGGGCGTGA+GGG + Chr6:6369919-6369938 MsG0680030627.01.T01:intron 55.0%
GCAACGCCGCACCATTATAG+TGG - Chr6:6371560-6371579 None:intergenic 55.0%
GGTGCAGGTTGTGGATGTGT+AGG + Chr6:6369246-6369265 MsG0680030627.01.T01:intron 55.0%
! AGAGTGCCTTCATGCGAGAG+TGG - Chr6:6368400-6368419 None:intergenic 55.0%
!!! CCGGTTTTGTACGGTTCGGT+TGG + Chr6:6370017-6370036 MsG0680030627.01.T01:intron 55.0%
!!! GCTGCCGGTTTTGTACGGTT+CGG + Chr6:6370013-6370032 MsG0680030627.01.T01:intron 55.0%
AACACAAACCCCTCACGCCC+AGG - Chr6:6369931-6369950 None:intergenic 60.0%
ACCGTACAAAACCGGCAGCG+AGG - Chr6:6370012-6370031 None:intergenic 60.0%
CCGTACAAAACCGGCAGCGA+GGG - Chr6:6370011-6370030 None:intergenic 60.0%
GATTTCCAGTCCTGGGCGTG+AGG + Chr6:6369918-6369937 MsG0680030627.01.T01:intron 60.0%
TTTCCAGTCCTGGGCGTGAG+GGG + Chr6:6369920-6369939 MsG0680030627.01.T01:intron 60.0%
!!! CCCTCGCTGCCGGTTTTGTA+CGG + Chr6:6370008-6370027 MsG0680030627.01.T01:intron 60.0%
AAACCCCTCACGCCCAGGAC+TGG - Chr6:6369926-6369945 None:intergenic 65.0%
!! TGGGAGGCATCCCTCGCTGC+CGG + Chr6:6369998-6370017 MsG0680030627.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 6368155 6372149 6368155 ID=MsG0680030627.01;Name=MsG0680030627.01
Chr6 mRNA 6368155 6372149 6368155 ID=MsG0680030627.01.T01;Parent=MsG0680030627.01;Name=MsG0680030627.01.T01;_AED=0.40;_eAED=0.40;_QI=129|0.66|1|1|0.66|0.5|4|189|168
Chr6 exon 6368155 6368598 6368155 ID=MsG0680030627.01.T01:exon:6162;Parent=MsG0680030627.01.T01
Chr6 exon 6370829 6370888 6370829 ID=MsG0680030627.01.T01:exon:6163;Parent=MsG0680030627.01.T01
Chr6 exon 6371808 6372084 6371808 ID=MsG0680030627.01.T01:exon:6164;Parent=MsG0680030627.01.T01
Chr6 exon 6372106 6372149 6372106 ID=MsG0680030627.01.T01:exon:6165;Parent=MsG0680030627.01.T01
Chr6 five_prime_UTR 6368155 6368283 6368155 ID=MsG0680030627.01.T01:five_prime_utr;Parent=MsG0680030627.01.T01
Chr6 CDS 6368284 6368598 6368284 ID=MsG0680030627.01.T01:cds;Parent=MsG0680030627.01.T01
Chr6 CDS 6370829 6370888 6370829 ID=MsG0680030627.01.T01:cds;Parent=MsG0680030627.01.T01
Chr6 CDS 6371808 6371939 6371808 ID=MsG0680030627.01.T01:cds;Parent=MsG0680030627.01.T01
Chr6 three_prime_UTR 6371940 6372084 6371940 ID=MsG0680030627.01.T01:three_prime_utr;Parent=MsG0680030627.01.T01
Chr6 three_prime_UTR 6372106 6372149 6372106 ID=MsG0680030627.01.T01:three_prime_utr;Parent=MsG0680030627.01.T01
Gene Sequence

>MsG0680030627.01.T01

ATGGCCACACTACTTTCATCTTCATCTCTTCACTCAATTCGTCTTTCTTCTTCTACAATCCCTTCTTCATCTTCTACTTCTTCTCATTCTCTTCCATTTTGCACTTTTTCATGCCACTCTCGCATGAAGGCACTCTCAATCAAGAAGAAAAACCGTTGTTTATTTGTGACCAAAGCAGTTGAAGATGAAACACAGCAAGAACAAGAACAAGCTGTTACTGATGTTGAACAACAGCAACAAACATCAGTAACCTCGGAGCAACCACCTGTTGTTGTTCCTATTTCTCCATCTGATACTCTCACCATGCTCTTTCAGGAGACAGAGGGTGTTAAAAATTTGAAGGTTAATGTATTTGAGGGACTCGCAACTTTAGAGTTGGAAAAGCAGACAACAATTCAAGCTACAGGAGTGGCTTCTAGTCTGGTAGAAACCATACAAGGTTTAGGGTTCAAATTACAGACATTAAATCTCAGTTTTGATGATGAAGATGTTGCAGCAGTTGCCTAG

Protein sequence

>MsG0680030627.01.T01

MATLLSSSSLHSIRLSSSTIPSSSSTSSHSLPFCTFSCHSRMKALSIKKKNRCLFVTKAVEDETQQEQEQAVTDVEQQQQTSVTSEQPPVVVPISPSDTLTMLFQETEGVKNLKVNVFEGLATLELEKQTTIQATGVASSLVETIQGLGFKLQTLNLSFDDEDVAAVA*