AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006136.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006136.01.T01 MTR_1g115235 87.821 312 22 3 1 302 1 306 2.02e-177 492
MsG0180006136.01.T01 MTR_1g115235 87.000 300 23 3 1 290 1 294 1.51e-166 466
MsG0180006136.01.T01 MTR_1g115235 77.228 303 45 6 1 290 1 292 3.22e-138 392
MsG0180006136.01.T01 MTR_8g086060 36.875 160 85 5 132 288 172 318 1.80e-23 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006136.01.T01 AT2G31840 74.129 201 49 2 93 290 109 309 1.56e-97 291
MsG0180006136.01.T01 AT2G31840 74.129 201 49 2 93 290 109 309 1.56e-97 291
MsG0180006136.01.T01 AT4G28590 38.312 154 77 7 139 288 158 297 1.74e-24 101

Find 65 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTCAAACCCCACTTTAC+AGG 0.236764 1:-100585664 MsG0180006136.01.T01:CDS
GCAGCCTTCATGTCTTTAAT+AGG 0.271223 1:+100585186 None:intergenic
GTCTACAACCTCTTGAATAT+CGG 0.302496 1:+100585440 None:intergenic
TCAGCATCTTGAGGCCAATT+AGG 0.323877 1:+100585348 None:intergenic
GCCTCAAGATGCTGATGGTT+GGG 0.347115 1:-100585340 MsG0180006136.01.T01:CDS
GAAGTTATCTTTACTAAAGC+AGG 0.362361 1:-100582865 MsG0180006136.01.T01:CDS
TGATTGAACTCTTGTTAGTT+TGG 0.367683 1:+100585632 None:intergenic
TTGTCCACAATCGTTATAGA+AGG 0.369198 1:-100585116 MsG0180006136.01.T01:intron
TCACTCAAATCTGATGGTTC+TGG 0.371232 1:-100585612 MsG0180006136.01.T01:CDS
GCTTTAGTAAAGATAACTTC+TGG 0.387977 1:+100582868 None:intergenic
GTTGTAAAGAGAAAATGAAT+TGG 0.401953 1:+100585710 None:intergenic
TTGTAAAGAGAAAATGAATT+GGG 0.405487 1:+100585711 None:intergenic
TTTACAACAAACTCTTCAAC+CGG 0.424293 1:-100585695 MsG0180006136.01.T01:CDS
TCTTCAAGAGTCATAACATA+AGG 0.432780 1:+100585510 None:intergenic
GGCTGCCTAGTGTTCTCTGC+TGG 0.433044 1:+100585798 None:intergenic
TCTACAACCTCTTGAATATC+GGG 0.446395 1:+100585441 None:intergenic
TGGAAGAGGAGGATCCTAAT+TGG 0.447524 1:-100585362 MsG0180006136.01.T01:CDS
TAGGCAGCCTCCTCCGACCA+TGG 0.454179 1:-100585784 MsG0180006136.01.T01:exon
CTTTAGTAAAGATAACTTCT+GGG 0.455068 1:+100582869 None:intergenic
AGAAGGCTGTGCATATCATA+TGG 0.459941 1:-100583087 MsG0180006136.01.T01:CDS
AGACATGAAGGCTGCTGAAT+GGG 0.460094 1:-100585178 MsG0180006136.01.T01:CDS
TAAAGTGGGGTTTGAGAAAA+GGG 0.468151 1:+100585668 None:intergenic
GTAAAGTGGGGTTTGAGAAA+AGG 0.470216 1:+100585667 None:intergenic
CCTCAAGATGCTGATGGTTG+GGG 0.471802 1:-100585339 MsG0180006136.01.T01:CDS
GGTTTGAGAAAAGGGTCTTC+CGG 0.471829 1:+100585676 None:intergenic
GAATCATTAACCTGTAAAGT+GGG 0.479361 1:+100585654 None:intergenic
GGAATCATTAACCTGTAAAG+TGG 0.480863 1:+100585653 None:intergenic
ATTGTGGACAAGAATAATCA+AGG 0.499873 1:+100585128 None:intergenic
CTTCAAGAGTCATAACATAA+GGG 0.503004 1:+100585511 None:intergenic
AAGACATGAAGGCTGCTGAA+TGG 0.504100 1:-100585179 MsG0180006136.01.T01:CDS
AGAAACCAGCAGAGAACACT+AGG 0.506216 1:-100585803 MsG0180006136.01.T01:five_prime_UTR
TTACCAACTTGTTGTGGAAG+AGG 0.507121 1:-100585376 MsG0180006136.01.T01:CDS
