AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021803.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021803.01.T01 MTR_4g076600 98.916 369 4 0 1 369 1 369 0.0 743
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021803.01.T01 AT5G08280 80.352 341 56 2 37 369 45 382 0.0 561

Find 115 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTAAAACTTCACTATTTC+AGG 0.139531 4:-64465702 None:intergenic
ATTGCAATTGGCAATGTAAT+TGG 0.182846 4:+64462613 MsG0480021803.01.T01:five_prime_UTR
CAATAGGTGGTTCTGGATTC+TGG 0.184578 4:+64465747 MsG0480021803.01.T01:three_prime_UTR
ATAGATGAAGCACTCATAAA+TGG 0.266891 4:+64463896 MsG0480021803.01.T01:CDS
CTACCGGCTGGAAGTGTTAT+TGG 0.289880 4:+64464055 MsG0480021803.01.T01:CDS
AATTCTAATAATCGCAGTTT+TGG 0.297866 4:-64462964 None:intergenic
GAAATTTCAATAGGTGGTTC+TGG 0.300079 4:+64465740 MsG0480021803.01.T01:three_prime_UTR
GGTTGTCAAAGCTACCTTAT+TGG 0.316380 4:+64464650 MsG0480021803.01.T01:CDS
CTGATACGACATTTGGAAAA+AGG 0.322162 4:-64462906 None:intergenic
TCTTGCCGAACGCCTATTGC+AGG 0.323184 4:+64465223 MsG0480021803.01.T01:CDS
GGCTATTCCAATTGCACCTT+GGG 0.335647 4:-64464754 None:intergenic
GATGGAAATTGCTTGTTTAG+AGG 0.343657 4:+64465265 MsG0480021803.01.T01:CDS
GAAGGATTGGAAGGTGTAGA+AGG 0.351735 4:-64462834 None:intergenic
GTGCTTGAAACTTCCAGAAT+TGG 0.358982 4:+64465404 MsG0480021803.01.T01:intron
AGTGTTGAAACTTATAATCT+AGG 0.369974 4:-64465521 None:intergenic
CAGTCCAGCTAGAGCCAATA+AGG 0.371368 4:-64464664 None:intergenic
TAGAAGTAATGATGATAAAA+TGG 0.372536 4:+64464779 MsG0480021803.01.T01:CDS
AAAACTGCGATTATTAGAAT+TGG 0.380075 4:+64462966 MsG0480021803.01.T01:CDS
CTTCTTTCTCGAGCTGGACC+TGG 0.382803 4:+64465479 MsG0480021803.01.T01:CDS
ATAAGCATAAGGACCAATTC+TGG 0.397488 4:-64465417 None:intergenic
CTCAATCGGTAGCACAGATA+TGG 0.400067 4:+64465542 MsG0480021803.01.T01:three_prime_UTR
GAGAAGGAAAGGGGAAGGAT+TGG 0.401621 4:-64462847 None:intergenic
CTTAACACGGAAATTTCAAT+AGG 0.404152 4:+64465731 MsG0480021803.01.T01:three_prime_UTR
TTTCAACTGAACTCCTCATC+AGG 0.407221 4:+64465619 MsG0480021803.01.T01:three_prime_UTR
TTAGAGCAGTCCACTAGCTT+TGG 0.407368 4:+64463718 MsG0480021803.01.T01:intron
TTTATCATCATTACTTCTAC+AGG 0.410377 4:-64464775 None:intergenic
TTGCAATTGGCAATGTAATT+GGG 0.414516 4:+64462614 MsG0480021803.01.T01:five_prime_UTR
AAGAGCCTTCCTTACGACTT+TGG 0.415933 4:+64465195 MsG0480021803.01.T01:CDS
GCTGTTGCCCAAGGTGCAAT+TGG 0.417047 4:+64464747 MsG0480021803.01.T01:CDS
TAGATGAAGCACTCATAAAT+GGG 0.423935 4:+64463897 MsG0480021803.01.T01:CDS
CTGCTAGCATACCCTGCAAT+AGG 0.427411 4:-64465235 None:intergenic
TTCATACCACGGGTTCCATC+GGG 0.433712 4:-64465301 None:intergenic
TTGAAATTTCCGTGTTAAGC+AGG 0.434990 4:-64465727 None:intergenic
GGAAGCTCTGATACGACATT+TGG 0.445537 4:-64462913 None:intergenic
TGAACTATTTCACACTCAAA+TGG 0.448638 4:+64462776 MsG0480021803.01.T01:exon
ACATATAATAAGATTGCAAT+TGG 0.449693 4:+64462601 MsG0480021803.01.T01:five_prime_UTR
AGAATGCAGAAGAGGAAGAA+AGG 0.466442 4:-64462806 None:intergenic
AATCTGAATAGCCCCTTCTT+CGG 0.467642 4:-64463792 None:intergenic
GAGGAGCTTCTTTCTCGAGC+TGG 0.476446 4:+64465473 MsG0480021803.01.T01:CDS
CATACAGAGTTAGCCGAAGA+AGG 0.479546 4:+64463779 MsG0480021803.01.T01:CDS
ATCATATCTTCATAAGCATA+AGG 0.480067 4:-64465428 None:intergenic
GCCTTCCTTACGACTTTGGA+TGG 0.480690 4:+64465199 MsG0480021803.01.T01:CDS
ATTGCACCTTGGGCAACAGC+TGG 0.489725 4:-64464744 None:intergenic
GTTCATACCACGGGTTCCAT+CGG 0.490215 4:-64465302 None:intergenic
GAATGCAGAAGAGGAAGAAA+GGG 0.492559 4:-64462805 None:intergenic
TATAAGTTTCAACACTCAAT+CGG 0.497032 4:+64465528 MsG0480021803.01.T01:three_prime_UTR
GATGGGTAAGGATGCGGGTG+AGG 0.498552 4:+64465454 MsG0480021803.01.T01:CDS
