AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006030.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006030.01.T01 MTR_1g112280 82.698 341 16 5 1 331 1 308 0.0 538
MsG0180006030.01.T01 MTR_1g112280 84.894 331 27 4 1 331 1 308 0.0 536
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006030.01.T01 AT1G75010 45.769 260 120 2 72 331 69 307 1.73e-64 217

Find 63 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATTTGATTGTCCTTTCC+TGG 0.194395 1:+99084041 MsG0180006030.01.T01:CDS
GAGAATACTAATTTACTTAT+TGG 0.199862 1:+99082354 MsG0180006030.01.T01:CDS
TACAACAACGCAACGCTAAA+TGG 0.233717 1:+99080733 MsG0180006030.01.T01:exon
CTTCTTCGTCACTGCCATTA+TGG 0.243673 1:+99080842 MsG0180006030.01.T01:CDS
TTTAATAATTTCTGAATTGC+AGG 0.270512 1:-99083818 None:intergenic
CTTAACCCTTCAAAGCTAAA+AGG 0.285883 1:-99081993 None:intergenic
AGCTGTCTTCTCTGCGCTTT+TGG 0.295123 1:+99081056 MsG0180006030.01.T01:CDS
AAGAAGCCAGAATTGGATTT+GGG 0.299412 1:+99083983 MsG0180006030.01.T01:CDS
AAAGAAGCCAGAATTGGATT+TGG 0.312541 1:+99083982 MsG0180006030.01.T01:CDS
AGTGGGGCTTTGACGATTCC+TGG 0.320062 1:-99081481 None:intergenic
TTTCCTGGGTGTTTCTTTGA+AGG 0.320867 1:+99084056 MsG0180006030.01.T01:CDS
CGCAGAGAAGACAGCTGAAA+TGG 0.336689 1:-99081049 None:intergenic
TAGGTGGCTGGTGCAGGATA+TGG 0.340990 1:+99081891 MsG0180006030.01.T01:intron
CTTCCTTAGGTGGCTGGTGC+AGG 0.355054 1:+99081885 MsG0180006030.01.T01:intron
AGCAGCCCCAAATCCAATTC+TGG 0.372964 1:-99083989 None:intergenic
TTCTCAGGTAAAAGCTTTGA+TGG 0.377982 1:+99082320 MsG0180006030.01.T01:intron
GCTAAAAGGCTTCAAAACTA+TGG 0.380131 1:-99081979 None:intergenic
GAAATTAGAAATGGCTTTGA+AGG 0.385635 1:-99080777 None:intergenic
TGTTATAAAGAAGCCAGAAT+TGG 0.388043 1:+99083976 MsG0180006030.01.T01:CDS
AGAAATGGCTTTGAAGGTTG+TGG 0.393927 1:-99080771 None:intergenic
ATTCAAGGTGAAATTAGAAA+TGG 0.394932 1:-99080786 None:intergenic
TGCAATGACTTCAACCAAAT+CGG 0.396115 1:-99080981 None:intergenic
AGCTTTGATGGGGAAACTTA+AGG 0.404513 1:+99082332 MsG0180006030.01.T01:CDS
AGAAGAAGCGAAATCCGATT+TGG 0.405146 1:+99080967 MsG0180006030.01.T01:CDS
TTGAAATTGAAATTGATTCA+AGG 0.405898 1:-99080801 None:intergenic
ATATTTGATTGTCCTTTCCT+GGG 0.406458 1:+99084042 MsG0180006030.01.T01:CDS
TTGGTTGAAGTCATTGCAAT+TGG 0.411903 1:+99080986 MsG0180006030.01.T01:CDS
TTAGCGTTGCGTTGTTGTAC+AGG 0.434337 1:-99080729 None:intergenic
GGCAATTGTGAGTCCGTTTG+TGG 0.465780 1:-99081958 None:intergenic
GAGCACGACTTCATAAATAG+TGG 0.468451 1:-99081499 None:intergenic
GATTGTGACGAAATCCATAA+TGG 0.476709 1:-99080856 None:intergenic
TACAGCGGCGGAATTGATAT+CGG 0.484499 1:+99080944 MsG0180006030.01.T01:CDS
CATTGCAATTGGCGGTAGAA+AGG 0.494720 1:+99080997 MsG0180006030.01.T01:CDS
TCTCAGGTAAAAGCTTTGAT+GGG 0.495980 1:+99082321 MsG0180006030.01.T01:intron
GAAATGGCTTTGAAGGTTGT+GGG 0.505037 1:-99080770 None:intergenic
GTGGGGCTTTGACGATTCCT+GGG 0.506556 1:-99081480 None:intergenic
AGCACGACTTCATAAATAGT+GGG 0.518051 1:-99081498 None:intergenic
GCTTTGACGATTCCTGGGGA+AGG 0.519897 1:-99081475 None:intergenic