GATGGTTGGGGATTCAGCCT+TGG 0.507224 1:-100585327 MsG0180006136.01.T01:CDS
AGTTGCTGCACTTAAAGTAT+CGG 0.515906 1:-100582896 MsG0180006136.01.T01:CDS
TTATCATCTTGCCACACTAT+CGG 0.517607 1:+100585219 None:intergenic
TAATGATTACCAACTTGTTG+TGG 0.520440 1:-100585382 MsG0180006136.01.T01:CDS
ATCATCAACATCATCGTCCT+CGG 0.534011 1:+100585248 None:intergenic
GGCCTCAAGATGCTGATGGT+TGG 0.550479 1:-100585341 MsG0180006136.01.T01:CDS
CAAACCTTCTATAACGATTG+TGG 0.550589 1:+100585112 None:intergenic
TTTATTACTTACTCTTGGTG+AGG 0.554532 1:+100583051 None:intergenic
TTGAGTGCCATGGTCGGAGG+AGG 0.555658 1:+100585777 None:intergenic
TCAAATCTGATGGTTCTGGT+TGG 0.565426 1:-100585608 MsG0180006136.01.T01:CDS
TTATTACTTACTCTTGGTGA+GGG 0.566848 1:+100583052 None:intergenic
GTTCAATCACTCAAATCTGA+TGG 0.569587 1:-100585618 MsG0180006136.01.T01:CDS
CCTCCTCTTCCACAACAAGT+TGG 0.573358 1:+100585373 None:intergenic
TCGTCCTATTAAAGACATGA+AGG 0.589532 1:-100585190 MsG0180006136.01.T01:CDS
GGCAAATTGAGTGCCATGGT+CGG 0.590720 1:+100585771 None:intergenic
CCAACTTGTTGTGGAAGAGG+AGG 0.593627 1:-100585373 MsG0180006136.01.T01:CDS
AATTCGAGAAGAACTAGAGA+AGG 0.595768 1:-100583104 MsG0180006136.01.T01:CDS
AAGTTATCTTTACTAAAGCA+GGG 0.597570 1:-100582864 MsG0180006136.01.T01:CDS
GGTTCTGGTTGGAAGAGAAG+AGG 0.600482 1:-100585597 MsG0180006136.01.T01:CDS
AATTGGCCTCAAGATGCTGA+TGG 0.603896 1:-100585345 MsG0180006136.01.T01:CDS
CATGAAGGCTGCTGAATGGG+AGG 0.605185 1:-100585175 MsG0180006136.01.T01:CDS
CTCTTGAAGAGAGACAAGAA+TGG 0.610446 1:-100585497 MsG0180006136.01.T01:CDS
ATATGTTTCATTGATGACAG+TGG 0.611526 1:+100585750 None:intergenic
GGAAGATAATGATGATGCCG+AGG 0.624630 1:-100585265 MsG0180006136.01.T01:CDS
AAATTGAGTGCCATGGTCGG+AGG 0.630316 1:+100585774 None:intergenic
AATCATTAACCTGTAAAGTG+GGG 0.632642 1:+100585655 None:intergenic
CCCCAACCATCAGCATCTTG+AGG 0.632853 1:+100585339 None:intergenic
TTGTGGACAAGAATAATCAA+GGG 0.634415 1:+100585129 None:intergenic
TAAGAAACCCGATATTCAAG+AGG 0.644830 1:-100585448 MsG0180006136.01.T01:CDS
TGATAGCGACGATGAAGATG+AGG 0.647162 1:-100585550 MsG0180006136.01.T01:CDS
CAGTGGCAAATTGAGTGCCA+TGG 0.668004 1:+100585767 None:intergenic
ATGATGATAAGCCGATAGTG+TGG 0.713878 1:-100585230 MsG0180006136.01.T01:CDS
TCAAGAGGTTGTAGACACCG+AGG 0.747245 1:-100585433 MsG0180006136.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATAAAAAAAACAATAGTTT+TGG + Chr1:100583618-100583637 None:intergenic 15.0%
!!! TAAGAAAAGATTCTTTTTTT+AGG - Chr1:100584851-100584870 MsG0180006136.01.T01:intron 15.0%
!! AACTAAACTAAATCAAGAAA+AGG + Chr1:100585024-100585043 None:intergenic 20.0%
!! AGTTATTGTAGAGTATATTT+AGG - Chr1:100584072-100584091 MsG0180006136.01.T01:intron 20.0%
!! TACAATACAAAACAAAAAGA+AGG - Chr1:100583370-100583389 MsG0180006136.01.T01:intron 20.0%
!! TAGAATACAATGCATATATA+TGG - Chr1:100585131-100585150 MsG0180006136.01.T01:CDS 20.0%
!! TGTAATGTAAGAAGTTAAAA+AGG + Chr1:100583746-100583765 None:intergenic 20.0%
!! TGTGATATAAGAAGAAAAAA+AGG + Chr1:100584992-100585011 None:intergenic 20.0%