GCTACCTTATTGGCTCTAGC+TGG 0.499498 4:+64464660 MsG0480021803.01.T01:CDS
ATGAAGATGGGTAAGGATGC+GGG 0.500619 4:+64465449 MsG0480021803.01.T01:CDS
CAAGAAGAACTGAGAAGGAA+AGG 0.502363 4:-64462858 None:intergenic
AAGAAGAACTGAGAAGGAAA+GGG 0.502979 4:-64462857 None:intergenic
AGGAAGAGAGAATGCAGAAG+AGG 0.515566 4:-64462814 None:intergenic
ATTGGCAATGTAATTGGGTA+AGG 0.515612 4:+64462619 MsG0480021803.01.T01:five_prime_UTR
AGGAAAGGGGAAGGATTGGA+AGG 0.521629 4:-64462843 None:intergenic
ATCTCTAAGATAGAGCTTGT+GGG 0.525074 4:-64462647 None:intergenic
TCCTCTCGTGGAAGGTTGCA+TGG 0.526187 4:-64463986 None:intergenic
AGGCTATTCCAATTGCACCT+TGG 0.526245 4:-64464755 None:intergenic
AACACGGAAATTTCAATAGG+TGG 0.527729 4:+64465734 MsG0480021803.01.T01:three_prime_UTR
CGTAAGGAAGGCTCTTTCAC+AGG 0.530222 4:-64465188 None:intergenic
GATCTCTAAGATAGAGCTTG+TGG 0.534871 4:-64462648 None:intergenic
GAACTGAGAAGGAAAGGGGA+AGG 0.541355 4:-64462852 None:intergenic
CTGATCCTGAGGGAATCAAA+AGG 0.548067 4:+64465903 MsG0480021803.01.T01:three_prime_UTR
TCCGTGGAAATGTGCAAACA+AGG 0.548138 4:+64464607 MsG0480021803.01.T01:CDS
CTCTGACATCCTCTCGTGGA+AGG 0.548713 4:-64463994 None:intergenic
TCACTAGGTGATCTACCGGC+TGG 0.549656 4:+64464043 MsG0480021803.01.T01:CDS
TCGCAACCGCTTGCAGACAT+AGG 0.549665 4:+64463848 MsG0480021803.01.T01:CDS
GCCTTGTTTGCACATTTCCA+CGG 0.551589 4:-64464608 None:intergenic
TTAGAATTGGTACTAGAGGA+AGG 0.555106 4:+64462979 MsG0480021803.01.T01:CDS
GCAACAATTAAAATATATGT+TGG 0.555727 4:+64465779 MsG0480021803.01.T01:three_prime_UTR
ATACAGAGTTAGCCGAAGAA+GGG 0.556716 4:+64463780 MsG0480021803.01.T01:CDS
AGCTTCACTAGGTGATCTAC+CGG 0.558112 4:+64464039 MsG0480021803.01.T01:CDS
GATGAAGATGGGTAAGGATG+CGG 0.558385 4:+64465448 MsG0480021803.01.T01:CDS
CATACCCTGCAATAGGCGTT+CGG 0.559656 4:-64465228 None:intergenic
CAGTCCACTAGCTTTGGCTC+AGG 0.560597 4:+64463724 MsG0480021803.01.T01:intron
CAACCGCTTGCAGACATAGG+TGG 0.565596 4:+64463851 MsG0480021803.01.T01:CDS
TATGAAGATATGATGAAGAT+GGG 0.569266 4:+64465437 MsG0480021803.01.T01:CDS
CACCAGCTTACACTTAGAGA+TGG 0.571883 4:-64464121 None:intergenic
GCCATGCAACCTTCCACGAG+AGG 0.571886 4:+64463985 MsG0480021803.01.T01:CDS
CAATTTGAAGCTGATCCTGA+GGG 0.572609 4:+64465893 MsG0480021803.01.T01:three_prime_UTR
GCAATGTAATTGGGTAAGGT+AGG 0.575938 4:+64462623 MsG0480021803.01.T01:five_prime_UTR
TGTGCCTGAGCCAAAGCTAG+TGG 0.577115 4:-64463728 None:intergenic
ACCATCCAAAGTCGTAAGGA+AGG 0.584751 4:-64465200 None:intergenic
ATTATTAGAATTGGTACTAG+AGG 0.585168 4:+64462975 MsG0480021803.01.T01:CDS
TTTAGAATTCCTGCTTAACA+CGG 0.586071 4:+64465718 MsG0480021803.01.T01:three_prime_UTR
AACCGCTTGCAGACATAGGT+GGG 0.586462 4:+64463852 MsG0480021803.01.T01:CDS
AAGAACCATCCAAAGTCGTA+AGG 0.589630 4:-64465204 None:intergenic
TTATGAAGATATGATGAAGA+TGG 0.590771 4:+64465436 MsG0480021803.01.T01:CDS
GCTTGCAGACATAGGTGGGA+AGG 0.591309 4:+64463856 MsG0480021803.01.T01:CDS
TCATTGAGTGCAGCTTCACT+AGG 0.592878 4:+64464028 MsG0480021803.01.T01:CDS
CTTGCCGAACGCCTATTGCA+GGG 0.597053 4:+64465224 MsG0480021803.01.T01:CDS
TCAATTTGAAGCTGATCCTG+AGG 0.597348 4:+64465892 MsG0480021803.01.T01:three_prime_UTR
CGTCTGTTGCTCAACAGCAA+CGG 0.602185 4:-64462934 None:intergenic
AGGCTTAGAAAACTAAGTGA+GGG 0.602676 4:+64464627 MsG0480021803.01.T01:CDS
ATGCTTCCAGCTGTTGCCCA+AGG 0.607443 4:+64464738 MsG0480021803.01.T01:CDS
AGGGACAAGAAGAACTGAGA+AGG 0.608902 4:-64462863 None:intergenic
GGCTTAGAAAACTAAGTGAG+GGG 0.614093 4:+64464628 MsG0480021803.01.T01:CDS
AGATATGATGAAGATGGGTA+AGG 0.614306 4:+64465442 MsG0480021803.01.T01:CDS
GCATCTCTGACATCCTCTCG+TGG 0.614964 4:-64463998 None:intergenic
TTCCCACCTATGTCTGCAAG+CGG 0.617157 4:-64463854 None:intergenic
CACTTAGAGATGGATATCTG+TGG 0.621615 4:-64464111 None:intergenic