GTTGAAGTCATTGCAATTGG+CGG 0.525641 1:+99080989 MsG0180006030.01.T01:CDS
ATCTCTGCAGAACCTTCCCC+AGG 0.527558 1:+99081463 MsG0180006030.01.T01:intron
CAACAGAGGTCTACTAAACA+AGG 0.532845 1:+99081199 MsG0180006030.01.T01:CDS
AATTCCGCCGCTGTAACCGT+TGG 0.540596 1:-99080936 None:intergenic
GAAACTGTAAGGTCCACAAA+CGG 0.552096 1:+99081945 MsG0180006030.01.T01:CDS
AAAGTGTGAAAATTTAAGCT+AGG 0.558650 1:-99084084 None:intergenic
CCGCTGTAACCGTTGGACAA+TGG 0.565682 1:-99080929 None:intergenic
CACATTGTGATGTGTAGAAA+CGG 0.566826 1:-99080890 None:intergenic
CTCAGGTAAAAGCTTTGATG+GGG 0.588289 1:+99082322 MsG0180006030.01.T01:intron
TTCAAAGAAACACCCAGGAA+AGG 0.604072 1:-99084054 None:intergenic
AGAAGCCAGAATTGGATTTG+GGG 0.631126 1:+99083984 MsG0180006030.01.T01:CDS
GACAAACTTCCATTGTCCAA+CGG 0.632152 1:+99080920 MsG0180006030.01.T01:CDS
TTGTCCAACGGTTACAGCGG+CGG 0.635320 1:+99080932 MsG0180006030.01.T01:CDS
AGACTTGTTGACTCTAGATG+AGG 0.648376 1:+99083596 MsG0180006030.01.T01:CDS
AGGAAAGGAATGTACAAACA+AGG 0.654094 1:-99081534 None:intergenic
CCATTGTCCAACGGTTACAG+CGG 0.654863 1:+99080929 MsG0180006030.01.T01:CDS
TCTACACATCACAATGTGCA+CGG 0.659684 1:+99080895 MsG0180006030.01.T01:CDS
AGGGTTAAGACGAAAAGATG+AGG 0.662671 1:+99082007 MsG0180006030.01.T01:CDS
GAATGTACAAACAAGGACAA+TGG 0.663850 1:-99081527 None:intergenic
AAATATCAAAAGCGACAGTG+TGG 0.674008 1:-99081920 None:intergenic
TGGGGCTTTGACGATTCCTG+GGG 0.674157 1:-99081479 None:intergenic
GCACGACTTCATAAATAGTG+GGG 0.684283 1:-99081497 None:intergenic
AAGAAGCACAATTACAACAG+AGG 0.686634 1:+99081185 MsG0180006030.01.T01:CDS
ATACCTTCAAAGAAACACCC+AGG 0.745843 1:-99084059 None:intergenic
ACACATCACAATGTGCACGG+AGG 0.784389 1:+99080898 MsG0180006030.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATAATTTATTTTTAAT+AGG + Chr1:99083485-99083504 MsG0180006030.01.T01:intron 0.0%
!!! AACTAAAAAAAATTTTAAGA+TGG - Chr1:99082212-99082231 None:intergenic 10.0%
!!! AATTTTTTTTAGTTAATGAT+TGG + Chr1:99082218-99082237 MsG0180006030.01.T01:intron 10.0%
!!! ATTGATTTTTATCTAATAAT+TGG - Chr1:99083078-99083097 None:intergenic 10.0%
!!! CAATTTTTTTTACATATTTT+AGG + Chr1:99083094-99083113 MsG0180006030.01.T01:intron 10.0%
!! AAAACATAATTGATTAAACA+AGG - Chr1:99082252-99082271 None:intergenic 15.0%
!! ATGATTAAAAACTTCATTAA+AGG + Chr1:99082438-99082457 MsG0180006030.01.T01:intron 15.0%
!! TAAATAAGTAAAGAAAAACA+GGG + Chr1:99081354-99081373 MsG0180006030.01.T01:intron 15.0%
!!! AGAATAAAATATCTTTTCTA+CGG - Chr1:99081709-99081728 None:intergenic 15.0%
!!! TTATTTATTTTTAAGAATGC+AGG - Chr1:99083247-99083266 None:intergenic 15.0%
!! AAATAAGTAAAGAAAAACAG+GGG + Chr1:99081355-99081374 MsG0180006030.01.T01:intron 20.0%
!! AAATACCCTTATAAATTTCA+TGG + Chr1:99082941-99082960 MsG0180006030.01.T01:intron 20.0%
!! AAGAAAAAGTTGCAAAAATA+TGG - Chr1:99082391-99082410 None:intergenic 20.0%
!! AAGAAAGATATAAACAAACA+GGG - Chr1:99083882-99083901 None:intergenic 20.0%
!! ATTTAGCCATGAAATTTATA+AGG - Chr1:99082950-99082969 None:intergenic 20.0%