!! TTGTAAAGAGAAAATGAATT+GGG + Chr1:100582948-100582967 None:intergenic 20.0%
!!! AAGATTTTATATCGTGATAA+AGG - Chr1:100585815-100585834 MsG0180006136.01.T01:five_prime_UTR 20.0%
!!! ACATTTTCACTTTTATTCTT+AGG - Chr1:100585512-100585531 MsG0180006136.01.T01:CDS 20.0%
!!! AGATTTTTGAGAAATTGTAA+AGG - Chr1:100582803-100582822 MsG0180006136.01.T01:CDS 20.0%
!!! CATTGTATCTTTTTTGAAAT+GGG - Chr1:100585339-100585358 MsG0180006136.01.T01:CDS 20.0%
!!! CTTTTACTGAATTTTGTATT+TGG + Chr1:100585854-100585873 None:intergenic 20.0%
!!! TCATTGTATCTTTTTTGAAA+TGG - Chr1:100585338-100585357 MsG0180006136.01.T01:CDS 20.0%
!!! TTTCTCTTTTTAGATAAGTT+TGG + Chr1:100582831-100582850 None:intergenic 20.0%
! AACAAGCTAAGCTAAAAATA+TGG + Chr1:100584748-100584767 None:intergenic 25.0%
! AAGTTATCTTTACTAAAGCA+GGG - Chr1:100585792-100585811 MsG0180006136.01.T01:five_prime_UTR 25.0%
! ATGACTTTATTACTTACTCT+TGG + Chr1:100585613-100585632 None:intergenic 25.0%
! CTTTAGTAAAGATAACTTCT+GGG + Chr1:100585790-100585809 None:intergenic 25.0%
! GTTAGTCGATTATCAATTAA+TGG - Chr1:100583675-100583694 MsG0180006136.01.T01:intron 25.0%
! GTTGTAAAGAGAAAATGAAT+TGG + Chr1:100582949-100582968 None:intergenic 25.0%
! TAAAAGTGAAAATGTTAGAC+AGG + Chr1:100585507-100585526 None:intergenic 25.0%
!! ATGTATGATACGATTTTCAA+TGG - Chr1:100584920-100584939 MsG0180006136.01.T01:intron 25.0%
!! CTAAGCTAAAAATATGGTTT+TGG + Chr1:100584742-100584761 None:intergenic 25.0%
!! TATAATGATATGAAAGTGTG+TGG - Chr1:100585709-100585728 MsG0180006136.01.T01:CDS 25.0%
!! TCTAACTTCAAAAGCATATT+AGG + Chr1:100585442-100585461 None:intergenic 25.0%
!! TCTTTTCTTATATATGAGAC+CGG + Chr1:100584841-100584860 None:intergenic 25.0%
!! TTATCTACCTCTATTTTACT+AGG - Chr1:100584627-100584646 MsG0180006136.01.T01:intron 25.0%
!!! TTATCTTGTTTTAGTTGAAG+TGG - Chr1:100583638-100583657 MsG0180006136.01.T01:intron 25.0%
AAGAAAAATCAGACAGGTTA+TGG - Chr1:100583184-100583203 MsG0180006136.01.T01:intron 30.0%
AAGTCATACAATCATTCCTT+TGG - Chr1:100585626-100585645 MsG0180006136.01.T01:CDS 30.0%
AATCATTAACCTGTAAAGTG+GGG + Chr1:100583004-100583023 None:intergenic 30.0%
ATGGATTTCTATCATGATTC+AGG - Chr1:100585150-100585169 MsG0180006136.01.T01:CDS 30.0%
ATTGTGGACAAGAATAATCA+AGG + Chr1:100583531-100583550 None:intergenic 30.0%
CTGAAAACCATAGTTCTTTA+AGG + Chr1:100584233-100584252 None:intergenic 30.0%
CTTCAAGAGTCATAACATAA+GGG + Chr1:100583148-100583167 None:intergenic 30.0%
GAAGTTATCTTTACTAAAGC+AGG - Chr1:100585791-100585810 MsG0180006136.01.T01:five_prime_UTR 30.0%
GAATCATTAACCTGTAAAGT+GGG + Chr1:100583005-100583024 None:intergenic 30.0%
GATAAAATAGCTGAAACCAA+AGG + Chr1:100585645-100585664 None:intergenic 30.0%
GCTTTAGTAAAGATAACTTC+TGG + Chr1:100585791-100585810 None:intergenic 30.0%
GTACTAGCTGTCATATAATT+AGG - Chr1:100584032-100584051 MsG0180006136.01.T01:intron 30.0%
TCAAGTCATCAACATAAACT+AGG + Chr1:100584316-100584335 None:intergenic 30.0%
TCTTCAAGAGTCATAACATA+AGG + Chr1:100583149-100583168 None:intergenic 30.0%