AGAAGAACTGAGAAGGAAAG+GGG 0.621960 4:-64462856 None:intergenic
TACAGAGTTAGCCGAAGAAG+GGG 0.622163 4:+64463781 MsG0480021803.01.T01:CDS
CTTGCAGACATAGGTGGGAA+GGG 0.623209 4:+64463857 MsG0480021803.01.T01:CDS
CATACCACGGGTTCCATCGG+GGG 0.623605 4:-64465299 None:intergenic
AAGGCTTAGAAAACTAAGTG+AGG 0.637139 4:+64464626 MsG0480021803.01.T01:CDS
ACAACAATTTGATCCTGATG+AGG 0.645416 4:-64465632 None:intergenic
CAGGTGCAAGATAATTTCCG+TGG 0.647977 4:+64464591 MsG0480021803.01.T01:intron
AGGGTATGCTAGCAGAGACA+AGG 0.654347 4:+64465243 MsG0480021803.01.T01:CDS
ATCGGTAGCACAGATATGGT+AGG 0.654402 4:+64465546 MsG0480021803.01.T01:three_prime_UTR
TATGCTAGCAGAGACAAGGA+TGG 0.659151 4:+64465247 MsG0480021803.01.T01:CDS
AGATGAAGCACTCATAAATG+GGG 0.661644 4:+64463898 MsG0480021803.01.T01:CDS
TTAGAGATGGATATCTGTGG+AGG 0.669578 4:-64464108 None:intergenic
TCATACCACGGGTTCCATCG+GGG 0.679110 4:-64465300 None:intergenic
GCTTAGAAAACTAAGTGAGG+GGG 0.696029 4:+64464629 MsG0480021803.01.T01:CDS
GTACCAATAACACTTCCAGC+CGG 0.706296 4:-64464058 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATAAATATTACAAAAATT+TGG - Chr4:64465680-64465699 None:intergenic 10.0%
!! GAATAAAAATCAATAATAAT+CGG - Chr4:64464553-64464572 None:intergenic 10.0%
!! AATATAAATTCTCAGATATT+GGG - Chr4:64465003-64465022 None:intergenic 15.0%
!! AATCATTTAACTAATAGTAT+GGG - Chr4:64463654-64463673 None:intergenic 15.0%
!! ATTGTAATAATAAAAACAAC+CGG + Chr4:64463812-64463831 MsG0480021803.01.T01:CDS 15.0%
!! TAAAACAAAATACTGATATA+TGG - Chr4:64463410-64463429 None:intergenic 15.0%
!! TAATCATTTAACTAATAGTA+TGG - Chr4:64463655-64463674 None:intergenic 15.0%
!!! AAATCATAATCATTTTCTAA+TGG + Chr4:64464195-64464214 MsG0480021803.01.T01:intron 15.0%
!!! AAATTTTGAAATTGCAAAAA+AGG + Chr4:64465857-64465876 MsG0480021803.01.T01:three_prime_UTR 15.0%
!!! AATCATAATCATTTTCTAAT+GGG + Chr4:64464196-64464215 MsG0480021803.01.T01:intron 15.0%
!!! AATTTTGAAATTGCAAAAAA+GGG + Chr4:64465858-64465877 MsG0480021803.01.T01:three_prime_UTR 15.0%
!!! TCAAATTGTTGTATTTTATT+AGG + Chr4:64465643-64465662 MsG0480021803.01.T01:three_prime_UTR 15.0%
!!! TTAGAAGATAATTTTAGAAA+GGG + Chr4:64463483-64463502 MsG0480021803.01.T01:intron 15.0%
!!! TTTGCAATTTCAAAATTTTT+AGG - Chr4:64465855-64465874 None:intergenic 15.0%
!!! TTTTTGGCATTTATTTTAAT+GGG + Chr4:64463222-64463241 MsG0480021803.01.T01:intron 15.0%
!!! TTTTTTGGCATTTATTTTAA+TGG + Chr4:64463221-64463240 MsG0480021803.01.T01:intron 15.0%
!! ACATATAATAAGATTGCAAT+TGG + Chr4:64462601-64462620 MsG0480021803.01.T01:five_prime_UTR 20.0%
!! ATAACAAAAGAAACCAAATA+TGG - Chr4:64463601-64463620 None:intergenic 20.0%
!! ATATAAATTCTCAGATATTG+GGG - Chr4:64465002-64465021 None:intergenic 20.0%
!! CAACTTATAATTATAATCTC+AGG + Chr4:64464572-64464591 MsG0480021803.01.T01:intron 20.0%
!! CAATATAAATTCTCAGATAT+TGG - Chr4:64465004-64465023 None:intergenic 20.0%
!! GCAACAATTAAAATATATGT+TGG + Chr4:64465779-64465798 MsG0480021803.01.T01:three_prime_UTR 20.0%
!! TAACAAAAGAAACCAAATAT+GGG - Chr4:64463600-64463619 None:intergenic 20.0%
!! TAGAAGTAATGATGATAAAA+TGG + Chr4:64464779-64464798 MsG0480021803.01.T01:CDS 20.0%
!! TAGACAATAGCTATATAAAA+AGG - Chr4:64464414-64464433 None:intergenic 20.0%
!! TATTAACTATTGAAAAAACC+AGG - Chr4:64465500-64465519 None:intergenic 20.0%
!! TTGAAAAAGAATAACAAACT+AGG - Chr4:64465605-64465624 None:intergenic 20.0%
!! TTGAGTTAATAAACAAACAT+TGG + Chr4:64464265-64464284 MsG0480021803.01.T01:intron 20.0%
!!! ATATTTGGTTTCTTTTGTTA+TGG + Chr4:64463600-64463619 MsG0480021803.01.T01:intron 20.0%
!!! ATCTGAAATATTTCAATTCA+AGG + Chr4:64465039-64465058 MsG0480021803.01.T01:intron 20.0%
!!! ATTATCAGAGCTTTTAAAAT+GGG + Chr4:64465573-64465592 MsG0480021803.01.T01:three_prime_UTR 20.0%