!! GAGAATACTAATTTACTTAT+TGG + Chr1:99082354-99082373 MsG0180006030.01.T01:CDS 20.0%
!! GTAAATAAGTAAAGAAAAAC+AGG + Chr1:99081353-99081372 MsG0180006030.01.T01:intron 20.0%
!! GTTTATATCTTTCTTGAAAT+AGG + Chr1:99083887-99083906 MsG0180006030.01.T01:intron 20.0%
!! GTTTGTGTAAAAATATCATA+TGG + Chr1:99083716-99083735 MsG0180006030.01.T01:intron 20.0%
!! TAATGCGTTTGATAAAAATA+TGG + Chr1:99082670-99082689 MsG0180006030.01.T01:intron 20.0%
!! TTTAATAATTTCTGAATTGC+AGG - Chr1:99083821-99083840 None:intergenic 20.0%
!! TTTAGCCATGAAATTTATAA+GGG - Chr1:99082949-99082968 None:intergenic 20.0%
!!! CAAAATCTTTGTTTCAATAT+TGG + Chr1:99081571-99081590 MsG0180006030.01.T01:intron 20.0%
!!! CAAATTTTCAAACTTTTTGT+AGG - Chr1:99083523-99083542 None:intergenic 20.0%
!!! CTTAAATTTTCACACTTTTT+AGG + Chr1:99084089-99084108 MsG0180006030.01.T01:CDS 20.0%
!!! GATTTATTTTGTTACTGTAA+TGG + Chr1:99082049-99082068 MsG0180006030.01.T01:intron 20.0%
!!! TTGAAATTGAAATTGATTCA+AGG - Chr1:99080804-99080823 None:intergenic 20.0%
!!! TTGATATTTTTGAAACTGTA+AGG + Chr1:99081934-99081953 MsG0180006030.01.T01:CDS 20.0%
! AAAGTGTGAAAATTTAAGCT+AGG - Chr1:99084087-99084106 None:intergenic 25.0%
! AATAAGAGAAACTATCAAGA+AGG + Chr1:99082637-99082656 MsG0180006030.01.T01:intron 25.0%
! AATAAGTAAAGAAAAACAGG+GGG + Chr1:99081356-99081375 MsG0180006030.01.T01:intron 25.0%
! ATACTTGTCAATCTGATATT+TGG + Chr1:99082804-99082823 MsG0180006030.01.T01:intron 25.0%
! ATATCTGTAAATAGTAAGAC+AGG - Chr1:99083951-99083970 None:intergenic 25.0%
! ATTCAAGGTGAAATTAGAAA+TGG - Chr1:99080789-99080808 None:intergenic 25.0%
! ATTGGTTACTTCATACTTAT+AGG - Chr1:99083060-99083079 None:intergenic 25.0%
! CAAGAAAGATATAAACAAAC+AGG - Chr1:99083883-99083902 None:intergenic 25.0%
! GCTTGTAATGCAAAAAAAAA+AGG + Chr1:99083300-99083319 MsG0180006030.01.T01:intron 25.0%
! GTCTTACTATTTACAGATAT+TGG + Chr1:99083951-99083970 MsG0180006030.01.T01:intron 25.0%
! TACATAATGAATCTGTATTC+TGG - Chr1:99081310-99081329 None:intergenic 25.0%
! TATGGTTAAAGACTTATAGA+TGG + Chr1:99083734-99083753 MsG0180006030.01.T01:intron 25.0%
! TCTATTCAACTGAAATTCTT+AGG + Chr1:99081726-99081745 MsG0180006030.01.T01:intron 25.0%
! TGGTTTATGATAAAACAGTA+TGG + Chr1:99082690-99082709 MsG0180006030.01.T01:intron 25.0%
!! ATCATAGAAAGTATGAGAAT+TGG + Chr1:99083007-99083026 MsG0180006030.01.T01:intron 25.0%
!! CTTTTATCAGTTTAATTGAC+TGG - Chr1:99083445-99083464 None:intergenic 25.0%
!! TCATAGAAAGTATGAGAATT+GGG + Chr1:99083008-99083027 MsG0180006030.01.T01:intron 25.0%
!! TTATAGATGGAATGTTTTAC+AGG + Chr1:99083747-99083766 MsG0180006030.01.T01:intron 25.0%
!!! TACAGATTTTAGAACAGATA+TGG - Chr1:99083664-99083683 None:intergenic 25.0%
AAAGCTGACTGATATGAATT+AGG + Chr1:99081781-99081800 MsG0180006030.01.T01:intron 30.0%
AACAGTATGTGACATATGAA+TGG - Chr1:99081419-99081438 None:intergenic 30.0%
AATAGCGATTGCATGAAATT+AGG - Chr1:99081099-99081118 None:intergenic 30.0%
ATATAAACAAACAGGGCTAA+TGG - Chr1:99083875-99083894 None:intergenic 30.0%
ATATTTGATTGTCCTTTCCT+GGG + Chr1:99084042-99084061 MsG0180006030.01.T01:CDS 30.0%