TGATTGAACTCTTGTTAGTT+TGG + Chr1:100583027-100583046 None:intergenic 30.0%
TTATTACTTACTCTTGGTGA+GGG + Chr1:100585607-100585626 None:intergenic 30.0%
TTCCACCTGTTTATATACAT+GGG - Chr1:100583903-100583922 MsG0180006136.01.T01:intron 30.0%
TTGTGGACAAGAATAATCAA+GGG + Chr1:100583530-100583549 None:intergenic 30.0%
TTTACAACAAACTCTTCAAC+CGG - Chr1:100582961-100582980 MsG0180006136.01.T01:intron 30.0%
TTTATTACTTACTCTTGGTG+AGG + Chr1:100585608-100585627 None:intergenic 30.0%
TTTCCACCTGTTTATATACA+TGG - Chr1:100583902-100583921 MsG0180006136.01.T01:intron 30.0%
! AATGTTAGACAGGATTGTTT+TGG + Chr1:100585497-100585516 None:intergenic 30.0%
! ACGATTTTCAATGGTCATTT+TGG - Chr1:100584929-100584948 MsG0180006136.01.T01:intron 30.0%
! AGCATATACCTTTTCATACA+TGG - Chr1:100584166-100584185 MsG0180006136.01.T01:intron 30.0%
! ATATGTTTCATTGATGACAG+TGG + Chr1:100582909-100582928 None:intergenic 30.0%
! CATTTTCTTCTTCTTTTCCT+CGG + Chr1:100583243-100583262 None:intergenic 30.0%
! TTATCAATTAATGGCCGTTT+TGG - Chr1:100583684-100583703 MsG0180006136.01.T01:intron 30.0%
! TTCTGAGAGAATAAGAGATT+TGG - Chr1:100585102-100585121 MsG0180006136.01.T01:intron 30.0%
!! AATTTTAGCACTCACATAAG+AGG - Chr1:100584000-100584019 MsG0180006136.01.T01:intron 30.0%
!! ACATAAGGGTCATTTTGTTT+CGG + Chr1:100583134-100583153 None:intergenic 30.0%
!! CAGCTATTTTATCACAAAGT+TGG - Chr1:100585652-100585671 MsG0180006136.01.T01:CDS 30.0%
!! TAATGATTACCAACTTGTTG+TGG - Chr1:100583274-100583293 MsG0180006136.01.T01:intron 30.0%
!! TGACTGAGTTGTTTGTTATT+TGG - Chr1:100583714-100583733 MsG0180006136.01.T01:intron 30.0%
!!! CGAATTTTTTCATTGTCCTT+TGG + Chr1:100585538-100585557 None:intergenic 30.0%
!!! GGTGTCTTGAAGTATTTTTT+GGG - Chr1:100584413-100584432 MsG0180006136.01.T01:intron 30.0%
!!! TTAGCTTGTTTTAGTCTAAG+TGG - Chr1:100584758-100584777 MsG0180006136.01.T01:intron 30.0%
AAAGATACCAATAGCATTCC+TGG + Chr1:100584450-100584469 None:intergenic 35.0%
AAGTAAAATTGAACACCACC+AGG + Chr1:100585367-100585386 None:intergenic 35.0%
AATTCGAGAAGAACTAGAGA+AGG - Chr1:100585552-100585571 MsG0180006136.01.T01:CDS 35.0%
AGAGTATATTTAGGCCTAGA+TGG - Chr1:100584081-100584100 MsG0180006136.01.T01:intron 35.0%
AGCTTATGATTCTGCTTCAT+AGG + Chr1:100584545-100584564 None:intergenic 35.0%
AGTCTCCCATGTATATAAAC+AGG + Chr1:100583911-100583930 None:intergenic 35.0%
AGTTGCTGCACTTAAAGTAT+CGG - Chr1:100585760-100585779 MsG0180006136.01.T01:CDS 35.0%
ATAAACAGGTGGAAATCAAC+AGG + Chr1:100583897-100583916 None:intergenic 35.0%
ATCACTACTATAGCCAAATG+CGG + Chr1:100585413-100585432 None:intergenic 35.0%
ATGGAGAAGAAAAATCAGAC+AGG - Chr1:100583178-100583197 MsG0180006136.01.T01:intron 35.0%
CAAACCTTCTATAACGATTG+TGG + Chr1:100583547-100583566 None:intergenic 35.0%
CACTCACATAAGAGGTAATT+AGG - Chr1:100584008-100584027 MsG0180006136.01.T01:intron 35.0%
CTCACTTTGCACACATAAAA+AGG + Chr1:100585060-100585079 None:intergenic 35.0%
CTCTGATACCATGTATGAAA+AGG + Chr1:100584177-100584196 None:intergenic 35.0%