!!! ATTGTTATTGTCAAAAGAAA+AGG + Chr4:64463331-64463350 MsG0480021803.01.T01:intron 20.0%
!!! CTCAAATTTGCATTTTTTTT+TGG + Chr4:64463206-64463225 MsG0480021803.01.T01:intron 20.0%
!!! CTTAGAAGATAATTTTAGAA+AGG + Chr4:64463482-64463501 MsG0480021803.01.T01:intron 20.0%
!!! TATTATCAGAGCTTTTAAAA+TGG + Chr4:64465572-64465591 MsG0480021803.01.T01:three_prime_UTR 20.0%
!!! TTGTTATTGTCAAAAGAAAA+GGG + Chr4:64463332-64463351 MsG0480021803.01.T01:intron 20.0%
! AAAACTGCGATTATTAGAAT+TGG + Chr4:64462966-64462985 MsG0480021803.01.T01:CDS 25.0%
! AAGAAAATCAATCCCATATT+TGG + Chr4:64463585-64463604 MsG0480021803.01.T01:intron 25.0%
! AGAAGAAAAATAACGAAAGA+AGG - Chr4:64464452-64464471 None:intergenic 25.0%
! AGCATTTAATGCATTCATAA+TGG + Chr4:64464238-64464257 MsG0480021803.01.T01:intron 25.0%
! ATCATATCTTCATAAGCATA+AGG - Chr4:64465431-64465450 None:intergenic 25.0%
! ATTATGAATGCTTTCATTGT+TGG + Chr4:64463671-64463690 MsG0480021803.01.T01:intron 25.0%
! ATTATTAGAATTGGTACTAG+AGG + Chr4:64462975-64462994 MsG0480021803.01.T01:CDS 25.0%
! ATTTGACGAAAAAACCAATA+TGG - Chr4:64464179-64464198 None:intergenic 25.0%
! TAGGCAAGTTCATAAAATAT+AGG - Chr4:64464815-64464834 None:intergenic 25.0%
! TATAAGTTTCAACACTCAAT+CGG + Chr4:64465528-64465547 MsG0480021803.01.T01:three_prime_UTR 25.0%
! TATGAAGATATGATGAAGAT+GGG + Chr4:64465437-64465456 MsG0480021803.01.T01:CDS 25.0%
! TGTTATTGTCAAAAGAAAAG+GGG + Chr4:64463333-64463352 MsG0480021803.01.T01:intron 25.0%
! TTATGAAGATATGATGAAGA+TGG + Chr4:64465436-64465455 MsG0480021803.01.T01:CDS 25.0%
! TTTATCATCATTACTTCTAC+AGG - Chr4:64464778-64464797 None:intergenic 25.0%
!! AATTCTAATAATCGCAGTTT+TGG - Chr4:64462967-64462986 None:intergenic 25.0%
!! AGTGTTGAAACTTATAATCT+AGG - Chr4:64465524-64465543 None:intergenic 25.0%
!! GTTGTATTTTATTAGGTGAT+TGG + Chr4:64465650-64465669 MsG0480021803.01.T01:three_prime_UTR 25.0%
!!! CACTTTTGGTGTTTAAATTT+TGG + Chr4:64464854-64464873 MsG0480021803.01.T01:intron 25.0%
!!! CAGTTTAGTTTTACCATATT+TGG + Chr4:64465099-64465118 MsG0480021803.01.T01:intron 25.0%
!!! TGACTTTTTTTTATGCTTCT+GGG + Chr4:64463077-64463096 MsG0480021803.01.T01:intron 25.0%
!!! TTAGTTTTACCATATTTGGT+CGG + Chr4:64465103-64465122 MsG0480021803.01.T01:intron 25.0%
!!! TTCTAAAACTTCACTATTTC+AGG - Chr4:64465705-64465724 None:intergenic 25.0%
!!! TTGACTTTTTTTTATGCTTC+TGG + Chr4:64463076-64463095 MsG0480021803.01.T01:intron 25.0%
!!! TTTTCTGTCATTTAGCTTTA+TGG + Chr4:64464519-64464538 MsG0480021803.01.T01:intron 25.0%
AAAAATAACGAAAGAAGGCA+TGG - Chr4:64464447-64464466 None:intergenic 30.0%
AAGGTTAACTCTTAAAACAC+AGG - Chr4:64464395-64464414 None:intergenic 30.0%
ACCATTAACAACATGGATAA+TGG + Chr4:64464307-64464326 MsG0480021803.01.T01:intron 30.0%
ACCATTATCCATGTTGTTAA+TGG - Chr4:64464311-64464330 None:intergenic 30.0%
ATGCAAATTTGAGCTAAAGT+TGG - Chr4:64463199-64463218 None:intergenic 30.0%
ATTGCAATTGGCAATGTAAT+TGG + Chr4:64462613-64462632 MsG0480021803.01.T01:five_prime_UTR 30.0%
CTTAACACGGAAATTTCAAT+AGG + Chr4:64465731-64465750 MsG0480021803.01.T01:three_prime_UTR 30.0%
GTTTGATGTTTCATCATTCA+AGG + Chr4:64463378-64463397 MsG0480021803.01.T01:intron 30.0%
TCTGAGAATTTATATTGACG+AGG + Chr4:64465007-64465026 MsG0480021803.01.T01:intron 30.0%
TGAAATTGCAAAAAAGGGTT+TGG + Chr4:64465863-64465882 MsG0480021803.01.T01:three_prime_UTR 30.0%
TGAACTATTTCACACTCAAA+TGG + Chr4:64462776-64462795 MsG0480021803.01.T01:exon 30.0%
TTAAATGCTTGCAATCATCT+TGG + Chr4:64463523-64463542 MsG0480021803.01.T01:intron 30.0%
TTGACTATATTGTGAGCTAT+TGG + Chr4:64464888-64464907 MsG0480021803.01.T01:intron 30.0%
TTGCAATTGGCAATGTAATT+GGG + Chr4:64462614-64462633 MsG0480021803.01.T01:five_prime_UTR 30.0%
! AAAATAACGAAAGAAGGCAT+GGG - Chr4:64464446-64464465 None:intergenic 30.0%