ATGCATATGGTGACAATAAT+TGG + Chr1:99083350-99083369 MsG0180006030.01.T01:intron 30.0%
ATTTCTATCATTGGGACTAA+GGG + Chr1:99083394-99083413 MsG0180006030.01.T01:intron 30.0%
CTGATATGAATTAGGATGTA+TGG + Chr1:99081789-99081808 MsG0180006030.01.T01:intron 30.0%
GTCTCATAAACAACAAAAGT+GGG - Chr1:99083546-99083565 None:intergenic 30.0%
GTTACTTCATACTTATAGGA+AGG - Chr1:99083056-99083075 None:intergenic 30.0%
TACTTTCTATGATTTCAAGC+TGG - Chr1:99083000-99083019 None:intergenic 30.0%
TATAAACAAACAGGGCTAAT+GGG - Chr1:99083874-99083893 None:intergenic 30.0%
TATATTTGATTGTCCTTTCC+TGG + Chr1:99084041-99084060 MsG0180006030.01.T01:CDS 30.0%
TATGGTGACAATAATTGGAA+AGG + Chr1:99083355-99083374 MsG0180006030.01.T01:intron 30.0%
TCTCAAGTTTAACATGCATA+TGG + Chr1:99083337-99083356 MsG0180006030.01.T01:intron 30.0%
TGACAATAATTGGAAAGGTA+TGG + Chr1:99083360-99083379 MsG0180006030.01.T01:intron 30.0%
TGTCTCATAAACAACAAAAG+TGG - Chr1:99083547-99083566 None:intergenic 30.0%
TGTTATAAAGAAGCCAGAAT+TGG + Chr1:99083976-99083995 MsG0180006030.01.T01:CDS 30.0%
TTGTCAATCTGATATTTGGT+AGG + Chr1:99082808-99082827 MsG0180006030.01.T01:intron 30.0%
! AATTGGAAAGGTATGGTAAT+TGG + Chr1:99083367-99083386 MsG0180006030.01.T01:intron 30.0%
! AGTGCATTGATAATCAAGTT+TGG - Chr1:99083914-99083933 None:intergenic 30.0%
! ATTGGATGGATTTCTATCAT+TGG + Chr1:99083385-99083404 MsG0180006030.01.T01:intron 30.0%
! ATTTTGCTACGAGAGTTTTA+AGG - Chr1:99081557-99081576 None:intergenic 30.0%
! GTTTCTCTTATTGTTTTCCT+AGG - Chr1:99082629-99082648 None:intergenic 30.0%
! TGTCACATACTGTTGTTTAA+AGG + Chr1:99081425-99081444 MsG0180006030.01.T01:intron 30.0%
! TTGGATGGATTTCTATCATT+GGG + Chr1:99083386-99083405 MsG0180006030.01.T01:intron 30.0%
!! CTATCATAGAGATTGTTTTG+AGG - Chr1:99082090-99082109 None:intergenic 30.0%
!! GAAATTAGAAATGGCTTTGA+AGG - Chr1:99080780-99080799 None:intergenic 30.0%
!!! TTGAGTTTTTTCAGGCAATA+TGG - Chr1:99083173-99083192 None:intergenic 30.0%
!!! TTTTTTCAGGCAATATGGAT+CGG - Chr1:99083168-99083187 None:intergenic 30.0%
AAAGAAGCCAGAATTGGATT+TGG + Chr1:99083982-99084001 MsG0180006030.01.T01:CDS 35.0%
AAATATCAAAAGCGACAGTG+TGG - Chr1:99081923-99081942 None:intergenic 35.0%
AAGAAGCCAGAATTGGATTT+GGG + Chr1:99083983-99084002 MsG0180006030.01.T01:CDS 35.0%
AGCACGACTTCATAAATAGT+GGG - Chr1:99081501-99081520 None:intergenic 35.0%
AGGAAAGGAATGTACAAACA+AGG - Chr1:99081537-99081556 None:intergenic 35.0%
AGTAAGGAGAGTAGATCAAA+TGG + Chr1:99082571-99082590 MsG0180006030.01.T01:intron 35.0%
ATAAACAAACAGGGCTAATG+GGG - Chr1:99083873-99083892 None:intergenic 35.0%
ATATTTGGTAGGTGTCAGTT+GGG + Chr1:99082819-99082838 MsG0180006030.01.T01:intron 35.0%
ATGATGTAGTGAAGAACAGA+GGG + Chr1:99082886-99082905 MsG0180006030.01.T01:intron 35.0%
CACATTGTGATGTGTAGAAA+CGG - Chr1:99080893-99080912 None:intergenic 35.0%
CTACACTTGAGGTAACTTTA+TGG - Chr1:99081607-99081626 None:intergenic 35.0%
CTCCTTACTACTGAATTCAT+AGG - Chr1:99082560-99082579 None:intergenic 35.0%
CTTAACCCTTCAAAGCTAAA+AGG - Chr1:99081996-99082015 None:intergenic 35.0%