CTTGCAATATCACACAATTG+TGG - Chr1:100584289-100584308 MsG0180006136.01.T01:intron 35.0%
GAAATGATCCAGTAGCTATA+TGG - Chr1:100584345-100584364 MsG0180006136.01.T01:intron 35.0%
GAACAAGGAGTAGTCAAAAT+AGG + Chr1:100584260-100584279 None:intergenic 35.0%
GCTTGACTGTAAACATGATA+TGG + Chr1:100585470-100585489 None:intergenic 35.0%
GGAATCATTAACCTGTAAAG+TGG + Chr1:100583006-100583025 None:intergenic 35.0%
GTCTACAACCTCTTGAATAT+CGG + Chr1:100583219-100583238 None:intergenic 35.0%
GTTCAATCACTCAAATCTGA+TGG - Chr1:100583038-100583057 MsG0180006136.01.T01:intron 35.0%
TAAAGTGGGGTTTGAGAAAA+GGG + Chr1:100582991-100583010 None:intergenic 35.0%
TAAGAAACCCGATATTCAAG+AGG - Chr1:100583208-100583227 MsG0180006136.01.T01:intron 35.0%
TATACATGGGAGACTATTAG+CGG - Chr1:100583916-100583935 MsG0180006136.01.T01:intron 35.0%
TCGTCCTATTAAAGACATGA+AGG - Chr1:100583466-100583485 MsG0180006136.01.T01:intron 35.0%
TCTACAACCTCTTGAATATC+GGG + Chr1:100583218-100583237 None:intergenic 35.0%
TTATCATCTTGCCACACTAT+CGG + Chr1:100583440-100583459 None:intergenic 35.0%
TTCACTTTCCATATAGCTAC+TGG + Chr1:100584356-100584375 None:intergenic 35.0%
TTCAGACAGAATTAGAGATC+TGG - Chr1:100583854-100583873 MsG0180006136.01.T01:intron 35.0%
TTCTTATATATGAGACCGGA+GGG + Chr1:100584837-100584856 None:intergenic 35.0%
TTGTCCACAATCGTTATAGA+AGG - Chr1:100583540-100583559 MsG0180006136.01.T01:intron 35.0%
TTTCTTATATATGAGACCGG+AGG + Chr1:100584838-100584857 None:intergenic 35.0%
! ACGTTTTCATAAGAAGGACT+TGG - Chr1:100584391-100584410 MsG0180006136.01.T01:intron 35.0%
! CACTTTTATTCTTAGGCCAA+AGG - Chr1:100585519-100585538 MsG0180006136.01.T01:CDS 35.0%
! CGTTTTCATAAGAAGGACTT+GGG - Chr1:100584392-100584411 MsG0180006136.01.T01:intron 35.0%
! GAACACACGTTTTCATAAGA+AGG - Chr1:100584385-100584404 MsG0180006136.01.T01:intron 35.0%
! TAGCTAGCCTAGTAAAATAG+AGG + Chr1:100584637-100584656 None:intergenic 35.0%
!! AGTTGTTTGTTATTTGGAGC+TGG - Chr1:100583720-100583739 MsG0180006136.01.T01:intron 35.0%
!!! GGGTGTCTTGAAGTATTTTT+TGG - Chr1:100584412-100584431 MsG0180006136.01.T01:intron 35.0%
!!! GTATTTTTTGGGTGTCAAAG+TGG - Chr1:100584424-100584443 MsG0180006136.01.T01:intron 35.0%
AACCGACAATGGATCATTGA+AGG - Chr1:100584700-100584719 MsG0180006136.01.T01:intron 40.0%
ACCAATTGTCAATGTCGTTC+AGG + Chr1:100584599-100584618 None:intergenic 40.0%
ACCTGAACGACATTGACAAT+TGG - Chr1:100584595-100584614 MsG0180006136.01.T01:intron 40.0%
AGAAGGCTGTGCATATCATA+TGG - Chr1:100585569-100585588 MsG0180006136.01.T01:CDS 40.0%
AGCCTTCAATGATCCATTGT+CGG + Chr1:100584705-100584724 None:intergenic 40.0%
AGCGGACAATTAGGTGTATT+TGG - Chr1:100583934-100583953 MsG0180006136.01.T01:intron 40.0%
AGTAGATTGCTAGTTGTAGC+TGG - Chr1:100584966-100584985 MsG0180006136.01.T01:intron 40.0%
AGTCTCTCATGTATACACAC+AGG + Chr1:100585185-100585204 None:intergenic 40.0%
AGTTTGGAAAACCAACACCT+AGG + Chr1:100584202-100584221 None:intergenic 40.0%
ATCATCAACATCATCGTCCT+CGG + Chr1:100583411-100583430 None:intergenic 40.0%