! ACTGCTCTAAATGTAAACAT+AGG - Chr4:64463708-64463727 None:intergenic 30.0%
! ATAGATGAAGCACTCATAAA+TGG + Chr4:64463896-64463915 MsG0480021803.01.T01:CDS 30.0%
! ATTTCATTCTTTTCTGCTTC+TGG + Chr4:64463147-64463166 MsG0480021803.01.T01:intron 30.0%
! CAATCAAAAGTTAGAAGCAT+AGG + Chr4:64464918-64464937 MsG0480021803.01.T01:intron 30.0%
! CTTCTGGGTTCTTTTTATAT+TGG + Chr4:64463092-64463111 MsG0480021803.01.T01:intron 30.0%
! TAGATGAAGCACTCATAAAT+GGG + Chr4:64463897-64463916 MsG0480021803.01.T01:CDS 30.0%
! TTTAGAATTCCTGCTTAACA+CGG + Chr4:64465718-64465737 MsG0480021803.01.T01:three_prime_UTR 30.0%
! TTTCATTCTTTTCTGCTTCT+GGG + Chr4:64463148-64463167 MsG0480021803.01.T01:intron 30.0%
! TTTTCAACAAGTCAGACAAT+AGG - Chr4:64464834-64464853 None:intergenic 30.0%
!! ATAATCATTTTCTAATGGGC+TGG + Chr4:64464200-64464219 MsG0480021803.01.T01:intron 30.0%
!!! AATTCACTCTTTTTTGCTTC+TGG + Chr4:64463003-64463022 MsG0480021803.01.T01:intron 30.0%
!!! ATTCACTCTTTTTTGCTTCT+GGG + Chr4:64463004-64463023 MsG0480021803.01.T01:intron 30.0%
!!! TGACTTGTTGAAAACACTTT+TGG + Chr4:64464840-64464859 MsG0480021803.01.T01:intron 30.0%
!!! TGGCATTTATTTTAATGGGT+TGG + Chr4:64463226-64463245 MsG0480021803.01.T01:intron 30.0%
AACACGGAAATTTCAATAGG+TGG + Chr4:64465734-64465753 MsG0480021803.01.T01:three_prime_UTR 35.0%
AAGAAGAACTGAGAAGGAAA+GGG - Chr4:64462860-64462879 None:intergenic 35.0%
AAGGCTTAGAAAACTAAGTG+AGG + Chr4:64464626-64464645 MsG0480021803.01.T01:CDS 35.0%
AATTCTCAGATATTGGGGAA+AGG - Chr4:64464997-64465016 None:intergenic 35.0%
ACAACAATTTGATCCTGATG+AGG - Chr4:64465635-64465654 None:intergenic 35.0%
AGATATGATGAAGATGGGTA+AGG + Chr4:64465442-64465461 MsG0480021803.01.T01:CDS 35.0%
AGGCTTAGAAAACTAAGTGA+GGG + Chr4:64464627-64464646 MsG0480021803.01.T01:CDS 35.0%
ATAAGCATAAGGACCAATTC+TGG - Chr4:64465420-64465439 None:intergenic 35.0%
ATACGACATTTGGAAAAAGG+TGG - Chr4:64462906-64462925 None:intergenic 35.0%
ATTCTCAGATATTGGGGAAA+GGG - Chr4:64464996-64465015 None:intergenic 35.0%
ATTGGCAATGTAATTGGGTA+AGG + Chr4:64462619-64462638 MsG0480021803.01.T01:five_prime_UTR 35.0%
CTGATACGACATTTGGAAAA+AGG - Chr4:64462909-64462928 None:intergenic 35.0%
GAAATTTCAATAGGTGGTTC+TGG + Chr4:64465740-64465759 MsG0480021803.01.T01:three_prime_UTR 35.0%
GATGGAAATTGCTTGTTTAG+AGG + Chr4:64465265-64465284 MsG0480021803.01.T01:CDS 35.0%
TACGACATTTGGAAAAAGGT+GGG - Chr4:64462905-64462924 None:intergenic 35.0%
TATTTCAATTCAAGGAGCGA+AGG + Chr4:64465047-64465066 MsG0480021803.01.T01:intron 35.0%
TCTTGTCACCATTAACAACA+TGG + Chr4:64464300-64464319 MsG0480021803.01.T01:intron 35.0%
TTAGAATTGGTACTAGAGGA+AGG + Chr4:64462979-64462998 MsG0480021803.01.T01:CDS 35.0%
TTGAAATTTCCGTGTTAAGC+AGG - Chr4:64465730-64465749 None:intergenic 35.0%
! AGATGAAGCACTCATAAATG+GGG + Chr4:64463898-64463917 MsG0480021803.01.T01:CDS 35.0%
! CATGGCAAAATTGTTTTCTC+GGG - Chr4:64463971-64463990 None:intergenic 35.0%
! GATAGTGTGTTGTTGACATT+TGG + Chr4:64463306-64463325 MsG0480021803.01.T01:intron 35.0%
! GCATGGCAAAATTGTTTTCT+CGG - Chr4:64463972-64463991 None:intergenic 35.0%
! TGATTTTCGTCTAAGTGATG+CGG - Chr4:64464083-64464102 None:intergenic 35.0%
! TTGCGACAGTATTTTATCAC+CGG - Chr4:64463834-64463853 None:intergenic 35.0%
!! ATCTCTAAGATAGAGCTTGT+GGG - Chr4:64462650-64462669 None:intergenic 35.0%
!! TTTTTCCTTTTGATTCCCTC+AGG - Chr4:64465911-64465930 None:intergenic 35.0%
AAGAACCATCCAAAGTCGTA+AGG - Chr4:64465207-64465226 None:intergenic 40.0%
AATCTGAATAGCCCCTTCTT+CGG - Chr4:64463795-64463814 None:intergenic 40.0%
AGAAATCAGCCGACCAAATA+TGG - Chr4:64465115-64465134 None:intergenic 40.0%
AGAAGAACTGAGAAGGAAAG+GGG - Chr4:64462859-64462878 None:intergenic 40.0%