GAATGTACAAACAAGGACAA+TGG - Chr1:99081530-99081549 None:intergenic 35.0%
GACCTATGAATTCAGTAGTA+AGG + Chr1:99082555-99082574 MsG0180006030.01.T01:intron 35.0%
GATAAAGCAAACTACACTTG+AGG - Chr1:99081618-99081637 None:intergenic 35.0%
GATTGTGACGAAATCCATAA+TGG - Chr1:99080859-99080878 None:intergenic 35.0%
GATTTCTATCATTGGGACTA+AGG + Chr1:99083393-99083412 MsG0180006030.01.T01:intron 35.0%
GCTAAAAGGCTTCAAAACTA+TGG - Chr1:99081982-99082001 None:intergenic 35.0%
GTCTTCACATATTGTGTTAC+CGG - Chr1:99082538-99082557 None:intergenic 35.0%
TATGATGTAGTGAAGAACAG+AGG + Chr1:99082885-99082904 MsG0180006030.01.T01:intron 35.0%
TATTCGTGTCATGAATTCTC+AGG + Chr1:99082305-99082324 MsG0180006030.01.T01:intron 35.0%
TCGTGAAAGTGGTCTAAATA+TGG + Chr1:99081839-99081858 MsG0180006030.01.T01:intron 35.0%
TGCAATGACTTCAACCAAAT+CGG - Chr1:99080984-99081003 None:intergenic 35.0%
TGCCTGAAAAAACTCAAACT+TGG + Chr1:99083176-99083195 MsG0180006030.01.T01:intron 35.0%
TGGCTGGAAAAATACAACTT+AGG - Chr1:99081815-99081834 None:intergenic 35.0%
TTGGTTGAAGTCATTGCAAT+TGG + Chr1:99080986-99081005 MsG0180006030.01.T01:CDS 35.0%
! AAGAAGCACAATTACAACAG+AGG + Chr1:99081185-99081204 MsG0180006030.01.T01:CDS 35.0%
! TCTCAGGTAAAAGCTTTGAT+GGG + Chr1:99082321-99082340 MsG0180006030.01.T01:intron 35.0%
! TTCTCAGGTAAAAGCTTTGA+TGG + Chr1:99082320-99082339 MsG0180006030.01.T01:intron 35.0%
!! TGAATCTGTATTCTGGTTTG+AGG - Chr1:99081303-99081322 None:intergenic 35.0%
!!! GCTCAATGTCTTTTTTTGTC+CGG + Chr1:99082516-99082535 MsG0180006030.01.T01:intron 35.0%
!!! GTCCAAGTTTGAGTTTTTTC+AGG - Chr1:99083181-99083200 None:intergenic 35.0%
!!! TGAAGCCTTTTAGCTTTGAA+GGG + Chr1:99081988-99082007 MsG0180006030.01.T01:CDS 35.0%
!!! TGCTGTTTTGCTAGCTATTA+TGG + Chr1:99083638-99083657 MsG0180006030.01.T01:CDS 35.0%
!!! TTGAAGCCTTTTAGCTTTGA+AGG + Chr1:99081987-99082006 MsG0180006030.01.T01:CDS 35.0%
AAAGGCTGTCGTATCATGTT+TGG + Chr1:99082456-99082475 MsG0180006030.01.T01:intron 40.0%
AAGGAGAGTAGATCAAATGG+AGG + Chr1:99082574-99082593 MsG0180006030.01.T01:intron 40.0%
AGAAGAAGCGAAATCCGATT+TGG + Chr1:99080967-99080986 MsG0180006030.01.T01:CDS 40.0%
AGAAGCCAGAATTGGATTTG+GGG + Chr1:99083984-99084003 MsG0180006030.01.T01:CDS 40.0%
AGCCACCTAAGGAAGAAAAA+CGG - Chr1:99081880-99081899 None:intergenic 40.0%
AGGAGAGTAGATCAAATGGA+GGG + Chr1:99082575-99082594 MsG0180006030.01.T01:intron 40.0%
AGGGTTAAGACGAAAAGATG+AGG + Chr1:99082007-99082026 MsG0180006030.01.T01:CDS 40.0%
ATACCTTCAAAGAAACACCC+AGG - Chr1:99084062-99084081 None:intergenic 40.0%
CAACAGAGGTCTACTAAACA+AGG + Chr1:99081199-99081218 MsG0180006030.01.T01:CDS 40.0%
GAAAAACGGGGAATAACCAA+AGG - Chr1:99081866-99081885 None:intergenic 40.0%
GAAACTGTAAGGTCCACAAA+CGG + Chr1:99081945-99081964 MsG0180006030.01.T01:CDS 40.0%
GACAAACTTCCATTGTCCAA+CGG + Chr1:99080920-99080939 MsG0180006030.01.T01:CDS 40.0%
GAGCACGACTTCATAAATAG+TGG - Chr1:99081502-99081521 None:intergenic 40.0%
GATATTTGGTAGGTGTCAGT+TGG + Chr1:99082818-99082837 MsG0180006030.01.T01:intron 40.0%