ATGATGATAAGCCGATAGTG+TGG - Chr1:100583426-100583445 MsG0180006136.01.T01:intron 40.0%
ATGGATCATTGAAGGCTGAA+TGG - Chr1:100584708-100584727 MsG0180006136.01.T01:intron 40.0%
ATTCATGCAACAACCGACAA+TGG - Chr1:100584689-100584708 MsG0180006136.01.T01:intron 40.0%
ATTCTTGAGACTGGGATTCT+AGG - Chr1:100584500-100584519 MsG0180006136.01.T01:intron 40.0%
ATTGTCAATGTCGTTCAGGT+TGG + Chr1:100584595-100584614 None:intergenic 40.0%
CATGTATACACACAGGTTCT+TGG + Chr1:100585178-100585197 None:intergenic 40.0%
CCTAGATGGAGTGATGTATT+CGG - Chr1:100584095-100584114 MsG0180006136.01.T01:intron 40.0%
CTAAGTGGCTGAATGCTAAT+TGG - Chr1:100584773-100584792 MsG0180006136.01.T01:intron 40.0%
CTAGATGGAGTGATGTATTC+GGG - Chr1:100584096-100584115 MsG0180006136.01.T01:intron 40.0%
CTCCCATGTATATAAACAGG+TGG + Chr1:100583908-100583927 None:intergenic 40.0%
CTCTTGAAGAGAGACAAGAA+TGG - Chr1:100583159-100583178 MsG0180006136.01.T01:intron 40.0%
GCAGCCTTCATGTCTTTAAT+AGG + Chr1:100583473-100583492 None:intergenic 40.0%
GCGGAAGTTATTTGCACATA+AGG + Chr1:100585394-100585413 None:intergenic 40.0%
GCTACAACTAGCAATCTACT+CGG + Chr1:100584966-100584985 None:intergenic 40.0%
GTAAAGTGGGGTTTGAGAAA+AGG + Chr1:100582992-100583011 None:intergenic 40.0%
GTGCAAATAACTTCCGCATT+TGG - Chr1:100585397-100585416 MsG0180006136.01.T01:CDS 40.0%
GTTTGGAAAACCAACACCTA+GGG + Chr1:100584201-100584220 None:intergenic 40.0%
TAGATGGAGTGATGTATTCG+GGG - Chr1:100584097-100584116 MsG0180006136.01.T01:intron 40.0%
TCACTCAAATCTGATGGTTC+TGG - Chr1:100583044-100583063 MsG0180006136.01.T01:intron 40.0%
TCAGTCAGAGTTCTCCAAAA+CGG + Chr1:100583701-100583720 None:intergenic 40.0%
TCTGCTGCCTTAAAGAACTA+TGG - Chr1:100584223-100584242 MsG0180006136.01.T01:intron 40.0%
TCTTGTCGAAAAACTGTCCA+AGG + Chr1:100583349-100583368 None:intergenic 40.0%
TGCAAGTTGCAACATGAACA+AGG + Chr1:100584275-100584294 None:intergenic 40.0%
TGCTTGAGTAAGTAGCTGAA+TGG - Chr1:100583584-100583603 MsG0180006136.01.T01:intron 40.0%
TTGAAACTATCTACTCCCTC+CGG - Chr1:100584819-100584838 MsG0180006136.01.T01:intron 40.0%
TTTCTCAAACCCCACTTTAC+AGG - Chr1:100582992-100583011 MsG0180006136.01.T01:intron 40.0%
TTTGGAAAACCAACACCTAG+GGG + Chr1:100584200-100584219 None:intergenic 40.0%
! GAGACTATTAGCGGACAATT+AGG - Chr1:100583925-100583944 MsG0180006136.01.T01:intron 40.0%
!! GTTGATGACTTGATTGTCTC+AGG - Chr1:100584323-100584342 MsG0180006136.01.T01:intron 40.0%
!! TCAAATCTGATGGTTCTGGT+TGG - Chr1:100583048-100583067 MsG0180006136.01.T01:intron 40.0%
!! TTACCAACTTGTTGTGGAAG+AGG - Chr1:100583280-100583299 MsG0180006136.01.T01:intron 40.0%
!!! TCTTTTTTGAAATGGGCTCC+TGG - Chr1:100585346-100585365 MsG0180006136.01.T01:CDS 40.0%
AAAGTGGCCAGGAATGCTAT+TGG - Chr1:100584440-100584459 MsG0180006136.01.T01:intron 45.0%
AAGACATGAAGGCTGCTGAA+TGG - Chr1:100583477-100583496 MsG0180006136.01.T01:intron 45.0%
AGAAACCAGCAGAGAACACT+AGG - Chr1:100582853-100582872 MsG0180006136.01.T01:CDS 45.0%
AGACATGAAGGCTGCTGAAT+GGG - Chr1:100583478-100583497 MsG0180006136.01.T01:intron 45.0%