AGAATGCAGAAGAGGAAGAA+AGG - Chr4:64462809-64462828 None:intergenic 40.0%
ATACAGAGTTAGCCGAAGAA+GGG + Chr4:64463780-64463799 MsG0480021803.01.T01:CDS 40.0%
ATCCATCTCTAAGTGTAAGC+TGG + Chr4:64464119-64464138 MsG0480021803.01.T01:intron 40.0%
CAAGAAGAACTGAGAAGGAA+AGG - Chr4:64462861-64462880 None:intergenic 40.0%
CACTTAGAGATGGATATCTG+TGG - Chr4:64464114-64464133 None:intergenic 40.0%
CTGCAAAGATGTTCATACCA+CGG - Chr4:64465315-64465334 None:intergenic 40.0%
GAATGCAGAAGAGGAAGAAA+GGG - Chr4:64462808-64462827 None:intergenic 40.0%
GCAATGTAATTGGGTAAGGT+AGG + Chr4:64462623-64462642 MsG0480021803.01.T01:five_prime_UTR 40.0%
GCTTAGAAAACTAAGTGAGG+GGG + Chr4:64464629-64464648 MsG0480021803.01.T01:CDS 40.0%
GGCTTAGAAAACTAAGTGAG+GGG + Chr4:64464628-64464647 MsG0480021803.01.T01:CDS 40.0%
GGTTGTCAAAGCTACCTTAT+TGG + Chr4:64464650-64464669 MsG0480021803.01.T01:CDS 40.0%
GTCATTGCATGGTTCGAATA+AGG - Chr4:64464972-64464991 None:intergenic 40.0%
GTGCTTGAAACTTCCAGAAT+TGG + Chr4:64465404-64465423 MsG0480021803.01.T01:intron 40.0%
TGCAAAGATGTTCATACCAC+GGG - Chr4:64465314-64465333 None:intergenic 40.0%
TTAGAGATGGATATCTGTGG+AGG - Chr4:64464111-64464130 None:intergenic 40.0%
TTCTCAGATATTGGGGAAAG+GGG - Chr4:64464995-64465014 None:intergenic 40.0%
TTTCAACTGAACTCCTCATC+AGG + Chr4:64465619-64465638 MsG0480021803.01.T01:three_prime_UTR 40.0%
! AGCTGTTTCACATGTTGACT+TGG + Chr4:64463281-64463300 MsG0480021803.01.T01:intron 40.0%
! AGTTTCAAGCACTGCACAAA+CGG - Chr4:64465396-64465415 None:intergenic 40.0%
! CAATTTGAAGCTGATCCTGA+GGG + Chr4:64465893-64465912 MsG0480021803.01.T01:three_prime_UTR 40.0%
! GTTTTCTCGGGCAAATAAGT+AGG - Chr4:64463959-64463978 None:intergenic 40.0%
! TCAATTTGAAGCTGATCCTG+AGG + Chr4:64465892-64465911 MsG0480021803.01.T01:three_prime_UTR 40.0%
!! ATGGGTTGGTGCTATATGTT+AGG + Chr4:64463240-64463259 MsG0480021803.01.T01:intron 40.0%
!! GATCTCTAAGATAGAGCTTG+TGG - Chr4:64462651-64462670 None:intergenic 40.0%
!! TGTTTCACATGTTGACTTGG+TGG + Chr4:64463284-64463303 MsG0480021803.01.T01:intron 40.0%
AAGAGCCTTCCTTACGACTT+TGG + Chr4:64465195-64465214 MsG0480021803.01.T01:CDS 45.0%
ACCATCCAAAGTCGTAAGGA+AGG - Chr4:64465203-64465222 None:intergenic 45.0%
AGAGTCATACTCGAGGATAC+TGG + Chr4:64464363-64464382 MsG0480021803.01.T01:intron 45.0%
AGCTTCACTAGGTGATCTAC+CGG + Chr4:64464039-64464058 MsG0480021803.01.T01:CDS 45.0%
AGGAAGAGAGAATGCAGAAG+AGG - Chr4:64462817-64462836 None:intergenic 45.0%
AGGCTATTCCAATTGCACCT+TGG - Chr4:64464758-64464777 None:intergenic 45.0%
AGGGACAAGAAGAACTGAGA+AGG - Chr4:64462866-64462885 None:intergenic 45.0%
ATATGGCAGACACTGAACAG+TGG - Chr4:64464162-64464181 None:intergenic 45.0%
ATCGGTAGCACAGATATGGT+AGG + Chr4:64465546-64465565 MsG0480021803.01.T01:three_prime_UTR 45.0%
ATGAAGATGGGTAAGGATGC+GGG + Chr4:64465449-64465468 MsG0480021803.01.T01:CDS 45.0%
CACCAGCTTACACTTAGAGA+TGG - Chr4:64464124-64464143 None:intergenic 45.0%
CAGGTGCAAGATAATTTCCG+TGG + Chr4:64464591-64464610 MsG0480021803.01.T01:intron 45.0%
CATACAGAGTTAGCCGAAGA+AGG + Chr4:64463779-64463798 MsG0480021803.01.T01:CDS 45.0%
CTCAATCGGTAGCACAGATA+TGG + Chr4:64465542-64465561 MsG0480021803.01.T01:three_prime_UTR 45.0%
CTGATCCTGAGGGAATCAAA+AGG + Chr4:64465903-64465922 MsG0480021803.01.T01:three_prime_UTR 45.0%
CTGTTCAGTGTCTGCCATAT+TGG + Chr4:64464162-64464181 MsG0480021803.01.T01:intron 45.0%
GAGTCATACTCGAGGATACT+GGG + Chr4:64464364-64464383 MsG0480021803.01.T01:intron 45.0%
GATGAAGATGGGTAAGGATG+CGG + Chr4:64465448-64465467 MsG0480021803.01.T01:CDS 45.0%
GGCTATTCCAATTGCACCTT+GGG - Chr4:64464757-64464776 None:intergenic 45.0%
GTACCAATAACACTTCCAGC+CGG - Chr4:64464061-64464080 None:intergenic 45.0%
TACAGAGTTAGCCGAAGAAG+GGG + Chr4:64463781-64463800 MsG0480021803.01.T01:CDS 45.0%