GCACGACTTCATAAATAGTG+GGG - Chr1:99081500-99081519 None:intergenic 40.0%
GTGGTCTAAATATGGACCTT+TGG + Chr1:99081847-99081866 MsG0180006030.01.T01:intron 40.0%
GTTGAAGTCATTGCAATTGG+CGG + Chr1:99080989-99081008 MsG0180006030.01.T01:CDS 40.0%
GTTGATGTTCTCTTTGTGAC+AGG + Chr1:99081140-99081159 MsG0180006030.01.T01:intron 40.0%
TACAACAACGCAACGCTAAA+TGG + Chr1:99080733-99080752 MsG0180006030.01.T01:exon 40.0%
TAGACCACTTTCACGAATCA+TGG - Chr1:99081835-99081854 None:intergenic 40.0%
TCTACACATCACAATGTGCA+CGG + Chr1:99080895-99080914 MsG0180006030.01.T01:CDS 40.0%
TTCAAAGAAACACCCAGGAA+AGG - Chr1:99084057-99084076 None:intergenic 40.0%
TTTCCTGGGTGTTTCTTTGA+AGG + Chr1:99084056-99084075 MsG0180006030.01.T01:CDS 40.0%
! AGCTTTGATGGGGAAACTTA+AGG + Chr1:99082332-99082351 MsG0180006030.01.T01:CDS 40.0%
! CTCAGGTAAAAGCTTTGATG+GGG + Chr1:99082322-99082341 MsG0180006030.01.T01:intron 40.0%
! CTTAGGCATGCATGACTTTT+TGG + Chr1:99081743-99081762 MsG0180006030.01.T01:intron 40.0%
! GGAAAGGTATGGTAATTGGA+TGG + Chr1:99083371-99083390 MsG0180006030.01.T01:intron 40.0%
! TCGGAGTTCTTTTGTATGTG+TGG - Chr1:99083149-99083168 None:intergenic 40.0%
! TTTTTGCATTACAAGCAGCG+TGG - Chr1:99083296-99083315 None:intergenic 40.0%
!! AGAAATGGCTTTGAAGGTTG+TGG - Chr1:99080774-99080793 None:intergenic 40.0%
!! AGACTTGTTGACTCTAGATG+AGG + Chr1:99083596-99083615 MsG0180006030.01.T01:CDS 40.0%
!! ATTCCCCGTTTTTCTTCCTT+AGG + Chr1:99081872-99081891 MsG0180006030.01.T01:intron 40.0%
!! GAAATGGCTTTGAAGGTTGT+GGG - Chr1:99080773-99080792 None:intergenic 40.0%
!!! GCTACGAGAGTTTTAAGGAA+AGG - Chr1:99081552-99081571 None:intergenic 40.0%
CATTGCAATTGGCGGTAGAA+AGG + Chr1:99080997-99081016 MsG0180006030.01.T01:CDS 45.0%
CCACCTAAGGAAGAAAAACG+GGG - Chr1:99081878-99081897 None:intergenic 45.0%
CTAGAGGTAGATGAAGACCT+AGG + Chr1:99082609-99082628 MsG0180006030.01.T01:intron 45.0%
CTTATTCCACTAAGTGGGGT+CGG - Chr1:99082735-99082754 None:intergenic 45.0%
CTTCTTCGTCACTGCCATTA+TGG + Chr1:99080842-99080861 MsG0180006030.01.T01:CDS 45.0%
GCCACCTAAGGAAGAAAAAC+GGG - Chr1:99081879-99081898 None:intergenic 45.0%
GGAGAGTAGATCAAATGGAG+GGG + Chr1:99082576-99082595 MsG0180006030.01.T01:intron 45.0%
TACAGCGGCGGAATTGATAT+CGG + Chr1:99080944-99080963 MsG0180006030.01.T01:CDS 45.0%
TCTATCATTGGGACTAAGGG+TGG + Chr1:99083397-99083416 MsG0180006030.01.T01:intron 45.0%
TTTGGCTGTGCTAAGTCTGA+AGG + Chr1:99082474-99082493 MsG0180006030.01.T01:intron 45.0%
! ACGCCTTATTCCACTAAGTG+GGG - Chr1:99082739-99082758 None:intergenic 45.0%
! CACGCCTTATTCCACTAAGT+GGG - Chr1:99082740-99082759 None:intergenic 45.0%
! CTTGTTAGTCTCATGGCCAT+GGG + Chr1:99082842-99082861 MsG0180006030.01.T01:intron 45.0%
! CTTTTGTATGTGTGGCATGC+AGG - Chr1:99083141-99083160 None:intergenic 45.0%
! GTTTTTCTTCCTTAGGTGGC+TGG + Chr1:99081879-99081898 MsG0180006030.01.T01:intron 45.0%
!! AGGTGAAGCTTGCTGATGTT+TGG + Chr1:99082494-99082513 MsG0180006030.01.T01:intron 45.0%
!! AGTTGGGCTTGTTAGTCTCA+TGG + Chr1:99082835-99082854 MsG0180006030.01.T01:intron 45.0%