CATAAGCTTGCATTAGCCCA+GGG - Chr1:100584557-100584576 MsG0180006136.01.T01:intron 45.0%
CATAGGCACACTAACAGGTT+AGG + Chr1:100584528-100584547 None:intergenic 45.0%
CCGAATACATCACTCCATCT+AGG + Chr1:100584098-100584117 None:intergenic 45.0%
GGAGGGAGTAGATAGTTTCA+AGG + Chr1:100584820-100584839 None:intergenic 45.0%
GGTTTGAGAAAAGGGTCTTC+CGG + Chr1:100582983-100583002 None:intergenic 45.0%
TCAGCATCTTGAGGCCAATT+AGG + Chr1:100583311-100583330 None:intergenic 45.0%
TCATAAGCTTGCATTAGCCC+AGG - Chr1:100584556-100584575 MsG0180006136.01.T01:intron 45.0%
TCGACGTCATTCTTGAGACT+GGG - Chr1:100584492-100584511 MsG0180006136.01.T01:intron 45.0%
TGCTTCATAGGCACACTAAC+AGG + Chr1:100584533-100584552 None:intergenic 45.0%
TGGAAGAGGAGGATCCTAAT+TGG - Chr1:100583294-100583313 MsG0180006136.01.T01:intron 45.0%
TTGGTCAAGAAAAGGACCCT+GGG + Chr1:100584576-100584595 None:intergenic 45.0%
! AATGACGTCGAGAGCACATT+TGG + Chr1:100584483-100584502 None:intergenic 45.0%
! AATTGGCCTCAAGATGCTGA+TGG - Chr1:100583311-100583330 MsG0180006136.01.T01:intron 45.0%
! ATGACGTCGAGAGCACATTT+GGG + Chr1:100584482-100584501 None:intergenic 45.0%
! GGAAGATAATGATGATGCCG+AGG - Chr1:100583391-100583410 MsG0180006136.01.T01:intron 45.0%
! TGATAGCGACGATGAAGATG+AGG - Chr1:100583106-100583125 MsG0180006136.01.T01:CDS 45.0%
!! CACACGCACGAGAAAGTATT+CGG + Chr1:100583802-100583821 None:intergenic 45.0%
!! CGTTCAGGTTGGTCAAGAAA+AGG + Chr1:100584584-100584603 None:intergenic 45.0%
!! CTTTAAGGCAGCAGAGAGTT+TGG + Chr1:100584218-100584237 None:intergenic 45.0%
!!! TTTTTGAAATGGGCTCCTGG+TGG - Chr1:100585349-100585368 MsG0180006136.01.T01:CDS 45.0%
!! ATATCATTATAATATATAAT+AGG + Chr1:100585700-100585719 None:intergenic 5.0%
AAATTGAGTGCCATGGTCGG+AGG + Chr1:100582885-100582904 None:intergenic 50.0%
CAGTGGCAAATTGAGTGCCA+TGG + Chr1:100582892-100582911 None:intergenic 50.0%
CCTCAAGATGCTGATGGTTG+GGG - Chr1:100583317-100583336 MsG0180006136.01.T01:intron 50.0%
CCTCCTCTTCCACAACAAGT+TGG + Chr1:100583286-100583305 None:intergenic 50.0%
CTCGACGTCATTCTTGAGAC+TGG - Chr1:100584491-100584510 MsG0180006136.01.T01:intron 50.0%
GCCTCAAGATGCTGATGGTT+GGG - Chr1:100583316-100583335 MsG0180006136.01.T01:intron 50.0%
GGCAAATTGAGTGCCATGGT+CGG + Chr1:100582888-100582907 None:intergenic 50.0%
GTTGGTCAAGAAAAGGACCC+TGG + Chr1:100584577-100584596 None:intergenic 50.0%
TACATGGTATCAGAGCCCCT+AGG - Chr1:100584182-100584201 MsG0180006136.01.T01:intron 50.0%
TCAAGAGGTTGTAGACACCG+AGG - Chr1:100583223-100583242 MsG0180006136.01.T01:intron 50.0%
! GGTTCTGGTTGGAAGAGAAG+AGG - Chr1:100583059-100583078 MsG0180006136.01.T01:intron 50.0%
!! CCAACTTGTTGTGGAAGAGG+AGG - Chr1:100583283-100583302 MsG0180006136.01.T01:intron 50.0%
!! TTTTGGGTGTCAAAGTGGCC+AGG - Chr1:100584429-100584448 MsG0180006136.01.T01:intron 50.0%
CATGAAGGCTGCTGAATGGG+AGG - Chr1:100583481-100583500 MsG0180006136.01.T01:intron 55.0%
CCCCAACCATCAGCATCTTG+AGG + Chr1:100583320-100583339 None:intergenic 55.0%