TATGCTAGCAGAGACAAGGA+TGG + Chr4:64465247-64465266 MsG0480021803.01.T01:CDS 45.0%
TCATTGAGTGCAGCTTCACT+AGG + Chr4:64464028-64464047 MsG0480021803.01.T01:CDS 45.0%
TCCGTGGAAATGTGCAAACA+AGG + Chr4:64464607-64464626 MsG0480021803.01.T01:CDS 45.0%
TCTCAGATATTGGGGAAAGG+GGG - Chr4:64464994-64465013 None:intergenic 45.0%
! CACTGCACAAACGGAGTTTT+GGG - Chr4:64465387-64465406 None:intergenic 45.0%
! GAAGGATTGGAAGGTGTAGA+AGG - Chr4:64462837-64462856 None:intergenic 45.0%
! GGAAGCTCTGATACGACATT+TGG - Chr4:64462916-64462935 None:intergenic 45.0%
! TTAGAGCAGTCCACTAGCTT+TGG + Chr4:64463718-64463737 MsG0480021803.01.T01:intron 45.0%
!! CAATAGGTGGTTCTGGATTC+TGG + Chr4:64465747-64465766 MsG0480021803.01.T01:three_prime_UTR 45.0%
!! GCCTTGTTTGCACATTTCCA+CGG - Chr4:64464611-64464630 None:intergenic 45.0%
!! GGGATTTTGAAAGACGCGAA+GGG - Chr4:64462885-64462904 None:intergenic 45.0%
!! TGGGATTTTGAAAGACGCGA+AGG - Chr4:64462886-64462905 None:intergenic 45.0%
AACCGCTTGCAGACATAGGT+GGG + Chr4:64463852-64463871 MsG0480021803.01.T01:CDS 50.0%
ACGCTTGAGAGTCATACTCG+AGG + Chr4:64464356-64464375 MsG0480021803.01.T01:intron 50.0%
AGGAAAGGGGAAGGATTGGA+AGG - Chr4:64462846-64462865 None:intergenic 50.0%
AGGGTATGCTAGCAGAGACA+AGG + Chr4:64465243-64465262 MsG0480021803.01.T01:CDS 50.0%
CAGTCCAGCTAGAGCCAATA+AGG - Chr4:64464667-64464686 None:intergenic 50.0%
CATACCCTGCAATAGGCGTT+CGG - Chr4:64465231-64465250 None:intergenic 50.0%
CGTAAGGAAGGCTCTTTCAC+AGG - Chr4:64465191-64465210 None:intergenic 50.0%
CGTCTGTTGCTCAACAGCAA+CGG - Chr4:64462937-64462956 None:intergenic 50.0%
CTGCTAGCATACCCTGCAAT+AGG - Chr4:64465238-64465257 None:intergenic 50.0%
CTTGCAGACATAGGTGGGAA+GGG + Chr4:64463857-64463876 MsG0480021803.01.T01:CDS 50.0%
GAACTGAGAAGGAAAGGGGA+AGG - Chr4:64462855-64462874 None:intergenic 50.0%
GAGAAGGAAAGGGGAAGGAT+TGG - Chr4:64462850-64462869 None:intergenic 50.0%
GCCTTCCTTACGACTTTGGA+TGG + Chr4:64465199-64465218 MsG0480021803.01.T01:CDS 50.0%
GTTCATACCACGGGTTCCAT+CGG - Chr4:64465305-64465324 None:intergenic 50.0%
TTCATACCACGGGTTCCATC+GGG - Chr4:64465304-64465323 None:intergenic 50.0%
TTCCCACCTATGTCTGCAAG+CGG - Chr4:64463857-64463876 None:intergenic 50.0%
! GCACTGCACAAACGGAGTTT+TGG - Chr4:64465388-64465407 None:intergenic 50.0%
! TTTGGTCGGCTGATTTCTGC+AGG + Chr4:64465117-64465136 MsG0480021803.01.T01:intron 50.0%
!! CTACCGGCTGGAAGTGTTAT+TGG + Chr4:64464055-64464074 MsG0480021803.01.T01:CDS 50.0%
!! GCTACCTTATTGGCTCTAGC+TGG + Chr4:64464660-64464679 MsG0480021803.01.T01:CDS 50.0%
ATGCTTCCAGCTGTTGCCCA+AGG + Chr4:64464738-64464757 MsG0480021803.01.T01:CDS 55.0%
ATTGCACCTTGGGCAACAGC+TGG - Chr4:64464747-64464766 None:intergenic 55.0%
CAACCGCTTGCAGACATAGG+TGG + Chr4:64463851-64463870 MsG0480021803.01.T01:CDS 55.0%
CTCTGACATCCTCTCGTGGA+AGG - Chr4:64463997-64464016 None:intergenic 55.0%
CTTCTTTCTCGAGCTGGACC+TGG + Chr4:64465479-64465498 MsG0480021803.01.T01:CDS 55.0%
CTTGCCGAACGCCTATTGCA+GGG + Chr4:64465224-64465243 MsG0480021803.01.T01:CDS 55.0%
GAGGAGCTTCTTTCTCGAGC+TGG + Chr4:64465473-64465492 MsG0480021803.01.T01:CDS 55.0%
GCATCTCTGACATCCTCTCG+TGG - Chr4:64464001-64464020 None:intergenic 55.0%
GCTGTTGCCCAAGGTGCAAT+TGG + Chr4:64464747-64464766 MsG0480021803.01.T01:CDS 55.0%
GCTTGCAGACATAGGTGGGA+AGG + Chr4:64463856-64463875 MsG0480021803.01.T01:CDS 55.0%
TCACTAGGTGATCTACCGGC+TGG + Chr4:64464043-64464062 MsG0480021803.01.T01:CDS 55.0%
TCATACCACGGGTTCCATCG+GGG - Chr4:64465303-64465322 None:intergenic 55.0%
TCCTCTCGTGGAAGGTTGCA+TGG - Chr4:64463989-64464008 None:intergenic 55.0%
TCGCAACCGCTTGCAGACAT+AGG + Chr4:64463848-64463867 MsG0480021803.01.T01:CDS 55.0%
TCTTGCCGAACGCCTATTGC+AGG + Chr4:64465223-64465242 MsG0480021803.01.T01:CDS 55.0%