ACACATCACAATGTGCACGG+AGG + Chr1:99080898-99080917 MsG0180006030.01.T01:CDS 50.0%
AGCAGCCCCAAATCCAATTC+TGG - Chr1:99083992-99084011 None:intergenic 50.0%
CCACTTAGTGGAATAAGGCG+TGG + Chr1:99082738-99082757 MsG0180006030.01.T01:intron 50.0%
CCACTTTCACGAATCATGGC+TGG - Chr1:99081831-99081850 None:intergenic 50.0%
CCAGCCATGATTCGTGAAAG+TGG + Chr1:99081828-99081847 MsG0180006030.01.T01:intron 50.0%
CCATTGTCCAACGGTTACAG+CGG + Chr1:99080929-99080948 MsG0180006030.01.T01:CDS 50.0%
CGACCCCACTTAGTGGAATA+AGG + Chr1:99082733-99082752 MsG0180006030.01.T01:intron 50.0%
CGCAGAGAAGACAGCTGAAA+TGG - Chr1:99081052-99081071 None:intergenic 50.0%
GAGGGGAGTCAAATCACTAG+AGG + Chr1:99082593-99082612 MsG0180006030.01.T01:intron 50.0%
GGCAATTGTGAGTCCGTTTG+TGG - Chr1:99081961-99081980 None:intergenic 50.0%
TGCATTACAAGCAGCGTGGT+TGG - Chr1:99083292-99083311 None:intergenic 50.0%
! AGCTGTCTTCTCTGCGCTTT+TGG + Chr1:99081056-99081075 MsG0180006030.01.T01:CDS 50.0%
! CCACGCCTTATTCCACTAAG+TGG - Chr1:99082741-99082760 None:intergenic 50.0%
! GCTTGTTAGTCTCATGGCCA+TGG + Chr1:99082841-99082860 MsG0180006030.01.T01:intron 50.0%
!! CCCCGTTTTTCTTCCTTAGG+TGG + Chr1:99081875-99081894 MsG0180006030.01.T01:intron 50.0%
AATTCCGCCGCTGTAACCGT+TGG - Chr1:99080939-99080958 None:intergenic 55.0%
ATCTCTGCAGAACCTTCCCC+AGG + Chr1:99081463-99081482 MsG0180006030.01.T01:intron 55.0%
ATGGCCATGGGTCTGGACTA+TGG + Chr1:99082854-99082873 MsG0180006030.01.T01:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG + Chr1:99082726-99082745 MsG0180006030.01.T01:intron 55.0%
CACTCCATAGTCCAGACCCA+TGG - Chr1:99082861-99082880 None:intergenic 55.0%
CCGCTGTAACCGTTGGACAA+TGG - Chr1:99080932-99080951 None:intergenic 55.0%
CTAAGGGTGGTTGCTGGAAG+TGG + Chr1:99083410-99083429 MsG0180006030.01.T01:intron 55.0%
GCTTTGACGATTCCTGGGGA+AGG - Chr1:99081478-99081497 None:intergenic 55.0%
TAGGTGGCTGGTGCAGGATA+TGG + Chr1:99081891-99081910 MsG0180006030.01.T01:intron 55.0%
TAGTCTCATGGCCATGGGTC+TGG + Chr1:99082847-99082866 MsG0180006030.01.T01:intron 55.0%
TATCCTGCACCAGCCACCTA+AGG - Chr1:99081891-99081910 None:intergenic 55.0%
TTGGGACTAAGGGTGGTTGC+TGG + Chr1:99083404-99083423 MsG0180006030.01.T01:intron 55.0%
TTGTCCAACGGTTACAGCGG+CGG + Chr1:99080932-99080951 MsG0180006030.01.T01:CDS 55.0%
! AGTGGGGCTTTGACGATTCC+TGG - Chr1:99081484-99081503 None:intergenic 55.0%
! GTGGGGCTTTGACGATTCCT+GGG - Chr1:99081483-99081502 None:intergenic 55.0%
! TGGGGCTTTGACGATTCCTG+GGG - Chr1:99081482-99081501 None:intergenic 55.0%
CTTCCTTAGGTGGCTGGTGC+AGG + Chr1:99081885-99081904 MsG0180006030.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 99080732 99084110 99080732 ID=MsG0180006030.01;Name=MsG0180006030.01
Chr1 mRNA 99080732 99084110 99080732 ID=MsG0180006030.01.T01;Parent=MsG0180006030.01;Name=MsG0180006030.01.T01;_AED=0.44;_eAED=0.46;_QI=20|0.71|0.62|1|0.71|0.62|8|0|341
Chr1 exon 99080732 99081077 99080732 ID=MsG0180006030.01.T01:exon:19776;Parent=MsG0180006030.01.T01