GATGGTTGGGGATTCAGCCT+TGG - Chr1:100583329-100583348 MsG0180006136.01.T01:intron 55.0%
GGCCTCAAGATGCTGATGGT+TGG - Chr1:100583315-100583334 MsG0180006136.01.T01:intron 55.0%
GTATCAGAGCCCCTAGGTGT+TGG - Chr1:100584188-100584207 MsG0180006136.01.T01:intron 55.0%
! CGTCGAGAGCACATTTGGGT+TGG + Chr1:100584478-100584497 None:intergenic 55.0%
!! CGCACGAGAAAGTATTCGGC+AGG + Chr1:100583798-100583817 None:intergenic 55.0%
GGCTGCCTAGTGTTCTCTGC+TGG + Chr1:100582861-100582880 None:intergenic 60.0%
TTGAGTGCCATGGTCGGAGG+AGG + Chr1:100582882-100582901 None:intergenic 60.0%
TAGGCAGCCTCCTCCGACCA+TGG - Chr1:100582872-100582891 MsG0180006136.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 100582798 100585880 100582798 ID=MsG0180006136.01;Name=MsG0180006136.01
Chr1 mRNA 100582798 100585880 100582798 ID=MsG0180006136.01.T01;Parent=MsG0180006136.01;Name=MsG0180006136.01.T01;_AED=0.49;_eAED=0.51;_QI=93|1|0.66|1|1|1|3|0|302
Chr1 exon 100582798 100582953 100582798 ID=MsG0180006136.01.T01:exon:11599;Parent=MsG0180006136.01.T01
Chr1 exon 100583063 100583144 100583063 ID=MsG0180006136.01.T01:exon:11598;Parent=MsG0180006136.01.T01
Chr1 exon 100585117 100585880 100585117 ID=MsG0180006136.01.T01:exon:11597;Parent=MsG0180006136.01.T01
Chr1 five_prime_UTR 100585788 100585880 100585788 ID=MsG0180006136.01.T01:five_prime_utr;Parent=MsG0180006136.01.T01
Chr1 CDS 100585117 100585787 100585117 ID=MsG0180006136.01.T01:cds;Parent=MsG0180006136.01.T01
Chr1 CDS 100583063 100583144 100583063 ID=MsG0180006136.01.T01:cds;Parent=MsG0180006136.01.T01
Chr1 CDS 100582798 100582953 100582798 ID=MsG0180006136.01.T01:cds;Parent=MsG0180006136.01.T01
Gene Sequence

>MsG0180006136.01.T01

ATGGCACTCAATTTGCCACTGTCATCAATGAAACATATAAACTTCAACGAGAAACCCAATTCATTTTCTCTTTACAACAAACTCTTCAACCGGAAGACCCTTTTCTCAAACCCCACTTTACAGGTTAATGATTCCAAACTAACAAGAGTTCAATCACTCAAATCTGATGGTTCTGGTTGGAAGAGAAGAGGTAAAGAATCATACAGTGACAGTGATGATAGCGACGATGAAGATGAGGCACCGAAACAAAATGACCCTTATGTTATGACTCTTGAAGAGAGACAAGAATGGAGAAGAAAAATCAGACAGGTTATGGATAAGAAACCCGATATTCAAGAGGTTGTAGACACCGAGGAAAAGAAGAAGAAAATGCAAAAGCTAATTAATGATTACCAACTTGTTGTGGAAGAGGAGGATCCTAATTGGCCTCAAGATGCTGATGGTTGGGGATTCAGCCTTGGACAGTTTTTCGACAAGATTACAATACAAAACAAAAAGAAGGAAGATAATGATGATGCCGAGGACGATGATGTTGATGATGATAAGCCGATAGTGTGGCAAGATGATAATTACATTCGTCCTATTAAAGACATGAAGGCTGCTGAATGGGAGGAAACTGTGTTCAAAGATATTAGTCCCTTGATTATTCTTGTCCACAATCGTTATAGAAGGCCAAAGGACAATGAAAAAATTCGAGAAGAACTAGAGAAGGCTGTGCATATCATATGGAACTGCAGATTACCCTCACCAAGATGTGTGGCACTTGACGCTGTTGTTGAGACTGAACTAGTTGCTGCACTTAAAGTATCGGTTTTCCCAGAAGTTATCTTTACTAAAGCAGGGAAGATTTTATATCGTGATAAAGGTATTGATCTGTTACCAAATACAAAATTCAGTAAAAGAAATTAG

Protein sequence

>MsG0180006136.01.T01

MALNLPLSSMKHINFNEKPNSFSLYNKLFNRKTLFSNPTLQVNDSKLTRVQSLKSDGSGWKRRGKESYSDSDDSDDEDEAPKQNDPYVMTLEERQEWRRKIRQVMDKKPDIQEVVDTEEKKKKMQKLINDYQLVVEEEDPNWPQDADGWGFSLGQFFDKITIQNKKKEDNDDAEDDDVDDDKPIVWQDDNYIRPIKDMKAAEWEETVFKDISPLIILVHNRYRRPKDNEKIREELEKAVHIIWNCRLPSPRCVALDAVVETELVAALKVSVFPEVIFTKAGKILYRDKGIDLLPNTKFSKRN*