TGTGCCTGAGCCAAAGCTAG+TGG - Chr4:64463731-64463750 None:intergenic 55.0%
!! CAGTCCACTAGCTTTGGCTC+AGG + Chr4:64463724-64463743 MsG0480021803.01.T01:intron 55.0%
!! GGATTAGTTGCTTCCCCCGA+TGG + Chr4:64465286-64465305 MsG0480021803.01.T01:CDS 55.0%
CATACCACGGGTTCCATCGG+GGG - Chr4:64465302-64465321 None:intergenic 60.0%
GATGGGTAAGGATGCGGGTG+AGG + Chr4:64465454-64465473 MsG0480021803.01.T01:CDS 60.0%
GCCATGCAACCTTCCACGAG+AGG + Chr4:64463985-64464004 MsG0480021803.01.T01:CDS 60.0%
GGGGAAAGGGGGTCATTGCA+TGG - Chr4:64464983-64465002 None:intergenic 60.0%
GCTTCCCCCGATGGAACCCG+TGG + Chr4:64465295-64465314 MsG0480021803.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 64462592 64465973 64462592 ID=MsG0480021803.01;Name=MsG0480021803.01
Chr4 mRNA 64462592 64465973 64462592 ID=MsG0480021803.01.T01;Parent=MsG0480021803.01;Name=MsG0480021803.01.T01;_AED=0.41;_eAED=0.41;_QI=203|1|1|1|1|1|5|456|369
Chr4 exon 64462592 64463000 64462592 ID=MsG0480021803.01.T01:exon:20411;Parent=MsG0480021803.01.T01
Chr4 exon 64463727 64464132 64463727 ID=MsG0480021803.01.T01:exon:20412;Parent=MsG0480021803.01.T01
Chr4 exon 64464594 64464800 64464594 ID=MsG0480021803.01.T01:exon:20413;Parent=MsG0480021803.01.T01
Chr4 exon 64465139 64465316 64465139 ID=MsG0480021803.01.T01:exon:20414;Parent=MsG0480021803.01.T01
Chr4 exon 64465405 64465973 64465405 ID=MsG0480021803.01.T01:exon:20415;Parent=MsG0480021803.01.T01
Chr4 five_prime_UTR 64462592 64462794 64462592 ID=MsG0480021803.01.T01:five_prime_utr;Parent=MsG0480021803.01.T01
Chr4 CDS 64462795 64463000 64462795 ID=MsG0480021803.01.T01:cds;Parent=MsG0480021803.01.T01
Chr4 CDS 64463727 64464132 64463727 ID=MsG0480021803.01.T01:cds;Parent=MsG0480021803.01.T01
Chr4 CDS 64464594 64464800 64464594 ID=MsG0480021803.01.T01:cds;Parent=MsG0480021803.01.T01
Chr4 CDS 64465139 64465316 64465139 ID=MsG0480021803.01.T01:cds;Parent=MsG0480021803.01.T01
Chr4 CDS 64465405 64465517 64465405 ID=MsG0480021803.01.T01:cds;Parent=MsG0480021803.01.T01
Chr4 three_prime_UTR 64465518 64465973 64465518 ID=MsG0480021803.01.T01:three_prime_utr;Parent=MsG0480021803.01.T01
Gene Sequence

>MsG0480021803.01.T01

ATGGAGATGACCCTTTCTTCCTCTTCTGCATTCTCTCTTCCTTCTACACCTTCCAATCCTTCCCCTTTCCTTCTCAGTTCTTCTTGTCCCTTCGCGTCTTTCAAAATCCCACCTTTTTCCAAATGTCGTATCAGAGCTTCCGTTGCTGTTGAGCAACAGACGCAACAAACCAAAACTGCGATTATTAGAATTGGTACTAGAGGAAGTCCACTAGCTTTGGCTCAGGCACACGAGACTAGAGACAAACTCATAGCATCGCATACAGAGTTAGCCGAAGAAGGGGCTATTCAGATTGTAATAATAAAAACAACCGGTGATAAAATACTGTCGCAACCGCTTGCAGACATAGGTGGGAAGGGCTTGTTTACTAAAGAAATAGATGAAGCACTCATAAATGGGGACATTGACATTGCAGTTCACTCAATGAAAGATGTTCCTACTTATTTGCCCGAGAAAACAATTTTGCCATGCAACCTTCCACGAGAGGATGTCAGAGATGCGTTTATATCATTGAGTGCAGCTTCACTAGGTGATCTACCGGCTGGAAGTGTTATTGGTACCGCATCACTTAGACGAAAATCACAAATCCTCCACAGATATCCATCTCTAAGTGTGCAAGATAATTTCCGTGGAAATGTGCAAACAAGGCTTAGAAAACTAAGTGAGGGGGTTGTCAAAGCTACCTTATTGGCTCTAGCTGGACTGAAACGATTAAATATGACAGAAAATGTTACTTCGACACTTTCAATTGATGATATGCTTCCAGCTGTTGCCCAAGGTGCAATTGGAATAGCCTGTAGAAGTAATGATGATAAAATGGCAGAATATCTTGCTTTGCTGAATCATGAAGAAACAAGATTAGCAATTTCCTGTGAAAGAGCCTTCCTTACGACTTTGGATGGTTCTTGCCGAACGCCTATTGCAGGGTATGCTAGCAGAGACAAGGATGGAAATTGCTTGTTTAGAGGATTAGTTGCTTCCCCCGATGGAACCCGTGTGCTTGAAACTTCCAGAATTGGTCCTTATGCTTATGAAGATATGATGAAGATGGGTAAGGATGCGGGTGAGGAGCTTCTTTCTCGAGCTGGACCTGGTTTTTTCAATAGTTAA

Protein sequence

>MsG0480021803.01.T01

MEMTLSSSSAFSLPSTPSNPSPFLLSSSCPFASFKIPPFSKCRIRASVAVEQQTQQTKTAIIRIGTRGSPLALAQAHETRDKLIASHTELAEEGAIQIVIIKTTGDKILSQPLADIGGKGLFTKEIDEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLSAASLGDLPAGSVIGTASLRRKSQILHRYPSLSVQDNFRGNVQTRLRKLSEGVVKATLLALAGLKRLNMTENVTSTLSIDDMLPAVAQGAIGIACRSNDDKMAEYLALLNHEETRLAISCERAFLTTLDGSCRTPIAGYASRDKDGNCLFRGLVASPDGTRVLETSRIGPYAYEDMMKMGKDAGEELLSRAGPGFFNS*