Chr1 exon 99081162 99081254 99081162 ID=MsG0180006030.01.T01:exon:19777;Parent=MsG0180006030.01.T01
Chr1 exon 99081473 99081566 99081473 ID=MsG0180006030.01.T01:exon:19778;Parent=MsG0180006030.01.T01
Chr1 exon 99081894 99082028 99081894 ID=MsG0180006030.01.T01:exon:19779;Parent=MsG0180006030.01.T01
Chr1 exon 99082327 99082375 99082327 ID=MsG0180006030.01.T01:exon:19780;Parent=MsG0180006030.01.T01
Chr1 exon 99083568 99083680 99083568 ID=MsG0180006030.01.T01:exon:19781;Parent=MsG0180006030.01.T01
Chr1 exon 99083769 99083840 99083769 ID=MsG0180006030.01.T01:exon:19782;Parent=MsG0180006030.01.T01
Chr1 exon 99083967 99084110 99083967 ID=MsG0180006030.01.T01:exon:19783;Parent=MsG0180006030.01.T01
Chr1 five_prime_UTR 99080732 99080751 99080732 ID=MsG0180006030.01.T01:five_prime_utr;Parent=MsG0180006030.01.T01
Chr1 CDS 99080752 99081077 99080752 ID=MsG0180006030.01.T01:cds;Parent=MsG0180006030.01.T01
Chr1 CDS 99081162 99081254 99081162 ID=MsG0180006030.01.T01:cds;Parent=MsG0180006030.01.T01
Chr1 CDS 99081473 99081566 99081473 ID=MsG0180006030.01.T01:cds;Parent=MsG0180006030.01.T01
Chr1 CDS 99081894 99082028 99081894 ID=MsG0180006030.01.T01:cds;Parent=MsG0180006030.01.T01
Chr1 CDS 99082327 99082375 99082327 ID=MsG0180006030.01.T01:cds;Parent=MsG0180006030.01.T01
Chr1 CDS 99083568 99083680 99083568 ID=MsG0180006030.01.T01:cds;Parent=MsG0180006030.01.T01
Chr1 CDS 99083769 99083840 99083769 ID=MsG0180006030.01.T01:cds;Parent=MsG0180006030.01.T01
Chr1 CDS 99083967 99084110 99083967 ID=MsG0180006030.01.T01:cds;Parent=MsG0180006030.01.T01
Gene Sequence

>MsG0180006030.01.T01

ATGGAGCTTACTGCACATCCCACAACCTTCAAAGCCATTTCTAATTTCACCTTGAATCAATTTCAATTTCAATGTCGATGTTCTCTTTCTCTTCTTCGTCACTGCCATTATGGATTTCGTCACAATCGCAATTCAAAACCGTTTCTACACATCACAATGTGCACGGAGGACAAACTTCCATTGTCCAACGGTTACAGCGGCGGAATTGATATCGGAGAAGAAGCGAAATCCGATTTGGTTGAAGTCATTGCAATTGGCGGTAGAAAGGACGCTGTTATTGATTTCTGCTTGAATTCTCCATTTCAGCTGTCTTCTCTGCGCTTTTGGAATATCATTGTGAAAGATTCACAAGAAGCACAATTACAACAGAGGTCTACTAAACAAGGTTTGCATCTCATTTCTATGATTCTTCTTCGCTTAACCTTCCCCAGGAATCGTCAAAGCCCCACTATTTATGAAGTCGTGCTCAAAGACCATTGTCCTTGTTTGTACATTCCTTTCCTTAAAACTCTCGTGGCTGGTGCAGGATATGGATCAGACCACACTGTCGCTTTTGATATTTTTGAAACTGTAAGGTCCACAAACGGACTCACAATTGCCATAGTTTTGAAGCCTTTTAGCTTTGAAGGGTTAAGACGAAAAGATGAGGTAAAAGCTTTGATGGGGAAACTTAAGGAGAATACTAATTTACTTATTGAAATTGATATCGACGCACTTCTCAAAAAAGACTTGTTGACTCTAGATGAGGCTATGAAGATTGCAAATGATGCTGTTTTGCTAGCTATTATGGCCATATCTGTTCTAAAATCTGAAATGCACAGAAAATATATAGATAGATTGCATAATAGCATGAAAGAAACCTGCAATTCAGAAATTATTAAAATATTGGAGTGTTATAAAGAAGCCAGAATTGGATTTGGGGCTGCTTATAATATCAAAACTTCAATTTTGCAGTCTATATTTGATTGTCCTTTCCTGGGTGTTTCTTTGAAGGTATCGCCTAGCTTAAATTTTCACACTTTTTAG

Protein sequence

>MsG0180006030.01.T01

MELTAHPTTFKAISNFTLNQFQFQCRCSLSLLRHCHYGFRHNRNSKPFLHITMCTEDKLPLSNGYSGGIDIGEEAKSDLVEVIAIGGRKDAVIDFCLNSPFQLSSLRFWNIIVKDSQEAQLQQRSTKQGLHLISMILLRLTFPRNRQSPTIYEVVLKDHCPCLYIPFLKTLVAGAGYGSDHTVAFDIFETVRSTNGLTIAIVLKPFSFEGLRRKDEVKALMGKLKENTNLLIEIDIDALLKKDLLTLDEAMKIANDAVLLAIMAISVLKSEMHRKYIDRLHNSMKETCNSEIIKILECYKEARIGFGAAYNIKTSILQSIFDCPFLGVSLKVSPSLNFHTF*